Query 004022
Match_columns 779
No_of_seqs 885 out of 4512
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-43 5.1E-48 422.4 26.9 455 91-555 200-759 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-42 6.7E-47 412.8 27.0 437 92-545 179-715 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.6E-39 5.6E-44 378.4 30.5 418 27-494 36-510 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-38 9.5E-43 373.1 39.6 477 28-515 29-619 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-39 7E-44 377.5 29.4 452 28-515 36-555 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.7E-38 2.6E-42 364.3 29.4 435 28-495 61-558 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-37 1.5E-41 370.5 33.9 456 29-523 29-564 (844)
8 4eco_A Uncharacterized protein 100.0 5.5E-38 1.9E-42 366.0 20.0 388 48-476 81-600 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.9E-41 354.4 28.3 472 28-546 15-557 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-35 6E-40 349.1 38.6 498 28-548 8-597 (680)
11 4ecn_A Leucine-rich repeat pro 100.0 8.4E-37 2.9E-41 362.0 24.7 307 101-432 435-787 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-35 1.3E-39 353.6 36.0 470 26-543 6-556 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-36 1.8E-40 344.5 23.8 448 30-527 32-518 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9.3E-36 3.2E-40 342.5 22.9 460 29-546 10-509 (549)
15 4eco_A Uncharacterized protein 100.0 2.7E-35 9.2E-40 343.2 23.1 375 91-495 81-598 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 1.7E-34 5.7E-39 333.6 28.0 439 28-501 32-535 (570)
17 2z63_A TOLL-like receptor 4, v 100.0 1.4E-34 4.9E-39 334.1 27.1 460 28-528 11-540 (570)
18 1jl5_A Outer protein YOPM; leu 100.0 4.3E-34 1.5E-38 318.8 26.9 382 91-515 11-406 (454)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-34 1.4E-38 326.4 25.6 408 29-494 26-478 (520)
20 1jl5_A Outer protein YOPM; leu 100.0 1.9E-33 6.5E-38 313.6 24.4 406 40-515 4-426 (454)
21 4ecn_A Leucine-rich repeat pro 100.0 5.2E-33 1.8E-37 329.5 23.9 325 183-515 440-837 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-33 7.2E-38 320.5 14.6 404 81-503 14-462 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-31 6.5E-36 307.1 23.8 363 92-472 77-482 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.4E-30 4.9E-35 291.9 24.7 325 83-416 47-411 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-31 2.4E-35 302.3 22.5 376 29-456 57-511 (562)
26 1o6v_A Internalin A; bacterial 100.0 4.6E-30 1.6E-34 288.4 26.8 297 92-434 91-388 (466)
27 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-30 7.7E-35 288.9 20.5 310 40-414 34-353 (457)
28 1o6v_A Internalin A; bacterial 100.0 1.2E-29 3.9E-34 285.2 25.8 341 45-456 43-389 (466)
29 4g8a_A TOLL-like receptor 4; l 100.0 6.7E-30 2.3E-34 298.7 24.8 432 28-495 56-578 (635)
30 3v47_A TOLL-like receptor 5B a 100.0 6.7E-30 2.3E-34 286.4 21.3 351 89-460 28-413 (455)
31 4fmz_A Internalin; leucine ric 100.0 6.2E-29 2.1E-33 268.1 27.4 304 43-412 39-345 (347)
32 2id5_A Lingo-1, leucine rich r 100.0 1.2E-28 4.2E-33 277.9 25.0 298 81-433 25-332 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 3.4E-28 1.2E-32 266.8 26.4 286 46-415 43-333 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 5E-28 1.7E-32 269.9 26.5 337 29-438 47-391 (457)
35 4fmz_A Internalin; leucine ric 100.0 1.1E-27 3.8E-32 258.3 26.6 301 23-390 45-346 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 3.4E-28 1.2E-32 274.2 23.0 309 93-455 13-333 (477)
37 3oja_B Anopheles plasmodium-re 100.0 1.2E-27 4.3E-32 276.9 26.3 303 46-432 49-356 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 4.9E-27 1.7E-31 257.5 28.7 297 29-413 50-352 (390)
39 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-27 2.6E-31 272.9 27.6 394 28-455 80-580 (635)
40 3oja_B Anopheles plasmodium-re 100.0 1.6E-26 5.5E-31 267.6 28.9 300 29-414 56-359 (597)
41 1xku_A Decorin; proteoglycan, 99.9 8.1E-26 2.8E-30 241.9 27.3 266 91-413 31-306 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 5.4E-26 1.9E-30 243.4 23.9 265 91-413 33-307 (332)
43 1xku_A Decorin; proteoglycan, 99.9 3.2E-24 1.1E-28 229.4 28.2 285 47-411 30-330 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-25 1.3E-29 236.8 20.5 283 48-411 33-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-25 3.9E-30 238.5 12.3 184 203-413 117-304 (313)
46 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-23 1.1E-27 238.0 28.9 263 91-418 40-302 (622)
47 1ogq_A PGIP-2, polygalacturona 99.9 9.4E-26 3.2E-30 239.2 6.8 242 167-433 50-303 (313)
48 2z80_A TOLL-like receptor 2, v 99.9 1.5E-24 5.1E-29 234.3 16.3 253 91-417 52-318 (353)
49 4fcg_A Uncharacterized protein 99.9 8E-24 2.7E-28 225.8 18.8 217 47-292 80-311 (328)
50 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-27 7.9E-32 266.2 -10.7 350 28-414 7-412 (461)
51 4fcg_A Uncharacterized protein 99.9 1.8E-23 6.2E-28 223.0 18.7 156 91-299 81-246 (328)
52 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-22 1.2E-26 229.4 29.9 270 45-399 37-307 (622)
53 3zyi_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 223.1 25.3 244 91-412 54-302 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 3.4E-22 1.2E-26 222.5 25.0 244 91-412 43-291 (440)
55 2z66_A Variable lymphocyte rec 99.9 7.8E-23 2.7E-27 216.2 18.6 244 94-390 10-261 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-22 4.5E-27 212.1 17.1 222 94-367 14-238 (285)
57 1z7x_W Ribonuclease inhibitor; 99.9 7.4E-26 2.5E-30 253.9 -8.4 362 90-475 2-439 (461)
58 3o53_A Protein LRIM1, AGAP0063 99.9 5.5E-24 1.9E-28 226.2 4.3 257 93-411 12-273 (317)
59 2z66_A Variable lymphocyte rec 99.9 5.3E-22 1.8E-26 209.7 18.8 225 92-344 29-263 (306)
60 3zyi_A Leucine-rich repeat-con 99.9 2.8E-21 9.5E-26 215.9 24.5 236 29-295 59-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 3.1E-21 1.1E-25 214.8 23.2 237 29-295 48-292 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-21 6E-26 203.5 20.0 207 81-297 25-240 (285)
63 1wwl_A Monocyte differentiatio 99.9 2E-23 6.8E-28 221.3 4.3 248 91-414 43-310 (312)
64 2z80_A TOLL-like receptor 2, v 99.9 9.4E-22 3.2E-26 212.3 17.0 224 189-413 53-290 (353)
65 3ogk_B Coronatine-insensitive 99.9 3.4E-24 1.2E-28 248.3 -3.8 366 43-413 107-526 (592)
66 3oja_A Leucine-rich immune mol 99.9 5.9E-22 2E-26 222.8 11.0 233 114-408 35-270 (487)
67 3ogk_B Coronatine-insensitive 99.9 6.9E-24 2.4E-28 245.8 -6.2 375 88-495 71-524 (592)
68 1wwl_A Monocyte differentiatio 99.8 1.8E-22 6.3E-27 213.8 3.5 245 42-390 37-309 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-21 4.8E-26 207.5 10.1 253 30-318 16-275 (317)
70 3oja_A Leucine-rich immune mol 99.8 2.3E-21 7.9E-26 218.0 7.7 190 91-295 34-227 (487)
71 2z62_A TOLL-like receptor 4, v 99.8 3.7E-19 1.3E-23 184.9 21.0 206 189-417 29-241 (276)
72 2z62_A TOLL-like receptor 4, v 99.8 4.8E-19 1.6E-23 184.0 20.3 183 80-293 20-211 (276)
73 1p9a_G Platelet glycoprotein I 99.8 7.5E-19 2.6E-23 183.6 20.5 198 87-295 7-208 (290)
74 1p9a_G Platelet glycoprotein I 99.8 9.3E-19 3.2E-23 183.0 21.2 197 189-413 11-208 (290)
75 3rfs_A Internalin B, repeat mo 99.8 2.2E-19 7.4E-24 186.2 16.2 200 92-328 42-245 (272)
76 2o6q_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 178.7 22.0 198 190-413 18-218 (270)
77 2o6q_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 178.1 22.4 199 49-297 17-220 (270)
78 2p1m_B Transport inhibitor res 99.8 1.5E-22 5.2E-27 234.6 -10.7 374 91-496 66-518 (594)
79 2xwt_C Thyrotropin receptor; s 99.8 9.6E-19 3.3E-23 177.6 16.0 203 180-409 23-235 (239)
80 4glp_A Monocyte differentiatio 99.8 9.3E-19 3.2E-23 185.1 15.3 158 209-414 143-308 (310)
81 4ay9_X Follicle-stimulating ho 99.8 2.6E-18 9E-23 184.9 18.6 178 94-299 12-194 (350)
82 3rfs_A Internalin B, repeat mo 99.8 6E-18 2E-22 175.3 20.6 222 50-307 21-247 (272)
83 1h6u_A Internalin H; cell adhe 99.8 2.6E-18 9E-23 181.3 17.0 195 43-295 36-230 (308)
84 1h6u_A Internalin H; cell adhe 99.8 6.4E-18 2.2E-22 178.3 18.0 195 91-324 41-235 (308)
85 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.9E-26 227.2 -12.0 365 42-433 99-518 (594)
86 2ast_B S-phase kinase-associat 99.8 3.7E-19 1.3E-23 190.5 6.6 232 144-420 70-313 (336)
87 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5E-22 168.8 16.9 194 49-293 32-237 (239)
88 3m19_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 166.1 20.0 177 92-297 15-194 (251)
89 2ca6_A RAN GTPase-activating p 99.7 4.2E-19 1.4E-23 194.0 3.2 241 40-298 24-319 (386)
90 4glp_A Monocyte differentiatio 99.7 7.2E-18 2.5E-22 178.3 12.6 199 210-431 90-304 (310)
91 4ay9_X Follicle-stimulating ho 99.7 3.3E-17 1.1E-21 176.3 17.6 223 171-441 13-243 (350)
92 2ca6_A RAN GTPase-activating p 99.7 2.1E-19 7.3E-24 196.4 -1.0 191 207-416 90-319 (386)
93 3m19_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 162.7 19.4 176 190-415 16-194 (251)
94 3goz_A Leucine-rich repeat-con 99.7 4.9E-19 1.7E-23 191.6 0.7 63 353-415 224-299 (362)
95 3cvr_A Invasion plasmid antige 99.7 3.3E-17 1.1E-21 185.8 15.5 184 92-302 60-250 (571)
96 2ast_B S-phase kinase-associat 99.7 1.4E-18 4.7E-23 186.0 2.6 200 188-410 70-282 (336)
97 3goz_A Leucine-rich repeat-con 99.7 1.3E-18 4.4E-23 188.3 0.7 201 86-293 17-264 (362)
98 3cvr_A Invasion plasmid antige 99.7 4.2E-16 1.5E-20 176.7 20.1 192 42-280 48-252 (571)
99 1h6t_A Internalin B; cell adhe 99.7 5.3E-16 1.8E-20 162.1 15.3 169 91-296 46-214 (291)
100 2o6s_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 152.2 15.3 173 94-301 10-184 (208)
101 1h6t_A Internalin B; cell adhe 99.6 7E-16 2.4E-20 161.2 14.2 177 43-276 41-217 (291)
102 4ezg_A Putative uncharacterize 99.6 8.6E-16 2.9E-20 150.7 13.0 90 203-294 104-193 (197)
103 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 146.6 16.2 165 81-283 21-190 (208)
104 1m9s_A Internalin B; cell inva 99.6 3.4E-15 1.1E-19 171.2 16.7 169 91-296 43-211 (605)
105 1m9s_A Internalin B; cell inva 99.6 2.6E-15 8.9E-20 172.1 15.5 177 43-276 38-214 (605)
106 2v9t_B SLIT homolog 2 protein 99.6 1.8E-14 6.3E-19 143.8 15.4 151 94-295 14-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 1.7E-14 5.8E-19 144.0 14.9 153 93-296 13-167 (220)
108 4ezg_A Putative uncharacterize 99.6 1.2E-14 4E-19 142.6 13.0 151 91-273 44-195 (197)
109 2xot_A Amphoterin-induced prot 99.6 1E-14 3.6E-19 157.4 13.6 174 93-295 20-202 (361)
110 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.8E-19 156.4 14.6 172 191-412 21-201 (361)
111 3e6j_A Variable lymphocyte rec 99.6 4.7E-14 1.6E-18 141.7 15.7 63 352-414 110-173 (229)
112 3e6j_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 140.3 16.7 150 92-295 20-172 (229)
113 1xeu_A Internalin C; cellular 99.5 6.4E-15 2.2E-19 151.4 8.9 165 92-272 20-185 (263)
114 1xeu_A Internalin C; cellular 99.5 1.3E-14 4.4E-19 149.1 11.2 144 92-250 42-187 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 5.6E-14 1.9E-18 140.2 15.2 113 206-318 52-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.4E-18 138.4 16.0 116 201-316 45-163 (220)
117 1dce_A Protein (RAB geranylger 99.5 2E-16 7E-21 180.2 -5.1 196 188-427 349-566 (567)
118 1dce_A Protein (RAB geranylger 99.5 8.8E-16 3E-20 175.0 -2.9 210 208-449 346-567 (567)
119 4b8c_D Glucose-repressible alc 99.4 4.9E-14 1.7E-18 165.6 7.4 137 195-339 231-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 128.1 11.8 74 204-277 88-165 (168)
121 4b8c_D Glucose-repressible alc 99.4 3.3E-14 1.1E-18 167.1 4.2 161 195-387 208-369 (727)
122 3sb4_A Hypothetical leucine ri 99.4 1.8E-12 6.1E-17 137.9 14.9 237 43-289 43-328 (329)
123 2ell_A Acidic leucine-rich nuc 99.4 1.2E-12 4.1E-17 124.6 11.1 135 235-393 24-163 (168)
124 1w8a_A SLIT protein; signaling 99.4 4.8E-12 1.7E-16 123.2 14.7 130 93-250 10-141 (192)
125 1w8a_A SLIT protein; signaling 99.3 5.4E-12 1.8E-16 122.9 13.3 91 207-297 50-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 120.5 8.9 35 92-126 18-55 (149)
127 2wfh_A SLIT homolog 2 protein 99.3 7.9E-12 2.7E-16 121.7 13.1 109 188-296 31-140 (193)
128 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 119.7 14.5 124 94-247 13-138 (193)
129 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.7E-17 119.3 8.6 85 206-290 59-148 (149)
130 1a9n_A U2A', U2A'; complex (nu 99.3 5.7E-12 2E-16 120.8 9.3 87 206-293 59-151 (176)
131 2o6r_A Variable lymphocyte rec 99.2 6.6E-11 2.3E-15 113.5 14.5 131 92-251 8-140 (177)
132 2o6r_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 113.7 13.2 109 188-296 28-138 (177)
133 3sb4_A Hypothetical leucine ri 99.2 6.3E-11 2.2E-15 125.9 14.6 79 325-406 246-327 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.2 8.3E-12 2.8E-16 119.7 7.0 56 91-155 19-75 (176)
135 4fdw_A Leucine rich hypothetic 99.1 2.6E-09 9E-14 116.1 22.2 237 92-390 136-383 (401)
136 1ds9_A Outer arm dynein; leuci 99.1 2.1E-13 7.1E-18 133.7 -9.3 91 43-155 13-104 (198)
137 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.6E-17 128.7 -6.3 125 254-406 43-180 (198)
138 2r9u_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 107.7 11.2 104 191-296 15-119 (174)
139 3g39_A Variable lymphocyte rec 99.1 4.3E-10 1.5E-14 106.9 11.4 105 190-296 11-116 (170)
140 4fdw_A Leucine rich hypothetic 99.1 7.7E-09 2.6E-13 112.4 21.0 222 36-296 124-359 (401)
141 4fs7_A Uncharacterized protein 99.0 9.4E-09 3.2E-13 112.0 19.1 308 36-409 59-375 (394)
142 3g39_A Variable lymphocyte rec 99.0 2.6E-09 8.9E-14 101.5 12.6 104 92-224 10-115 (170)
143 2r9u_A Variable lymphocyte rec 99.0 2.8E-09 9.6E-14 101.6 12.2 102 93-224 14-118 (174)
144 4fs7_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 104.4 19.3 305 81-431 61-376 (394)
145 2ifg_A High affinity nerve gro 98.8 1.7E-08 5.9E-13 107.8 11.3 104 192-296 12-117 (347)
146 3un9_A NLR family member X1; l 98.7 8.3E-10 2.8E-14 118.9 -1.5 160 91-272 72-252 (372)
147 3un9_A NLR family member X1; l 98.7 1.1E-09 3.8E-14 117.9 -3.0 63 351-413 180-252 (372)
148 4gt6_A Cell surface protein; l 98.6 2E-06 7E-11 93.3 22.3 152 36-219 51-213 (394)
149 2ifg_A High affinity nerve gro 98.5 2.4E-07 8.2E-12 98.9 11.0 72 201-273 45-117 (347)
150 2ra8_A Uncharacterized protein 98.5 3.8E-08 1.3E-12 105.1 3.9 105 11-126 96-206 (362)
151 4gt6_A Cell surface protein; l 98.5 8.9E-06 3E-10 88.3 20.9 287 81-411 53-368 (394)
152 2ra8_A Uncharacterized protein 98.4 2.5E-07 8.6E-12 98.7 6.7 137 136-294 164-319 (362)
153 4h09_A Hypothetical leucine ri 98.2 7.1E-05 2.4E-09 80.6 20.7 268 37-363 58-342 (379)
154 4h09_A Hypothetical leucine ri 98.0 0.00012 4.1E-09 78.8 18.2 79 327-408 238-318 (379)
155 1io0_A Tropomodulin; LRR prote 97.7 1.4E-05 4.9E-10 76.5 2.6 92 203-294 57-163 (185)
156 1io0_A Tropomodulin; LRR prote 97.6 9.8E-06 3.3E-10 77.7 0.5 63 210-272 92-164 (185)
157 3e4g_A ATP synthase subunit S, 97.6 3.2E-05 1.1E-09 72.5 3.4 45 105-156 52-97 (176)
158 3e4g_A ATP synthase subunit S, 97.5 9E-05 3.1E-09 69.4 5.6 95 202-296 52-153 (176)
159 3rw6_A Nuclear RNA export fact 97.3 0.00012 3.9E-09 74.0 4.0 65 352-417 168-237 (267)
160 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.4E-09 71.6 5.3 59 189-249 171-234 (267)
161 3rfe_A Platelet glycoprotein I 95.8 0.012 4E-07 52.3 5.8 54 357-412 11-67 (130)
162 3rfe_A Platelet glycoprotein I 95.7 0.019 6.7E-07 50.8 7.0 54 95-156 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.3 0.017 5.9E-07 54.9 2.4 90 203-292 62-167 (197)
164 1pgv_A TMD-1, tropomodulin TMD 93.6 0.027 9.2E-07 53.6 2.2 83 327-409 39-135 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-43 Score=422.38 Aligned_cols=455 Identities=18% Similarity=0.200 Sum_probs=316.9
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
.+|++|++++|.+...+..+ .+++|++|+|++|.++.. +|.+++++++|++|++++|.+.+.+|.. .+++|
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-------FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-------HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-------ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCC
Confidence 47777777777776533335 677777777777777643 6777778888888888888766666655 77788
Q ss_pred cEEEecCCcCccccCCcC----CCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccc-cCCCCCCcEEecc
Q 004022 170 VTINFSYCVNLIEFPQIS----GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILL 243 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~----~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~ 243 (779)
++|++++|...+.+|..+ .+|+.|++++|.+. .+|..++++++|++|++++|.+.+.+|.. +..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 888888887766666554 56788888888875 66777888888888888888777677765 7778888888888
Q ss_pred cccCCcccchhhhcCc-cCcEeecCCcCCC-cCCccCCC--CCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC
Q 004022 244 GCLNLEHFPEILEKME-HLKRIYSDRTPIT-ELPSSFEN--LPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
+|.+.+.+|..+..++ +|++|++++|.++ .+|..+.. +++|+.|++++|.+.+.+|..+..+++|+. .+.+|...
