Query 004022
Match_columns 779
No_of_seqs 885 out of 4512
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 16:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.9E-52 4.2E-57 512.7 46.2 571 4-731 514-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 5.2E-42 1.1E-46 421.0 28.2 486 26-524 71-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 5E-40 1.1E-44 403.4 27.5 464 29-503 98-590 (968)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-31 3.9E-36 279.0 2.7 376 26-428 54-446 (873)
5 KOG4194 Membrane glycoprotein 100.0 2.7E-29 5.9E-34 262.8 5.7 358 25-410 79-449 (873)
6 KOG0472 Leucine-rich repeat pr 99.9 1.5E-30 3.3E-35 261.2 -10.8 419 20-455 41-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 5.6E-30 1.2E-34 269.1 -7.3 358 47-435 6-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 4.2E-29 9.2E-34 262.5 -4.4 348 41-418 25-380 (1255)
9 KOG0618 Serine/threonine phosp 99.9 6.4E-28 1.4E-32 265.8 -2.0 425 26-489 23-502 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 5E-29 1.1E-33 250.4 -12.2 396 46-476 43-541 (565)
11 PLN03210 Resistant to P. syrin 99.9 7.9E-24 1.7E-28 260.5 26.7 300 168-500 590-909 (1153)
12 KOG0618 Serine/threonine phosp 99.9 4.7E-25 1E-29 243.3 -1.5 372 23-432 44-487 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 1.9E-19 4.2E-24 206.0 19.0 263 91-418 201-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 5.5E-19 1.2E-23 202.3 16.5 243 91-396 222-465 (788)
15 KOG4237 Extracellular matrix p 99.7 2.9E-19 6.2E-24 180.4 -2.6 243 24-295 69-359 (498)
16 PRK15370 E3 ubiquitin-protein 99.7 4E-17 8.7E-22 188.4 13.6 247 91-413 178-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 7.6E-17 1.7E-21 186.1 13.8 206 48-300 178-384 (754)
18 KOG4237 Extracellular matrix p 99.7 5.8E-18 1.3E-22 171.0 -2.4 361 79-474 58-475 (498)
19 cd00116 LRR_RI Leucine-rich re 99.5 3.5E-16 7.5E-21 167.6 -2.8 180 213-411 110-318 (319)
20 KOG0617 Ras suppressor protein 99.5 2E-16 4.3E-21 142.2 -4.1 164 85-279 28-193 (264)
21 KOG0617 Ras suppressor protein 99.5 2.3E-16 5E-21 141.7 -5.4 171 103-305 23-195 (264)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-14 2.9E-19 155.3 0.3 259 117-414 2-292 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.3 2.2E-12 4.7E-17 151.7 8.1 209 102-342 512-730 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.2 6.8E-12 1.5E-16 147.6 7.2 122 188-310 523-646 (889)
25 COG4886 Leucine-rich repeat (L 99.0 9.5E-10 2.1E-14 121.4 8.0 177 189-417 117-294 (394)
26 KOG3207 Beta-tubulin folding c 99.0 1.5E-10 3.2E-15 119.7 1.4 204 208-412 118-338 (505)
27 PRK15386 type III secretion pr 98.9 2.4E-09 5.3E-14 113.3 9.7 161 353-550 51-216 (426)
28 COG4886 Leucine-rich repeat (L 98.9 9.8E-10 2.1E-14 121.3 6.9 197 95-303 97-298 (394)
29 KOG0532 Leucine-rich repeat (L 98.9 3.9E-11 8.5E-16 127.5 -4.9 171 92-295 76-247 (722)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.8E-14 102.5 4.6 66 103-178 9-75 (175)
31 KOG0532 Leucine-rich repeat (L 98.9 5.2E-10 1.1E-14 119.1 0.6 189 192-410 79-270 (722)
32 KOG3207 Beta-tubulin folding c 98.8 5.7E-10 1.2E-14 115.4 0.4 196 91-291 121-335 (505)
33 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 100.2 4.3 108 44-179 15-125 (175)
34 KOG1259 Nischarin, modulator o 98.8 2E-09 4.4E-14 105.8 1.3 38 257-294 372-411 (490)
35 PRK15386 type III secretion pr 98.7 4.5E-08 9.7E-13 103.9 8.1 136 396-544 48-187 (426)
36 KOG1909 Ran GTPase-activating 98.6 8.1E-10 1.8E-14 111.4 -5.4 60 234-293 156-224 (382)
37 KOG1259 Nischarin, modulator o 98.6 3.3E-09 7.1E-14 104.4 -1.2 79 91-178 284-363 (490)
38 KOG1909 Ran GTPase-activating 98.5 2E-08 4.4E-13 101.5 -0.0 198 206-413 25-254 (382)
39 PLN03150 hypothetical protein; 98.4 4.1E-07 8.8E-12 105.4 8.3 91 213-303 420-511 (623)
40 KOG0531 Protein phosphatase 1, 98.4 2.6E-08 5.6E-13 110.3 -1.9 174 86-295 91-268 (414)
41 PLN03150 hypothetical protein; 98.4 7.7E-07 1.7E-11 103.2 8.2 107 145-271 419-527 (623)
42 PF13855 LRR_8: Leucine rich r 98.3 3.6E-07 7.7E-12 71.1 3.3 57 92-155 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.3 8E-08 1.7E-12 106.3 -1.2 171 91-296 72-246 (414)
44 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 67.4 3.8 57 189-245 2-59 (61)
45 KOG2982 Uncharacterized conser 98.2 4.4E-07 9.5E-12 89.7 0.6 107 92-222 46-157 (418)
46 KOG2120 SCF ubiquitin ligase, 98.0 2.9E-07 6.3E-12 91.0 -4.5 59 190-248 187-247 (419)
47 KOG2120 SCF ubiquitin ligase, 97.9 4.7E-07 1E-11 89.5 -5.0 165 329-494 185-373 (419)
48 KOG1859 Leucine-rich repeat pr 97.8 3E-07 6.5E-12 100.9 -9.4 129 189-344 165-294 (1096)
49 KOG1859 Leucine-rich repeat pr 97.8 2E-06 4.4E-11 94.6 -3.5 116 314-433 172-291 (1096)
50 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 54.9 3.4 39 355-393 2-40 (44)
51 KOG2982 Uncharacterized conser 97.6 1.6E-05 3.4E-10 79.0 0.5 182 233-414 69-263 (418)
52 KOG4341 F-box protein containi 97.6 2E-06 4.3E-11 89.2 -6.3 36 145-180 139-177 (483)
53 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.6E-09 52.2 3.8 37 377-413 1-37 (44)
54 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.4E-09 67.6 6.1 87 86-179 37-125 (233)
55 KOG4341 F-box protein containi 97.5 6.1E-06 1.3E-10 85.7 -4.8 40 374-413 398-439 (483)
56 COG5238 RNA1 Ran GTPase-activa 97.4 7.7E-06 1.7E-10 80.1 -5.2 61 234-294 156-226 (388)
57 COG5238 RNA1 Ran GTPase-activa 97.3 3.8E-05 8.1E-10 75.4 -0.9 151 254-414 87-256 (388)
58 KOG4579 Leucine-rich repeat (L 97.3 4.2E-06 9.2E-11 73.6 -6.7 81 91-179 53-135 (177)
59 KOG1644 U2-associated snRNP A' 97.3 0.00046 1E-08 65.3 6.1 123 93-245 21-150 (233)
60 KOG3665 ZYG-1-like serine/thre 97.3 9.5E-05 2.1E-09 85.7 1.5 128 144-272 122-263 (699)
61 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.9E-09 84.5 1.2 143 329-473 122-285 (699)
62 KOG4579 Leucine-rich repeat (L 96.9 3.6E-05 7.8E-10 67.9 -4.7 114 20-161 23-139 (177)
63 KOG2739 Leucine-rich acidic nu 96.1 0.0022 4.8E-08 63.4 1.4 104 327-433 41-155 (260)
64 KOG2739 Leucine-rich acidic nu 95.8 0.0042 9.2E-08 61.5 1.8 85 91-180 43-129 (260)
65 KOG1947 Leucine rich repeat pr 95.8 0.0038 8.2E-08 70.8 1.7 89 207-295 210-308 (482)
66 KOG2123 Uncharacterized conser 95.8 0.00059 1.3E-08 67.5 -4.1 87 328-418 18-106 (388)
67 PF13306 LRR_5: Leucine rich r 95.2 0.065 1.4E-06 48.4 7.3 106 39-176 3-112 (129)
68 KOG1947 Leucine rich repeat pr 95.0 0.0054 1.2E-07 69.5 -0.8 188 208-414 240-441 (482)
69 PF07725 LRR_3: Leucine Rich R 94.5 0.025 5.5E-07 32.2 1.5 20 114-133 1-20 (20)
70 PF00560 LRR_1: Leucine Rich R 94.2 0.017 3.6E-07 34.3 0.4 19 379-397 2-20 (22)
71 KOG2123 Uncharacterized conser 94.2 0.0022 4.7E-08 63.6 -5.4 37 190-226 65-103 (388)
72 PF13306 LRR_5: Leucine rich r 93.6 0.21 4.6E-06 44.9 6.9 87 201-291 24-112 (129)
73 PF00560 LRR_1: Leucine Rich R 92.6 0.072 1.6E-06 31.5 1.4 19 190-208 2-20 (22)
74 PF13504 LRR_7: Leucine rich r 92.3 0.083 1.8E-06 29.0 1.3 16 378-393 2-17 (17)
75 PF13504 LRR_7: Leucine rich r 91.6 0.1 2.2E-06 28.7 1.1 16 92-107 2-17 (17)
76 KOG0473 Leucine-rich repeat pr 91.6 0.0055 1.2E-07 59.2 -6.6 92 39-158 33-125 (326)
77 KOG4308 LRR-containing protein 84.4 0.019 4.1E-07 64.0 -9.4 188 212-414 88-304 (478)
78 smart00369 LRR_TYP Leucine-ric 84.2 0.73 1.6E-05 28.3 1.7 20 376-395 1-20 (26)
79 smart00370 LRR Leucine-rich re 84.2 0.73 1.6E-05 28.3 1.7 20 376-395 1-20 (26)
80 KOG0473 Leucine-rich repeat pr 82.8 0.043 9.3E-07 53.3 -6.4 84 28-132 46-130 (326)
81 KOG4308 LRR-containing protein 80.6 0.015 3.3E-07 64.8 -12.0 170 202-390 106-303 (478)
82 smart00370 LRR Leucine-rich re 79.6 1.4 3E-05 27.1 1.7 20 258-277 1-20 (26)
83 smart00369 LRR_TYP Leucine-ric 79.6 1.4 3E-05 27.1 1.7 20 258-277 1-20 (26)
84 smart00364 LRR_BAC Leucine-ric 78.2 1.5 3.3E-05 27.0 1.5 18 91-108 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 75.6 2.1 4.6E-05 26.4 1.7 20 47-66 1-20 (26)
86 KOG3864 Uncharacterized conser 74.2 0.66 1.4E-05 44.5 -1.2 80 330-410 102-186 (221)
87 KOG3864 Uncharacterized conser 62.4 1.1 2.3E-05 43.1 -2.4 34 329-362 151-184 (221)
88 PF13516 LRR_6: Leucine Rich r 50.5 5.4 0.00012 23.8 0.1 11 236-246 3-13 (24)
89 smart00368 LRR_RI Leucine rich 40.1 23 0.0005 22.2 1.8 15 113-127 2-16 (28)
90 KOG3763 mRNA export factor TAP 39.1 16 0.00034 40.8 1.5 64 352-416 216-286 (585)
91 smart00367 LRR_CC Leucine-rich 38.5 19 0.00041 22.0 1.2 14 463-476 2-15 (26)
92 KOG3763 mRNA export factor TAP 35.1 18 0.00038 40.4 1.1 66 111-181 216-284 (585)
93 KOG4242 Predicted myosin-I-bin 26.4 2.5E+02 0.0054 31.2 7.7 78 91-177 165-251 (553)
94 KOG4242 Predicted myosin-I-bin 23.6 2.9E+02 0.0062 30.7 7.6 147 91-247 135-311 (553)
95 PF05725 FNIP: FNIP Repeat; I 22.3 1.5E+02 0.0032 20.8 3.6 33 89-121 10-42 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-52 Score=512.65 Aligned_cols=571 Identities=29% Similarity=0.467 Sum_probs=388.6
Q ss_pred eeecchhhHHHhhcCcccccEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecC
Q 004022 4 FCFRLTHSLFLFFFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP 83 (779)
Q Consensus 4 ~c~~~~~i~~vL~~~~g~~~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~ 83 (779)
+-|+++||++||++++|+++|++|++|++......+.+++|.+|++|++|.++.+.+. ........+|
T Consensus 514 ~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~------------~~~~~~~~lp 581 (1153)
T PLN03210 514 FLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD------------QKKEVRWHLP 581 (1153)
T ss_pred eEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc------------ccccceeecC
Confidence 5688999999999999999999999999999989999999999999999999877542 0112346789
Q ss_pred CCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC
Q 004022 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN 163 (779)
Q Consensus 84 ~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~ 163 (779)
+++..+|.+||.|+|.+|+++.+|..|.+.+|++|+|++|+++.+|+|.+ .+++|+.|+|++|..++.+|.+
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~--------~l~~Lk~L~Ls~~~~l~~ip~l 653 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH--------SLTGLRNIDLRGSKNLKEIPDL 653 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc--------cCCCCCEEECCCCCCcCcCCcc
Confidence 99999999999999999999999999999999999999999999877754 8999999999999889999999
Q ss_pred CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecc
Q 004022 164 LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 243 (779)
Q Consensus 164 ~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 243 (779)
..+++|+.|++++|..+ ..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 654 s~l~~Le~L~L~~c~~L--------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 654 SMATNLETLKLSDCSSL--------------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred ccCCcccEEEecCCCCc--------------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999999999877 7788889999999999999999999999866 69999999999
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCc
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS 323 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~ 323 (779)
+|..++.+|.. ..+|++|++++|.++.+|..+ .+++|+.|.+.++.... ++..+..+. +.
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~---------------~~ 772 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPLT---------------PL 772 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-ccccccccc---------------hh
Confidence 99988888864 468999999999999999865 58889999887754321 111111110 00
Q ss_pred cccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCC-CccCCcccCCCCCccEEEEecCC-CccCChhccCCCC
Q 004022 324 SVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIPQEIAYLSSLEILYLSGNN-FESLPAIIKQMSQ 401 (779)
Q Consensus 324 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~~p~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 401 (779)
.....++|+.|++++|.....+|.. +..+++|+.|++++|. +..+|..+ .+++|+.|++++|. +..+|.. .++
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 1112344555555555544444443 3455555555555553 33354443 45555555555542 3333321 234
Q ss_pred CCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCCcc
Q 004022 402 LRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRS 478 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L~~ 478 (779)
|+.|++++|.+. .+|. .+++|+.|++++|+.++.+|....+ +++|+.|++++|..|..
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~------------------L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK------------------LKHLETVDFSDCGALTE 908 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc------------------ccCCCeeecCCCccccc
Confidence 444444444332 1221 1122222444444444443321100 13455555555555543
Q ss_pred cCCCCCCccEEEEecCCCCCCccccccCCcccchhhhhhhccCCCCCcccccccccccceeecccccccCcccchhhhHH
Q 004022 479 LPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILAD 558 (779)
Q Consensus 479 l~~~~~sL~~L~i~~C~~L~~lp~~l~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C~~l~~~~~~~i~~~ 558 (779)
++-.........+.+ + ... . + ++...+.|.+|.++++.++.