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 8877777777777776 7777777777766 44555544 667777777777777777777777777777 55555555
Q ss_pred CcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 319 SQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 319 ~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
+.+|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+++ +|..+..+++|++|+|++|+++ .+|.++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 567777777777777777777777666554 4567777777777777775 6777777777777777777777 667777
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC----------------------------------
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV---------------------------------- 439 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~---------------------------------- 439 (779)
+.+++|+.|++++|++.+.+|.. .++|+.|++++|+....+|.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 77777777777777777777653 36677777777754333321
Q ss_pred -------------------------------------C--CCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCc
Q 004022 440 -------------------------------------L--PFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLR 477 (779)
Q Consensus 440 -------------------------------------l--~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~ 477 (779)
+ ..+|+.|++++|++.+.+|.. +++|+.|++++|.-..
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 0 026889999999999999864 4789999999988777
Q ss_pred ccCCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCCCc---ccccc-cccc--cceeeccccc
Q 004022 478 SLPEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPDLQ---WAPES-LKSA--AICFEFTNCL 545 (779)
Q Consensus 478 ~l~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~l~---~lp~~-l~~~--l~~l~~~~C~ 545 (779)
.+|.. +++|+.|++++|.-...+|..+ ..|+.|++++| ++++..|... .++.. +..+ +--.-+..|.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence 88853 5789999999977666888765 46778888887 5666666542 22211 1111 0001123677
Q ss_pred ccCcccchhh
Q 004022 546 KLNGKANNKI 555 (779)
Q Consensus 546 ~l~~~~~~~i 555 (779)
.-..+.|.+|
T Consensus 750 ~~~~~~~~~~ 759 (768)
T 3rgz_A 750 PSNADGYAHH 759 (768)
T ss_dssp SCC-------
T ss_pred CCccCCCCCC
Confidence 7666777655
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-42 Score=412.77 Aligned_cols=437 Identities=21% Similarity=0.214 Sum_probs=325.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+|++|++++|.+........+++|++|+|++|.++.. +|. ++++++|++|++++|.+.+.+|. +.++++|+
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-------IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-------CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-------Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 5555555555544333334566666666666666542 343 66777777777777776555554 55577777
Q ss_pred EEEecCCcCccccCC-cCCCccEEEecCcCCc-ccCcccCCC-CCccEEeeeCCCCCcccccccCCCCCCcEEecccccC
Q 004022 171 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIE-EVPSSIECL-TDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN 247 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~-~~~~L~~L~L~~n~i~-~lp~~l~~l-~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 247 (779)
+|++++|.....+|. .+.+|++|++++|.+. .+|..++.+ ++|++|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus 251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 777777766554443 3457778888888776 777777664 8888888888887777888888888888888888887
Q ss_pred Ccccchh-hhcCccCcEeecCCcCCC-cCCccCCCCC-CCCEEeccCCCCCCCCCCCCCC--chhHHH-HHhhcccCCcC
Q 004022 248 LEHFPEI-LEKMEHLKRIYSDRTPIT-ELPSSFENLP-GLEVLFVEDCSKLDNLPDNIGS--LEYLYY-ILAAASAISQL 321 (779)
Q Consensus 248 ~~~~p~~-l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~--l~~L~~-~~~~~~~~~~l 321 (779)
.+.+|.. +..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+.. +++|+. .+.+|...+.+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 7777765 788888888888888887 7777777776 8888888888887777777766 677777 56666666688
Q ss_pred CccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCC
Q 004022 322 PSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQM 399 (779)
Q Consensus 322 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 399 (779)
|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.. +|..+..+++|++|++++|+++ .+|..+..+
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 888999999999999999988777665 6788999999999999885 8888999999999999999998 788889999
Q ss_pred CCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC-----------
Q 004022 400 SQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL----------- 461 (779)
Q Consensus 400 ~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~----------- 461 (779)
++|++|++++|++.+.+|.. +++|++|++++|+....+|. ++ +|+.|++++|++.+.+|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 99999999999999888874 47899999999987666663 33 8999999999887766631
Q ss_pred --------------------------------------------------------------CCCccEEeeecCcCCccc
Q 004022 462 --------------------------------------------------------------PLCLQYLNLEDCNMLRSL 479 (779)
Q Consensus 462 --------------------------------------------------------------~~~L~~L~l~~c~~L~~l 479 (779)
+++|+.|++++|.-...+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 245788888888766677
Q ss_pred CCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCCCccccccccc--ccceeeccccc
Q 004022 480 PEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPDLQWAPESLKS--AAICFEFTNCL 545 (779)
Q Consensus 480 ~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~--~l~~l~~~~C~ 545 (779)
|.. +++|+.|++++|.-...+|..+ .+|+.|++++| ++++ .+|+.+.. .++.|++++|.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g------~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG------RIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE------CCCGGGGGCCCCSEEECCSSE
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC------cCChHHhCCCCCCEEECcCCc
Confidence 743 5688889998876666888765 46677777776 2222 33444332 36777877764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-39 Score=378.36 Aligned_cols=418 Identities=18% Similarity=0.137 Sum_probs=247.1
Q ss_pred EEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC
Q 004022 27 IFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 27 i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
-.||++++....+.+.+|.++++||+|++++|.++ ...|..+..+ .+|++|++++|.++.+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------------------WIHEDTFQSQ-HRLDTLVLTANPLIFM 96 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCSEE
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc------------------eeChhhccCc-cccCeeeCCCCccccc
Confidence 34666667666777788888888888888888774 2345667777 4888888888888776
Q ss_pred -CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCCCCCCCCCcEEEecCCcCcccc
Q 004022 107 -PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 107 -p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~~~~l~~L~~L~L~~~~~l~~~ 183 (779)
|..+ .+++|++|++++|+++.+ .|..++++++|++|++++|.+.. ..|.+.++++|++|++++|......
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred ChhhhcccccccEeeccccCcccC-------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 4455 788888888888888874 35667788888888888888655 4466777888888888888766544
Q ss_pred CC---cCCCcc--EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc--------------------------cccC
Q 004022 184 PQ---ISGKVT--RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS--------------------------TSFC 232 (779)
Q Consensus 184 ~~---~~~~L~--~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp--------------------------~~l~ 232 (779)
+. .+.+|+ .|++++|.+..+++......+|+.|++++|....... ..+.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 43 345666 7888888888777766666778888888775221111 1111
Q ss_pred CCC--CCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 233 KLR--SLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 233 ~l~--~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
.+. +|+.|++++|.+.+..+..++.+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-------- 321 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA-------- 321 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--------
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh--------
Confidence 111 5666666666666555556666666777777776666666666666677777776666555444444
Q ss_pred HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCCCCccEEEEecC
Q 004022 311 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGN 387 (779)
Q Consensus 311 ~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l~~L~~L~Ls~n 387 (779)
..+++|++|++++|.+....+...+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 322 ---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 322 ---------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp ---------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred ---------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 44455555555555544444333344455555555555555442 334455555555555555
Q ss_pred CCccC-ChhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCC-
Q 004022 388 NFESL-PAIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRS- 457 (779)
Q Consensus 388 ~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~- 457 (779)
.++.+ |..+..+++|+.|++++|.+.+..+. .+++|++|++++|......|. ++ +|++|++++|.+.+.
T Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGN 465 (606)
T ss_dssp SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGE
T ss_pred cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccc
Confidence 54432 33445555555555555554443322 124455555555543222221 22 455555555554431
Q ss_pred CC-----CCCCCccEEeeecCcCCcccCC---CCCCccEEEEecC
Q 004022 458 LP-----ELPLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNC 494 (779)
Q Consensus 458 l~-----~~~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C 494 (779)
++ ..+++|++|++++|......|. .+++|+.|++++|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 11 1124555555555433222222 2245555555554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-38 Score=373.05 Aligned_cols=477 Identities=20% Similarity=0.163 Sum_probs=274.2
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccc-----cCCCCccccccccceeecCCC-CCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-----KLPSMSTEEQLSYSKVQLPNG-LDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~-----~l~~l~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~n 101 (779)
.||++++....+.+.+|.++++|++|++++|.++++. .+++|..+......-..+|.. +..+ .+|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCC
Confidence 3556666666788889999999999999999887542 345555555555444556653 5555 48888888888
Q ss_pred CCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC---CCCCCCCcEEEecC
Q 004022 102 PLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---NLHFVCPVTINFSY 176 (779)
Q Consensus 102 ~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~ 176 (779)
.++.+|. .| .+++|++|+|++|.++.. .|..++++++|++|++++|.+....+. ...+++|+.|++++
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ccCccChhHccccCCCCEEECCCCccccc-------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 8877764 34 778888888888877764 556677778888888877775443332 22456777777777
Q ss_pred CcCccccCCcC------------------------------CCccEEEecCcCCccc-CcccCCCCC--ccEEeeeCCCC
Q 004022 177 CVNLIEFPQIS------------------------------GKVTRLYLGQSAIEEV-PSSIECLTD--LEVLDLRGCKR 223 (779)
Q Consensus 177 ~~~l~~~~~~~------------------------------~~L~~L~L~~n~i~~l-p~~l~~l~~--L~~L~L~~~~~ 223 (779)
|......|..+ .+|+.|++++|.+..+ |..+..++. |++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 75543333211 3455566666665444 334544433 77777777776
Q ss_pred CcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC------cCCc----cCCCCCCCCEEeccCCC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT------ELPS----SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~------~lp~----~l~~l~~L~~L~L~~~~ 293 (779)
.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+++++... .+|. .+..+++|+.|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 6666666677777777777777766666666777777777777654332 3332 46667777777777777
Q ss_pred CCCCCCCCCCCchhHHH-HHhhcc----------------------------cCCcCCccccCccccCeeeccCCCCCCc
Q 004022 294 KLDNLPDNIGSLEYLYY-ILAAAS----------------------------AISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~-~~~~~~----------------------------~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+.+..+..+..+++|+. .+.++. .....|..+..+++|+.|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 66666666666666666 333322 1112233444455555555555555444
Q ss_pred cChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc---cCChhccCCCCCCEEEcCCCCCCCcCCCC-
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE---SLPAIIKQMSQLRFIHLEDFNMLQSLPEL- 419 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~- 419 (779)
++...+.++++|+.|++++|.+.. .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 433334455555555555555544 2334455555555555555443 34455555555555555555555433332
Q ss_pred --CCCccEEEEecCCCCCC------------CCCCCCCccEEEeeCCCCCCCCCC---CCCCccEEeeecCcCCcccCCC
Q 004022 420 --PLCLKYLHLIDCKMLQS------------LPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPEL 482 (779)
Q Consensus 420 --~~~L~~L~l~~c~~l~~------------lp~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~ 482 (779)
.++|++|++++|..... +..++ +|++|++++|.+....+. .+++|++|++++| .++.+|..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 578 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS 578 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHh
Confidence 24555555555543211 11111 555666655555432222 1245556666543 33344421
Q ss_pred ----CCCccEEEEecCCCCCCccc-----cccCCcccchhhh
Q 004022 483 ----PLCLQLLTVRNCNRLQSLPE-----ILLCLQELDASVL 515 (779)
Q Consensus 483 ----~~sL~~L~i~~C~~L~~lp~-----~l~~L~~L~~~~~ 515 (779)
+++|+.|++++| .++.+|. .+.+|+.|++.++
T Consensus 579 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred HhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCC
Confidence 245556666553 4444443 2345555555554
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-39 Score=377.54 Aligned_cols=452 Identities=17% Similarity=0.118 Sum_probs=337.3
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC-
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL- 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l- 106 (779)
.||++++....+.+.+|+++++||+|++++|.++ ...|..+..+ ++|++|++++|.++.+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------------------TIEDKAWHGL-HHLSNLILTGNPIQSFS 96 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCCCCC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc------------------ccCHHHhhch-hhcCEeECCCCcccccC
Confidence 3566666666778888888999999999888874 2235566777 5999999999999988
Q ss_pred CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCcccc
Q 004022 107 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 107 p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~~ 183 (779)
|..| ++++|++|+|++|.++.+ .+..++++++|++|++++|.+.. .+|. +.++++|++|++++|......
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred hhhcCCcccCCEEEccCCccccc-------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 6667 899999999999999875 44678899999999999998765 5666 667999999999999877666
Q ss_pred CCcCCC-------ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCC-cccccccCCCCCCcEEec-------------
Q 004022 184 PQISGK-------VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL-KRISTSFCKLRSLVTLIL------------- 242 (779)
Q Consensus 184 ~~~~~~-------L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L------------- 242 (779)
+..+.. +..|++++|.+..++.......+|+.|++++|... ...|..+.++++|+.+.+
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 665543 34899999999999987777779999999999865 345555666777766655
Q ss_pred --------------------ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCC
Q 004022 243 --------------------LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 243 --------------------~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l 302 (779)
..+...+..|. +..+++|+.|+++++.++.+| .+..+++|+.|++++|.+ +.+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C
Confidence 33344445555 788899999999999999888 788899999999999888 77773 4
Q ss_pred CCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCcc--ChhhccCCCCCcEEEecCCCCccCCcccCCCCCc
Q 004022 303 GSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESF--PRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379 (779)
Q Consensus 303 ~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L 379 (779)
.+++|+. .+.++.....+ .+..+++|++|++++|.+.+.. +. .+..+++|+.|++++|.+..+|..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCC
Confidence 7777777 55555444433 4567788888888888776542 22 2567788888888888888877778888888
Q ss_pred cEEEEecCCCccCC--hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCC-CCC----CCCCccEEEe
Q 004022 380 EILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQS-LPV----LPFCLESLDL 449 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~-lp~----l~~~L~~L~l 449 (779)
++|++++|.++.++ ..+..+++|+.|++++|.+.+..|.. .++|++|++++|..... +|. ++ +|++|++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~L 480 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDL 480 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEEC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEEC
Confidence 88888888877554 36778888888888888877766653 36788888888765432 332 23 7888888
Q ss_pred eCCCCCCCCCCC---CCCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCcccccc----CCcccchhhh
Q 004022 450 TGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEILL----CLQELDASVL 515 (779)
Q Consensus 450 s~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~l~----~L~~L~~~~~ 515 (779)
++|.+.+..|.. +++|++|++++|......|. .+++|+.|++++|. ++.+|..+. +|+.|++.++
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 888877766653 36788888888755444443 34678888888754 667776543 3555666555
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-38 Score=364.26 Aligned_cols=435 Identities=17% Similarity=0.171 Sum_probs=276.5
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccc-----cCCCCccccccccceeec-CCCCCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-----KLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~-----~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n 101 (779)
.||++++....+.+.+|+++++|++|++++|.++++. .+++|..+......-..+ +..+..+ ++|++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC-CcccEEECCCC
Confidence 4677777777888999999999999999999997542 233444444333333333 3345555 47777777777
Q ss_pred CCCCC--CCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCc--EEeccCCCCCCCCCCCCCCCCCcEEEecCC
Q 004022 102 PLRTL--PSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLS--ALSFKGCQSLRSFPSNLHFVCPVTINFSYC 177 (779)
Q Consensus 102 ~l~~l--p~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~--~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~ 177 (779)
.++.+ |..+.+++|++|++++|.++.+ .|..++.+++|+ .|++++|.+....|......+|+.|++++|
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYL-------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEE-------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccccCcccccCCcccCEEEcccCccccc-------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 77765 4444777777777777777764 455677777777 777777776666666666677777777776
Q ss_pred cCccccCC-----------------------------cC--CCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCc
Q 004022 178 VNLIEFPQ-----------------------------IS--GKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLK 225 (779)
Q Consensus 178 ~~l~~~~~-----------------------------~~--~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 225 (779)
......+. .+ .+|+.|++++|.+..++.. ++.+++|++|++++|.+.
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 52211110 00 1567777777777776653 677777888888777644
Q ss_pred ccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCcc-CCCCCCCCEEeccCCCCCCCCCCCCC
Q 004022 226 RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSS-FENLPGLEVLFVEDCSKLDNLPDNIG 303 (779)
Q Consensus 226 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~ 303 (779)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+.+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----- 366 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD----- 366 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-----
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-----
Confidence 56667777777888888777777766777777777888888777776 55554 777777788877777665433
Q ss_pred CchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-C-cccCCCCCccE
Q 004022 304 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-P-QEIAYLSSLEI 381 (779)
Q Consensus 304 ~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p-~~l~~l~~L~~ 381 (779)
..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+... + ..+..+++|++
T Consensus 367 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 367 ----------------CCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp ----------------ESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred ----------------CcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 01333455666666666666655443332 45566666666666666552 2 23566666666
Q ss_pred EEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCc-CC-----CCCCCccEEEEecCCCCCCCC----CCCCCccEEEee
Q 004022 382 LYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQS-LP-----ELPLCLKYLHLIDCKMLQSLP----VLPFCLESLDLT 450 (779)
Q Consensus 382 L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~-~~-----~~~~~L~~L~l~~c~~l~~lp----~l~~~L~~L~ls 450 (779)
|++++|.++.. |..+..+++|++|++++|++.+. ++ ..+++|++|++++|......| .++ +|++|+++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls 508 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLS 508 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECC
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-CCCEEECC
Confidence 66666666643 34566666666666666666542 11 123566666666665433222 222 67777777
Q ss_pred CCCCCCCCCCCC---CCccEEeeecCcCCcccCCC---CCCccEEEEecCC
Q 004022 451 GCNMLRSLPELP---LCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCN 495 (779)
Q Consensus 451 ~n~~l~~l~~~~---~~L~~L~l~~c~~L~~l~~~---~~sL~~L~i~~C~ 495 (779)
+|++.+..|..+ ++| +|++++|......|.. +++|+.|++++|+
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 777766655433 456 7777776544333322 3577778877765
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=370.47 Aligned_cols=456 Identities=20% Similarity=0.201 Sum_probs=324.2
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCC-
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL- 106 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~l- 106 (779)
||++++....+.+.+|.++++||+|++++|... ..+ |..+..+ .+|++|++++|.++.+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~------------------~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------------------LTIDKEAFRNL-PNLRILDLGSSKIYFLH 89 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCC------------------CEECTTTTSSC-TTCCEEECTTCCCCEEC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCc------------------cccCHHHhcCC-CCCCEEECCCCcCcccC
Confidence 455555555667777888888888888877442 244 5567777 4888999988888877
Q ss_pred CCCC-CCCCCcEEECCCCCCCCccCCCCcccCcc--ccCCCCCcEEeccCCCCCCCCC--CCCCCCCCcEEEecCCcCcc
Q 004022 107 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSS--IQNFKYLSALSFKGCQSLRSFP--SNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 107 p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~--~~~l~~L~~L~Ls~n~~l~~~p--~~~~l~~L~~L~L~~~~~l~ 181 (779)
|..| .+++|++|+|++|.++.. +|.. |+++++|++|+|++|.+.+..+ .+.++++|++|++++|....
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDA-------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSC-------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred HhHccCCcccCEeeCcCCCCCcc-------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 5566 888888999988888753 3433 7788888888888888665544 26678888888888887766
Q ss_pred ccCCcC-----CCccEEEecCcCCcc-cCcccCCCCC------ccEEeeeCCCCCcccccccC-----------------
Q 004022 182 EFPQIS-----GKVTRLYLGQSAIEE-VPSSIECLTD------LEVLDLRGCKRLKRISTSFC----------------- 232 (779)
Q Consensus 182 ~~~~~~-----~~L~~L~L~~n~i~~-lp~~l~~l~~------L~~L~L~~~~~~~~lp~~l~----------------- 232 (779)
..+..+ .+|+.|++++|.+.. .|..++.+.+ |+.|++++|.+....+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555443 577888888887753 4445554444 88888888865544433222
Q ss_pred -------------------C--CCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccCCCCCCCCEEecc
Q 004022 233 -------------------K--LRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENLPGLEVLFVE 290 (779)
Q Consensus 233 -------------------~--l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~ 290 (779)
+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 1 257888888888777777777888888888888888887664 457788888888888
Q ss_pred CCCCCCCCCCCCCCchhHHH-HHhhcccCCcC-CccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc
Q 004022 291 DCSKLDNLPDNIGSLEYLYY-ILAAASAISQL-PSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE 368 (779)
Q Consensus 291 ~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~ 368 (779)
+|.+.+..|..+..+++|+. .+.++ .+..+ +..+..+++|+.|++++|.+... ..+++|+.|++++|.++.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCccc
Confidence 88777777777778887777 44444 34444 34577788888888888877642 236778888888888877
Q ss_pred CCcccCCCCCccEEEEecCCCccCCh--hccCCCCCCEEEcCCCCCCCcC----CCCCCCccEEEEecCCCCCC------
Q 004022 369 IPQEIAYLSSLEILYLSGNNFESLPA--IIKQMSQLRFIHLEDFNMLQSL----PELPLCLKYLHLIDCKMLQS------ 436 (779)
Q Consensus 369 ~p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~~~~~~----~~~~~~L~~L~l~~c~~l~~------ 436 (779)
+|.. ..+++.|++++|+++.++. .+..+++|+.|++++|.+.+.. +...++|+.|++++|..-..
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 7653 4567888888888876653 4568899999999999887543 23457899999998865321
Q ss_pred ---CCCCCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccCC--CCCCccEEEEecCCCCCCccccccCCc
Q 004022 437 ---LPVLPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE--LPLCLQLLTVRNCNRLQSLPEILLCLQ 508 (779)
Q Consensus 437 ---lp~l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~--~~~sL~~L~i~~C~~L~~lp~~l~~L~ 508 (779)
+..++ +|++|++++|.+.+..+.. +++|++|++++| .+..++. .+++|+.|+++++.-....|..+.+|+
T Consensus 473 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 473 WDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp SSCSSCBC-CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred hhhhcCcc-cccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcC
Confidence 22233 7889999999888777653 378899999887 4555553 236899999999665555566777888
Q ss_pred ccchhhhhhhccCCC
Q 004022 509 ELDASVLEKLSKHSP 523 (779)
Q Consensus 509 ~L~~~~~~~l~~~~p 523 (779)
.|++.+| .+...|+
T Consensus 551 ~l~l~~N-p~~C~c~ 564 (844)
T 3j0a_A 551 VLDITHN-KFICECE 564 (844)
T ss_dssp EEEEEEE-CCCCSSS
T ss_pred EEEecCC-Ccccccc
Confidence 8888776 2333443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-38 Score=365.96 Aligned_cols=388 Identities=15% Similarity=0.185 Sum_probs=256.5
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCC------------------------
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPL------------------------ 103 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l------------------------ 103 (779)
.+++.|+|+++.++ ..+|..+..+ ++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~------------------g~lp~~l~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (636)
T 4eco_A 81 GRVTGLSLEGFGAS------------------GRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141 (636)
T ss_dssp CCEEEEECTTSCCE------------------EEECGGGGGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHH
T ss_pred CCEEEEEecCcccC------------------CcCChHHhcC-ccceEEECcCCccccCCccccccccccCchHHHHHHH
Confidence 57899999999885 5788888888 5999999988843
Q ss_pred ------------------------------------------------------CCCCCCC-CCCCCcEEECCCCCCCCc
Q 004022 104 ------------------------------------------------------RTLPSNF-KPKNLVELNLRCSKVEQP 128 (779)
Q Consensus 104 ------------------------------------------------------~~lp~~~-~l~~L~~L~L~~n~i~~l 128 (779)
+.+|..+ ++++|++|+|++|.++..
T Consensus 142 ~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~ 221 (636)
T 4eco_A 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221 (636)
T ss_dssp HTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG
T ss_pred HhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccc
Confidence 2356555 677788888887777651
Q ss_pred -----cCCCC-----cccCcccc--CCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCc-Ccc-ccCCcC------
Q 004022 129 -----WEGEK-----ACVPSSIQ--NFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCV-NLI-EFPQIS------ 187 (779)
Q Consensus 129 -----~~g~~-----~~lp~~~~--~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~-~l~-~~~~~~------ 187 (779)
|.... +.+|..++ ++++|++|+|++|.+.+.+|. +.++++|++|++++|. ... .+|..+
T Consensus 222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 10000 00567777 777888888887777777775 4557778888888776 444 455433
Q ss_pred ---CCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc-C
Q 004022 188 ---GKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH-L 261 (779)
Q Consensus 188 ---~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L 261 (779)
.+|+.|++++|.+..+|. .++++++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |
T Consensus 302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379 (636)
T ss_dssp GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccC
Confidence 567777787777777777 77777778888887777766777 6777777788888777665 66777777777 7
Q ss_pred cEeecCCcCCCcCCccCCCCC--CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCC
Q 004022 262 KRIYSDRTPITELPSSFENLP--GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
++|++++|.++.+|..+..++ +|+.|++++|.+.+..|..+... ......+++|+.|++++|
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~----------------~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL----------------DPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT----------------CSSCCCCCCEEEEECCSS
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc----------------ccccccCCCCCEEECcCC
Confidence 888888777777777666544 77778887777777666655410 000114456666666666
Q ss_pred CCCCccChhhccCCCCCcEEEecCCCCccCCcccCC--------CCCccEEEEecCCCccCChhcc--CCCCCCEEEcCC
Q 004022 340 KGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAY--------LSSLEILYLSGNNFESLPAIIK--QMSQLRFIHLED 409 (779)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~--------l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~ 409 (779)
.+.. ++...+..+++|+.|++++|.++.+|..... +++|++|+|++|+++.+|..+. .+++|+.|++++
T Consensus 444 ~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS
T ss_pred ccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC
Confidence 6663 3333345566666666666666665554322 1266666666666666666655 666666666666
Q ss_pred CCCCCcCCCC---CCCccEEEEec------CCCCCCCCC----CCCCccEEEeeCCCCCCCCCC-CCCCccEEeeecCcC
Q 004022 410 FNMLQSLPEL---PLCLKYLHLID------CKMLQSLPV----LPFCLESLDLTGCNMLRSLPE-LPLCLQYLNLEDCNM 475 (779)
Q Consensus 410 n~~~~~~~~~---~~~L~~L~l~~------c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~-~~~~L~~L~l~~c~~ 475 (779)
|++.+ +|.. .++|+.|++++ |.....+|. ++ +|++|++++|.+ +.+|. ..++|++|++++|+.
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 66665 4442 35666666643 333344442 22 677777777777 55554 447788888887754
Q ss_pred C
Q 004022 476 L 476 (779)
Q Consensus 476 L 476 (779)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=354.35 Aligned_cols=472 Identities=16% Similarity=0.133 Sum_probs=369.4
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.+|+++.....++.... ++|+.|++++|.++ ...+..+..+ ++|++|++++|.++.++
T Consensus 15 ~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~i~ 72 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLK------------------ILKSYSFSNF-SELQWLDLSRCEIETIE 72 (606)
T ss_dssp EEECTTSCCSSCCTTSC---TTCCEEECTTSCCC------------------EECTTTTTTC-TTCCEEECTTCCCCEEC
T ss_pred ceEccCCCcccCCCCCC---CCcCEEECCCCCcC------------------EeChhhccCC-ccCcEEeCCCCcccccC
Confidence 57787777767776433 78999999999985 2234467777 59999999999999885
Q ss_pred C-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CCCCCCCCcEEEecCCcCcc-cc
Q 004022 108 S-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SNLHFVCPVTINFSYCVNLI-EF 183 (779)
Q Consensus 108 ~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~-~~ 183 (779)
. .| ++++|++|+|++|.++.+ .|.+|+++++|++|+|++|.+....+ .+.++++|++|++++|.... .+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred HHHhhchhhcCEeECCCCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec
Confidence 4 56 899999999999999985 68899999999999999999655443 36779999999999998765 55
Q ss_pred CCc---CCCccEEEecCcCCcccCc-ccCCCCCc----cEEeeeCCCCCcccccccCCCCCCcEEecccccCC-cccchh
Q 004022 184 PQI---SGKVTRLYLGQSAIEEVPS-SIECLTDL----EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL-EHFPEI 254 (779)
Q Consensus 184 ~~~---~~~L~~L~L~~n~i~~lp~-~l~~l~~L----~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~~ 254 (779)
|.. +.+|+.|++++|.+..++. .++.+++| ++|++++|.+.+..+..+. ..+|++|++++|... +..|..
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHH
Confidence 654 4679999999999987754 56655554 4899999987665555444 459999999999876 456777
Q ss_pred hhcCccCcEeec---------------------------------CCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 255 LEKMEHLKRIYS---------------------------------DRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 255 l~~l~~L~~L~L---------------------------------~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
++.+++|+.+++ ..+.+......+..+++|+.|++++|.+ ..+| .