T Consensus 909 ~~l~~~~~~~~~~~~---------------------n--~~~------~----~-p~~~~l~f~nC~~L~~~a~l----- 949 (1153)
T PLN03210 909 ASWNGSPSEVAMATD---------------------N--IHS------K----L-PSTVCINFINCFNLDQEALL----- 949 (1153)
T ss_pred ccCCCCchhhhhhcc---------------------c--ccc------c----C-CchhccccccccCCCchhhh-----
Confidence 321000000000000 0 000 0 1 12345778999999976642
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhhhcccccccEEEecCCCCCccccccCCCceEE-EECCCCCCCCCcceeEEEEEEccCC
Q 004022 559 SLLRIRHMAIASLRLGYEMAINEKLSELRGSLIVLPGSEIPDWFSNQSSGSSIC-IQLPPHSSCRNLIGFAFCAVLDSKK 637 (779)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~gf~~c~v~~~~~ 637 (779)
+. + .....+++||.+||+||.||+.|++++ |++|+.|....|.||++|+|+++..
T Consensus 950 ---~~------------------~---~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210 950 ---QQ------------------Q---SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSES 1005 (1153)
T ss_pred ---cc------------------c---ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCc
Confidence 10 0 011238899999999999999999999 9999999988999999999998776
Q ss_pred CCCCc-ceeeEeeEEEecccccc---CCCCeeEEecccccccccccccceEEceeecc-----ccCC-CCCceeEEEEEE
Q 004022 638 VDSDC-FRYFYVSFQFDLEIKTL---SETKHVDLGYNSRYIEDLIDSDRVILGFKPCL-----NVGF-PDGYHHTIATFK 707 (779)
Q Consensus 638 ~~~~~-~~~~~~~~~~~~~~~~~---~~~dh~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~-~~~~~~~~~~f~ 707 (779)
..... ...+.+.|.|....+.. ...+|+|+.|... .|.+ .|+-+. +... ...|+|+.+.|+
T Consensus 1006 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 1076 (1153)
T PLN03210 1006 FFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG--------SHLV-IFDCCFPLNEDNAPLAELNYDHVDIQFR 1076 (1153)
T ss_pred cccCCCceeEEEEEEEECCCCCccccCCCceeEeeeccc--------cceE-EecccccccccccchhccCCceeeEEEE
Confidence 43221 12566778887776542 3478888887542 1211 111111 1101 125888889998
Q ss_pred EccccceeEEEeeeeeeeecCCCC
Q 004022 708 FFAERKFYKIKRCGLCPVYANPSE 731 (779)
Q Consensus 708 f~~~~~~~~vk~CGv~lvy~~~~~ 731 (779)
|......++||+||||++|.++..
T Consensus 1077 ~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1077 LTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred EecCCCCeEEEeeeEEEeccCCCc
Confidence 877655579999999999966543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-42 Score=420.99 Aligned_cols=486 Identities=20% Similarity=0.220 Sum_probs=275.7
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccc-cc-----cCCCCccccccccce-eecCCCCCCCCCCceEEEc
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYE-IE-----KLPSMSTEEQLSYSK-VQLPNGLDYLPKKLRYLHW 98 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~-i~-----~l~~l~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l 98 (779)
...||++++......+.+|..+++|++|++++|.+++ ++ .+++|..+....... ..+|. ..+ .+|++|++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l-~~L~~L~L 147 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI-PNLETLDL 147 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc-CCCCEEEC
Confidence 3445555555444457789999999999999998852 21 112222222111110 01221 112 34555555
Q ss_pred cCCCCC-CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEec
Q 004022 99 DTYPLR-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFS 175 (779)
Q Consensus 99 ~~n~l~-~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~ 175 (779)
++|.+. .+|..+ .+++|++|+|++|.+... +|.+++++++|++|+|++|.+...+|. +..+++|+.|+++
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-------IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCccccc-------CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 555543 334444 455555555555554432 455555555555555555554444443 3345555555555
Q ss_pred CCcCccccCCc---CCCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 176 YCVNLIEFPQI---SGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 176 ~~~~l~~~~~~---~~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
+|.....+|.. +.+|+.|++++|.+. .+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 55544444432 234555555555543 44445555555555555555555555555555555555555555555555
Q ss_pred chhhhcCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCcc
Q 004022 252 PEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSN 329 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~ 329 (779)
|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+. .+.++...+.+|..+..++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 555555555555555555554 33444555555555555555555555555555555555 4444444444555555555
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 407 (779)
+|+.|++++|.+.+..|.. +..+++|+.|++++|.++. +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 5555555555555544433 3456666777777666664 5666666677777777777666 44455666777777777
Q ss_pred CCCCCCCcCCCCC--CCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcc
Q 004022 408 EDFNMLQSLPELP--LCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRS 478 (779)
Q Consensus 408 s~n~~~~~~~~~~--~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~ 478 (779)
++|.+.+.+|..+ .+|+.|++++|.....+|. ++ +|++|++++|.+.+.+|.. +++|++|++++|.....
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 7777766666533 5677777777766555543 22 6777888888777777753 36788888888776666
Q ss_pred cCCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCC
Q 004022 479 LPEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPD 524 (779)
Q Consensus 479 l~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~ 524 (779)
+|.. +++|+.|++++|.....+|..+ .+|+.|++++| .+.+.+|.
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N-~l~~~~p~ 589 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN-HLHGSLPS 589 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC-cceeeCCC
Confidence 6643 4678888888877666778655 35667777766 34444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-40 Score=403.44 Aligned_cols=464 Identities=20% Similarity=0.239 Sum_probs=400.1
Q ss_pred eeccccccc-ccChhhhhcccCCceEeeccCcccccc---cCCCCccccccccce-eecCCCCCCCCCCceEEEccCCCC
Q 004022 29 LDLSKIKGI-NLDPRAFTNMSNLRLFKFYVPKFYEIE---KLPSMSTEEQLSYSK-VQLPNGLDYLPKKLRYLHWDTYPL 103 (779)
Q Consensus 29 Ld~s~~~~~-~l~~~~f~~l~~Lr~L~l~~n~l~~i~---~l~~l~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l~~n~l 103 (779)
||++++... .++...|.++++||+|++++|.+++.- .++++..+....... ..+|..+..+ .+|++|++++|.+
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l 176 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVL 176 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcc
Confidence 566666543 677778889999999999999987422 345555555444332 3567778888 5999999999998
Q ss_pred C-CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCc
Q 004022 104 R-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNL 180 (779)
Q Consensus 104 ~-~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l 180 (779)
. .+|..+ ++++|++|+|++|.+... +|..++++++|++|+|++|.+...+|. +.++++|++|++++|...
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQ-------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCc-------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 5 678777 899999999999998764 899999999999999999998878876 667999999999999887
Q ss_pred cccCCcC---CCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhh
Q 004022 181 IEFPQIS---GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE 256 (779)
Q Consensus 181 ~~~~~~~---~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 256 (779)
..+|..+ .+|+.|++++|.+. .+|.++.++++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 7777654 57899999999985 6788999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCee
Q 004022 257 KMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSL 334 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L 334 (779)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|++.+.+|..+..+++|+. .+.++...+.+|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 9999999999999998 68888999999999999999999999999999899988 777777778899999999999999
Q ss_pred eccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCC
Q 004022 335 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 335 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~ 412 (779)
++++|.+.+..|.. +..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|.. ...++|+.|++++|.+
T Consensus 410 ~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 410 RLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCcc
Confidence 99999998877765 6789999999999999988 6777888999999999999987 55554 4568999999999999
Q ss_pred CCcCCCC---CCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccCCC
Q 004022 413 LQSLPEL---PLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPEL 482 (779)
Q Consensus 413 ~~~~~~~---~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~~ 482 (779)
.+.+|.. +++|+.|++++|.....+|. ++ +|++|++++|.+.+.+|.. +++|+.|++++|.....+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 9988874 47899999999988777764 33 8999999999999998874 478999999999988888854
Q ss_pred ---CCCccEEEEecCCCCCCcccc
Q 004022 483 ---PLCLQLLTVRNCNRLQSLPEI 503 (779)
Q Consensus 483 ---~~sL~~L~i~~C~~L~~lp~~ 503 (779)
+++|+.|++++|+-...+|..
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc
Confidence 468999999999887788854
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-31 Score=279.02 Aligned_cols=376 Identities=19% Similarity=0.155 Sum_probs=300.3
Q ss_pred EEEeecccccccccChhhhhccc--CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMS--NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPL 103 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~--~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l 103 (779)
+..||+++.+.-.++...+.+.- .-++|++++|.++.+ -+.++.++| +|+.+++..|.+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i------------------d~~~f~nl~-nLq~v~l~~N~L 114 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI------------------DFEFFYNLP-NLQEVNLNKNEL 114 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccC------------------cHHHHhcCC-cceeeeeccchh
Confidence 45578887765555555555543 345599999988521 133556675 999999999999
Q ss_pred CCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCCCCCCCCCcEEEecCCcCcc
Q 004022 104 RTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 104 ~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~~~~l~~L~~L~L~~~~~l~ 181 (779)
+.+|... ...+|+.|+|.+|.|+.+ -..++..++.|+.|||+.|.+.. ..|.+..-.++++|+|++|.+..
T Consensus 115 t~IP~f~~~sghl~~L~L~~N~I~sv-------~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~ 187 (873)
T KOG4194|consen 115 TRIPRFGHESGHLEKLDLRHNLISSV-------TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT 187 (873)
T ss_pred hhcccccccccceeEEeeeccccccc-------cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc
Confidence 9999887 556799999999999986 44567789999999999998544 23345566899999999998765
Q ss_pred cc---CCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhc
Q 004022 182 EF---PQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 257 (779)
Q Consensus 182 ~~---~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 257 (779)
.- .+.+.+|..|.|++|.|+.+|. .|.+|++|+.|+|..|.+...-...|.++++|+.|.|..|.+...-...|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 32 3445578899999999999997 5667999999999998865443556889999999999999988877788899
Q ss_pred CccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC-ccccCccccCeee
Q 004022 258 MEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP-SSVALSNMLRSLD 335 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp-~~l~~l~~L~~L~ 335 (779)
+.++++|+|..|.++.+.. |+.+++.|+.|++++|.+...-++++.-.++|+++....+.+..++ ..+..+..|++|+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 9999999999999998865 5889999999999999998888888888899999555555566555 5578899999999
Q ss_pred ccCCCCCCccChhhccCCCCCcEEEecCCCCcc-C---CcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCC
Q 004022 336 SSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-I---PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 336 l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~---p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n 410 (779)
+++|.+... ....+.++.+|++|+|++|.+.- + ...+..+++|+.|++.||++..+| ..+.++++|++|+|.+|
T Consensus 348 Ls~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 348 LSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred ccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 999987654 33447889999999999998765 2 334778999999999999999999 67999999999999999
Q ss_pred CCCCcCCCCC--CCccEEEE
Q 004022 411 NMLQSLPELP--LCLKYLHL 428 (779)
Q Consensus 411 ~~~~~~~~~~--~~L~~L~l 428 (779)
.+...-|..| ..|++|.+
T Consensus 427 aiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 427 AIASIQPNAFEPMELKELVM 446 (873)
T ss_pred cceeecccccccchhhhhhh
Confidence 9988777755 34666654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-29 Score=262.79 Aligned_cols=358 Identities=17% Similarity=0.106 Sum_probs=213.3
Q ss_pred EEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCC
Q 004022 25 EGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR 104 (779)
Q Consensus 25 ~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~ 104 (779)
..-.||++++....++...|.++++|+.+++.+|.++.|+.. .... .+|+.|+|.+|.|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-------------------~~~s-ghl~~L~L~~N~I~ 138 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-------------------GHES-GHLEKLDLRHNLIS 138 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-------------------cccc-cceeEEeeeccccc
Confidence 334599999998899999999999999999999999644432 2222 24555555555554
Q ss_pred CCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC-CCCCCCCCCCcEEEecCCcCcc
Q 004022 105 TLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS-FPSNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 105 ~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-~p~~~~l~~L~~L~L~~~~~l~ 181 (779)
++.+.- .++.|+.|||+.|.|+.+. -.+|..-.++++|+|++|.+.+. ...|.++.+|..|.|+.|...+
T Consensus 139 sv~se~L~~l~alrslDLSrN~is~i~-------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 139 SVTSEELSALPALRSLDLSRNLISEIP-------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred cccHHHHHhHhhhhhhhhhhchhhccc-------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 444332 3444555555555554431 11222334455555555543331 1123344455555555544332
Q ss_pred ccC---CcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhc
Q 004022 182 EFP---QISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 257 (779)
Q Consensus 182 ~~~---~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 257 (779)
--+ +.+++|+.|+|..|.|..+ -..|..|++|+.|.+..|.+.+.-...|..+.++++|+|+.|+....-...+-+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 111 1223444555555555444 224455555555555555544444444555555555555555554444444555
Q ss_pred CccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCc-cccCccccCeee
Q 004022 258 MEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS-SVALSNMLRSLD 335 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~-~l~~l~~L~~L~ 335 (779)
++.|+.|++++|.|..+ ++++...++|+.|+|+.|.+...-+.+|..+..|+.+..+.+.+..+.+ .|..+++|++|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 55555555555555544 2334555555555555555555555555555555554444444444433 467788999999
Q ss_pred ccCCCCCCccC--hhhccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCC
Q 004022 336 SSHCKGLESFP--RTFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 336 l~~n~~~~~~~--~~~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n 410 (779)
+++|.+...+. ...+.++++|+.|.+.+|++..+|. ++..+++|+.|+|.+|.+.++. ..|..+ .|++|.+..-
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 99998876543 3347789999999999999999875 5889999999999999988654 678888 8888877653
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.5e-30 Score=261.20 Aligned_cols=419 Identities=21% Similarity=0.264 Sum_probs=309.7
Q ss_pred ccccEEEEEeecccccccccChhhhhcccCCceEeeccCcccccc----cCCCCccccccccceeecCCCCCCCCCCceE
Q 004022 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE----KLPSMSTEEQLSYSKVQLPNGLDYLPKKLRY 95 (779)
Q Consensus 20 g~~~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~----~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~ 95 (779)
.++.+.--.++++.+....+. ..+.++..|.+|++.+|+++.++ .+.++..+..+......+|+.+..++ +|+.
T Consensus 41 wW~qv~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-~l~~ 118 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI-SLVK 118 (565)
T ss_pred hhhhcchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh-hhhh
Confidence 345566666777777654444 46778888888888888877433 34556666666666678898888885 9999
Q ss_pred EEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEe
Q 004022 96 LHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINF 174 (779)
Q Consensus 96 L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L 174 (779)
|+.+.|.++.+|+.+ .+..|+.|+..+|+|+. +|+.+.++.+|..|++.+|+.....|+...++.|++|+.
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhcccccccc--------CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 999999999998887 88899999999999988 688888999999999999986666666777999999998
Q ss_pred cCCcCccccCCcCCC---ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCccccccc-CCCCCCcEEecccccCCcc
Q 004022 175 SYCVNLIEFPQISGK---VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSF-CKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 175 ~~~~~l~~~~~~~~~---L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~ 250 (779)
..| .++.+|+.++. |..|++..|.|..+| .|+.+..|++|.+..|. ++.+|... ..+.+|.+|++.+|+ +++
T Consensus 191 ~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke 266 (565)
T KOG0472|consen 191 NSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKE 266 (565)
T ss_pred chh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-ccc
Confidence 877 46778877765 455678889999999 78888999999998876 55666554 489999999999865 566
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC----------------------------------
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD---------------------------------- 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~---------------------------------- 296 (779)
.|+.+..+.+|.+||+++|.|+.+|.+++++ +|+.|.+.+|++-+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 8888999999999999999999999999999 99999998887522
Q ss_pred ---CCCC-CCCC---chhHHHHHhhc--------------------------ccCCcCCccccCccccCe-eeccCCCCC
Q 004022 297 ---NLPD-NIGS---LEYLYYILAAA--------------------------SAISQLPSSVALSNMLRS-LDSSHCKGL 342 (779)
Q Consensus 297 ---~lp~-~l~~---l~~L~~~~~~~--------------------------~~~~~lp~~l~~l~~L~~-L~l~~n~~~ 342 (779)
..|. .+.. +.+.+.+.... +.+..+|..+..+..+.+ +.+++|. .