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~ 302 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-D 302 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-C
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-h
Confidence 888888777665 3344443333377889999999999887 4566 7
Q ss_pred CCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCCC
Q 004022 302 IGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLS 377 (779)
Q Consensus 302 l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l~ 377 (779)
+..+++|+. .+.+|.. +.+|. + .+++|+.|++++|......+ +..+++|+.|++++|.++.. |..+..++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 888889998 5555544 88884 5 99999999999997666542 56899999999999999875 78889999
Q ss_pred CccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC-C---CCCCccEEEEecCCCCCCCCC----CCCCccEEEe
Q 004022 378 SLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP-E---LPLCLKYLHLIDCKMLQSLPV----LPFCLESLDL 449 (779)
Q Consensus 378 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~---~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~l 449 (779)
+|++|++++|.++.+|..+..+++|+.|++++|.+.+..+ . .+++|++|++++|......|. ++ +|++|++
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEEC
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEEC
Confidence 9999999999999999899999999999999999988776 2 358899999999986554443 33 8999999
Q ss_pred eCCCCCCC-CCCC---CCCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhc
Q 004022 450 TGCNMLRS-LPEL---PLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLS 519 (779)
Q Consensus 450 s~n~~l~~-l~~~---~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~ 519 (779)
++|.+.+. +|.. +++|++|++++|......|. .+++|++|++++|.-....|..+ .+|+.|++++|
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N---- 531 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN---- 531 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS----
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC----
Confidence 99998873 5543 48999999999865555454 35799999999985444446655 46778888877
Q ss_pred cCCCCCcccccc---cccccceeecccccc
Q 004022 520 KHSPDLQWAPES---LKSAAICFEFTNCLK 546 (779)
Q Consensus 520 ~~~p~l~~lp~~---l~~~l~~l~~~~C~~ 546 (779)
.+..+|.. ++..++.+.+.+++-
T Consensus 532 ----~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 532 ----RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ----CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ----cCcccCHhHhhhcccCcEEEccCCCc
Confidence 35556655 333578888877653
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-35 Score=349.13 Aligned_cols=498 Identities=17% Similarity=0.163 Sum_probs=344.2
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCccccccc-----CCCCccccccccceeec-CCCCCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEK-----LPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~-----l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n 101 (779)
.+|+++.....++.. +. ++|++|++++|.++++.. ++++..+......-..+ |..+..+ ++|++|++++|
T Consensus 8 ~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSS
T ss_pred eeECCCCCccccccc-cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCC
Confidence 477777766666653 32 789999999999986542 34444444433332333 3345556 58899999988
Q ss_pred CCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCc
Q 004022 102 PLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCV 178 (779)
Q Consensus 102 ~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~ 178 (779)
.++.+|.. | .+++|++|+|++|+++.+ .|.+|+++++|++|++++|.+....|. +.++++|++|++++|.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCcc-------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 88888874 5 888899999998888764 456788888999999988887665555 5568889999998887
Q ss_pred CccccCC-----cCCCccEEEecCcCCcccCc-ccCCC---------------------------CCccEEeeeCCCCCc
Q 004022 179 NLIEFPQ-----ISGKVTRLYLGQSAIEEVPS-SIECL---------------------------TDLEVLDLRGCKRLK 225 (779)
Q Consensus 179 ~l~~~~~-----~~~~L~~L~L~~n~i~~lp~-~l~~l---------------------------~~L~~L~L~~~~~~~ 225 (779)
.....+. ...+|+.|++++|.+..++. .++.+ ++|+.|++++|.+.+
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 6544332 22578888998888876653 33333 456666777776666
Q ss_pred ccccccCCCCC--CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCC-----C
Q 004022 226 RISTSFCKLRS--LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLD-----N 297 (779)
Q Consensus 226 ~lp~~l~~l~~--L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~-----~ 297 (779)
..|..+..++. |++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|...+ .
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 66666666644 77777777777766667777777777777777777754 3457777777777777654332 2
Q ss_pred CCC----CCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCc-cChhhcc--CCCCCcEEEecCCCCcc-
Q 004022 298 LPD----NIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-FPRTFLL--GLSAMGLLHISDYAVRE- 368 (779)
Q Consensus 298 lp~----~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~--~l~~L~~L~Ls~~~l~~- 368 (779)
+|. .+..+++|+. .+.++...+..+..+..+++|++|++++|.+... ++...+. ..++|+.|++++|.++.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 222 5566677777 4444444444455677778888888887764322 2211121 23578888888888888
Q ss_pred CCcccCCCCCccEEEEecCCCc-cCC-hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCC--CCCCC--
Q 004022 369 IPQEIAYLSSLEILYLSGNNFE-SLP-AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKML--QSLPV-- 439 (779)
Q Consensus 369 ~p~~l~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l--~~lp~-- 439 (779)
.|..+..+++|+.|++++|.++ .+| ..+..+++|++|++++|.+.+..+.. .++|+.|++++|..- ..+|.
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 4667888999999999999987 465 67889999999999999876655543 478999999988642 23332
Q ss_pred --CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccC------------CCCCCccEEEEecCCCCCCccc
Q 004022 440 --LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLP------------ELPLCLQLLTVRNCNRLQSLPE 502 (779)
Q Consensus 440 --l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~------------~~~~sL~~L~i~~C~~L~~lp~ 502 (779)
++ +|++|++++|.+.+..+.. +++|++|++++|. +..++ ..+++|+.|++++| .++.+|.
T Consensus 477 ~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 477 QPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 33 8999999999988766653 4789999999975 33321 23478999999985 6778885
Q ss_pred c----ccCCcccchhhhhhhccCCCCCcccccc-cc--cccceeecccccccC
Q 004022 503 I----LLCLQELDASVLEKLSKHSPDLQWAPES-LK--SAAICFEFTNCLKLN 548 (779)
Q Consensus 503 ~----l~~L~~L~~~~~~~l~~~~p~l~~lp~~-l~--~~l~~l~~~~C~~l~ 548 (779)
. +.+|+.|+++++ .+..+|.. +. ..++.+.+.++ ++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N--------~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLN--------NLNTLPASVFNNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp TTTTTCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred HHcccccCcceeECCCC--------CCCcCCHhHhCCCCCCCEEECCCC-cCC
Confidence 3 456777777766 45555554 22 34788888877 344
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.4e-37 Score=361.98 Aligned_cols=307 Identities=15% Similarity=0.162 Sum_probs=243.8
Q ss_pred CCCCCCCCCC-CCCCCcEEECCCCCCCCc-----cCCC-----CcccCcccc--CCCCCcEEeccCCCCCCCCCC-CCCC
Q 004022 101 YPLRTLPSNF-KPKNLVELNLRCSKVEQP-----WEGE-----KACVPSSIQ--NFKYLSALSFKGCQSLRSFPS-NLHF 166 (779)
Q Consensus 101 n~l~~lp~~~-~l~~L~~L~L~~n~i~~l-----~~g~-----~~~lp~~~~--~l~~L~~L~Ls~n~~l~~~p~-~~~l 166 (779)
|.++.+|..+ ++++|++|+|++|+++.. |... ...+|..++ ++++|++|+|++|.+.+.+|. +.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 6666688877 889999999999988760 0000 001688877 999999999999988888886 5669
Q ss_pred CCCcEEEecCCc-Ccc-ccCCc----------CCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccccccC
Q 004022 167 VCPVTINFSYCV-NLI-EFPQI----------SGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRISTSFC 232 (779)
Q Consensus 167 ~~L~~L~L~~~~-~l~-~~~~~----------~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~ 232 (779)
++|+.|++++|. ... .+|.. +++|+.|++++|.+..+|. .++++++|+.|++++|.+. .+| .+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 999999999997 544 45543 3489999999999999999 8999999999999999877 888 799
Q ss_pred CCCCCcEEecccccCCcccchhhhcCcc-CcEeecCCcCCCcCCccCCCCCC--CCEEeccCCCCCCCCCCCCCCchhHH
Q 004022 233 KLRSLVTLILLGCLNLEHFPEILEKMEH-LKRIYSDRTPITELPSSFENLPG--LEVLFVEDCSKLDNLPDNIGSLEYLY 309 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~~~~~~~lp~~l~~l~~L~ 309 (779)
.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+..++. |+.|++++|.+.+.+|..
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------- 663 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-------- 663 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC--------
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc--------
Confidence 9999999999999877 88888999999 99999999999999988877754 999999999887765532
Q ss_pred HHHhhcccCCcCCcccc--CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCC--------CCc
Q 004022 310 YILAAASAISQLPSSVA--LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYL--------SSL 379 (779)
Q Consensus 310 ~~~~~~~~~~~lp~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l--------~~L 379 (779)
+..+. .+++|+.|++++|.+. .+|...+..+++|+.|++++|.+..+|..+... ++|
T Consensus 664 ------------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 664 ------------SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp ------------SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred ------------hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 11122 3457889999999887 455555667888999999999888887765432 389
Q ss_pred cEEEEecCCCccCChhcc--CCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCC
Q 004022 380 EILYLSGNNFESLPAIIK--QMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCK 432 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~ 432 (779)
+.|+|++|+++.+|..+. .+++|+.|+|++|.+.+ +|.. +++|+.|++++|+
T Consensus 731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 999999999998888886 88999999999988876 5542 3667777776643
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=353.61 Aligned_cols=470 Identities=18% Similarity=0.101 Sum_probs=360.2
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC-CC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP-LR 104 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~-l~ 104 (779)
+...|+++.....++. -.++|+.|+|++|.++ ...+..+..+ .+|++|++++|. +.
T Consensus 6 ~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~------------------~i~~~~~~~l-~~L~~LdLs~n~~~~ 62 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR------------------TVTASSFPFL-EQLQLLELGSQYTPL 62 (844)
T ss_dssp TEEEEESCCCSSCCCS----SCTTCCEEEEESCCCC------------------EECSSSCSSC-CSCSEEEECTTCCCC
T ss_pred ceEEEccCCCCCCCCC----CCCCcCEEECCCCcCC------------------ccChhHCccc-ccCeEEeCCCCCCcc
Confidence 3467777777666765 4589999999999985 2346677778 599999999995 56
Q ss_pred CC-CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC---CCCCCCCcEEEecCCcC
Q 004022 105 TL-PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---NLHFVCPVTINFSYCVN 179 (779)
Q Consensus 105 ~l-p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~ 179 (779)
.+ |..| ++++|++|+|++|.++.+ .|.+|+++++|++|+|++|.+...+|. +.++++|++|++++|..
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIYFL-------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCCEE-------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCccc-------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 77 5566 899999999999999986 688999999999999999997765554 67899999999999987
Q ss_pred ccccC----CcCCCccEEEecCcCCccc-CcccCCC--CCccEEeeeCCCCCcccccccCCCCC------CcEEeccccc
Q 004022 180 LIEFP----QISGKVTRLYLGQSAIEEV-PSSIECL--TDLEVLDLRGCKRLKRISTSFCKLRS------LVTLILLGCL 246 (779)
Q Consensus 180 l~~~~----~~~~~L~~L~L~~n~i~~l-p~~l~~l--~~L~~L~L~~~~~~~~lp~~l~~l~~------L~~L~L~~~~ 246 (779)
....+ ..+.+|+.|++++|.+..+ +..++.+ ++|+.|++++|.+.+..|..+..+.+ |++|++++|.
T Consensus 136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 66443 3457899999999999654 5566666 89999999999998888877766665 9999999997
Q ss_pred CCcccchhhhc--------------------------------------CccCcEeecCCcCCCcCC-ccCCCCCCCCEE
Q 004022 247 NLEHFPEILEK--------------------------------------MEHLKRIYSDRTPITELP-SSFENLPGLEVL 287 (779)
Q Consensus 247 ~~~~~p~~l~~--------------------------------------l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L 287 (779)
.....+..+.. .++|+.|++++|.+..++ ..+..+++|+.|
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 65544433321 267899999999988664 458889999999
Q ss_pred eccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCC
Q 004022 288 FVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366 (779)
Q Consensus 288 ~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l 366 (779)
++++|.+.+..|..+..+++|+. .+.+|......|..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEEEETCCS
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEECCCCCC
Confidence 99999888888888888888888 5555554455577888899999999999987665444 367889999999999988
Q ss_pred ccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC----CCCCCccEEEEecCCCCCCC----C
Q 004022 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQSL----P 438 (779)
Q Consensus 367 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~L~~L~l~~c~~l~~l----p 438 (779)
+.++. +++|+.|++++|+++.+|.. ..+++.|++++|.+.+.-. ..+++|+.|++++|...... +
T Consensus 375 ~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 375 TTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp CCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 87654 78899999999999888753 5678899999988766322 14688999999999754322 1
Q ss_pred CCCCCccEEEeeCCCCCCCC-----CC---CCCCccEEeeecCcCCcccCC----CCCCccEEEEecCCCCCCccccc--
Q 004022 439 VLPFCLESLDLTGCNMLRSL-----PE---LPLCLQYLNLEDCNMLRSLPE----LPLCLQLLTVRNCNRLQSLPEIL-- 504 (779)
Q Consensus 439 ~l~~~L~~L~ls~n~~l~~l-----~~---~~~~L~~L~l~~c~~L~~l~~----~~~sL~~L~i~~C~~L~~lp~~l-- 504 (779)
....+|++|++++|.+.... +. .+++|++|++++|. +..++. .+++|+.|++++| +++.+|...
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeECCCC-CCCccChhhhh
Confidence 22348999999999886332 22 23789999999984 444442 3579999999996 678777543
Q ss_pred cCCcccchhhhhhhccCCCCCcccccccccccceeeccc
Q 004022 505 LCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTN 543 (779)
Q Consensus 505 ~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~ 543 (779)
.+|+.|++++| .+...+...-..+..+.+.+
T Consensus 526 ~~L~~L~Ls~N--------~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 526 ANLEILDISRN--------QLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp SCCCEEEEEEE--------CCCCCCSCCCSSCCEEEEEE
T ss_pred ccccEEECCCC--------cCCCCChhHhCCcCEEEecC
Confidence 58999999988 23222222122466677654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-36 Score=344.47 Aligned_cols=448 Identities=18% Similarity=0.199 Sum_probs=249.9
Q ss_pred ecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC
Q 004022 30 DLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN 109 (779)
Q Consensus 30 d~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~ 109 (779)
|++++....+.+.+|.++++||+|++++|.++ ...|..+..+ .+|++|++++|.++.+|..
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRIN------------------TIEGDAFYSL-GSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------------------EECTTTTTTC-TTCCEEECTTSCCCSCCHH
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcC------------------ccChhhcccc-ccCCEEECCCCccCccCHH
Confidence 33444444444555555666666666655553 1222344444 3666666666666655543
Q ss_pred -C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC--CCCCCCCCcEEEecCCcCccccCC
Q 004022 110 -F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP--SNLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 110 -~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p--~~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
+ .+++|++|++++|.++.+. .|..++++++|++|++++|...+.+| .+.++++|++|++++|......|.
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HhccCCCCcEEECCCCcccccc------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 3 5566666666666655320 34455566666666666665444444 244566666666666655544444
Q ss_pred cCC---CccEEEecCcCCcccCccc-CCCCCccEEeeeCCCCCccc--c-cccCCCCCCcEEecccccCCcccc----hh
Q 004022 186 ISG---KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI--S-TSFCKLRSLVTLILLGCLNLEHFP----EI 254 (779)
Q Consensus 186 ~~~---~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~l--p-~~l~~l~~L~~L~L~~~~~~~~~p----~~ 254 (779)
.+. +|+.|++++|.+..+|..+ +.+++|++|++++|.+.+.. | .....+++|+.|++++|...+..+ ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 432 3455556665555555433 34556666666665544321 1 112234556666666655443222 22
Q ss_pred hhcCccCcEeecCCcCCCcCCc-------cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 255 LEKMEHLKRIYSDRTPITELPS-------SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 255 l~~l~~L~~L~L~~n~i~~lp~-------~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+..+++|+.+++++|.+..++. .+..+++|+.|++.++.+.... ....++.....
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~------------------~~~~l~~~~~~ 308 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY------------------LFYDLSTVYSL 308 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG------------------GSCCCCHHHHH
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh------------------hcccchhhhhh
Confidence 3445566666666655543321 1344555666666554322110 01112222334
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CC---cccCCCCCccEEEEecCCCccCC---hhccCCC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IP---QEIAYLSSLEILYLSGNNFESLP---AIIKQMS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p---~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~ 400 (779)
.++|+.|++++|.+. .+|...+..+++|+.|++++|.+.+ +| ..++.+++|++|++++|+++.++ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 456777777777765 3444434567777777777777766 32 23566777777777777777665 3467777
Q ss_pred CCCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCC-CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC
Q 004022 401 QLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML 476 (779)
Q Consensus 401 ~L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L 476 (779)
+|++|++++|.+. .+|. .+++|++|++++|. +..+|. +|.+|++|++++|++.+.+ ..+++|++|++++| .+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N-~l 463 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFS-LFLPRLQELYISRN-KL 463 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSS-CC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhc-ccCChhcEEECCCC-cc
Confidence 7777777777665 4454 23667777777775 334442 4457888888888776643 34477888888876 45
Q ss_pred cccCCC--CCCccEEEEecCCCCCCccc-c---ccCCcccchhhhhhhccCCCCCcc
Q 004022 477 RSLPEL--PLCLQLLTVRNCNRLQSLPE-I---LLCLQELDASVLEKLSKHSPDLQW 527 (779)
Q Consensus 477 ~~l~~~--~~sL~~L~i~~C~~L~~lp~-~---l~~L~~L~~~~~~~l~~~~p~l~~ 527 (779)
+.+|.. +++|+.|++++| .++.+|+ . +.+|+.|++.+| .+...||.+.+
T Consensus 464 ~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~ 518 (549)
T 2z81_A 464 KTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN-PWDCSCPRIDY 518 (549)
T ss_dssp SSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS-CBCCCHHHHHH
T ss_pred CcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC-CccCCCccHHH
Confidence 566642 567888888875 4555543 2 346677777776 34455554433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.3e-36 Score=342.45 Aligned_cols=460 Identities=15% Similarity=0.096 Sum_probs=319.7
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
.|.+++....+++..+ ++|++|++++|.++ ...|..+..+ ++|++|++++|.++.++.
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKIT------------------YIGHGDLRAC-ANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCC------------------EECSSTTSSC-TTCCEEECTTSCCCEECT
T ss_pred EECCCCccccccccCC---CCccEEECcCCccC------------------ccChhhhhcC-CcccEEECCCCCcCccCh
Confidence 3555555556665433 68999999999884 2335567777 589999999999988874
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCCCCcEEEecCCcCccccC
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
.| .+++|++|+|++|+++.+ .|.+|+++++|++|++++|.+.. ..| .+.++++|++|++++|...+.+|
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSL-------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSC-------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhccccccCCEEECCCCccCcc-------CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 45 889999999999998874 45568899999999999998654 333 46678899999999887655444
Q ss_pred C-c---CCCccEEEecCcCCcc-cCcccCCCCCccEEeeeCCCCCcccccc-cCCCCCCcEEecccccCCccc---chhh
Q 004022 185 Q-I---SGKVTRLYLGQSAIEE-VPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILLGCLNLEHF---PEIL 255 (779)
Q Consensus 185 ~-~---~~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~---p~~l 255 (779)
. . +.+|+.|++++|.+.. +|..++.+++|++|++++|... .+|.. +..+++|++|++++|.+.+.. ....
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchh
Confidence 2 2 3456666777766654 4556666677777777766543 23332 244666777777766655421 1122
Q ss_pred hcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 256 EKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
..+++|+.|++++|.++ .++..+..+++|+.+++++|...+...- . ......+..+++
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~--~---------------~~~~~~~~~l~~ 282 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF--N---------------PSESDVVSELGK 282 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC--C---------------CCTTTCCCCCTT
T ss_pred hhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc--c---------------ccchhhhhhhcc
Confidence 34566677777666655 2333445566777777776654332100 0 001123456788
Q ss_pred cCeeeccCCCCCCccCh----hhccCCCCCcEEEecCCCCccCCccc-CCCCCccEEEEecCCCcc-CC---hhccCCCC
Q 004022 331 LRSLDSSHCKGLESFPR----TFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFES-LP---AIIKQMSQ 401 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~----~~~~~l~~L~~L~Ls~~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~-lp---~~l~~l~~ 401 (779)
|+.|++.++.+...... ......++|+.|++++|.+..+|..+ ..+++|++|++++|.++. +| ..++.+++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999998876543210 01234578999999999999999876 579999999999999984 33 34788999
Q ss_pred CCEEEcCCCCCCCcC-----CCCCCCccEEEEecCCCCCCCCC---CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecC
Q 004022 402 LRFIHLEDFNMLQSL-----PELPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDC 473 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~-----~~~~~~L~~L~l~~c~~l~~lp~---l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c 473 (779)
|+.|++++|.+.+.. ...+++|++|++++|+ +..+|. ...+|++|++++|.+.......+++|++|++++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC
Confidence 999999999986532 3456899999999995 446664 2348999999999977544445679999999997
Q ss_pred cCCcccCCCCCCccEEEEecCCCCCCcccc--ccCCcccchhhhhhhccCCCCCcccccc-cc--cccceeecccccc
Q 004022 474 NMLRSLPELPLCLQLLTVRNCNRLQSLPEI--LLCLQELDASVLEKLSKHSPDLQWAPES-LK--SAAICFEFTNCLK 546 (779)
Q Consensus 474 ~~L~~l~~~~~sL~~L~i~~C~~L~~lp~~--l~~L~~L~~~~~~~l~~~~p~l~~lp~~-l~--~~l~~l~~~~C~~ 546 (779)
.+..++..+++|++|++++| +++.+|.. +.+|+.|+++++ .+..+|.. +. ..++.+.+.+|+-
T Consensus 442 -~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 442 -NLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN--------QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -CCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS--------CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -ChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC--------ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 46666677889999999996 67889864 568899998887 23333322 22 3478888888764
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-35 Score=343.23 Aligned_cols=375 Identities=15% Similarity=0.183 Sum_probs=299.4
Q ss_pred CCceEEEccCCCCC-CCCCCC-CCCCCcEEECCCCCCC------C-----------------------------------
Q 004022 91 KKLRYLHWDTYPLR-TLPSNF-KPKNLVELNLRCSKVE------Q----------------------------------- 127 (779)
Q Consensus 91 ~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~L~~n~i~------~----------------------------------- 127 (779)
.+++.|+++++.++ .+|..+ .+++|++|+|++|.+. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 38999999999996 788777 9999999999999651 0
Q ss_pred -------------------------cc-----CCCCcccCccccCCCCCcEEeccCCCCCCC-----------------C
Q 004022 128 -------------------------PW-----EGEKACVPSSIQNFKYLSALSFKGCQSLRS-----------------F 160 (779)
Q Consensus 128 -------------------------l~-----~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-----------------~ 160 (779)
++ .... .+|.+|+++++|++|+|++|.+.+. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCc-cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00 0011 1788899999999999999986663 6
Q ss_pred CC-CC--CCCCCcEEEecCCcCccccCCcC---CCccEEEecCcC-Cc--ccCcccCCC------CCccEEeeeCCCCCc
Q 004022 161 PS-NL--HFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSA-IE--EVPSSIECL------TDLEVLDLRGCKRLK 225 (779)
Q Consensus 161 p~-~~--~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~n~-i~--~lp~~l~~l------~~L~~L~L~~~~~~~ 225 (779)
|. +. ++++|++|++++|...+.+|..+ .+|+.|++++|. +. .+|..++.+ ++|++|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 76 44 68999999999998888888665 467888888887 76 488877766 88899999888876
Q ss_pred cccc--ccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCC-CCEEeccCCCCCCCCCCCC
Q 004022 226 RIST--SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPG-LEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 226 ~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~-L~~L~L~~~~~~~~lp~~l 302 (779)
.+|. .++.+++|++|++++|.+.+.+| .++.+++|++|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 7787 78888889999998888887888 788888889999998888888888888888 999988887765 444432
Q ss_pred CCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhcc-------CCCCCcEEEecCCCCccCCccc-C
Q 004022 303 GSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL-------GLSAMGLLHISDYAVREIPQEI-A 374 (779)
Q Consensus 303 ~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~Ls~~~l~~~p~~l-~ 374 (779)
.. ..+++|+.|++++|.+.+..|.. +. .+++|+.|++++|.++.+|..+ .
T Consensus 397 ~~---------------------~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 397 DA---------------------KSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CT---------------------TCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred hh---------------------cccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 21 12448999999999998876654 33 5679999999999999988764 5
Q ss_pred CCCCccEEEEecCCCccCChhccC--------CCCCCEEEcCCCCCCCcCCC-----CCCCccEEEEecCCCCCCCCC--
Q 004022 375 YLSSLEILYLSGNNFESLPAIIKQ--------MSQLRFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPV-- 439 (779)
Q Consensus 375 ~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~Ls~n~~~~~~~~-----~~~~L~~L~l~~c~~l~~lp~-- 439 (779)
.+++|++|+|++|.++.+|..+.. +++|+.|++++|.+. .+|. .+++|++|++++|+... +|.
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~ 532 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh
Confidence 689999999999999998864332 239999999999988 5664 35789999999997654 663
Q ss_pred --CCCCccEEEee------CCCCCCCCCCC---CCCccEEeeecCcCCcccCC-CCCCccEEEEecCC
Q 004022 440 --LPFCLESLDLT------GCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE-LPLCLQLLTVRNCN 495 (779)
Q Consensus 440 --l~~~L~~L~ls------~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~-~~~sL~~L~i~~C~ 495 (779)
++ +|++|+++ +|.+.+.+|.. +++|++|++++|.. +.+|. ..++|+.|++++|+
T Consensus 533 ~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 533 LNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp GGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred hcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 33 89999994 57778888864 48899999999876 88886 45799999999975
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=333.60 Aligned_cols=439 Identities=17% Similarity=0.146 Sum_probs=333.0
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+.+.+|.++++|++|++++|.++ .+ +..+..+ .+|++|++++|.++.+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------------------~i~~~~~~~l-~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------------TIEDGAYQSL-SHLSTLILTGNPIQSL 91 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------------------EECTTTTTTC-TTCCEEECTTCCCCEE
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC-------------------ccCcccccCc-hhCCEEeCcCCcCCcc
Confidence 3566777767788889999999999999999884 34 3456666 5999999999999888
Q ss_pred CC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCccc
Q 004022 107 PS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 107 p~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~ 182 (779)
|. .| .+++|++|++++|+++.+ .+..++++++|++|++++|.+.. .+|. +.++++|++|++++|.....
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCS-------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CHhhhcCccccccccccccccccC-------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 74 45 899999999999999874 23368899999999999998665 4565 56699999999999987655
Q ss_pred cCCcC---CCc----cEEEecCcCCcccCcccCCCCCccEEeeeCCCCC-cccccccCCCCC------------------
Q 004022 183 FPQIS---GKV----TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL-KRISTSFCKLRS------------------ 236 (779)
Q Consensus 183 ~~~~~---~~L----~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~------------------ 236 (779)
.+..+ .+| +.|++++|.+..++.......+|+.|++++|... ..++..+..++.
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 45444 345 7889999999888765555558999999887321 111222222222
Q ss_pred --------------CcEEecccc-cCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 237 --------------LVTLILLGC-LNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 237 --------------L~~L~L~~~-~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
++.++++++ ...+..|..+..+++|++|++++|.++.+|..+..+ +|+.|++++|.+. .+|.
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~- 321 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT- 321 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB-
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc-
Confidence 344555555 445566778888999999999999999999988888 9999999998876 5554
Q ss_pred CCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccC-hhhccCCCCCcEEEecCCCCccCCcccCCCCCc
Q 004022 302 IGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP-RTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379 (779)
Q Consensus 302 l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L 379 (779)
..+++|+. .+.++......+. ..+++|++|++++|.+..... ...+..+++|+.|++++|.+..++..+..+++|
T Consensus 322 -~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L 398 (570)
T 2z63_A 322 -LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398 (570)
T ss_dssp -CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred -ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCC
Confidence 35566666 4555544444443 678999999999999876531 123568999999999999999988779999999
Q ss_pred cEEEEecCCCccCC--hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCC-CCCC----CCCCCccEEEe
Q 004022 380 EILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKML-QSLP----VLPFCLESLDL 449 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l-~~lp----~l~~~L~~L~l 449 (779)
++|++++|.++..+ ..+..+++|++|++++|.+.+..|.. +++|++|++++|... ..+| .++ +|++|++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l 477 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDL 477 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEEC
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEEC
Confidence 99999999998664 46889999999999999998877764 478999999999754 2344 333 8999999
Q ss_pred eCCCCCCCCCCC---CCCccEEeeecCcCCcccC-C---CCCCccEEEEecCCCCCCcc
Q 004022 450 TGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLP-E---LPLCLQLLTVRNCNRLQSLP 501 (779)
Q Consensus 450 s~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~-~---~~~sL~~L~i~~C~~L~~lp 501 (779)
++|.+.+..|.. +++|++|++++|. +..++ . .+++|+.|++++|+--...|
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999998887754 3789999999985 44444 2 34789999999976444433
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=334.13 Aligned_cols=460 Identities=16% Similarity=0.175 Sum_probs=353.0
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.+|+++.....++.. + .++++.|++++|.+++ ..+..+..+ ++|++|++++|.++.++
T Consensus 11 ~~~c~~~~l~~ip~~-l--~~~l~~L~Ls~n~l~~------------------~~~~~~~~l-~~L~~L~Ls~n~i~~i~ 68 (570)
T 2z63_A 11 TYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRH------------------LGSYSFFSF-PELQVLDLSRCEIQTIE 68 (570)
T ss_dssp EEECCSSCCSSCCSS-S--CSSCCEEECCSCCCCE------------------ECTTTTTTC-SSCCEEECTTCCCCEEC
T ss_pred EEEeCCCCccccCCC-c--cccccEEEccCCccCc------------------cChhHhhCC-CCceEEECCCCcCCccC
Confidence 466666655566642 2 2579999999999851 223466677 59999999999999887
Q ss_pred CC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCcc-c
Q 004022 108 SN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLI-E 182 (779)
Q Consensus 108 ~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~-~ 182 (779)
.. | ++++|++|+|++|+++.+ .|.+|+++++|++|++++|.+. .++. +.++++|++|++++|.... .
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 69 DGAYQSLSHLSTLILTGNPIQSL-------ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred cccccCchhCCEEeCcCCcCCcc-------CHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceec
Confidence 54 5 899999999999999875 5678999999999999999854 4443 7789999999999998765 4
Q ss_pred cCCc---CCCccEEEecCcCCcccC-cccCCCCCc----cEEeeeCCCCCcccccccCCCCCCcEEecccccCC-cccch
Q 004022 183 FPQI---SGKVTRLYLGQSAIEEVP-SSIECLTDL----EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL-EHFPE 253 (779)
Q Consensus 183 ~~~~---~~~L~~L~L~~n~i~~lp-~~l~~l~~L----~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~ 253 (779)
+|.. +.+|+.|++++|.+..++ ..++.+++| +.|++++|.+.+..|..+... +|+.|++++|... ..++.
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh
Confidence 5654 468999999999998775 467777777 899999998877777766654 8999999887432 22333
Q ss_pred hhhcCccCc--------------------------------EeecCCc-CCC-cCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 254 ILEKMEHLK--------------------------------RIYSDRT-PIT-ELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 254 ~l~~l~~L~--------------------------------~L~L~~n-~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
.+..+++++ .++++++ .+. .+|..+..+++|+.|++++|.+. .+|
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~ 298 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence 444444333 3333333 222 45667888999999999998765 688
Q ss_pred CCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCC
Q 004022 300 DNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYL 376 (779)
Q Consensus 300 ~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l 376 (779)
..+..+ +|+......+.+..+|. ..+++|+.|++++|.+....+. ..+++|+.|++++|.++.. +..+..+
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCcccccccccccc
Confidence 888888 88884444445567776 4789999999999998776654 5789999999999999875 6778899
Q ss_pred CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC----CCCCccEEE
Q 004022 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV----LPFCLESLD 448 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ 448 (779)
++|++|++++|.++.+|..+..+++|+.|++++|.+.+..+. ..++|++|++++|......|. ++ +|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-cCcEEE
Confidence 999999999999998887799999999999999998876552 358899999999976554443 33 899999
Q ss_pred eeCCCCC-CCCCCC---CCCccEEeeecCcCCcccCCC---CCCccEEEEecCCCCCCccc-c---ccCCcccchhhhhh
Q 004022 449 LTGCNML-RSLPEL---PLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQSLPE-I---LLCLQELDASVLEK 517 (779)
Q Consensus 449 ls~n~~l-~~l~~~---~~~L~~L~l~~c~~L~~l~~~---~~sL~~L~i~~C~~L~~lp~-~---l~~L~~L~~~~~~~ 517 (779)
+++|.+. +.+|.. +++|++|++++|......|.. +++|+.|++++| +++.+|. . +.+|+.|++.++ .
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~ 529 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN-P 529 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC-c
Confidence 9999987 456653 489999999998655554543 578999999997 5666663 3 357788888877 5
Q ss_pred hccCCCCCccc
Q 004022 518 LSKHSPDLQWA 528 (779)
Q Consensus 518 l~~~~p~l~~l 528 (779)
+...||...++
T Consensus 530 ~~~~~~~~~~~ 540 (570)
T 2z63_A 530 WDCSCPRIDYL 540 (570)
T ss_dssp BCCCTTTTHHH
T ss_pred ccCCCcchHHH
Confidence 67778776543
No 18
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-34 Score=318.79 Aligned_cols=382 Identities=21% Similarity=0.260 Sum_probs=204.1
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCC-------------cEEeccCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYL-------------SALSFKGCQS 156 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L-------------~~L~Ls~n~~ 156 (779)
.+|++|++++|.++.+|..+ ++++|++|++++|.+... +|.+++++++| ++|++++|.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~-------~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN-------APPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHT-------SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCccccc-------CCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 58999999999999999888 899999999999988743 78888888865 999999988
Q ss_pred CCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 157 LRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 157 l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
++.+|.. .++|++|++++|.... +|....+|+.|++++|.+..++... ++|++|++++|.+.+ +| .++++++
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred cccCCCC--cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 5556663 4789999999887655 7888889999999999998877532 689999999988765 77 4889999
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcc
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAAS 316 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~ 316 (779)
|++|++++|.+.+ +|.. ..+|++|++++|.++.+| .++.+++|+.|++++|.+.+ +|... ++|+......+
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence 9999999987665 5543 358999999999999988 58999999999999987654 44322 12222111122
Q ss_pred cCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc
Q 004022 317 AISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII 396 (779)
Q Consensus 317 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l 396 (779)
.+..+|. ++.+++|++|++++|.+.+... .+++|+.|++++|.+.++|.. +++|++|++++|.++.+|..