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~-i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK-I 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc-c
Confidence 0011 1111 11122211111 122233444444444444 3444444 4
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC---C
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE---L 419 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~---~ 419 (779)
+.++.. +..+++|..|++++|.+.++|..++.+..|+.|+++.|.|..+|.++-.+..|+.+-.++|++...-+. .
T Consensus 425 sfv~~~-l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 425 SFVPLE-LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred ccchHH-HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 434433 678999999999999999999999999999999999999999998887777777766666665544444 3
Q ss_pred CCCccEEEEecCCCCCCCCCCC--CCccEEEeeCCCCC
Q 004022 420 PLCLKYLHLIDCKMLQSLPVLP--FCLESLDLTGCNML 455 (779)
Q Consensus 420 ~~~L~~L~l~~c~~l~~lp~l~--~~L~~L~ls~n~~l 455 (779)
..+|+.|++.+|...+.-|.+. .+|++|+++||++.
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 4778889998886443333332 38999999999986
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.6e-30 Score=269.09 Aligned_cols=358 Identities=20% Similarity=0.247 Sum_probs=180.9
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i 125 (779)
++-.|-.|+++|.+ ++..+|.++..+ .++++|.|....+..+|... .+.+|++|.+++|++
T Consensus 6 LpFVrGvDfsgNDF-----------------sg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L 67 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF-----------------SGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL 67 (1255)
T ss_pred cceeecccccCCcC-----------------CCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh
Confidence 34466677777777 345666666666 47777777777777777666 667777777777776
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCCCCcEEEecCCcCccccCCcC---CCccEEEecCcCC
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSAI 200 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~n~i 200 (779)
.. +...+..++.|+.+++..|++-. .+| +++.+..|..|+|++|+ +++.|..+ .++-+|+|++|+|
T Consensus 68 ~~--------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 68 IS--------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred Hh--------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc
Confidence 65 34445556666666666555322 223 35556666666666654 34444443 2445556666666
Q ss_pred cccCccc-CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC--cCCcc
Q 004022 201 EEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT--ELPSS 277 (779)
Q Consensus 201 ~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~--~lp~~ 277 (779)
..||..+ -+|+.|-.|+|++|+ +..+|+.+..+..|++|.|++|.+...-...+..|++|+.|.+++++-+ .+|.+
T Consensus 139 etIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 6655533 355555555665544 4444555555555555555555443222222233444444444444433 34444
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCc
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG 357 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 357 (779)
+..+.+|..++++.|+ +..+|..+.++.+|+.+..+.+.+..+....+...+|++|+++.|+++..+.. ...++.|+
T Consensus 218 ld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a--vcKL~kL~ 294 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA--VCKLTKLT 294 (1255)
T ss_pred hhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH--HhhhHHHH
Confidence 4444444444444432 23334444444444442222233333333334444455555555544433222 22444455
Q ss_pred EEEecCCCCcc--CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC--CCCCccEEEEecCCC
Q 004022 358 LLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE--LPLCLKYLHLIDCKM 433 (779)
Q Consensus 358 ~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~l~~c~~ 433 (779)
.|.+.+|.++- +|+.++.+..|+.+..++|.+.-+|+.+..+..|+.|.|+.|.+.+.... +++.|+.|++..|++
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 55555444332 55555555555555555555555555555555555555554444332111 234444555555554
Q ss_pred CC
Q 004022 434 LQ 435 (779)
Q Consensus 434 l~ 435 (779)
+.
T Consensus 375 LV 376 (1255)
T KOG0444|consen 375 LV 376 (1255)
T ss_pred cc
Confidence 43
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.2e-29 Score=262.51 Aligned_cols=348 Identities=21% Similarity=0.287 Sum_probs=265.0
Q ss_pred hhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEE
Q 004022 41 PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELN 119 (779)
Q Consensus 41 ~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~ 119 (779)
|.....|++++.|.|...++ ..+|+.+..+ .+|++|.+++|++.++-... .++.|+.++
T Consensus 25 P~~v~qMt~~~WLkLnrt~L-------------------~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKL-------------------EQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred chhHHHhhheeEEEechhhh-------------------hhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 45678899999999988776 4677777777 58888888888877776665 777888888
Q ss_pred CCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcC----CCccEEE
Q 004022 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQIS----GKVTRLY 194 (779)
Q Consensus 120 L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~----~~L~~L~ 194 (779)
+++|++..- | +|..+..+..|.+||||+|+ +++.|. +...+++-.|+|++|++ ..+|..+ ..|-.|+
T Consensus 85 ~R~N~LKns--G----iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 85 VRDNNLKNS--G----IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhccccccC--C----CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhc
Confidence 888877652 2 67777788888888888887 555665 45577788888887764 3455432 3455678
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccC-CcccchhhhcCccCcEeecCCcCCCc
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN-LEHFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
|++|.+..+|+.+..|.+|++|.|++|.+...--..+-.+++|++|.+++.+. +..+|..+..+.+|..++++.|.+..
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 88888888888888888888888888875432112233377788888877543 34678888888888888888888888
Q ss_pred CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc-cChhhccC
Q 004022 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-FPRTFLLG 352 (779)
Q Consensus 274 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~ 352 (779)
+|..+.++++|+.|+|++|.+. .+....+...+|+.+..+.+.+..+|..+..+++|+.|.+.+|++.-. +|+. ++.
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-hhh
Confidence 8888888888888888887654 344445566677776666677888888888888888888888876544 3333 567
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE 418 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~ 418 (779)
+..|+.+..++|.+.-+|+.++.+..|+.|.|+.|.+.++|+.+.-++.|+.|++..|+.+...|.
T Consensus 315 L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 888888888888888899999999999999999999999999999999999999999988766554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.4e-28 Score=265.77 Aligned_cols=425 Identities=21% Similarity=0.173 Sum_probs=305.7
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT 105 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~ 105 (779)
.+.|+++.+-.+..+-++..+.-+|+.|++++|.++ .+|..+..++ +|+.|+++.|.+++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-------------------~fp~~it~l~-~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-------------------SFPIQITLLS-HLRQLNLSRNYIRS 82 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-------------------cCCchhhhHH-HHhhcccchhhHhh
Confidence 445666666555555667777777999999999884 6677777774 88888888888888
Q ss_pred CCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEE------------
Q 004022 106 LPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTI------------ 172 (779)
Q Consensus 106 lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L------------ 172 (779)
+|... ++.+|++|.|.+|.+.. +|.++..+++|++|++++|.+....+.+..+..++.+
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~--------lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQS--------LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred Cchhhhhhhcchhheeccchhhc--------CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 88666 78888888888888876 6888888888888888888754332223334444444
Q ss_pred -------EecCCcCccccCCcCCCccE-EEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEeccc
Q 004022 173 -------NFSYCVNLIEFPQISGKVTR-LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLG 244 (779)
Q Consensus 173 -------~L~~~~~l~~~~~~~~~L~~-L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 244 (779)
++..+.....++.....++. |+|.+|.+. ...+.++.+|+.|....|++.... -..++|+.|+.+.
T Consensus 155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 155 QTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADH 228 (1081)
T ss_pred cccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE----ecCcchheeeecc
Confidence 44444444555555556666 777777776 334555667777777766543321 1256788888888
Q ss_pred ccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 245 CLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 245 ~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
|.+....+.. --.+|++++++.|.++.+|+|++.+.+|+.+.+..|.+ ..+|..+....+|+.+....+.++.+|..
T Consensus 229 n~l~~~~~~p--~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 229 NPLTTLDVHP--VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred Ccceeecccc--ccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 8777443321 23579999999999999999999999999999999877 77888899999999988888899999999
Q ss_pred ccCccccCeeeccCCCCCCccChhh------------------------ccCCCCCcEEEecCCCCcc-CCcccCCCCCc
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTF------------------------LLGLSAMGLLHISDYAVRE-IPQEIAYLSSL 379 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~------------------------~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L 379 (779)
...+++|++|++..|.+...++... -..++.|+.|++.+|.+++ .-..+.++..|
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 9999999999999998766533211 1234567778888888887 44457788899
Q ss_pred cEEEEecCCCccCC-hhccCCCCCCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCCCC--CCccEEEeeCCC
Q 004022 380 EILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVLP--FCLESLDLTGCN 453 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~l~--~~L~~L~ls~n~ 453 (779)
+.|+|++|++.++| ..+.+++.|++|+||+|++.+. |. ....|++|...+|. +..+|++. +.|+.+|+|.|+
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccch
Confidence 99999999999888 4578899999999999877543 33 23567777666653 45566432 289999999998
Q ss_pred CCCC-CCC-CC-CCccEEeeecCcCCcccCCCCCCccEE
Q 004022 454 MLRS-LPE-LP-LCLQYLNLEDCNMLRSLPELPLCLQLL 489 (779)
Q Consensus 454 ~l~~-l~~-~~-~~L~~L~l~~c~~L~~l~~~~~sL~~L 489 (779)
+... +|. .+ ++|++||++++..+..-..-++.++.+
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhh
Confidence 7653 333 33 789999999988754443333333333
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=5e-29 Score=250.37 Aligned_cols=396 Identities=21% Similarity=0.203 Sum_probs=239.9
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSK 124 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~ 124 (779)
.-..|+.|++++|.++ .+.+++..++ .|.+|++++|.+..+|+.+ .+..++.|+.++|+
T Consensus 43 ~qv~l~~lils~N~l~-------------------~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ 102 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-------------------VLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK 102 (565)
T ss_pred hhcchhhhhhccCchh-------------------hccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccch
Confidence 3456888999999885 3344444442 5555555555555555554 55555555555555
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEE-----------------------EecCCcCcc
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTI-----------------------NFSYCVNLI 181 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L-----------------------~L~~~~~l~ 181 (779)
+.+ +|..++.+.+|+.|+.++|.+..-.+++..+..|+.+ ++.+|....
T Consensus 103 ls~--------lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~ 174 (565)
T KOG0472|consen 103 LSE--------LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA 174 (565)
T ss_pred Hhh--------ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh
Confidence 554 4555555555555555555433333334444444444 444443322
Q ss_pred ccCCc--CCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchh-hhcC
Q 004022 182 EFPQI--SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKM 258 (779)
Q Consensus 182 ~~~~~--~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l 258 (779)
..|.. +..|++|+...|.++.+|+.++.+.+|..|++..|+ +..+| .|.++..|++|+++.|.+. .+|.. ..++
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L 251 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHL 251 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHH-hhHHHHhccc
Confidence 22211 234666666667777777777777777777777766 34455 3666777777777665443 34444 4478
Q ss_pred ccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhccc--------------------
Q 004022 259 EHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASA-------------------- 317 (779)
Q Consensus 259 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~-------------------- 317 (779)
.+|..||+..|+++++|..+..+++|+.||+++|.+ ..+|.+++++ .|+. .+.++..
T Consensus 252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred ccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 888888888888888888888888888888888654 4567777766 4444 2222210
Q ss_pred -------CC----------cCCc----cccCccccCeeeccCCCCCCccChhhcc-CCCCCcEEEecCCCCcc-------
Q 004022 318 -------IS----------QLPS----SVALSNMLRSLDSSHCKGLESFPRTFLL-GLSAMGLLHISDYAVRE------- 368 (779)
Q Consensus 318 -------~~----------~lp~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~------- 368 (779)
+. ..+. ......+.+.|++++-+++..+...+-. .-.-....+++.|.+.+
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 00 0000 0112334666666666555443332211 11123444555554443
Q ss_pred -----------------CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEE
Q 004022 369 -----------------IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHL 428 (779)
Q Consensus 369 -----------------~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l 428 (779)
+|..+..+++|..|+|++|-+..+|..++.+..|+.|+++.|.+ ..+|.. +..++.+-.
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHh
Confidence 44456678999999999999999999999999999999999944 233432 233444444
Q ss_pred ecCCCCCCCCCC----CCCccEEEeeCCCCCCCCCC--CCCCccEEeeecCcCC
Q 004022 429 IDCKMLQSLPVL----PFCLESLDLTGCNMLRSLPE--LPLCLQYLNLEDCNML 476 (779)
Q Consensus 429 ~~c~~l~~lp~l----~~~L~~L~ls~n~~l~~l~~--~~~~L~~L~l~~c~~L 476 (779)
+++ .+.+++.- ..+|.+||+.+|.+....|. ..++|++|++++++.-
T Consensus 489 s~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 444 44555431 23799999999998877665 4589999999998754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=7.9e-24 Score=260.52 Aligned_cols=300 Identities=25% Similarity=0.364 Sum_probs=222.1
Q ss_pred CCcEEEecCCcCccccCCcC--CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccc
Q 004022 168 CPVTINFSYCVNLIEFPQIS--GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245 (779)
Q Consensus 168 ~L~~L~L~~~~~l~~~~~~~--~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 245 (779)
+|+.|.+.++. .+.+|..+ .+|+.|++.++.+..++..+..+++|+.|++++|..++.+|. ++.+++|++|+|++|
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 45555555543 23344332 456666666666788888888899999999999888888885 788999999999999
Q ss_pred cCCcccchhhhcCccCcEeecCCc-CCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 246 LNLEHFPEILEKMEHLKRIYSDRT-PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 246 ~~~~~~p~~l~~l~~L~~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
..+..+|..++.+++|+.|++++| .++.+|..+ ++++|+.|++++|..++.+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----------------------- 723 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----------------------- 723 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-----------------------
Confidence 988999999999999999999985 677888765 7899999999998766555431
Q ss_pred ccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC--------cccCCCCCccEEEEecCC-CccCChh
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP--------QEIAYLSSLEILYLSGNN-FESLPAI 395 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p--------~~l~~l~~L~~L~Ls~n~-l~~lp~~ 395 (779)
.++|+.|++++|.+... |.. ..+++|+.|.+.++....++ ......++|+.|+|++|. +..+|..
T Consensus 724 ---~~nL~~L~L~~n~i~~l-P~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 724 ---STNISWLDLDETAIEEF-PSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred ---cCCcCeeecCCCccccc-ccc--ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 24566777777765443 222 14667777777665432221 112335789999999985 5588988
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCCC--CCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCC---CCCCccEEee
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNL 470 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~~--~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l 470 (779)
++++++|+.|++++|..++.+|.. +++|++|++++|..++.+|..+.+|++|++++|.+.. +|. .+++|+.|++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDM 876 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEEC
Confidence 999999999999999888888763 5788999999999988888888888888888887653 443 3477888888
Q ss_pred ecCcCCcccCCC---CCCccEEEEecCCCCCCc
Q 004022 471 EDCNMLRSLPEL---PLCLQLLTVRNCNRLQSL 500 (779)
Q Consensus 471 ~~c~~L~~l~~~---~~sL~~L~i~~C~~L~~l 500 (779)
.+|+.++.+|.. +++|+.|++++|.+|+.+
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 888888887753 356777778888766543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=4.7e-25 Score=243.29 Aligned_cols=372 Identities=21% Similarity=0.243 Sum_probs=184.5
Q ss_pred cEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC
Q 004022 23 AIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP 102 (779)
Q Consensus 23 ~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~ 102 (779)
.|.--.||++.+....++ ..+..+.+|+.|+++.|.|. .+|...... ++|++|.|.+|.
T Consensus 44 ~v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~-------------------~vp~s~~~~-~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIR-------------------SVPSSCSNM-RNLQYLNLKNNR 102 (1081)
T ss_pred eeeeEEeeccccccccCC-chhhhHHHHhhcccchhhHh-------------------hCchhhhhh-hcchhheeccch
Confidence 566677999998765555 47888899999999999884 444445555 467777777777
Q ss_pred CCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCc----------------------------------
Q 004022 103 LRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLS---------------------------------- 147 (779)
Q Consensus 103 l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~---------------------------------- 147 (779)
+..+|..+ .+++|+.|++++|++.. +|..+..+..+.
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGP--------IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCC--------CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 77777666 66777777777776655 222222222222
Q ss_pred -------EEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeC
Q 004022 148 -------ALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRG 220 (779)
Q Consensus 148 -------~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 220 (779)
.|||++|... .-+...+.+|+.|....|.. ..+-..-.+++.|+.+.|.+..+-.. ..-.+|++++++.
T Consensus 175 ~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~l-s~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 175 DIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQL-SELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDISH 250 (1081)
T ss_pred chhhhheeeecccchhh--hhhhhhccchhhhhhhhccc-ceEEecCcchheeeeccCcceeeccc-cccccceeeecch
Confidence 2444444432 11111122222222111111 00011111233333333333321111 1123455555555
Q ss_pred CCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCC
Q 004022 221 CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPD 300 (779)
Q Consensus 221 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 300 (779)
+++ ..+|++++.+.+|+.+....|.+ ..+|..+..+.+|+.|.+..|.+..+|...+.+++|++|+|..|++. .+|+
T Consensus 251 n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 251 NNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 442 23344455555555555555444 33444444455555555555555555554555555555555554332 2222
Q ss_pred CC--------------------------CCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCC
Q 004022 301 NI--------------------------GSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGL 353 (779)
Q Consensus 301 ~l--------------------------~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 353 (779)
.+ .....|+. .+.++......-+.+.++++|+.|++++|++.. +|...+..+
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhch
Confidence 11 12344444 222333333333444555555555555555433 333334555
Q ss_pred CCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCc-CCC-CC-CCccEEEEec
Q 004022 354 SAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS-LPE-LP-LCLKYLHLID 430 (779)
Q Consensus 354 ~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~-~~-~~L~~L~l~~ 430 (779)
..|++|+||+|.++.+|..+..++.|++|...+|++..+| .+.++++|+.+|++.|++... +|. .+ ++|++|++++
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 5555555555555555555555555555555555555555 455555666666555555432 222 22 4555555555
Q ss_pred CC
Q 004022 431 CK 432 (779)
Q Consensus 431 c~ 432 (779)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 54
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.9e-19 Score=206.01 Aligned_cols=263 Identities=18% Similarity=0.193 Sum_probs=200.8
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
+.-..|+++++.++.+|..+. .+|+.|++.+|+++. +|. .+++|++|+|++|+ ++.+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~--------LP~---lp~~Lk~LdLs~N~-LtsLP~l--p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQ-LTSLPVL--PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC--------CCC---CCCCCcEEEecCCc-cCcccCc--ccccc
Confidence 456789999999999998774 489999999999997 453 35789999999997 4566753 46899
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|. +..+|..+.+|+.|++++|.+..+|.. .++|+.|++++|++.+ +|.. ..+|+.|.+++|.+..
T Consensus 266 ~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 266 ELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred eeeccCCc-hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 99999886 456777777888999999998888863 4678889998887554 4542 3457778888776543
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|.. ..+|+.|++++|+++.+|.. ..+|+.|++++|.+. .+|.. ..+
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~------------------------~LP~l---~~~ 383 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT------------------------SLPAL---PSG 383 (788)
T ss_pred cccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc------------------------cCccc---ccc
Confidence 4431 24688888888888887763 346667777766543 22321 246
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCC
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 410 (779)
|+.|++++|.+... |. ..++|+.|++++|.++.+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|
T Consensus 384 L~~LdLs~N~Lt~L-P~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTSL-PV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccCC-CC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 89999999988763 32 246899999999999998864 35788999999999999999999999999999999
Q ss_pred CCCCcCCC
Q 004022 411 NMLQSLPE 418 (779)
Q Consensus 411 ~~~~~~~~ 418 (779)
++.+..+.
T Consensus 456 ~Ls~~~~~ 463 (788)
T PRK15387 456 PLSERTLQ 463 (788)
T ss_pred CCCchHHH
Confidence 99876554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.5e-19 Score=202.33 Aligned_cols=243 Identities=19% Similarity=0.187 Sum_probs=157.1
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|+.|++.+|.++.+|.. +++|++|+|++|+|+. +|. ..++|+.|++++|. +..+|.. ..+|+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts--------LP~---lp~sL~~L~Ls~N~-L~~Lp~l--p~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS--------LPV---LPPGLLELSIFSNP-LTHLPAL--PSGLC 285 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc--------ccC---cccccceeeccCCc-hhhhhhc--hhhcC
Confidence 3566666666666666642 4566666666666665 232 13456666666665 3344431 24566
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|.. ..+|..+.+|+.|++++|.+..+|... .+|+.|++++|.+. .+|. + ..+|+.|+|++|.+..
T Consensus 286 ~L~Ls~N~L-t~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~-l--p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 286 KLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPT-L--PSGLQELSVSDNQLAS- 356 (788)
T ss_pred EEECcCCcc-ccccccccccceeECCCCccccCCCCc---ccccccccccCccc-cccc-c--ccccceEecCCCccCC-
Confidence 666666643 355555566777777777777666532 34666777776643 3443 1 2467777777766553
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.+.. +|. . .++
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~-----------------------l---~s~ 403 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPV-----------------------L---PSE 403 (788)
T ss_pred CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCC-----------------------c---ccC
Confidence 4432 24677788888888877753 3567888888776442 332 1 246
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
|+.|++++|.+... |. .+.+|+.|++++|.++.+|..+..+++|+.|+|++|.++ ..+..+
T Consensus 404 L~~LdLS~N~LssI-P~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCCC-Cc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88888888887653 32 235788999999999999999999999999999999998 334444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=2.9e-19 Score=180.41 Aligned_cols=243 Identities=19% Similarity=0.163 Sum_probs=161.5
Q ss_pred EEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccC-CC
Q 004022 24 IEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDT-YP 102 (779)
Q Consensus 24 i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~-n~ 102 (779)
...|.|| .|.+..+++.+|+.+++||.|||++|.|+.|. |+.+..+. +|-.|-+.+ |+
T Consensus 69 tveirLd--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~------------------p~AF~GL~-~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 69 TVEIRLD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIA------------------PDAFKGLA-SLLSLVLYGNNK 127 (498)
T ss_pred ceEEEec--cCCcccCChhhccchhhhceecccccchhhcC------------------hHhhhhhH-hhhHHHhhcCCc
Confidence 3445555 45556799999999999999999999997432 44455553 444444433 66
Q ss_pred CCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCc
Q 004022 103 LRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCV 178 (779)
Q Consensus 103 l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~ 178 (779)
|+++|.. | ++..|+.|.+.-|++.-+ ..+.|..+++|..|.+.+|.+ ..++. +.++..++.+.+..|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 7777755 3 666677777766666654 445566666666666666653 33332 4456666666665554
Q ss_pred Cc------------cccCCcCC-------------------------CccEE----EecCcCCcccCc-ccCCCCCccEE
Q 004022 179 NL------------IEFPQISG-------------------------KVTRL----YLGQSAIEEVPS-SIECLTDLEVL 216 (779)
Q Consensus 179 ~l------------~~~~~~~~-------------------------~L~~L----~L~~n~i~~lp~-~l~~l~~L~~L 216 (779)
.. ...|..++ .++.+ ....+.....|. .|..|++|+.|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 21 01111111 11111 111122222332 46788999999
Q ss_pred eeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCC
Q 004022 217 DLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 217 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~ 295 (779)
++++|++.+.-+.+|.++..+++|.|..|++...-...|.++..|+.|+|.+|+|+.+ |..|..+.+|.+|++-.|++.
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999998888888899999999999999887766677788999999999999999966 555888999999988877653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4e-17 Score=188.43 Aligned_cols=247 Identities=23% Similarity=0.300 Sum_probs=152.0
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+...|+++++.++.+|..+ +++|+.|+|++|+|+. +|..+. ++|++|++++|. ++.+|... ..+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lts--------LP~~l~--~nL~~L~Ls~N~-LtsLP~~l-~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKS--------LPENLQ--GNIKTLYANSNQ-LTSIPATL-PDTIQ 244 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCc--------CChhhc--cCCCEEECCCCc-cccCChhh-hcccc
Confidence 56788999999999998765 3579999999999987 454443 588899998887 44555421 23566
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|.. ..+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+. .
T Consensus 245 ~L~Ls~N~L---------------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~ 297 (754)
T PRK15370 245 EMELSINRI---------------------TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-T 297 (754)
T ss_pred EEECcCCcc---------------------CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-c
Confidence 666666653 44444332 34555555554433 3444332 35555555555433 2
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|..+. ++|+.|++++|.++.+|..+ .++|+.|++++|.+.+ +|. .+ .++
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~-----------------------~l--~~s 347 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPA-----------------------SL--PPE 347 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CCh-----------------------hh--cCc
Confidence 333221 35666677777776666543 2567777776665432 221 11 145
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc----cCCCCCCEEE
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII----KQMSQLRFIH 406 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~ 406 (779)
|+.|++++|.+.. +|.. -.++|+.|++++|.++.+|..+. .+|+.|++++|+++.+|..+ ..++++..|+
T Consensus 348 L~~L~Ls~N~L~~-LP~~---lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQITV-LPET---LPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCCc-CChh---hcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 7777777776653 2322 13577888888888877776543 36888888888888777543 3457777777
Q ss_pred cCCCCCC
Q 004022 407 LEDFNML 413 (779)
Q Consensus 407 Ls~n~~~ 413 (779)
+.+|++.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7777764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=7.6e-17 Score=186.14 Aligned_cols=206 Identities=17% Similarity=0.279 Sum_probs=161.0
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQ 127 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~ 127 (779)
.+...|+++++.++ .+|..+ |.+|+.|++++|.++.+|..+. .+|++|++++|+++.
T Consensus 178 ~~~~~L~L~~~~Lt-------------------sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lts 234 (754)
T PRK15370 178 NNKTELRLKILGLT-------------------TIPACI---PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTS 234 (754)
T ss_pred cCceEEEeCCCCcC-------------------cCCccc---ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCcccc
Confidence 45788888888774 456543 4689999999999999998764 589999999999987
Q ss_pred ccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcC-CCccEEEecCcCCcccCcc
Q 004022 128 PWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-GKVTRLYLGQSAIEEVPSS 206 (779)
Q Consensus 128 l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~-~~L~~L~L~~n~i~~lp~~ 206 (779)
+|..+. .+|+.|+|++|.+ ..+|... ..+|+.|++++|... .+|..+ .+|+.|++++|.+..+|..
T Consensus 235 --------LP~~l~--~~L~~L~Ls~N~L-~~LP~~l-~s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 235 --------IPATLP--DTIQEMELSINRI-TELPERL-PSALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred --------CChhhh--ccccEEECcCCcc-CcCChhH-hCCCCEEECcCCccC-ccccccCCCCcEEECCCCccccCccc
Confidence 555443 5799999999985 4676533 358999999988654 667644 4899999999999999876
Q ss_pred cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCE
Q 004022 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEV 286 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 286 (779)
+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.++.+|..+ .++|+.
T Consensus 302 lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~ 371 (754)
T PRK15370 302 LP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITT 371 (754)
T ss_pred ch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCE
Confidence 54 57999999998865 456544 3689999999987654 666553 68999999999999998765 368999
Q ss_pred EeccCCCCCCCCCC
Q 004022 287 LFVEDCSKLDNLPD 300 (779)
Q Consensus 287 L~L~~~~~~~~lp~ 300 (779)
|++++|++. .+|.
T Consensus 372 LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 372 LDVSRNALT-NLPE 384 (754)
T ss_pred EECCCCcCC-CCCH
Confidence 999998765 4554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=5.8e-18 Score=171.03 Aligned_cols=361 Identities=19% Similarity=0.197 Sum_probs=212.3
Q ss_pred eeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 79 ~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
-..+|. .+|..-..++|+.|.|+.||.. | .+++|+.|||++|+|+.+ -|++|..++.|..|-+.++..
T Consensus 58 L~eVP~---~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 58 LTEVPA---NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred cccCcc---cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCc
Confidence 344554 4567889999999999999976 5 899999999999999998 788999999999988888555
Q ss_pred CCCCCC--CCCCCCCcEEEecCCcCccc---cCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCc-----
Q 004022 157 LRSFPS--NLHFVCPVTINFSYCVNLIE---FPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLK----- 225 (779)
Q Consensus 157 l~~~p~--~~~l~~L~~L~L~~~~~l~~---~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~----- 225 (779)
++.+|. |.++..|+.|.+.-|...-. ....+.++..|.+..|.+..++. ++..+..++.+.+..|.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 788886 67789999988887765432 22345567777888888888887 77788888888887766321
Q ss_pred -------ccccccCCCCCCcEEecccccCCcccchhhhc-CccCc-EeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 226 -------RISTSFCKLRSLVTLILLGCLNLEHFPEILEK-MEHLK-RIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 226 -------~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~-l~~L~-~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
..|..+++..-..-..+.+..+-..-+..+.. +..+. .+....+.....|.. |..+++|++|++++|++.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 22222333322222222222221111111111 11111 111112223333433 677777888888777766
Q ss_pred CCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccC
Q 004022 296 DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIA 374 (779)
Q Consensus 296 ~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~ 374 (779)
+.-+.+|..+.++ ++|.+..|++.. +....|.++..|+.|+|.+|+++. .|..|.
T Consensus 288 ~i~~~aFe~~a~l-----------------------~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 288 RIEDGAFEGAAEL-----------------------QELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hhhhhhhcchhhh-----------------------hhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 6555555444444 444444444322 222225566666666666666666 455566
Q ss_pred CCCCccEEEEecCCCc------cCChhcc-----------CCCCCCEEEcCCCCCCC---------------cCCCCCCC
Q 004022 375 YLSSLEILYLSGNNFE------SLPAIIK-----------QMSQLRFIHLEDFNMLQ---------------SLPELPLC 422 (779)
Q Consensus 375 ~l~~L~~L~Ls~n~l~------~lp~~l~-----------~l~~L~~L~Ls~n~~~~---------------~~~~~~~~ 422 (779)
.+.+|.+|+|-.|.+- .+-+|+. .-..++.+.+++..+.. .-|..-+.
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c 423 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC 423 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence 6666666666655332 1112221 12234455554433221 11112234
Q ss_pred ccEEEEecCCCCCCCC-CCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCc
Q 004022 423 LKYLHLIDCKMLQSLP-VLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCN 474 (779)
Q Consensus 423 L~~L~l~~c~~l~~lp-~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~ 474 (779)
+.+..=..++.++.+| .+|....+|++.+|.+.....+.+.+| .+++++++
T Consensus 424 ~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~~~~~l-~~dls~n~ 475 (498)
T KOG4237|consen 424 LDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDELLRSL-LLDLSNNR 475 (498)
T ss_pred hhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHHHHhhh-hcccccCc
Confidence 5555444555666666 366667777777777665544455566 66776643
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=3.5e-16 Score=167.57 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=81.2
Q ss_pred ccEEeeeCCCCCc----ccccccCCC-CCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCC-----cCCccC
Q 004022 213 LEVLDLRGCKRLK----RISTSFCKL-RSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPIT-----ELPSSF 278 (779)
Q Consensus 213 L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l 278 (779)
|++|++++|.... .+...+..+ ++|+.|++++|.+.. .++..+..+++|++|++++|.++ .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555554431 112223333 555555555555442 22333444455555555555554 122233
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhh----ccCCC
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF----LLGLS 354 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~ 354 (779)
..+++|+.|++++|.+.+.. ...++..+..+++|++|++++|.+........ ....+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~-------------------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEG-------------------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred HhCCCCCEEeccCCccChHH-------------------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 34455666666555432110 01111223344556666666655443111110 11235
Q ss_pred CCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCccC-----ChhccCC-CCCCEEEcCCCC
Q 004022 355 AMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFESL-----PAIIKQM-SQLRFIHLEDFN 411 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l-~~L~~L~Ls~n~ 411 (779)
.|+.|++++|.+++ +...+..+++|+++++++|.++.- ...+... +.|+++++.+++
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 56666666665542 233344445666666666666522 2223333 556665555543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2e-16 Score=142.15 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=98.2
Q ss_pred CCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-
Q 004022 85 GLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS- 162 (779)
Q Consensus 85 ~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~- 162 (779)
+++.+ .+...|.+++|+++.+|+.+ .+.+|+.|++.+|+|++ +|.+++.+++|+.|+++-|++ ..+|.