T Consensus 226 ~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~- 295 (454)
T 1jl5_A 226 ILEELPE-LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL- 295 (454)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC-
T ss_pred cCCcccc-cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc-
Confidence 2333442 4444455555555544443211 224445555555544444432 24445555555544443321
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML 476 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L 476 (779)
.++|+.|++++|.+.+ ++..+++|++|++++|.. ..+|..+.+|++|++++|.+. .+|..+++|++|++++|. +
T Consensus 296 --~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l-~~lp~~~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~-l 369 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKL-IELPALPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNP-L 369 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-C
T ss_pred --CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcc-ccccccCCcCCEEECCCCccc-cccchhhhccEEECCCCC-C
Confidence 1344455555444433 233334445555544432 224433334555555544443 233333445555554432 2
Q ss_pred cccCCCCCCccEEEEecCCCCCCccccccCCcccchhhh
Q 004022 477 RSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVL 515 (779)
Q Consensus 477 ~~l~~~~~sL~~L~i~~C~~L~~lp~~l~~L~~L~~~~~ 515 (779)
..+|..|.++..|. .+.....+|..+.+|+.|+++++
T Consensus 370 ~~l~~ip~~l~~L~--~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 370 REFPDIPESVEDLR--MNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp SSCCCCCTTCCEEE--CCC--------------------
T ss_pred CcCCCChHHHHhhh--hcccccccccccCcCCEEECCCC
Confidence 22222233333322 12233344444466777777776
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=326.42 Aligned_cols=408 Identities=16% Similarity=0.133 Sum_probs=288.7
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
||++++....+.+.+|.++++|++|++++|.++ ...|+.+..+ .+|++|++++|.++.+|.
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ------------------YLDISVFKFN-QELEYLDLSHNKLVKISC 86 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------------------EEEGGGGTTC-TTCCEEECCSSCCCEEEC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccC------------------CcChHHhhcc-cCCCEEecCCCceeecCc
Confidence 455555555677777888888888888888774 2235566677 488888888888888887
Q ss_pred CCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC--cEEEecCCcC--ccccC
Q 004022 109 NFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCVN--LIEFP 184 (779)
Q Consensus 109 ~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L--~~L~L~~~~~--l~~~~ 184 (779)
. .+++|++|+|++|.++.+ . +|..|+++++|++|++++|.+.. ..+..+++| +.|++++|.. ....|
T Consensus 87 ~-~l~~L~~L~L~~N~l~~~---~---~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 87 H-PTVNLKHLDLSFNAFDAL---P---ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp C-CCCCCSEEECCSSCCSSC---C---CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred c-ccCCccEEeccCCccccc---c---chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccc
Confidence 7 888888888888888752 1 56788888888888888887544 345556777 8888888877 66667
Q ss_pred CcCCCcc----EEEecCcCCc-ccC-cccCCCCCccEEeeeCCC-------CCcccccccCCCCCCcEEecccccCCccc
Q 004022 185 QISGKVT----RLYLGQSAIE-EVP-SSIECLTDLEVLDLRGCK-------RLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 185 ~~~~~L~----~L~L~~n~i~-~lp-~~l~~l~~L~~L~L~~~~-------~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
..+..++ .+++++|.+. .++ ..+.++++|+.|++++|. ..+.+| .+..+++|+.|++++|...+..
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHH
Confidence 7776654 5566666653 233 356678888888888876 445555 5777888888888887765433
Q ss_pred chhhh---cCccCcEeecCCcCCC-cCCccC-----CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 252 PEILE---KMEHLKRIYSDRTPIT-ELPSSF-----ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 252 p~~l~---~l~~L~~L~L~~n~i~-~lp~~l-----~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+..+. ..++|++|++++|.++ .+|..+ +.+++|+.+++++|.+ .+|.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~---------------------- 292 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ---------------------- 292 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT----------------------
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch----------------------
Confidence 22221 2458888888888888 788877 7888888888888765 3331
Q ss_pred ccccCc---cccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCcc---CChh
Q 004022 323 SSVALS---NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFES---LPAI 395 (779)
Q Consensus 323 ~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~ 395 (779)
..+..+ .+|+.|++++|.+..... ...+++|++|++++|.+++ +|..+..+++|++|++++|+++. +|..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 112222 568999999998765431 2578899999999999988 78888999999999999999985 4567
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCC-CCCCCccEEEeeCCCCCCCCCC---CCCCccE
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLP-VLPFCLESLDLTGCNMLRSLPE---LPLCLQY 467 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp-~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~ 467 (779)
+..+++|++|++++|.+.+.+|. .+++|++|++++|.....+| .++.+|++|++++|.+. .+|. .+++|++
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 88999999999999998875553 24677777777776554444 23346777777777665 4443 2366677
Q ss_pred EeeecCcCCcccCCC----CCCccEEEEecC
Q 004022 468 LNLEDCNMLRSLPEL----PLCLQLLTVRNC 494 (779)
Q Consensus 468 L~l~~c~~L~~l~~~----~~sL~~L~i~~C 494 (779)
|++++| .++.+|.. +++|+.|+++++
T Consensus 449 L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 449 LNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 777665 34455532 235555555554
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-33 Score=313.55 Aligned_cols=406 Identities=19% Similarity=0.229 Sum_probs=203.5
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCC-CCCCCC-CCCC---
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLPSNF-KPKN--- 114 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~-~lp~~~-~l~~--- 114 (779)
.|+.+. .++||.|++++|.+. .+|..+..+ ++|++|++++|.+. .+|..+ .+.+
T Consensus 4 ~p~~~~-~~~L~~L~l~~n~l~-------------------~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 62 (454)
T 1jl5_A 4 NPRNVS-NTFLQEPLRHSSNLT-------------------EMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAV 62 (454)
T ss_dssp ---------------------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHH
T ss_pred cccccc-cccchhhhcccCchh-------------------hCChhHhcc-cchhhhhccCCcccccCCcccccchhcch
Confidence 344443 466777777777663 455555555 35555555555543 455444 3333
Q ss_pred ----------CcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC
Q 004022 115 ----------LVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 115 ----------L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
|++|++++|.++. +|. -.++|++|++++|.+.+ +|.. +++|++|++++|... .++
T Consensus 63 l~l~~c~~~~l~~L~l~~~~l~~--------lp~---~~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~ 127 (454)
T 1jl5_A 63 SRLRDCLDRQAHELELNNLGLSS--------LPE---LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALS 127 (454)
T ss_dssp HHHHHHHHHTCSEEECTTSCCSC--------CCS---CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCC
T ss_pred hhhhhhhccCCCEEEecCCcccc--------CCC---CcCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccC-ccc
Confidence 2555555555554 222 12455555555555332 4432 255555555555332 333
Q ss_pred CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEe
Q 004022 185 QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264 (779)
Q Consensus 185 ~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 264 (779)
....+|++|++++|.+..+| .++++++|++|++++|++.+ +|.. ..+|++|++++|.+.+ +| .++.+++|++|
T Consensus 128 ~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 128 DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 33345666666666665555 35566666666666655433 3432 2356666666655444 34 35556666666
Q ss_pred ecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 265 YSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 265 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
++++|.++.+|... ++|+.|++++|.+. .+|. ++.+++|+......+.+..+|.. +++|+.|++++|.+.+.
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC
T ss_pred ECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc
Confidence 66666665555432 35666666665444 4442 55555555522223334445542 47899999999988763
Q ss_pred cChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCcc
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLK 424 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~ 424 (779)
+. .+++|+.|++++|.++++|.. .++|++|++++|.++.++.. .++|+.|++++|.+.+ +|..+++|+
T Consensus 273 -~~----~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~ 340 (454)
T 1jl5_A 273 -PE----LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLE 340 (454)
T ss_dssp -CC----CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCC
T ss_pred -Cc----ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCC
Confidence 32 347899999999998886532 36899999999998876531 2589999999988776 777788999
Q ss_pred EEEEecCCCCCCCCCCCCCccEEEeeCCCCCC--CCCCCCCCccEEeeecCcCCcccCCCCCCccEEEEecCCCCCCccc
Q 004022 425 YLHLIDCKMLQSLPVLPFCLESLDLTGCNMLR--SLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPE 502 (779)
Q Consensus 425 ~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~--~l~~~~~~L~~L~l~~c~~L~~l~~~~~sL~~L~i~~C~~L~~lp~ 502 (779)
+|++++|. ++.+|..+.+|++|++++|++.+ .+| ..+..|. .+.....+|..+++|+.|++++++ ++.+|.
T Consensus 341 ~L~L~~N~-l~~lp~~l~~L~~L~L~~N~l~~l~~ip---~~l~~L~--~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~ 413 (454)
T 1jl5_A 341 RLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPDIP---ESVEDLR--MNSHLAEVPELPQNLKQLHVETNP-LREFPD 413 (454)
T ss_dssp EEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC---TTCCEEE--CCC----------------------------
T ss_pred EEECCCCc-cccccchhhhccEEECCCCCCCcCCCCh---HHHHhhh--hcccccccccccCcCCEEECCCCc-CCcccc
Confidence 99999885 45677766789999999998877 555 3444443 345566677777888888888854 443333
Q ss_pred cccCCcccchhhh
Q 004022 503 ILLCLQELDASVL 515 (779)
Q Consensus 503 ~l~~L~~L~~~~~ 515 (779)
...+++.|++..+
T Consensus 414 iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 414 IPESVEDLRMNSE 426 (454)
T ss_dssp -------------
T ss_pred chhhHhheeCcCc
Confidence 3334555555544
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.2e-33 Score=329.54 Aligned_cols=325 Identities=18% Similarity=0.191 Sum_probs=260.4
Q ss_pred cCCcC---CCccEEEecCcCCcc------------------cCcccC--CCCCccEEeeeCCCCCcccccccCCCCCCcE
Q 004022 183 FPQIS---GKVTRLYLGQSAIEE------------------VPSSIE--CLTDLEVLDLRGCKRLKRISTSFCKLRSLVT 239 (779)
Q Consensus 183 ~~~~~---~~L~~L~L~~n~i~~------------------lp~~l~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 239 (779)
+|..+ .+|+.|+|++|.+.. +|..++ ++++|++|+|++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66543 578888888888877 999988 9999999999999999999999999999999
Q ss_pred Eeccccc-CCc-ccchhhhcCc-------cCcEeecCCcCCCcCCc--cCCCCCCCCEEeccCCCCCCCCCCCCCCchhH
Q 004022 240 LILLGCL-NLE-HFPEILEKME-------HLKRIYSDRTPITELPS--SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308 (779)
Q Consensus 240 L~L~~~~-~~~-~~p~~l~~l~-------~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 308 (779)
|+|++|. +.+ .+|..++.++ +|++|++++|.++.+|. .++.+++|+.|++++|.+. .+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999998 666 7888877776 99999999999999999 8999999999999999887 788 88999999
Q ss_pred HHHHhhcccCCcCCccccCccc-cCeeeccCCCCCCccChhhccCC--CCCcEEEecCCCCccC-C---cccC--CCCCc
Q 004022 309 YYILAAASAISQLPSSVALSNM-LRSLDSSHCKGLESFPRTFLLGL--SAMGLLHISDYAVREI-P---QEIA--YLSSL 379 (779)
Q Consensus 309 ~~~~~~~~~~~~lp~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~Ls~~~l~~~-p---~~l~--~l~~L 379 (779)
+.+....+.+..+|..+..+++ |+.|++++|.+.. +|.. +... ++|+.|++++|.+... | ..+. .+++|
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 9944444555689988999999 9999999999884 4432 3333 4599999999998773 2 2233 34589
Q ss_pred cEEEEecCCCccCChhc-cCCCCCCEEEcCCCCCCCcCCC-CCC----------CccEEEEecCCCCCCCCC-C----CC
Q 004022 380 EILYLSGNNFESLPAII-KQMSQLRFIHLEDFNMLQSLPE-LPL----------CLKYLHLIDCKMLQSLPV-L----PF 442 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~-~~~----------~L~~L~l~~c~~l~~lp~-l----~~ 442 (779)
+.|+|++|.++.+|..+ ..+++|+.|+|++|.+. .+|. .+. +|+.|++++|.. ..+|. + ..
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCC
Confidence 99999999999999765 58999999999999887 5554 222 899999999954 46663 1 13
Q ss_pred CccEEEeeCCCCCCCCCC---CCCCccEEeeec------CcCCcccCCC---CCCccEEEEecCCCCCCccccc-cCCcc
Q 004022 443 CLESLDLTGCNMLRSLPE---LPLCLQYLNLED------CNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEIL-LCLQE 509 (779)
Q Consensus 443 ~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~------c~~L~~l~~~---~~sL~~L~i~~C~~L~~lp~~l-~~L~~ 509 (779)
+|+.|++++|.+.+ +|. .+++|+.|++++ |.....+|.. +++|+.|++++|. ++.+|..+ .+|+.
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~ 831 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYI 831 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCE
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCE
Confidence 89999999999887 564 348899999987 4444556643 5689999999875 48888754 47888
Q ss_pred cchhhh
Q 004022 510 LDASVL 515 (779)
Q Consensus 510 L~~~~~ 515 (779)
|++++|
T Consensus 832 LdLs~N 837 (876)
T 4ecn_A 832 LDIADN 837 (876)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 888777
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=320.53 Aligned_cols=404 Identities=14% Similarity=0.103 Sum_probs=220.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|..+. ++|++|++++|.++.++. .| .+++|++|+|++|+++.+ .|.+|+++++|++|+|++|.+.
T Consensus 14 ~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~- 82 (520)
T 2z7x_B 14 HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-------DISVFKFNQELEYLDLSHNKLV- 82 (520)
T ss_dssp SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-------EGGGGTTCTTCCEEECCSSCCC-
T ss_pred ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-------ChHHhhcccCCCEEecCCCcee-
Confidence 4554433 466777777777666653 33 666677777777766654 4556666777777777766633
Q ss_pred CCCCCCCCCCCcEEEecCCcCcc-ccCCc---CCCccEEEecCcCCcccCcccCCCCCc--cEEeeeCCCC--Ccccccc
Q 004022 159 SFPSNLHFVCPVTINFSYCVNLI-EFPQI---SGKVTRLYLGQSAIEEVPSSIECLTDL--EVLDLRGCKR--LKRISTS 230 (779)
Q Consensus 159 ~~p~~~~l~~L~~L~L~~~~~l~-~~~~~---~~~L~~L~L~~n~i~~lp~~l~~l~~L--~~L~L~~~~~--~~~lp~~ 230 (779)
.+|.. .+++|++|++++|.... .+|.. +.+|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..
T Consensus 83 ~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 83 KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 55555 66666666666666543 23332 3456666666666654 234445555 6666666665 4444444
Q ss_pred cCCCC-CCcEEecccccCCcccc-hhhhcCccCcEeecCCcC-------CCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 231 FCKLR-SLVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRTP-------ITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 231 l~~l~-~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~-------i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
+..+. ....+++++|...+.++ ..+..+++|+.|++++|. +......++.+++|+.|++++|.+.+..+..
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 44333 12233334443333222 223445555555555554 2211123455555555555554432211100
Q ss_pred CC---CchhHHH-HHhhcccCCcCCccc-----cCccccCeeeccCCCCCCccChhhccCC---CCCcEEEecCCCCccC
Q 004022 302 IG---SLEYLYY-ILAAASAISQLPSSV-----ALSNMLRSLDSSHCKGLESFPRTFLLGL---SAMGLLHISDYAVREI 369 (779)
Q Consensus 302 l~---~l~~L~~-~~~~~~~~~~lp~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~Ls~~~l~~~ 369 (779)
+. ..++|+. .+.++...+.+|..+ +.+++|+.+++++|.+ .+|...+..+ .+|+.|++++|.+...
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 00 0011222 122222222444444 5666777777777766 2331111111 4577777777776654
Q ss_pred CcccCCCCCccEEEEecCCCcc-CChhccCCCCCCEEEcCCCCCCC--cCC---CCCCCccEEEEecCCCCCCCCC----
Q 004022 370 PQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQ--SLP---ELPLCLKYLHLIDCKMLQSLPV---- 439 (779)
Q Consensus 370 p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~~~~--~~~---~~~~~L~~L~l~~c~~l~~lp~---- 439 (779)
+. ...+++|++|++++|.++. +|..+..+++|++|++++|.+.+ .+| ..+++|++|++++|.....+|.
T Consensus 318 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 318 LC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred cc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 31 2566777777777777774 56667777777777777777765 333 2446777777777765443442
Q ss_pred CCCCccEEEeeCCCCCCCCCCCC-CCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCcccc
Q 004022 440 LPFCLESLDLTGCNMLRSLPELP-LCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEI 503 (779)
Q Consensus 440 l~~~L~~L~ls~n~~l~~l~~~~-~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~ 503 (779)
...+|++|++++|.+.+.+|..+ ++|++|++++| .++.+|. .+++|+.|++++| +++.+|..