T Consensus 28 gLf~~-s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--------lp~~issl~klr~lnvgmnrl-~~lprg 97 (264)
T KOG0617|consen 28 GLFNM-SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--------LPTSISSLPKLRILNVGMNRL-NILPRG 97 (264)
T ss_pred cccch-hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--------cChhhhhchhhhheecchhhh-hcCccc
Confidence 45555 37777888888888888877 88888888888888887 688888888888888887773 33443
Q ss_pred CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEec
Q 004022 163 NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242 (779)
Q Consensus 163 ~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 242 (779)
|..++.|+.|++..|.... ..+|..|..++.|+.|.+++|. .+.+|..++++++|+.|.+
T Consensus 98 fgs~p~levldltynnl~e-------------------~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred cCCCchhhhhhcccccccc-------------------ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 5556677777776665432 2334444444444444444433 2233334444444444444
Q ss_pred ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCC
Q 004022 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE 279 (779)
Q Consensus 243 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~ 279 (779)
..|..+ .+|..++.++.|++|.+.+|.++.+|..++
T Consensus 158 rdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 158 RDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred ccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 443322 244555555555555555555555554433
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.3e-16 Score=141.75 Aligned_cols=171 Identities=23% Similarity=0.321 Sum_probs=126.5
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CCCCCCCCcEEEecCCcCcc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~ 181 (779)
+..+|..|.+.+...|.|++|+++. +|+.+..+.+|+.|++.+|++ +++| .++.+++|+.|+++-|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~--------vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl-- 91 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL-- 91 (264)
T ss_pred HhhcccccchhhhhhhhcccCceee--------cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh--
Confidence 3467788889999999999999987 788888999999999988884 4444 355677777777665543
Q ss_pred ccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCc-ccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 182 EFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLK-RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 182 ~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
..+|..||.++.|+.||+.+|++.+ .+|..|..+..|+.|+|++|. .+.+|..++++++
T Consensus 92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTN 151 (264)
T ss_pred -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcc
Confidence 5677788888888888888776543 567777777778888887754 4556777778888
Q ss_pred CcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCc
Q 004022 261 LKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSL 305 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l 305 (779)
|+.|.+..|.+-++|..++.++.|++|.+.+|.+ ..+|+.++++
T Consensus 152 lqil~lrdndll~lpkeig~lt~lrelhiqgnrl-~vlppel~~l 195 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL-TVLPPELANL 195 (264)
T ss_pred eeEEeeccCchhhCcHHHHHHHHHHHHhccccee-eecChhhhhh
Confidence 8888888888777887777777888887777543 3445544443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1.3e-14 Score=155.29 Aligned_cols=259 Identities=16% Similarity=0.117 Sum_probs=161.1
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC----CCC-CCCCCCCcEEEecCCcCccccCCcCCCcc
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS----FPS-NLHFVCPVTINFSYCVNLIEFPQISGKVT 191 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~----~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~ 191 (779)
.|+|..+.++.- . ....+..+.+|+.|++++|.+... ++. +...++|++|+++++.... .+
T Consensus 2 ~l~L~~~~l~~~---~---~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~------- 67 (319)
T cd00116 2 QLSLKGELLKTE---R---ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IP------- 67 (319)
T ss_pred ccccccCccccc---c---hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cc-------
Confidence 466777776621 0 334455667788888888774321 222 3345667777777654321 00
Q ss_pred EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC---CcEEecccccCCc----ccchhhhcC-ccCcE
Q 004022 192 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS---LVTLILLGCLNLE----HFPEILEKM-EHLKR 263 (779)
Q Consensus 192 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~ 263 (779)
..+..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.
T Consensus 68 ------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 68 ------RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ------hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 111334556677889999999988876555555544444 9999999887663 233455666 88899
Q ss_pred eecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccC
Q 004022 264 IYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSH 338 (779)
Q Consensus 264 L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~ 338 (779)
|++++|.++ .++..+..+++|++|++++|.+.+.. ...++..+..+++|+.|++++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG-------------------IRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH-------------------HHHHHHHHHhCCCCCEEeccC
Confidence 999988887 34445667778888888887654311 011222233456788888888
Q ss_pred CCCCCccCh---hhccCCCCCcEEEecCCCCcc-CCcc----c-CCCCCccEEEEecCCCc-----cCChhccCCCCCCE
Q 004022 339 CKGLESFPR---TFLLGLSAMGLLHISDYAVRE-IPQE----I-AYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRF 404 (779)
Q Consensus 339 n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~-~p~~----l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~ 404 (779)
|.+...... ..+..+++|++|++++|.+++ .... + ...+.|++|++++|.++ .+...+..+++|++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 876543211 124467788888888887765 1111 1 12467888888888775 33445666678888
Q ss_pred EEcCCCCCCC
Q 004022 405 IHLEDFNMLQ 414 (779)
Q Consensus 405 L~Ls~n~~~~ 414 (779)
+++++|.+..
T Consensus 283 l~l~~N~l~~ 292 (319)
T cd00116 283 LDLRGNKFGE 292 (319)
T ss_pred EECCCCCCcH
Confidence 8888877664
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=2.2e-12 Score=151.75 Aligned_cols=209 Identities=23% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC-CCCCCC--CCCCCCCcEEEecCCc
Q 004022 102 PLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS-LRSFPS--NLHFVCPVTINFSYCV 178 (779)
Q Consensus 102 ~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~-l~~~p~--~~~l~~L~~L~L~~~~ 178 (779)
.....|........+...+-+|.+..+ +.+. ..++|++|-+.+|.. +..++. |..++.|+.||+++|.
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~--------~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHI--------AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred CccccccccchhheeEEEEeccchhhc--------cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 334455544555666666666666553 2222 334677776666652 334443 4557777777777776
Q ss_pred CccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcC
Q 004022 179 NLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 258 (779)
Q Consensus 179 ~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 258 (779)
.. .++|..++.|-+||+|+++++. +..+|..+.+++.|.+|++..+.....+|.....+
T Consensus 583 ~l--------------------~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 583 SL--------------------SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred cc--------------------CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 66 4445555555555555555543 23445555555555555555544444444444445
Q ss_pred ccCcEeecCCcCCCc---CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH---HHh-hcccCCcCCccccCcccc
Q 004022 259 EHLKRIYSDRTPITE---LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY---ILA-AASAISQLPSSVALSNML 331 (779)
Q Consensus 259 ~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~---~~~-~~~~~~~lp~~l~~l~~L 331 (779)
.+|++|.+....... .-..+.++.+|+.+....... .+-..+..+..|.. .+. .+......+..+..+.+|
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL 719 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc
Confidence 555555554433110 111123444444444433221 11111233333333 111 122333444445566666
Q ss_pred CeeeccCCCCC
Q 004022 332 RSLDSSHCKGL 342 (779)
Q Consensus 332 ~~L~l~~n~~~ 342 (779)
+.|.+.+|.+.
T Consensus 720 ~~L~i~~~~~~ 730 (889)
T KOG4658|consen 720 EELSILDCGIS 730 (889)
T ss_pred ceEEEEcCCCc
Confidence 66666666654
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=6.8e-12 Score=147.62 Aligned_cols=122 Identities=30% Similarity=0.359 Sum_probs=99.3
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC-Ccccc-cccCCCCCCcEEecccccCCcccchhhhcCccCcEee
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR-LKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~-~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 265 (779)
...+...+-+|.+..++....+ ++|++|-+.++.. ...++ ..|..++.|+.|+|++|...+.+|+.++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4567777888888888776654 4799999998863 33333 3477799999999999999999999999999999999
Q ss_pred cCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 266 SDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 266 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
++++.++.+|.+++++..|.+|++..+.....+|.....+.+|++
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 999999999999999999999999987776666655555666666
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=9.5e-10 Score=121.39 Aligned_cols=177 Identities=28% Similarity=0.417 Sum_probs=104.5
Q ss_pred CccEEEecCcCCcccCcccCCCC-CccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLT-DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.++.|++.+|.+..++...+.+. +|+.|++++|++ ..+|..+..+++|+.|++++|.+.. +|...+..++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheecc
Confidence 45666666666677777666664 777777777663 3333345566666666666654433 33333355666666666
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR 347 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~ 347 (779)
+|.+..+|..++....|++|.+++|... ..+..+
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------------------~~~~~~---------------------- 228 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSII------------------------ELLSSL---------------------- 228 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcce------------------------ecchhh----------------------
Confidence 6666666665444444555555554311 111122
Q ss_pred hhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC
Q 004022 348 TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 348 ~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
..+.++..+.+.+|.+..++..++.++++++|++++|.++.++. +..+.+|+.|+++++.+....+
T Consensus 229 ---~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 ---SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ---hhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 24444444555555555556666667777777777777777766 6777777777777766655544
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.5e-10 Score=119.71 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=106.4
Q ss_pred CCCCCccEEeeeCCCCCcccc--cccCCCCCCcEEecccccCCc--ccchhhhcCccCcEeecCCcCCCcCCcc--CCCC
Q 004022 208 ECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLE--HFPEILEKMEHLKRIYSDRTPITELPSS--FENL 281 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~i~~lp~~--l~~l 281 (779)
.++.+|+...|.++.. +..+ .....+++++.|+|++|-+.. .+......+++|+.|+++.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456666666666542 2222 234456667777776654432 2344556677777777777776643332 2346
Q ss_pred CCCCEEeccCCCCCCCCC-CCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEE
Q 004022 282 PGLEVLFVEDCSKLDNLP-DNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLL 359 (779)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 359 (779)
++|+.|.++.|.+...-- ..+..+++|+. .+.+++.+.........+..|++|+|++|.+...........++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 677777777776543211 11123334444 2333322222222233445566666666666655433334556666666
Q ss_pred EecCCCCcc--CCcc-----cCCCCCccEEEEecCCCccCC--hhccCCCCCCEEEcCCCCC
Q 004022 360 HISDYAVRE--IPQE-----IAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 360 ~Ls~~~l~~--~p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~ 412 (779)
+++.|.+.+ .|+. ...+++|++|++..|++..++ ..+..+++|+.|.+..|.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 666666665 3332 344566666666666665444 2344455555555444443
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.95 E-value=2.4e-09 Score=113.35 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecC-CCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c 431 (779)
+.+++.|++++|.++.+|. -.++|++|.+++| +++.+|..+ .++|+.|++++|..+. .++.+|+.|++. +
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~---sLP~sLe~L~L~-~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS---GLPESVRSLEIK-G 121 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc---ccccccceEEeC-C
Confidence 4555566666555555551 1234555555543 344444332 1345555555443222 222334444443 2
Q ss_pred CCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC--cccC-CCCCCccEEEEecCCCCCCccccc-cCC
Q 004022 432 KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML--RSLP-ELPLCLQLLTVRNCNRLQSLPEIL-LCL 507 (779)
Q Consensus 432 ~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L--~~l~-~~~~sL~~L~i~~C~~L~~lp~~l-~~L 507 (779)
.....++.+| ++|+.|.+.++... ..++ .+|++|+.|.|.+|..+. +|+.+ .+|
T Consensus 122 n~~~~L~~LP---------------------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SL 179 (426)
T PRK15386 122 SATDSIKNVP---------------------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESL 179 (426)
T ss_pred CCCcccccCc---------------------chHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccC
Confidence 2223344444 44555554332211 1112 133455555555555332 33322 245
Q ss_pred cccchhhhhhhccCCCCCcccccccccccceeecccccccCcc
Q 004022 508 QELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGK 550 (779)
Q Consensus 508 ~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C~~l~~~ 550 (779)
+.|++..+ .|..+......+|..+ .+.|.+|.++..+
T Consensus 180 k~L~ls~n-----~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 180 QSITLHIE-----QKTTWNISFEGFPDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred cEEEeccc-----ccccccCccccccccc-EechhhhcccCHH
Confidence 55554432 1222222333455556 8889999887643
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=9.8e-10 Score=121.29 Aligned_cols=197 Identities=21% Similarity=0.261 Sum_probs=136.7
Q ss_pred EEEccCCCC-CCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCC-CCcEEeccCCCCCCCCC-CCCCCCCCcE
Q 004022 95 YLHWDTYPL-RTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK-YLSALSFKGCQSLRSFP-SNLHFVCPVT 171 (779)
Q Consensus 95 ~L~l~~n~l-~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~-~L~~L~Ls~n~~l~~~p-~~~~l~~L~~ 171 (779)
.+....+.+ ..+........+..|++.+|.+++ +|.....+. +|+.|++++|. ...+| ....+++|+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~--------i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD--------IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc--------Cccccccchhhcccccccccc-hhhhhhhhhccccccc
Confidence 455666655 333333355666677777766666 455555553 67777776666 33332 4555667777
Q ss_pred EEecCCcCccccCC--cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 172 INFSYCVNLIEFPQ--ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 172 L~L~~~~~l~~~~~--~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
|++++|+.....+. ...+|+.|++++|.+..+|..++....|++|.+++|.... .+..+.++.++..+.+.++...
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~- 245 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE- 245 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-
Confidence 77776654432222 4566777777777788898877777789999999886333 3445777888888887765543
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 303 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~ 303 (779)
.++..++.++++++|++++|.++.++. ++.+.+++.|+++++......|....
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 347778889999999999999999988 89999999999999888776665433
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=3.9e-11 Score=127.46 Aligned_cols=171 Identities=22% Similarity=0.270 Sum_probs=119.9
Q ss_pred CceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.-...+++.|++..+|..+ .+..|+.|.|.+|.|.. +|.++.++..|++|||+.|+ +..+|.-.-.--|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLk 146 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--------IPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLK 146 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcccee--------cchhhhhhhHHHHhhhccch-hhcCChhhhcCcce
Confidence 3456778888888888777 66778888888888776 67788888888888888887 44444433233344
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|.++ +|+++.+|..++.+.+|..|+.+.|. +..+|..++++.+|+.|.+..|... .
T Consensus 147 vli~s---------------------NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 147 VLIVS---------------------NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred eEEEe---------------------cCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-h
Confidence 44444 44557777777777777788877776 4455666777778888877776544 3
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
+|+.+..+ .|..||++.|++..+|-.|.+|+.|++|-|.+|++.
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 55555544 477788888888888888888888888888776653
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.7e-09 Score=102.50 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCV 178 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~ 178 (779)
|+.+|...++.++++|+|++|.|+.+ +.++ .+.+|+.|+|++|. ++.++.+..+++|++|++++|.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I---------e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI---------ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS-
T ss_pred cccccccccccccccccccccccccc---------cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC
Confidence 33444433444455555555555432 1122 24455555555554 2333344444444444444443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=5.2e-10 Score=119.13 Aligned_cols=189 Identities=23% Similarity=0.299 Sum_probs=96.1
Q ss_pred EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCC
Q 004022 192 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPI 271 (779)
Q Consensus 192 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 271 (779)
..+++.|++.++|..+..+..|+.+.+..|. ...+|..++++..|..|+|+.|++. .+|..++.++ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 3455555555555554444445555444433 2334444444444444444443322 2333333332 44444444444
Q ss_pred CcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhcc
Q 004022 272 TELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL 351 (779)
Q Consensus 272 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 351 (779)
+.+|..++.+..|..|+.+. +.+..+|..++.+.+|+.|++..|++...++.. .