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 11367777777777766655544 57777777776 3445553 2456777777774 45566654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.9e-31 Score=307.13 Aligned_cols=363 Identities=16% Similarity=0.100 Sum_probs=190.9
Q ss_pred CceEEEccCCCCCCCC-CCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCC
Q 004022 92 KLRYLHWDTYPLRTLP-SNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFV 167 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp-~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~ 167 (779)
+|++|++++|.++.++ ..| .+++|++|+|++|+|+. +|.. .+++|++|+|++|.+.. .+| .+.+++
T Consensus 77 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--------ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--------cCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 5555555555555442 223 45555555555555544 3333 45555555555554332 122 233455
Q ss_pred CCcEEEecCCcCccccCCcCCCc--cEEEecCcCC--c-ccCcccCCCC--CccEEeeeCCCCCccccc-ccCCCCCCcE
Q 004022 168 CPVTINFSYCVNLIEFPQISGKV--TRLYLGQSAI--E-EVPSSIECLT--DLEVLDLRGCKRLKRIST-SFCKLRSLVT 239 (779)
Q Consensus 168 ~L~~L~L~~~~~l~~~~~~~~~L--~~L~L~~n~i--~-~lp~~l~~l~--~L~~L~L~~~~~~~~lp~-~l~~l~~L~~ 239 (779)
+|++|++++|.........+.+| +.|++++|.+ . ..|..+..+. .| .+++++|.+.+.++. .+..+++|+.
T Consensus 147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEE
Confidence 55555555554433222222333 5555555544 1 2233333222 11 233344443332222 2334556666
Q ss_pred EecccccC----CcccchhhhcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCC-----CCc
Q 004022 240 LILLGCLN----LEHFPEILEKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNI-----GSL 305 (779)
Q Consensus 240 L~L~~~~~----~~~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l-----~~l 305 (779)
|++++|.. .......+..+++|+.|++.++.+. .++..+ ..++|++|++++|.+.+.+|..+ .++
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccc
Confidence 66665431 1122233455556555555554443 222221 12367777777776666666655 444
Q ss_pred hhHHH-HHhhcccCCcCCc-ccc---CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCc
Q 004022 306 EYLYY-ILAAASAISQLPS-SVA---LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSL 379 (779)
Q Consensus 306 ~~L~~-~~~~~~~~~~lp~-~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L 379 (779)
+.|+. ....+ .+ .+|. .+. ...+|+.|++++|.+..... ...+++|++|++++|.+++ +|..+..+++|
T Consensus 305 ~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 379 (562)
T 3a79_B 305 KSLMIEHVKNQ-VF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379 (562)
T ss_dssp CEEEEEEEEEC-CC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred hheehhhcccc-ee-ecChhhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCC
Confidence 44443 22221 11 3331 111 12568889998888754321 2578889999999998888 77788888999
Q ss_pred cEEEEecCCCccCC---hhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC-CCCCccEEEeeC
Q 004022 380 EILYLSGNNFESLP---AIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTG 451 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~ 451 (779)
++|++++|+++.++ ..+..+++|+.|++++|.+.+.+|. .+++|++|++++|.....+|. ++.+|++|++++
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~ 459 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCS
T ss_pred CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCC
Confidence 99999999888665 4578889999999998888775554 235566666666654333332 223555555555
Q ss_pred CCCCCCCCC---CCCCccEEeeec
Q 004022 452 CNMLRSLPE---LPLCLQYLNLED 472 (779)
Q Consensus 452 n~~l~~l~~---~~~~L~~L~l~~ 472 (779)
|.+. .+|. .+++|++|++++
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCS
T ss_pred CcCc-ccChhhcCCCCCCEEECCC
Confidence 5444 2322 124455555544
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.4e-30 Score=291.88 Aligned_cols=325 Identities=16% Similarity=0.099 Sum_probs=155.6
Q ss_pred CCCCCCCCCCceEEEccCCCCC-CCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC
Q 004022 83 PNGLDYLPKKLRYLHWDTYPLR-TLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS 159 (779)
Q Consensus 83 ~~~l~~l~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~ 159 (779)
|..+..+ ++|++|++++|.+. .++. .| .+++|++|+|++|+++.+ .|..|+++++|++|+|++|.+.+.
T Consensus 47 ~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 47 ETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-------ETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp TTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-------CTTTTTTCTTCCEEECTTSCCBTH
T ss_pred hhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-------ChhhccCcccCCEEeCCCCCCCcc
Confidence 4444455 35666666666553 3432 23 556666666666665543 455555666666666666654432
Q ss_pred CCC---CCCCCCCcEEEecCCcCccccCC----cCCCccEEEecCcCCcccC-cccCCC--CCccEEeeeCCCCCccccc
Q 004022 160 FPS---NLHFVCPVTINFSYCVNLIEFPQ----ISGKVTRLYLGQSAIEEVP-SSIECL--TDLEVLDLRGCKRLKRIST 229 (779)
Q Consensus 160 ~p~---~~~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~n~i~~lp-~~l~~l--~~L~~L~L~~~~~~~~lp~ 229 (779)
.+. +..+++|++|++++|......|. .+.+|+.|++++|.+..++ ..+..+ .+|+.|++++|.+....+.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 221 44455666666666554443332 2345555666665554432 233333 4556666665554432221
Q ss_pred c--------cCCCCCCcEEecccccCCcccchhhhcC---ccCcEeecCCcCCCcCCc-----------cCC--CCCCCC
Q 004022 230 S--------FCKLRSLVTLILLGCLNLEHFPEILEKM---EHLKRIYSDRTPITELPS-----------SFE--NLPGLE 285 (779)
Q Consensus 230 ~--------l~~l~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~L~~n~i~~lp~-----------~l~--~l~~L~ 285 (779)
. +..+++|++|++++|.+.+..|..+... ++|+.|++++|....... .+. ..++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 1 2234556666666665555555544433 555666665554331110 011 124566
Q ss_pred EEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC
Q 004022 286 VLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364 (779)
Q Consensus 286 ~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~ 364 (779)
.|++++|.+.+..|..+..+++|+. .+.++......|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYN 357 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTTCCEEECCSS
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH-hcCcccCCEEECCCC
Confidence 6666665554444433332222222 11111111112233444455555555555554333222 345555555555555
Q ss_pred CCccC-CcccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCCCcC
Q 004022 365 AVREI-PQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSL 416 (779)
Q Consensus 365 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~~~ 416 (779)
.++.+ |..+..+++|++|+|++|+++.+|. .+..+++|+.|++++|++....
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 55552 4445555555555555555555443 2345555555555555544433
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.1e-31 Score=302.32 Aligned_cols=376 Identities=15% Similarity=0.105 Sum_probs=203.5
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
||++++....+.+.+|.++++|++|++++|.++ .+ |+.+..+ ++|++|++++|.++.+|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-------------------SLDFHVFLFN-QDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-------------------EECTTTTTTC-TTCCEEECTTSCCCEEC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCC-------------------cCCHHHhCCC-CCCCEEECCCCcCCccC
Confidence 344444444555555666666666666666553 34 5667777 59999999999999999
Q ss_pred CCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC--cEEEecCCcC--cccc
Q 004022 108 SNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCVN--LIEF 183 (779)
Q Consensus 108 ~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L--~~L~L~~~~~--l~~~ 183 (779)
.. .+++|++|+|++|+++.+. +|..|+++++|++|++++|.+.. ..+..+++| +.|++++|.. ....
T Consensus 117 ~~-~l~~L~~L~Ls~N~l~~l~------~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 117 CC-PMASLRHLDLSFNDFDVLP------VCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp SC-CCTTCSEEECCSSCCSBCC------CCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred cc-ccccCCEEECCCCCccccC------chHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccC
Confidence 88 9999999999999998731 45789999999999999998654 244556666 9999999987 4444
Q ss_pred CCcCC-----------------------------CccEEEecCcCC-----cccCcccCCCC------------------
Q 004022 184 PQISG-----------------------------KVTRLYLGQSAI-----EEVPSSIECLT------------------ 211 (779)
Q Consensus 184 ~~~~~-----------------------------~L~~L~L~~n~i-----~~lp~~l~~l~------------------ 211 (779)
|..+. +|+.|++++|.. ......+..++
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 44433 334444444420 00111112222
Q ss_pred ---------CccEEeeeCCCCCccccccc-----CCCCCCcEEecccccCCcccc-hhhhc---CccCcEeecCCcCCCc
Q 004022 212 ---------DLEVLDLRGCKRLKRISTSF-----CKLRSLVTLILLGCLNLEHFP-EILEK---MEHLKRIYSDRTPITE 273 (779)
Q Consensus 212 ---------~L~~L~L~~~~~~~~lp~~l-----~~l~~L~~L~L~~~~~~~~~p-~~l~~---l~~L~~L~L~~n~i~~ 273 (779)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+.. .+| +.+.. ..+|++|++++|.+..
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence 44444444444444444433 3333333333333322 222 11111 1346666666666554
Q ss_pred CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcC---CccccCccccCeeeccCCCCCCccChhhc
Q 004022 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL---PSSVALSNMLRSLDSSHCKGLESFPRTFL 350 (779)
Q Consensus 274 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~l---p~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 350 (779)
++. ...+++|+.|++++|.+.+..|..+..+++|+.+....+.+..+ |..+..+++|+.|++++|.+.+..+...+
T Consensus 346 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 346 MVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred ccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 331 24566777777777766665555555544444422222222222 22344444555555555544443333333
Q ss_pred cCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEe
Q 004022 351 LGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLI 429 (779)
Q Consensus 351 ~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~ 429 (779)
..+++|+.|++++|.+++ +|..+. ++|++|++++|+++.+|..+..+++|+.|++++|.+.+ +|..
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~---------- 491 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDG---------- 491 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTT----------
T ss_pred cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHH----------
Confidence 444455555555554433 222221 34555555555555454444444555554444444331 2211
Q ss_pred cCCCCCCCCCCCCCccEEEeeCCCCCC
Q 004022 430 DCKMLQSLPVLPFCLESLDLTGCNMLR 456 (779)
Q Consensus 430 ~c~~l~~lp~l~~~L~~L~ls~n~~l~ 456 (779)
.+..++ +|++|++++|++..
T Consensus 492 ------~~~~l~-~L~~L~l~~N~~~c 511 (562)
T 3a79_B 492 ------VFDRLT-SLQYIWLHDNPWDC 511 (562)
T ss_dssp ------STTTCT-TCCCEECCSCCBCC
T ss_pred ------HHhcCC-CCCEEEecCCCcCC
Confidence 011122 77888888887654
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4.6e-30 Score=288.41 Aligned_cols=297 Identities=15% Similarity=0.175 Sum_probs=184.4
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.++....+++|++|++++|.++.+ +. +.++++|++|++++|. ...++.+.++++|+.
T Consensus 91 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--------~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 91 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--------DP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--------hH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 5566666665555555422555566666655555542 22 4555556666665555 233444555555555
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
|+++++.........+.+|+.|++++|.+..++ .+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 555422111111122344555555555555443 24455555555555555443333 44455555555555544331
Q ss_pred chhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcccc
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNML 331 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L 331 (779)
..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++. +..+++|
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l------------------------~~~~~-~~~l~~L 289 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI------------------------SNISP-LAGLTAL 289 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC------------------------CCCGG-GTTCTTC
T ss_pred -hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc------------------------Ccccc-ccCCCcc
Confidence 234455555555555555555443 45555555555555443 33333 6678899
Q ss_pred CeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCC
Q 004022 332 RSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 332 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 411 (779)
+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+
T Consensus 290 ~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc
Confidence 999999999887655 5688999999999999988655 778899999999999999875 68899999999999999
Q ss_pred CCCcCCC-CCCCccEEEEecCCCC
Q 004022 412 MLQSLPE-LPLCLKYLHLIDCKML 434 (779)
Q Consensus 412 ~~~~~~~-~~~~L~~L~l~~c~~l 434 (779)
+.+..|- .+++|+.|++++|+..
T Consensus 365 l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 365 ISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCBCGGGTTCTTCCEEECCCEEEE
T ss_pred cCccchhhcCCCCCEEeccCCccc
Confidence 8877662 4588999999998643
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.3e-30 Score=288.95 Aligned_cols=310 Identities=15% Similarity=0.101 Sum_probs=224.3
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEE
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELN 119 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 119 (779)
.+..++++++|++|++++|.++ .+| ++..+ ++|++|++++|.++.+| ...+++|++|+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~ 91 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSIT-------------------DMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLA 91 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCC-------------------CCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEE
T ss_pred cccChhHcCCCCEEEccCCCcc-------------------cCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEE
Confidence 3446889999999999999885 334 46666 48999999999988886 33788899999
Q ss_pred CCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCc-
Q 004022 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQS- 198 (779)
Q Consensus 120 L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n- 198 (779)
+++|.++. ++ ++++++|++|++++|.+. .+| +..+++|++|++++|.....-.....+|+.|++++|
T Consensus 92 Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~-~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 92 CDSNKLTN--------LD--VTPLTKLTYLNCDTNKLT-KLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CCSSCCSC--------CC--CTTCTTCCEEECCSSCCS-CCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS
T ss_pred CcCCCCce--------ee--cCCCCcCCEEECCCCcCC-eec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC
Confidence 99998886 33 678889999999998754 455 777889999999988766533345567888888888
Q ss_pred CCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccC
Q 004022 199 AIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSF 278 (779)
Q Consensus 199 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l 278 (779)
.++.+ .++.+++|++|++++|.+.+ +| +..+++|+.|++++|.+.+. .++.+++|++|++++|.++.+| +
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~ 229 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--V 229 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--C
T ss_pred ccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--c
Confidence 45555 47788889999999887655 44 77788899999988877664 3778888999999999988887 7
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcE
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL 358 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 358 (779)
+.+++|+.|++++|++.+..+..+.+++.|. ....+|+.|++++|...+.++ ...+++|+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~----------------l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~ 290 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLH----------------CIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKE 290 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCCTTCTTCCEEE----------------CTTCCCSCCCCTTCTTCCEEE---CTTCTTCCC
T ss_pred cccCCCCEEEeeCCcCCCcCHHHCCCCCEEe----------------ccCCCCCEEECCCCccCCccc---ccccccCCE
Confidence 8888999999998887765433333332111 011345666666666555544 235666666
Q ss_pred EEecCCCCcc-CCc--------ccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 359 LHISDYAVRE-IPQ--------EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 359 L~Ls~~~l~~-~p~--------~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
|++++|...+ +|. .+..+++|++|++++|+++.++ ++.+++|+.|++++|++.+
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence 6666665332 221 1445577888888888887764 7777888887777777654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.2e-29 Score=285.17 Aligned_cols=341 Identities=17% Similarity=0.229 Sum_probs=279.9
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
..+++|+.|+++++.++ .+| ++..+ ++|++|++++|.++.+|....+++|++|++++|.
T Consensus 43 ~~l~~l~~L~l~~~~i~-------------------~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-------------------SID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 101 (466)
T ss_dssp HHHHTCCEEECCSSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred hHhccccEEecCCCCCc-------------------cCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCc
Confidence 45778999999999874 344 35566 5999999999999999883399999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC--CcCCCccEEEecCcCCcc
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP--QISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~L~~n~i~~ 202 (779)
++. ++. ++++++|++|++++|. .+.++.+.++++|++|++++|.... ++ ..+.+|+.|+++ +.+..
T Consensus 102 l~~--------~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 102 IAD--------ITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCC--------CGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCC
T ss_pred ccc--------Chh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccC
Confidence 987 344 8899999999999998 4556668889999999999997543 33 345688999996 45555
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
++. ++++++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..| ++.+++|++|++++|.++.++ .+..++
T Consensus 170 ~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~ 243 (466)
T 1o6v_A 170 LKP-LANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLT 243 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred chh-hccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCC
Confidence 543 8889999999999988554 33 37889999999999988776655 778999999999999999875 478899
Q ss_pred CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEec
Q 004022 283 GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHIS 362 (779)
Q Consensus 283 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls 362 (779)
+|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~------------------------~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 244 NLTDLDLANNQISNL------------------------AP-LSGLTKLTELKLGANQISNISP---LAGLTALTNLELN 295 (466)
T ss_dssp TCSEEECCSSCCCCC------------------------GG-GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECC
T ss_pred CCCEEECCCCccccc------------------------hh-hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcC
Confidence 999999999875432 11 5678899999999999887655 5689999999999
Q ss_pred CCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC--CCCCccEEEEecCCCCCCCC--
Q 004022 363 DYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE--LPLCLKYLHLIDCKMLQSLP-- 438 (779)
Q Consensus 363 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~l~~c~~l~~lp-- 438 (779)
+|.+.+++. +..+++|+.|++++|+++.++. +..+++|+.|++++|++.+. +. .+++|+.|++++|+.....|
T Consensus 296 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~ 372 (466)
T 1o6v_A 296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLA 372 (466)
T ss_dssp SSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhh
Confidence 999999765 7889999999999999998776 88999999999999988764 33 45899999999997654444
Q ss_pred CCCCCccEEEeeCCCCCC
Q 004022 439 VLPFCLESLDLTGCNMLR 456 (779)
Q Consensus 439 ~l~~~L~~L~ls~n~~l~ 456 (779)
.++ +|++|++++|++.+
T Consensus 373 ~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp TCT-TCCEEECCCEEEEC
T ss_pred cCC-CCCEEeccCCcccC
Confidence 233 89999999998765
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.7e-30 Score=298.74 Aligned_cols=432 Identities=17% Similarity=0.133 Sum_probs=266.9
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCC-CCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN-GLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+++.+|.++++||+|+|++|.|+ .++. .+..+ ++|++|+|++|+++.+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-------------------~i~~~~f~~L-~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------------TIEDGAYQSL-SHLSTLILTGNPIQSL 115 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECTTTTTTC-TTCCEEECTTCCCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-------------------CcChhHhcCC-CCCCEEEccCCcCCCC
Confidence 4677777777788888888888888888888874 4544 45566 5899999999999988
Q ss_pred CCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCccc
Q 004022 107 PSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 107 p~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~ 182 (779)
|.. | ++++|++|+|++|+++.+ .+..|+++++|++|+|++|.+.. ..|. +..+++|++|++++|.....