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~------------------------nei~slpsql~~l~slr~l~vrRn~l~~lp~El--~ 209 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSK------------------------NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL--C 209 (722)
T ss_pred ccCCcccccchhHHHhhhhh------------------------hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH--h
Confidence 44444444444444444443 344455555555556666666655555443332 1
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc---cCCCCCCEEEcCCC
Q 004022 352 GLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII---KQMSQLRFIHLEDF 410 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~Ls~n 410 (779)
.-.|..||++.|++..+|..|..|..|++|-|.+|.+++-|..+ +...-.|+|+..-|
T Consensus 210 -~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 -SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 23366667777777777777777777777777777777666443 22333455555555
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.7e-10 Score=115.42 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCceEEEccCCCCCCCCC--CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC--CC
Q 004022 91 KKLRYLHWDTYPLRTLPS--NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN--LH 165 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~--~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~--~~ 165 (779)
.+||...+++++....+. .. .+++++.|||+.|-+.. |+. +-.-...|++|+.|+|+.|++..-.... ..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFP----VLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHH----HHHHHHhcccchhcccccccccCCccccchhh
Confidence 578888888888877774 23 78888888888887765 221 2223447888888888888754433332 23
Q ss_pred CCCCcEEEecCCcCcc----ccCCcCCCccEEEecCcC-CcccCcccCCCCCccEEeeeCCCCCccc-ccccCCCCCCcE
Q 004022 166 FVCPVTINFSYCVNLI----EFPQISGKVTRLYLGQSA-IEEVPSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVT 239 (779)
Q Consensus 166 l~~L~~L~L~~~~~l~----~~~~~~~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~ 239 (779)
++.|+.|.++.|.... .+...+++|..|+|..|. +..-..+...+..|+.|+|++|.+...- -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 6778888888886543 222334555566665553 2111122233455666666665543321 012444555555
Q ss_pred EecccccCCcc-cchh-----hhcCccCcEeecCCcCCCcCCc--cCCCCCCCCEEeccC
Q 004022 240 LILLGCLNLEH-FPEI-----LEKMEHLKRIYSDRTPITELPS--SFENLPGLEVLFVED 291 (779)
Q Consensus 240 L~L~~~~~~~~-~p~~-----l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~ 291 (779)
|+++.|.+... .|+. ...+++|++|++..|+|.++++ .+..+++|+.|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 55555544321 1221 2344556666666666554443 133344444444433
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=3.8e-09 Score=100.19 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=37.4
Q ss_pred hhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCC
Q 004022 44 FTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCS 123 (779)
Q Consensus 44 f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n 123 (779)
+.+..++|.|+|.+|.|+.| +++.....+|+.|++++|.+++++..-.+++|++|++++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--------------------e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--------------------ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp -----------------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS
T ss_pred cccccccccccccccccccc--------------------cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC
Confidence 34555789999999988522 2344222589999999999999886558899999999999
Q ss_pred CCCCccCCCCcccCccc-cCCCCCcEEeccCCCCCC--CCCCCCCCCCCcEEEecCCcC
Q 004022 124 KVEQPWEGEKACVPSSI-QNFKYLSALSFKGCQSLR--SFPSNLHFVCPVTINFSYCVN 179 (779)
Q Consensus 124 ~i~~l~~g~~~~lp~~~-~~l~~L~~L~Ls~n~~l~--~~p~~~~l~~L~~L~L~~~~~ 179 (779)
+|+++ ...+ ..+++|++|++++|++.. .+-.+..+++|+.|++.+|+.
T Consensus 75 ~I~~i--------~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 75 RISSI--------SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---S---------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCcc--------ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 99874 3333 368899999999988432 233345577788888877765
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2e-09 Score=105.84 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=16.9
Q ss_pred cCccCcEeecCCcCCCcCC--ccCCCCCCCCEEeccCCCC
Q 004022 257 KMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~ 294 (779)
++-+|..||+++|+|..+. .+++++|.|+++.|.+|++
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3334444444444444332 2344555555555544443
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=4.5e-08 Score=103.89 Aligned_cols=136 Identities=22% Similarity=0.342 Sum_probs=93.1
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCC-CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCc
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCN 474 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~ 474 (779)
+..+.+++.|++++| .+..+|.++.+|++|.+++|..+..+|. +|.+|++|++++|..+..+| ++|+.|++. +.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~-~n 122 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIK-GS 122 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeC-CC
Confidence 334566666666666 4455566666777788888888777774 67788888888886555554 678888885 45
Q ss_pred CCcccCCCCCCccEEEEecCCCC--CCccccc-cCCcccchhhhhhhccCCCCCcccccccccccceeecccc
Q 004022 475 MLRSLPELPLCLQLLTVRNCNRL--QSLPEIL-LCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNC 544 (779)
Q Consensus 475 ~L~~l~~~~~sL~~L~i~~C~~L--~~lp~~l-~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C 544 (779)
....++.+|++|+.|.+.+++.. ..+|..+ .+|+.|.+.+|.. ..+|+.+|.+++.|.+.++
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~--------i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN--------IILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc--------ccCcccccccCcEEEeccc
Confidence 55567778889999998664422 2334333 4788888887632 2467778888888888664
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=8.1e-10 Score=111.38 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCC
Q 004022 234 LRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~ 293 (779)
-+.|+++...+|..-. .+...+...+.|+.+.+..|.|. -+...+..+++|+.|+|.+|.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 3445555555444321 22334455555666666555554 122334555555555555544
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.3e-09 Score=104.38 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
..|..||+++|.|+.+..+. -.+.++.|++++|.|..+ ..+..+++|+.|||++|.+......-..+-|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v---------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV---------QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee---------hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 46778888888888877776 457788888888887753 33667788888888887633222222335555
Q ss_pred cEEEecCCc
Q 004022 170 VTINFSYCV 178 (779)
Q Consensus 170 ~~L~L~~~~ 178 (779)
+.|.|++|.
T Consensus 355 KtL~La~N~ 363 (490)
T KOG1259|consen 355 KTLKLAQNK 363 (490)
T ss_pred eeeehhhhh
Confidence 555555553
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=2e-08 Score=101.48 Aligned_cols=198 Identities=18% Similarity=0.232 Sum_probs=108.2
Q ss_pred ccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEeccccc---CCcccch-------hhhcCccCcEeecCCcCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCL---NLEHFPE-------ILEKMEHLKRIYSDRTPI 271 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~---~~~~~p~-------~l~~l~~L~~L~L~~n~i 271 (779)
.+..+..++.|++++|.+-.. +...+.+.++|+..++++-- ....+|+ .+...++|++|+||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 445677888999999876432 33446667788888887621 1122333 344566888888888877
Q ss_pred C-cCC----ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC
Q 004022 272 T-ELP----SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 346 (779)
Q Consensus 272 ~-~lp----~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 346 (779)
. .-+ .-+..+..|++|.|.+|.+...--..++ ..|...- . ......-+.|+++....|++.....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~-~-------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA-V-------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH-H-------HhccCCCcceEEEEeeccccccccH
Confidence 6 222 2245577777777777654321111010 0011100 0 0112334567777777766544321
Q ss_pred h---hhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCC
Q 004022 347 R---TFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 347 ~---~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
. ..+...+.|+.+.+..|.+.. +...+..+++|+.|||+.|-|+ .+...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 1 124445666666666666543 2334566666666666666665 23344556666666666555443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=4.1e-07 Score=105.44 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=56.8
Q ss_pred ccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccC
Q 004022 213 LEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVED 291 (779)
Q Consensus 213 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~ 291 (779)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666666666666666666666666666666666666666666666666666665 4555566666666666666
Q ss_pred CCCCCCCCCCCC
Q 004022 292 CSKLDNLPDNIG 303 (779)
Q Consensus 292 ~~~~~~lp~~l~ 303 (779)
|++.+.+|..+.
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 666666665544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=2.6e-08 Score=110.26 Aligned_cols=174 Identities=23% Similarity=0.260 Sum_probs=105.5
Q ss_pred CCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL 164 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~ 164 (779)
+..+ .+|..|++.+|.++.+.... .+.+|++|++++|.|++++. +..++.|+.|++++|. +..+..+.
T Consensus 91 l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---------l~~l~~L~~L~l~~N~-i~~~~~~~ 159 (414)
T KOG0531|consen 91 LSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---------LSTLTLLKELNLSGNL-ISDISGLE 159 (414)
T ss_pred cccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccc---------hhhccchhhheeccCc-chhccCCc
Confidence 4444 57888888888888777733 77888888888888877633 2266667788888877 45555555
Q ss_pred CCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecc
Q 004022 165 HFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 243 (779)
Q Consensus 165 ~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 243 (779)
.+++|+.+++++|.. ..+... ...+.+|+.+.+.+|.+...- .+..+..+..+++.
T Consensus 160 ~l~~L~~l~l~~n~i---------------------~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRI---------------------VDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLL 216 (414)
T ss_pred cchhhhcccCCcchh---------------------hhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcc
Confidence 566666666666655 333332 345556666666665533221 12223333333444
Q ss_pred cccCCcccchhhhcCc--cCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 244 GCLNLEHFPEILEKME--HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~--~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
.|.+...-+ +..+. +|+.+++++|.+..++..+..+..+..|++.++...
T Consensus 217 ~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 217 DNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 444332111 11112 377888888888877666777888888888776553
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.7e-07 Score=103.16 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC
Q 004022 145 YLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR 223 (779)
Q Consensus 145 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (779)
.++.|+|++|.+.+.+|. +..+++|+.|+|++|... ..+|..++.+++|+.|+|++|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------------------g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------------------GNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------------------CcCChHHhCCCCCCEEECCCCCC
Confidence 467788888887666665 556788888888877665 56777778888888888888888
Q ss_pred CcccccccCCCCCCcEEecccccCCcccchhhhcC-ccCcEeecCCcCC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM-EHLKRIYSDRTPI 271 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l-~~L~~L~L~~n~i 271 (779)
.+.+|..++.+++|+.|+|++|.+.+.+|..+..+ .++..+++.+|..
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 88888888888888888888888888888777653 4566777777754
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=3.6e-07 Score=71.09 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=46.5
Q ss_pred CceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
+|++|++++|.++.+|.. | .+++|++|++++|.++.+ -|.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEeCcCCc
Confidence 788888888888888864 4 788888888888888875 55678888888888888876
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=8e-08 Score=106.34 Aligned_cols=171 Identities=20% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
..++.+.++.|.++.+-... .+++|+.|++.+|+|+.+ ...+..+++|++|++++|. ++.+..+..++.|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i--------~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI--------ENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLL 142 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc--------ccchhhhhcchheeccccc-cccccchhhccch
Confidence 35556666666666633323 667777777777777663 2224466777777777776 4444444555555
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~ 248 (779)
+.|++++|. |..+. .+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 143 ~~L~l~~N~---------------------i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 143 KELNLSGNL---------------------ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhheeccCc---------------------chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 555555554 45544 44558999999999998765544 2 467899999999998765
Q ss_pred cccchhhhcCccCcEeecCCcCCCcCCccCCCCCC--CCEEeccCCCCCC
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPG--LEVLFVEDCSKLD 296 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~~~~~~ 296 (779)
.. +.+..+..+..+++..|.++.+-. +..+.. |+.++++++.+..
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccc
Confidence 42 233344455556888888886643 223333 8999999987654
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.6e-06 Score=67.38 Aligned_cols=57 Identities=28% Similarity=0.350 Sum_probs=30.3
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccc
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 245 (779)
+|+.|++++|.+..+|. .+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 4455555555555555544444444555555555555554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=4.4e-07 Score=89.74 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred CceEEEccCCCCCCCCCC--C--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC-CCC
Q 004022 92 KLRYLHWDTYPLRTLPSN--F--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN-LHF 166 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~--~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~-~~l 166 (779)
-+..|-+.++.|...... | ....+++|||.+|.|+. |.. +..-+.+|+.|++|+|+.|.+...+... ...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Wse----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSE----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHH----HHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 444566667766554433 2 67788999999999886 544 3344568899999999888865544333 345
Q ss_pred CCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCC
Q 004022 167 VCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCK 222 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~ 222 (779)
.+|+.|.|.|..... +.....+..+++++.|.++.|.
T Consensus 121 ~nl~~lVLNgT~L~w-------------------~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSW-------------------TQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cceEEEEEcCCCCCh-------------------hhhhhhhhcchhhhhhhhccch
Confidence 566666665543221 3334445566666666666653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.9e-07 Score=91.02 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccEEEecCcCCc--ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 190 VTRLYLGQSAIE--EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 190 L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
|+.|+|++..|+ .+..-+..+.+|+.|.+.++++...+...+.+-.+|+.|+|+.|+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 444444444442 23333344455555555555544444444444555555555555443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.7e-07 Score=89.54 Aligned_cols=165 Identities=24% Similarity=0.183 Sum_probs=114.5
Q ss_pred cccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecC-CCccC--ChhccCCCCCCE
Q 004022 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGN-NFESL--PAIIKQMSQLRF 404 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n-~l~~l--p~~l~~l~~L~~ 404 (779)
+.|+.||++...++..--...+..+..|+.|.+.++.+.+ +-..++.-.+|+.|+|+++ .+++. .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588899988877766555557788999999999999988 6677888899999999996 56633 345789999999
Q ss_pred EEcCCCCCCCcCC-----CCCCCccEEEEecCCCCCCCC-------CCCCCccEEEeeCCCCCCCC--CC--CCCCccEE
Q 004022 405 IHLEDFNMLQSLP-----ELPLCLKYLHLIDCKMLQSLP-------VLPFCLESLDLTGCNMLRSL--PE--LPLCLQYL 468 (779)
Q Consensus 405 L~Ls~n~~~~~~~-----~~~~~L~~L~l~~c~~l~~lp-------~l~~~L~~L~ls~n~~l~~l--~~--~~~~L~~L 468 (779)
|+|+.|...+..- ..-+.|+.|++++|..--... ..| .|.+||+|.|..+..- .. .++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccccccccCchHHHHHHhcchheee
Confidence 9999998766442 234778889999886422111 123 6777777777655431 11 23677777
Q ss_pred eeecCcCCccc----CCCCCCccEEEEecC
Q 004022 469 NLEDCNMLRSL----PELPLCLQLLTVRNC 494 (779)
Q Consensus 469 ~l~~c~~L~~l----~~~~~sL~~L~i~~C 494 (779)
.++.|-.+--- -...++|..|++.||
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77777544210 023467777777776
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=3e-07 Score=100.95 Aligned_cols=129 Identities=19% Similarity=0.087 Sum_probs=84.2
Q ss_pred CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchh-hhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~ 267 (779)
+|...+.++|.+..+..++.-++.|+.|||++|++...- .+..++.|++|+|++|.+.. +|.. ...+ .|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence 567777777888878778877888888888888765542 46677888888888766543 2321 2222 37778888
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+|.++++-. +.++.+|+.||+++|-+.+. ..| .-+..+..|+.|.+.||++.-.
T Consensus 241 nN~l~tL~g-ie~LksL~~LDlsyNll~~h-----seL-----------------~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLRG-IENLKSLYGLDLSYNLLSEH-----SEL-----------------EPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhhh-HHhhhhhhccchhHhhhhcc-----hhh-----------------hHHHHHHHHHHHhhcCCccccC
Confidence 887777643 67777788888777543221 000 0123456677888888876543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=2e-06 Score=94.60 Aligned_cols=116 Identities=22% Similarity=0.156 Sum_probs=86.5
Q ss_pred hcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC
Q 004022 314 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393 (779)
Q Consensus 314 ~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 393 (779)
.++.+..+...+.-++.|+.|++++|++...- .+..++.|++|||++|.+..+|..-..--.|+.|.|++|.++++-
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR 248 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh
Confidence 34445555666777888999999999887654 366899999999999999988764322234999999999988876
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKM 433 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~ 433 (779)
.+.++.+|+.||+++|-+.+.-.- .+..|+.|++.+|+.
T Consensus 249 -gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 478899999999999876653221 235677788888764
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.5e-05 Score=54.95 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC
Q 004022 355 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 393 (779)
+|++|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666655544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=1.6e-05 Score=79.01 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred CCCCCcEEecccccCCc--ccchhhhcCccCcEeecCCcCCCcCCccC-CCCCCCCEEeccCCCCCCC-CCCCCCCchhH
Q 004022 233 KLRSLVTLILLGCLNLE--HFPEILEKMEHLKRIYSDRTPITELPSSF-ENLPGLEVLFVEDCSKLDN-LPDNIGSLEYL 308 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L 308 (779)
..+.++.|+|.+|.+.. ++...+.+++.|+.|+++.|++...-..+ ..+.+|+.|.|.+..+... .-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35677888888876653 45556778888888888888776432222 3456778887776544321 12223344444
Q ss_pred HH-HHhhcccCCc-CC-cccc-CccccCeeeccCCCCCCccCh-hhccCCCCCcEEEecCCCCccC--CcccCCCCCccE
Q 004022 309 YY-ILAAASAISQ-LP-SSVA-LSNMLRSLDSSHCKGLESFPR-TFLLGLSAMGLLHISDYAVREI--PQEIAYLSSLEI 381 (779)
Q Consensus 309 ~~-~~~~~~~~~~-lp-~~l~-~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~~--p~~l~~l~~L~~ 381 (779)
+. .++.++.... +. .... .-+.+++|....|........ .....+|++..+.+..|.+.+. ......++.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 44 3332211000 00 0000 011233333333321110000 0023466777777777766653 234555666677
Q ss_pred EEEecCCCccCC--hhccCCCCCCEEEcCCCCCCC
Q 004022 382 LYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 382 L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
|+|+.|++.+.. +.+..+++|..|.++++++..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777777776544 446677777776666555543
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.59 E-value=2e-06 Score=89.21 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=17.6
Q ss_pred CCcEEeccCCCCCCCCCC---CCCCCCCcEEEecCCcCc
Q 004022 145 YLSALSFKGCQSLRSFPS---NLHFVCPVTINFSYCVNL 180 (779)
Q Consensus 145 ~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l 180 (779)
.|+.|.+++|.-...-+- ...++++++|.+.+|..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i 177 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI 177 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceec
Confidence 455566666553322111 123566666666666543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=0.00012 Score=52.18 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=32.3
Q ss_pred CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
++|++|++++|+++.+|..+++|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999998765
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.0002 Score=67.59 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=60.0
Q ss_pred CCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC--CCCCCC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL--RSFPSN 163 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l--~~~p~~ 163 (779)
+.....+.-.+|++.|.+..++..-.++.|..|.|.+|+|+.+ -|.--..+++|+.|.|.+|.+. +++..+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-------~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-------DPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceee-------ccchhhhccccceEEecCcchhhhhhcchh
Confidence 3334457778888888888777666888888888888888876 2322335677888888887732 234445
Q ss_pred CCCCCCcEEEecCCcC
Q 004022 164 LHFVCPVTINFSYCVN 179 (779)
Q Consensus 164 ~~l~~L~~L~L~~~~~ 179 (779)
..++.|+.|.+-+|+.
T Consensus 110 a~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccCCccceeeecCCch
Confidence 6677777777777654
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.45 E-value=6.1e-06 Score=85.72 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCCCCccEEEEecCCCc--cCChhccCCCCCCEEEcCCCCCC
Q 004022 374 AYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 374 ~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
..+..|+.+.|+++... ..-+.+..+++|+.+++.+|...
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 34455555555555433 22234555556666666655544
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.35 E-value=7.7e-06 Score=80.11 Aligned_cols=61 Identities=21% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCCc------CCccCCCCCCCCEEeccCCCC
Q 004022 234 LRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPITE------LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~~------lp~~l~~l~~L~~L~L~~~~~ 294 (779)
-+.|++.....|++.. .....+..-.+|+++.+..|.|.. +-..+..+.+|+.|+|.+|.+
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 3445555555544321 112223334567777777776651 112244566777777777654
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.32 E-value=3.8e-05 Score=75.42 Aligned_cols=151 Identities=20% Similarity=0.188 Sum_probs=84.4
Q ss_pred hhhcCccCcEeecCCcCCC-cCCc----cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCc
Q 004022 254 ILEKMEHLKRIYSDRTPIT-ELPS----SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS 328 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~-~lp~----~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l 328 (779)
.+-++++|+..+|+.|.+. +.|. .++.-+.|++|.+++|..-..--..++ +.|.+ +..+.. ...-
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~-la~nKK-------aa~k 156 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH-LAYNKK-------AADK 156 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH-HHHHhh-------hccC
Confidence 3445566666666666665 3332 245667788888877643211111111 01111 111111 2234
Q ss_pred cccCeeeccCCCCCCccCh---hhccCCCCCcEEEecCCCCcc------CCcccCCCCCccEEEEecCCCcc-----CCh
Q 004022 329 NMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVRE------IPQEIAYLSSLEILYLSGNNFES-----LPA 394 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~~-----lp~ 394 (779)
|.|++.....|++...... ..+..-.+|+.+.+..|.|.. +-..+..+.+|+.|||+.|-++. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 5677888877776543221 112333578888888887654 12235567888888888887772 234
Q ss_pred hccCCCCCCEEEcCCCCCCC
Q 004022 395 IIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 395 ~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+...+.|+.|.+.+|-+..
T Consensus 237 al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred Hhcccchhhhccccchhhcc
Confidence 45667778887777776544
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=4.2e-06 Score=73.59 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred CCceEEEccCCCCCCCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 168 (779)
.+|...++++|.++++|..| .++-++.|+|++|.|++ +|..+..++.|+.|+++.|.+......+..+.+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--------vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--------VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--------chHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 47888999999999999888 67789999999999998 788899999999999999985544333445666
Q ss_pred CcEEEecCCcC
Q 004022 169 PVTINFSYCVN 179 (779)
Q Consensus 169 L~~L~L~~~~~ 179 (779)
|-.|+..+|..
T Consensus 125 l~~Lds~~na~ 135 (177)
T KOG4579|consen 125 LDMLDSPENAR 135 (177)
T ss_pred HHHhcCCCCcc
Confidence 66666655543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00046 Score=65.26 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=70.1
Q ss_pred ceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCC-CCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH-FVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~-l~~L~ 170 (779)
=+.+++.++.+..+.... ...+...+||++|.+..+ ..|..++.|.+|.|..|++...-|.+.. +++|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l---------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL---------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc---------ccCCCccccceEEecCCcceeeccchhhhccccc
Confidence 455666666654443322 455667777777777653 2233666777777777765544444333 44555
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccc---cccCCCCCCcEEecccc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRIS---TSFCKLRSLVTLILLGC 245 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~L~~~ 245 (779)
.|.+.+|. |.++-+ .+..+++|++|.+-+|.....-- -.+..+++|+.||..+-
T Consensus 92 ~L~LtnNs---------------------i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 92 TLILTNNS---------------------IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEecCcc---------------------hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55555554 344332 34556778888877776433211 12556777777777653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=9.5e-05 Score=85.74 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCCcEEeccCCCCCC-CCCC--CCCCCCCcEEEecCCcCc----cccCCcCCCccEEEecCcCCcccCcccCCCCCccEE
Q 004022 144 KYLSALSFKGCQSLR-SFPS--NLHFVCPVTINFSYCVNL----IEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVL 216 (779)
Q Consensus 144 ~~L~~L~Ls~n~~l~-~~p~--~~~l~~L~~L~L~~~~~l----~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 216 (779)
.+|++||++|..... ..|. ...+|+|+.|.+.+-... ..+-..+++|..||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 578888888865432 2332 223888888888874332 23445677888888888888877 678888888888
Q ss_pred eeeCCCCCc-ccccccCCCCCCcEEecccccCCccc------chhhhcCccCcEeecCCcCCC
Q 004022 217 DLRGCKRLK-RISTSFCKLRSLVTLILLGCLNLEHF------PEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 217 ~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~------p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+.+-.+.. ..-..+.+|++|+.||+|........ -+.-..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 887754432 11123556888888888875543321 111224677777777777665
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00013 Score=84.50 Aligned_cols=143 Identities=24% Similarity=0.294 Sum_probs=86.9
Q ss_pred cccCeeeccCCCCCCc-cChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEE
Q 004022 329 NMLRSLDSSHCKGLES-FPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFI 405 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 405 (779)
.+|+.|+++|...... .+.....-+|+|+.|.+++-.+.. +.....++|+|..||+|+++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677788877544322 233334567888888888765543 334456778888888888888777 567888888888
Q ss_pred EcCCCCCCC--cCCC--CCCCccEEEEecCCCCCCC----------CCCCCCccEEEeeCCCCCCCCCC----CCCCccE
Q 004022 406 HLEDFNMLQ--SLPE--LPLCLKYLHLIDCKMLQSL----------PVLPFCLESLDLTGCNMLRSLPE----LPLCLQY 467 (779)
Q Consensus 406 ~Ls~n~~~~--~~~~--~~~~L~~L~l~~c~~l~~l----------p~l~~~L~~L~ls~n~~l~~l~~----~~~~L~~ 467 (779)
.+.+-.+.. .+-. .+.+|+.||++.-+....- -.+| .|+.||.|+..+.+.+-+ ..++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777755543 1112 2366777777665543321 1244 777787777666543322 2255555
Q ss_pred EeeecC
Q 004022 468 LNLEDC 473 (779)
Q Consensus 468 L~l~~c 473 (779)
+.+-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 555443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.93 E-value=3.6e-05 Score=67.89 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=89.0
Q ss_pred ccccEEEEEeecccccccccCh--hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEE
Q 004022 20 GTDAIEGIFLDLSKIKGINLDP--RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLH 97 (779)
Q Consensus 20 g~~~i~~i~Ld~s~~~~~~l~~--~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~ 97 (779)
+.++.|.=.+|++..+.+.+.. ..+.+...|+..+|++|.+. .+|+.+...++.++.|+
T Consensus 23 cedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-------------------~fp~kft~kf~t~t~lN 83 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-------------------KFPKKFTIKFPTATTLN 83 (177)
T ss_pred hHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-------------------hCCHHHhhccchhhhhh
Confidence 3445556667777776554543 33456667888899999883 67777776666899999
Q ss_pred ccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC
Q 004022 98 WDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP 161 (779)
Q Consensus 98 l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p 161 (779)
+.+|.+.++|..+ .++.|+.|+++.|.+.. .|..+..|.+|-.|+..+|.. ..+|
T Consensus 84 l~~neisdvPeE~Aam~aLr~lNl~~N~l~~--------~p~vi~~L~~l~~Lds~~na~-~eid 139 (177)
T KOG4579|consen 84 LANNEISDVPEELAAMPALRSLNLRFNPLNA--------EPRVIAPLIKLDMLDSPENAR-AEID 139 (177)
T ss_pred cchhhhhhchHHHhhhHHhhhcccccCcccc--------chHHHHHHHhHHHhcCCCCcc-ccCc
Confidence 9999999999988 89999999999999987 688888899999999988873 3443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0022 Score=63.40 Aligned_cols=104 Identities=22% Similarity=0.168 Sum_probs=64.9
Q ss_pred CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC--CCcc-CCcccCCCCCccEEEEecCCCccCC--hhccCCCC
Q 004022 327 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY--AVRE-IPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQ 401 (779)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~--~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~ 401 (779)
.+..|+.|++.++.+++... +..+++|+.|.++.| .+.. ++.....+|+|++|++++|++..+. ..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN---FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc---CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 44556666666655544322 446778888888888 4444 4444555688999999999877432 23667777
Q ss_pred CCEEEcCCCCCCCcC------CCCCCCccEEEEecCCC
Q 004022 402 LRFIHLEDFNMLQSL------PELPLCLKYLHLIDCKM 433 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~------~~~~~~L~~L~l~~c~~ 433 (779)
|..|++.+|.-...- ..++++|++|+-.++..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 888888877665521 12445666665555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0042 Score=61.46 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC--CCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL--RSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l--~~~p~~~~l~~ 168 (779)
..|+.|.+.+..++++...-.+++|+.|.++.|...-. .| ++....++++|++|++++|++. ..++.+..+.+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~-~~----l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS-GG----LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCccccc-cc----ceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 46777777777776665555777888888888833211 01 3333445688888888888743 34555566777
Q ss_pred CcEEEecCCcCc
Q 004022 169 PVTINFSYCVNL 180 (779)
Q Consensus 169 L~~L~L~~~~~l 180 (779)
|..|++..|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 888888887654
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.82 E-value=0.0038 Score=70.80 Aligned_cols=89 Identities=27% Similarity=0.293 Sum_probs=42.0
Q ss_pred cCCCCCccEEeeeCC-CCCcccc----cccCCCCCCcEEecccccC-Ccccchhhh-cCccCcEeecCCcC-CC--cCCc
Q 004022 207 IECLTDLEVLDLRGC-KRLKRIS----TSFCKLRSLVTLILLGCLN-LEHFPEILE-KMEHLKRIYSDRTP-IT--ELPS 276 (779)
Q Consensus 207 l~~l~~L~~L~L~~~-~~~~~lp----~~l~~l~~L~~L~L~~~~~-~~~~p~~l~-~l~~L~~L~L~~n~-i~--~lp~ 276 (779)
....+.|+.|++++| ......+ .....+++|+.|+++++.. ....-..+. .+++|++|.+.++. ++ .+-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 344556666666552 2111111 1123345666666666552 222222222 25566666655444 33 2222
Q ss_pred cCCCCCCCCEEeccCCCCC
Q 004022 277 SFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~~~ 295 (779)
....+++|++|++++|...
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 2445666777777666544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.00059 Score=67.48 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=64.8
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC--hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L 405 (779)
+.+.+.|+..||.+...-- ...++.|+.|.|+-|.++.+. .+..++.|++|+|..|.|.++. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4556778888887655321 347888899999988888753 3567888999999999888776 347888999998
Q ss_pred EcCCCCCCCcCCC
Q 004022 406 HLEDFNMLQSLPE 418 (779)
Q Consensus 406 ~Ls~n~~~~~~~~ 418 (779)
.|..|+-.+.-+.
T Consensus 94 WL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ 106 (388)
T ss_pred hhccCCcccccch
Confidence 8888877665543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.20 E-value=0.065 Score=48.36 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred cChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCc
Q 004022 39 LDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLV 116 (779)
Q Consensus 39 l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~ 116 (779)
+...+|.++++|+.+.+.. .+ ..+++..+....+|+.+.+.++ +..++.. | .+.+|+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~-------------------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~ 61 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI-------------------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLE 61 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T---------------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-E
T ss_pred ECHHHHhCCCCCCEEEECC-Ce-------------------eEeChhhccccccccccccccc-ccccceeeeecccccc
Confidence 5567788888888888763 23 2455544444357777777764 6666654 3 566777
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecC
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSY 176 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~ 176 (779)
.+.+.. .+..+ -...|..+++|+.+++..+ ...++. +.+. +|+.+.+..
T Consensus 62 ~i~~~~-~~~~i-------~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 62 SITFPN-NLKSI-------GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETS-TT-EE--------TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccc-ccccc-------ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777765 44433 2234556777777777553 222222 3334 666665543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.96 E-value=0.0054 Score=69.50 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=95.0
Q ss_pred CCCCCccEEeeeCCCCCc-ccccccC-CCCCCcEEecccccC-Cc-ccchhhhcCccCcEeecCCcCCC---cCCccCCC
Q 004022 208 ECLTDLEVLDLRGCKRLK-RISTSFC-KLRSLVTLILLGCLN-LE-HFPEILEKMEHLKRIYSDRTPIT---ELPSSFEN 280 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~-~lp~~l~-~l~~L~~L~L~~~~~-~~-~~p~~l~~l~~L~~L~L~~n~i~---~lp~~l~~ 280 (779)
..+.+|+.|+++++.... ..-..+. .+++|++|.+.+|.. .. .+-.....+++|++|+++++... .+.....+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 345677777777776322 1111122 266777777777763 22 23344556677888887765543 12222334
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC---CcCCccccCccccCeeeccCCCCCCccChhhccCCCCC
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI---SQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAM 356 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~---~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 356 (779)
+++|+.|.+..+.. +..++. .+.++... .........+++++.+.+..+..........+.+++.|
T Consensus 320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 55555554433221 333333 22222221 11223345677788888877773222212334455555
Q ss_pred cEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC--hhccC-CCCCCEEEcCCCCCCC
Q 004022 357 GLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQ-MSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 357 ~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~-l~~L~~L~Ls~n~~~~ 414 (779)
+ ..+..+ ......++.|+++.+...+.. ..... +..++.+++.++....
T Consensus 390 ~-~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 390 T-ESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred c-hHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2 222111 112223788888887654322 11222 6777888888876654
No 69
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=94.45 E-value=0.025 Score=32.25 Aligned_cols=20 Identities=65% Similarity=0.994 Sum_probs=18.1
Q ss_pred CCcEEECCCCCCCCccCCCC
Q 004022 114 NLVELNLRCSKVEQPWEGEK 133 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~ 133 (779)
+|++|+|.+++++.+|+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999973
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.18 E-value=0.017 Score=34.25 Aligned_cols=19 Identities=53% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccEEEEecCCCccCChhcc
Q 004022 379 LEILYLSGNNFESLPAIIK 397 (779)
Q Consensus 379 L~~L~Ls~n~l~~lp~~l~ 397 (779)
|++|+|++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666665555554443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.0022 Score=63.62 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred ccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcc
Q 004022 190 VTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKR 226 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~ 226 (779)
|+.|+|..|.|..+.+ .+.++++|+.|.|..|.-.+.
T Consensus 65 LkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 65 LKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3333333344444433 345666666666666654443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.62 E-value=0.21 Score=44.92 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=40.6
Q ss_pred cccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-C
Q 004022 201 EEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-F 278 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l 278 (779)
..++. .+..+++|+.+.+..+ ....-...+.++++|+.+.+.. .....-...+..+++|+.+.+..+ +..++.. +
T Consensus 24 ~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 24 KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp -EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence 44443 4555667777777653 2332233466666777777754 222223345566777777777654 5555443 5
Q ss_pred CCCCCCCEEeccC
Q 004022 279 ENLPGLEVLFVED 291 (779)
Q Consensus 279 ~~l~~L~~L~L~~ 291 (779)
.+. +|+.+.+..
T Consensus 101 ~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 101 SNC-NLKEINIPS 112 (129)
T ss_dssp TT--T--EEE-TT
T ss_pred cCC-CceEEEECC
Confidence 555 777776654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.61 E-value=0.072 Score=31.49 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=8.5
Q ss_pred ccEEEecCcCCcccCcccC
Q 004022 190 VTRLYLGQSAIEEVPSSIE 208 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~ 208 (779)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 3444444444455554443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.29 E-value=0.083 Score=29.02 Aligned_cols=16 Identities=50% Similarity=0.673 Sum_probs=6.1
Q ss_pred CccEEEEecCCCccCC
Q 004022 378 SLEILYLSGNNFESLP 393 (779)
Q Consensus 378 ~L~~L~Ls~n~l~~lp 393 (779)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.63 E-value=0.1 Score=28.69 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=7.5
Q ss_pred CceEEEccCCCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLP 107 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp 107 (779)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.57 E-value=0.0055 Score=59.24 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=74.0
Q ss_pred cChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcE
Q 004022 39 LDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVE 117 (779)
Q Consensus 39 l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~ 117 (779)
++-..+....+.+.||++.|++ +.+-..+..+ ..|..|+++.|.+..+|.++ ..+.++.
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~-------------------vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~ 92 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRL-------------------VNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVN 92 (326)
T ss_pred cchhhhhccceeeeehhhhhHH-------------------HhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHH
Confidence 4455677788889999988876 3444555555 58888999999999999998 7888899
Q ss_pred EECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 118 LNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 118 L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
+++..|+.++ .|.+++.+++++++++.++.+..
T Consensus 93 ~~~~~n~~~~--------~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 93 AASHKNNHSQ--------QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHhhccchhh--------CCccccccCCcchhhhccCcchH
Confidence 9999998888 78889999999999998887543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.41 E-value=0.019 Score=64.02 Aligned_cols=188 Identities=20% Similarity=0.148 Sum_probs=97.7
Q ss_pred CccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcccc----hhhhcC-ccCcEeecCCcCCCc-----CCcc
Q 004022 212 DLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEHFP----EILEKM-EHLKRIYSDRTPITE-----LPSS 277 (779)
Q Consensus 212 ~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~~p----~~l~~l-~~L~~L~L~~n~i~~-----lp~~ 277 (779)
.+..|.+.+|.+... +...+.....|+.|++++|.+...-- +.+... ..|++|++..+.++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 366777777765433 22334556777777777766552211 112221 345555555555542 2333
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh---hhccCCC
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR---TFLLGLS 354 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~ 354 (779)
+.....++.++++.|.+...- .+.. ...++..+....++++|++++|.++..... ..+...+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g--------~~~l-------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELG--------LLVL-------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred HhcccchhHHHHHhcccchhh--------hHHH-------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 444556666666665443100 0000 001111233456677777777776533111 1123333
Q ss_pred C-CcEEEecCCCCcc-----CCcccCCC-CCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCCC
Q 004022 355 A-MGLLHISDYAVRE-----IPQEIAYL-SSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 355 ~-L~~L~Ls~~~l~~-----~p~~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
. +..|++..|.+.+ +...+..+ ..++.++++.|.++ .+...+..+++++.+.+++|++..
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4 5557777776664 22334444 56777777777776 344556667777777777776643
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.20 E-value=0.73 Score=28.33 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=14.6
Q ss_pred CCCccEEEEecCCCccCChh
Q 004022 376 LSSLEILYLSGNNFESLPAI 395 (779)
Q Consensus 376 l~~L~~L~Ls~n~l~~lp~~ 395 (779)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888877754
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.20 E-value=0.73 Score=28.33 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=14.6
Q ss_pred CCCccEEEEecCCCccCChh
Q 004022 376 LSSLEILYLSGNNFESLPAI 395 (779)
Q Consensus 376 l~~L~~L~Ls~n~l~~lp~~ 395 (779)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888877754
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.78 E-value=0.043 Score=53.30 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=72.1
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.||++.++...+. ..|+.++.|..|+++.|.+ ..+|+++..+ ..++.++++.|..+..|
T Consensus 46 vld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~-------------------~~~~~d~~q~-~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 46 VLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQI-------------------KFLPKDAKQQ-RETVNAASHKNNHSQQP 104 (326)
T ss_pred eehhhhhHHHhhc-cchHHHHHHHHHhccHhhH-------------------hhChhhHHHH-HHHHHHHhhccchhhCC
Confidence 4778888766665 4688999999999999988 4788888888 69999999999999999
Q ss_pred CCC-CCCCCcEEECCCCCCCCccCCC
Q 004022 108 SNF-KPKNLVELNLRCSKVEQPWEGE 132 (779)
Q Consensus 108 ~~~-~l~~L~~L~L~~n~i~~l~~g~ 132 (779)
.++ ..++++++++..|.+..-|.|.
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~~~~~~~ 130 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFFRKLFGF 130 (326)
T ss_pred ccccccCCcchhhhccCcchHHHHhH
Confidence 999 8999999999999988777665
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=80.57 E-value=0.015 Score=64.75 Aligned_cols=170 Identities=26% Similarity=0.307 Sum_probs=100.6
Q ss_pred ccCcccCCCCCccEEeeeCCCCCcc----cccccCCC-CCCcEEecccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 202 EVPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKL-RSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l-~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+...+.....|..|++++|.+... +-..+... ..|++|.+..|..... +.+.+.....++.++++.|.+.
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 4445566677788888888775421 11122222 5667777777776543 4556666788888888888875
Q ss_pred c-----CCccCC----CCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc-cCeeeccCCCCC
Q 004022 273 E-----LPSSFE----NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM-LRSLDSSHCKGL 342 (779)
Q Consensus 273 ~-----lp~~l~----~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~-L~~L~l~~n~~~ 342 (779)
. ++..+. ...++++|.+.+|..... .+. .+...+...+. +..|++..|.+.
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~------~c~-------------~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVTSS------SCA-------------LLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH------HHH-------------HHHHHHhccchhhHHHHHHhcCcc
Confidence 1 222233 466777787777765421 011 11111222333 555677766655
Q ss_pred CccCh---hhccCC-CCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc
Q 004022 343 ESFPR---TFLLGL-SAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 343 ~~~~~---~~~~~l-~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
..... ..+..+ ..++.++++.|.+++ +...+..++.+++|.++.|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 43111 112333 567888888888776 4455667778999999998776
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.62 E-value=1.4 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=15.4
Q ss_pred CccCcEeecCCcCCCcCCcc
Q 004022 258 MEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~lp~~ 277 (779)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.62 E-value=1.4 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=15.4
Q ss_pred CccCcEeecCCcCCCcCCcc
Q 004022 258 MEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~lp~~ 277 (779)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.17 E-value=1.5 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=12.5
Q ss_pred CCceEEEccCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~ 108 (779)
.+|++|+.++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 466777777777777765
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.58 E-value=2.1 Score=26.45 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=16.0
Q ss_pred ccCCceEeeccCcccccccC
Q 004022 47 MSNLRLFKFYVPKFYEIEKL 66 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l 66 (779)
+++|+.|++++|.|+.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CCccCEEECCCCccceecCc
Confidence 46899999999999755544
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=0.66 Score=44.53 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=44.9
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc---CCcccCCCCCccEEEEecC-CCccCC-hhccCCCCCCE
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE---IPQEIAYLSSLEILYLSGN-NFESLP-AIIKQMSQLRF 404 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~---~p~~l~~l~~L~~L~Ls~n-~l~~lp-~~l~~l~~L~~ 404 (779)
.++.++.+++.+...--.. +..++.++.|.+.+|.-.+ +..--+..++|+.|+|++| +||+-- .++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3566666666554432111 4566667777777774322 1111124567888888877 455332 55677777777
Q ss_pred EEcCCC
Q 004022 405 IHLEDF 410 (779)
Q Consensus 405 L~Ls~n 410 (779)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666553
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.43 E-value=1.1 Score=43.12 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=15.3
Q ss_pred cccCeeeccCCCCCCccChhhccCCCCCcEEEec
Q 004022 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHIS 362 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls 362 (779)
++|+.|++++|.-.+...-..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 4455555555554444333333344444444433
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.48 E-value=5.4 Score=23.82 Aligned_cols=11 Identities=36% Similarity=0.142 Sum_probs=3.8
Q ss_pred CCcEEeccccc
Q 004022 236 SLVTLILLGCL 246 (779)
Q Consensus 236 ~L~~L~L~~~~ 246 (779)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.09 E-value=23 Score=22.17 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=9.7
Q ss_pred CCCcEEECCCCCCCC
Q 004022 113 KNLVELNLRCSKVEQ 127 (779)
Q Consensus 113 ~~L~~L~L~~n~i~~ 127 (779)
++|++|+|++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777776653
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.13 E-value=16 Score=40.79 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=33.0
Q ss_pred CCCCCcEEEecCCCCccC---CcccCCCCCccEEEEecC--CCccCChhcc--CCCCCCEEEcCCCCCCCcC
Q 004022 352 GLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGN--NFESLPAIIK--QMSQLRFIHLEDFNMLQSL 416 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~---p~~l~~l~~L~~L~Ls~n--~l~~lp~~l~--~l~~L~~L~Ls~n~~~~~~ 416 (779)
..+.+..+.|++|++..+ ..-....|+|+.|+|++| .+...++ +. ....|++|.+.+|++.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccccch
Confidence 445555566666655442 222234567777777776 3332221 11 2334666777777665543
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.47 E-value=19 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=7.1
Q ss_pred CCccEEeeecCcCC
Q 004022 463 LCLQYLNLEDCNML 476 (779)
Q Consensus 463 ~~L~~L~l~~c~~L 476 (779)
++|++|++++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34555555555444
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.10 E-value=18 Score=40.40 Aligned_cols=66 Identities=14% Similarity=-0.046 Sum_probs=29.6
Q ss_pred CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC-CCCCCC--CCCCCCcEEEecCCcCcc
Q 004022 111 KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL-RSFPSN--LHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 111 ~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l-~~~p~~--~~l~~L~~L~L~~~~~l~ 181 (779)
+.+.+..++|++|++.++- + +..--...++|+.|+|++|... ...+.+ .+...|++|-+.||+..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld-~----~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD-A----LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchh-h----hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3345555555555554430 0 1111223456666666666211 111111 123456666666666554
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.40 E-value=2.5e+02 Score=31.18 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCceEEEccCCCCC-CCC----CCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLR-TLP----SNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH 165 (779)
Q Consensus 91 ~~L~~L~l~~n~l~-~lp----~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~ 165 (779)
..+++++++.|++. ..| .....-+|++-.++.-.|..+ +.. ..=..+.+++|+.|..-+.+|...+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l--------~~q-sg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKL--------LIQ-SGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHh--------hhh-hccccccccccccCCCCccchhHHH
Confidence 37788999999874 333 332332233333333222221 100 0123577888888887777776433
Q ss_pred ----CCCCcEEEecCC
Q 004022 166 ----FVCPVTINFSYC 177 (779)
Q Consensus 166 ----l~~L~~L~L~~~ 177 (779)
-.-++.++.++-
T Consensus 236 ~~a~~~vl~~ld~s~t 251 (553)
T KOG4242|consen 236 KKAGTLVLFKLDRSTT 251 (553)
T ss_pred Hhhhhhhhhccccccc
Confidence 234566666554
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.62 E-value=2.9e+02 Score=30.73 Aligned_cols=147 Identities=14% Similarity=0.010 Sum_probs=82.5
Q ss_pred CCceEEEccCCCCC-----CCCCCC---CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC---
Q 004022 91 KKLRYLHWDTYPLR-----TLPSNF---KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS--- 159 (779)
Q Consensus 91 ~~L~~L~l~~n~l~-----~lp~~~---~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~--- 159 (779)
..++.+++.-|.+. .+-..+ .-..+++++++.|.+..- +.. .++..... +.++.|+....
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dk--vpi-hl~~p~~p------l~lr~c~lsskfis 205 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDK--VPI-HLPQPGNP------LSLRVCELSSKFIS 205 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCccccc--CCc-cccCCCCc------cchhhhhhhhhHHH
Confidence 35666676666542 222222 345689999999988753 110 02222211 66777764432
Q ss_pred -CCCCCCCCCCcEEEecCCcCccccCCcCC------CccEEEecCcCCc--ccCc--ccCCCCCccEEeeeCCCCCc---
Q 004022 160 -FPSNLHFVCPVTINFSYCVNLIEFPQISG------KVTRLYLGQSAIE--EVPS--SIECLTDLEVLDLRGCKRLK--- 225 (779)
Q Consensus 160 -~p~~~~l~~L~~L~L~~~~~l~~~~~~~~------~L~~L~L~~n~i~--~lp~--~l~~l~~L~~L~L~~~~~~~--- 225 (779)
++.-.+-..+.+++++.|..-..+|.... -++.++.+.+.+. .+-. ..+.-++|...+++.|....
T Consensus 206 ~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg 285 (553)
T KOG4242|consen 206 KLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKG 285 (553)
T ss_pred HhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccc
Confidence 22223345788999999988877775542 3667777776662 2222 33556778888877664321
Q ss_pred -cccc----ccCCCCCCcEEecccccC
Q 004022 226 -RIST----SFCKLRSLVTLILLGCLN 247 (779)
Q Consensus 226 -~lp~----~l~~l~~L~~L~L~~~~~ 247 (779)
..+. .+..-.++ +|++.++..
T Consensus 286 ~Egg~~~k~~fS~~~sg-hln~~~~~~ 311 (553)
T KOG4242|consen 286 EEGGGAEKDTFSPDPSG-HLNSRPRYT 311 (553)
T ss_pred cccccccccccCcCccc-ccccccccC
Confidence 1221 23333455 666666543
No 95
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.25 E-value=1.5e+02 Score=20.78 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCCceEEEccCCCCCCCCCCCCCCCCcEEECC
Q 004022 89 LPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLR 121 (779)
Q Consensus 89 l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~ 121 (779)
+|.++++|.+.++--..+....-+.+|++|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 346777777744333334333334556666554
Done!