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCCC-------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 864 5 789999999999998875 44568889999999999988654 3455 44588999999998876655
Q ss_pred cCCcCC-------CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcc-cccccCC---------------------
Q 004022 183 FPQISG-------KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR-ISTSFCK--------------------- 233 (779)
Q Consensus 183 ~~~~~~-------~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~--------------------- 233 (779)
.+..+. ....++++.|.+..++........++.+++.++..... .+..+..
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 444432 23467788888877776655555566666665532211 1111111
Q ss_pred ------------------------------------CCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc
Q 004022 234 ------------------------------------LRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 234 ------------------------------------l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~ 277 (779)
+.+++.+.+.++.... ...+.....|+.|++.++.+..++.
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCC-
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCc-
Confidence 2223333333322211 1124445677888888877766554
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhccc--CCcCCccccCccccCeeeccCCCCCCccChhhccCCC
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASA--ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLS 354 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~--~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 354 (779)
..++.|+.+++..+..... .....+++|+. .+..+.. ....+.....+.+|+.+++..+........ +..++
T Consensus 346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~--~~~l~ 420 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLE 420 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC--CTTCT
T ss_pred -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc--ccccc
Confidence 2355666666666544322 12234444444 2222211 122344455666777777777665443332 34667
Q ss_pred CCcEEEecCCCCccC--CcccCCCCCccEEEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCc-CCC---CCCCccEEE
Q 004022 355 AMGLLHISDYAVREI--PQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQS-LPE---LPLCLKYLH 427 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~-~~~---~~~~L~~L~ 427 (779)
+|+.++++.++.... +..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|. .+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 777777777665552 23456667777777777777643 35566677777777777765443 333 235677777
Q ss_pred EecCCCCCCCC----CCCCCccEEEeeCCCCCCCCCC---CCCCccEEeeecCcCCcccCC----CCCCccEEEEecCC
Q 004022 428 LIDCKMLQSLP----VLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPE----LPLCLQLLTVRNCN 495 (779)
Q Consensus 428 l~~c~~l~~lp----~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~----~~~sL~~L~i~~C~ 495 (779)
+++|+.....| .++ +|++|++++|++.+..+. .+++|++|++++|.-....|+ .+++|+.|++++++
T Consensus 501 Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 77775332222 233 677777777777665554 236777888877654433333 23578888887754
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=6.7e-30 Score=286.42 Aligned_cols=351 Identities=15% Similarity=0.111 Sum_probs=253.9
Q ss_pred CCCCceEEEccCCCCCCC-CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCC
Q 004022 89 LPKKLRYLHWDTYPLRTL-PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLH 165 (779)
Q Consensus 89 l~~~L~~L~l~~n~l~~l-p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~ 165 (779)
++++|++|++++|.++.+ |..+ .+++|++|+|++|.+... . .+..|.++++|++|+|++|.+....|. +.+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---I---RNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---E---CTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---E---CcccccccccCCEEeCCCCccCccChhhccC
Confidence 446888999998888877 4455 888899999988887531 0 355688888899999988886665554 566
Q ss_pred CCCCcEEEecCCcCccccC-----CcCCCccEEEecCcCCccc-Ccc-cCCCCCccEEeeeCCCCCcccccccCCC--CC
Q 004022 166 FVCPVTINFSYCVNLIEFP-----QISGKVTRLYLGQSAIEEV-PSS-IECLTDLEVLDLRGCKRLKRISTSFCKL--RS 236 (779)
Q Consensus 166 l~~L~~L~L~~~~~l~~~~-----~~~~~L~~L~L~~n~i~~l-p~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l--~~ 236 (779)
+++|++|++++|......+ ..+.+|+.|++++|.+..+ |.. ++++++|++|++++|.+.+..+..+..+ .+
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 8888888888887764332 2345778888888888766 333 6778888888888887777666666555 57
Q ss_pred CcEEecccccCCcccchh--------hhcCccCcEeecCCcCCCc-CCccCC---CCCCCCEEeccCCCCCCCCCCCCCC
Q 004022 237 LVTLILLGCLNLEHFPEI--------LEKMEHLKRIYSDRTPITE-LPSSFE---NLPGLEVLFVEDCSKLDNLPDNIGS 304 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~--------l~~l~~L~~L~L~~n~i~~-lp~~l~---~l~~L~~L~L~~~~~~~~lp~~l~~ 304 (779)
|+.|++++|......+.. +..+++|++|++++|.++. .|..+. ..++|+.|++++|...+.... ...
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhh
Confidence 778888877765543322 2345678888888887763 333332 237788888877765443211 000
Q ss_pred chhHHHHHhhcccCCcCCcccc--CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-CcccCCCCCccE
Q 004022 305 LEYLYYILAAASAISQLPSSVA--LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEI 381 (779)
Q Consensus 305 l~~L~~~~~~~~~~~~lp~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p~~l~~l~~L~~ 381 (779)
+ ....+..+. ..++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.++ |..+..+++|++
T Consensus 261 ~------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 261 F------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp S------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred h------------ccCcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 0 000111122 2468999999999998776654 67899999999999999984 668899999999
Q ss_pred EEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC-C---CCCccEEEeeCCC
Q 004022 382 LYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV-L---PFCLESLDLTGCN 453 (779)
Q Consensus 382 L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~-l---~~~L~~L~ls~n~ 453 (779)
|+|++|.++.+ |..+..+++|+.|++++|.+.+..|.. +++|++|++++|... .+|. . ..+|++|++++|+
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCC
Confidence 99999999976 567899999999999999998877754 478999999998654 4442 1 1389999999999
Q ss_pred CCCCCCC
Q 004022 454 MLRSLPE 460 (779)
Q Consensus 454 ~l~~l~~ 460 (779)
+....|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9876653
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.2e-29 Score=268.14 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=223.6
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.+..+++|+.|+++++.++ .++ ++..+ ++|++|++++|.++.+|....+++|++|++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-------------------SIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGT 97 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred cchhcccccEEEEeCCccc-------------------cch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccC
Confidence 4678999999999999884 343 35666 59999999999999998844899999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCC--cCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ--ISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~--~~~~L~~L~L~~n~i 200 (779)
|.++. + +++..+++|++|++++|.+ ..++.+..+++|+.|++++|.....++. ...+|+.|++++|.+
T Consensus 98 n~i~~--------~-~~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 98 NKITD--------I-SALQNLTNLRELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp SCCCC--------C-GGGTTCTTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CcccC--------c-hHHcCCCcCCEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 99986 3 3588999999999999984 5566688899999999999977655443 345677778877777
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
..++. +..+++|++|++++|.+... +. +..+++|+.|++++|...+..+ +..+++|++|++++|.++.++. +..
T Consensus 168 ~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~ 241 (347)
T 4fmz_A 168 KDVTP-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LAN 241 (347)
T ss_dssp CCCGG-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCchh-hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhc
Confidence 76665 66777788888877765443 33 6667777888877776655433 6677777788887777777766 777
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|+.|++++|.+... ..+..+++|+.|++++|.+... + .+..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~ 293 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-------------------------NAVKDLTKLKMLNVGSNQISDI-S--VLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCCC-------------------------hhHhcCCCcCEEEccCCccCCC-h--hhcCCCCCCEEE
Confidence 77777777777654321 1245567777777777776654 2 245677777777
Q ss_pred ecCCCCcc-CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCC
Q 004022 361 ISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 361 Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~ 412 (779)
+++|.+.+ .+..+..+++|++|++++|.++.++. +..+++|+.|++++|++
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 77777766 34556777777777777777776665 67777777777777765
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=277.89 Aligned_cols=298 Identities=21% Similarity=0.239 Sum_probs=210.7
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +.+|++|++++|.++.++. .| .+++|++|+|++|.++.+ .|.+|.++++|++|+|++|.+.
T Consensus 25 ~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~- 93 (477)
T 2id5_A 25 AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-------EPGAFNNLFNLRTLGLRSNRLK- 93 (477)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCC-
T ss_pred cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-------ChhhhhCCccCCEEECCCCcCC-
Confidence 556543 4688999999999888854 45 888999999999988875 5778888899999999888744
Q ss_pred CCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 159 SFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 159 ~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
.+|. +.++++|++|++++|... ...+..+..+++|++|++++|.+....+..+.++++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~--------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIV--------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCC--------------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred ccCcccccCCCCCCEEECCCCccc--------------------cCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 4443 456888888888887654 333556777888888888888777766777788888
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhc
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAA 315 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~ 315 (779)
|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+..+.+|...
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------- 220 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC------------- 220 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-------------
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-------------
Confidence 8888888887776666678888888888888888887655 47788888888888877666554422
Q ss_pred ccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccC-C
Q 004022 316 SAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESL-P 393 (779)
Q Consensus 316 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~l-p 393 (779)
....+|+.|++++|.+.. .+...+..+++|+.|++++|.++.++ ..+..+++|++|+|++|+++.+ |
T Consensus 221 ----------~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 221 ----------LYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp ----------TTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ----------ccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 223367777777776654 33333566677777777777776643 3466677777777777777644 4
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKM 433 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~ 433 (779)
..+..+++|+.|++++|.+.+..+.. .++|++|++++|+.
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 56667777777777777665544332 35677777776653
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.4e-28 Score=266.79 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=207.8
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCC-CCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRC 122 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~ 122 (779)
.+++||.|++++|.++ .+|..+ ..+ ++|++|++++|.++.++. .+ .+++|++|+|++
T Consensus 43 ~l~~l~~l~l~~~~l~-------------------~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-------------------KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp GGCCCSEEEEESCEES-------------------EECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCceEEEecCCchh-------------------hCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 4678888888888773 566553 345 588888888888888765 45 788888888888
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
|.++.+ .|..|+++++|++|+|++|.+. .+|. +.++++|++|++++|...
T Consensus 103 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-------------------- 154 (390)
T 3o6n_A 103 NAIRYL-------PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-------------------- 154 (390)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCCCcC-------CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC--------------------
Confidence 888775 5566788888888888888744 4544 356777777777777653
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
...+..++.+++|++|++++|.+... .+..+++|+.|++++|.... +...++|++|++++|.++.+|...
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~-- 224 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV-- 224 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--
Confidence 22234567777888888887775543 24557778888887775543 233457888888888888776533
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
.++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+.. +..+++|+.|+
T Consensus 225 ~~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~ 278 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT-------------------------AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLY 278 (390)
T ss_dssp CSSCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEE
T ss_pred cccccEEECCCCCCccc-------------------------HHHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEE
Confidence 47788888888765431 23556778888888888877665544 56788888888
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCc
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
+++|.++.+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|++...
T Consensus 279 L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 8888888887777788888888888888888887788888888888888876543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5e-28 Score=269.94 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=257.9
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
||++++....++ +|..+++|++|++++|.++ .+| +..+ ++|++|++++|.++.+|
T Consensus 47 L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-------------------~~~--~~~l-~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 47 LDCHNSSITDMT--GIEKLTGLTKLICTSNNIT-------------------TLD--LSQN-TNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EECCSSCCCCCT--TGGGCTTCSEEECCSSCCS-------------------CCC--CTTC-TTCSEEECCSSCCSCCC-
T ss_pred EEccCCCcccCh--hhcccCCCCEEEccCCcCC-------------------eEc--cccC-CCCCEEECcCCCCceee-
Confidence 555665554553 6999999999999999985 233 5566 59999999999999986
Q ss_pred CCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC-CcC
Q 004022 109 NFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP-QIS 187 (779)
Q Consensus 109 ~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~-~~~ 187 (779)
...+++|++|++++|+++. +| ++.+++|++|++++|.+.. ++ +..+++|++|++++|...+.++ ..+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--------l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l 169 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--------LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQ 169 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--------CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTC
T ss_pred cCCCCcCCEEECCCCcCCe--------ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccC
Confidence 3389999999999999987 33 7799999999999998554 43 7789999999999997666553 345
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.+|+.|++++|.++.+| ++.+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| ++.+++|+.|+++
T Consensus 170 ~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 78999999999999988 88999999999999987664 38889999999999998877 56 8899999999999
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR 347 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~ 347 (779)
+|.++.+| ++.+++|+.|+++.+++... .+.+|...+.+| ++.+++|+.|++++|...+.++.
T Consensus 242 ~N~l~~~~--~~~l~~L~~L~l~~n~L~~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 242 VNPLTELD--VSTLSKLTTLHCIQTDLLEI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTCCCSCC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCcCCCcC--HHHCCCCCEEeccCCCCCEE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 99999887 56778888888777543221 122333344444 35678888888888876554332
Q ss_pred -------hhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCC
Q 004022 348 -------TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP 420 (779)
Q Consensus 348 -------~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 420 (779)
..+...++|+.|++++|.++.++ ++.+++|+.|++++|+++.++ .|..|++++|.+.+. ..+
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~-------~L~~L~l~~n~l~g~--~~~ 373 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-------SVGKIPALNNNFEAE--GQT 373 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT-------TGGGSSGGGTSEEEE--EEE
T ss_pred CCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc-------ccccccccCCcEEec--cee
Confidence 12456789999999999999974 889999999999999988653 445555666555443 112
Q ss_pred CCccEEEEecCCCCCCCC
Q 004022 421 LCLKYLHLIDCKMLQSLP 438 (779)
Q Consensus 421 ~~L~~L~l~~c~~l~~lp 438 (779)
..|+.+++++|..-..+|
T Consensus 374 ~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp EECCCBCCBTTBEEEECC
T ss_pred eecCccccccCcEEEEcC
Confidence 234445555554444444
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-27 Score=258.27 Aligned_cols=301 Identities=16% Similarity=0.158 Sum_probs=249.3
Q ss_pred cEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC
Q 004022 23 AIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP 102 (779)
Q Consensus 23 ~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~ 102 (779)
.++.+.+. ++....++ +|..+++|++|++++|.++ .++. +..+ ++|++|++++|.
T Consensus 45 ~L~~L~l~--~~~i~~~~--~~~~~~~L~~L~l~~n~i~-------------------~~~~-~~~l-~~L~~L~L~~n~ 99 (347)
T 4fmz_A 45 SITKLVVA--GEKVASIQ--GIEYLTNLEYLNLNGNQIT-------------------DISP-LSNL-VKLTNLYIGTNK 99 (347)
T ss_dssp TCSEEECC--SSCCCCCT--TGGGCTTCCEEECCSSCCC-------------------CCGG-GTTC-TTCCEEECCSSC
T ss_pred cccEEEEe--CCccccch--hhhhcCCccEEEccCCccc-------------------cchh-hhcC-CcCCEEEccCCc
Confidence 45555444 44444444 4899999999999999885 2333 5566 599999999999
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~ 182 (779)
++.+|....+++|++|++++|.++. ++. +..+++|++|++++|.....++.+..+++|++|++++|.....
T Consensus 100 i~~~~~~~~l~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 100 ITDISALQNLTNLRELYLNEDNISD--------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CCCCGGGTTCTTCSEEECTTSCCCC--------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred ccCchHHcCCCcCCEEECcCCcccC--------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc
Confidence 9999865599999999999999987 344 7899999999999998888888888999999999999986543
Q ss_pred c-CCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccC
Q 004022 183 F-PQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261 (779)
Q Consensus 183 ~-~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 261 (779)
. ...+.+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|.+....+ +..+++|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 3 2456789999999999998887 8889999999999998765544 7889999999999998766544 8899999
Q ss_pred cEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCC
Q 004022 262 KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG 341 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~ 341 (779)
++|++++|.++.++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 246 ~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 246 TWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-------------------------SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC-------------------------hhhcCCCCCCEEECcCCcC
Confidence 99999999999884 588999999999999865431 2356789999999999998
Q ss_pred CCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 342 ~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
.+..+.. +..+++|+.|++++|.+++++. +..+++|++|++++|.++
T Consensus 300 ~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GNEDMEV-IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGHHH-HHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCcChhH-hhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 7765544 6789999999999999999766 888999999999999875
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=274.22 Aligned_cols=309 Identities=18% Similarity=0.171 Sum_probs=259.6
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcE
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVT 171 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~ 171 (779)
-+.++.+++.++.+|..+ +++|++|+|++|+|+.+ .|..|.++++|++|+|++|.+....|. +.++++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTL-------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceE-------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 467888999999999876 36899999999999985 567889999999999999986655454 566788888
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
|++++|.. ..+|. .+.++++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 85 L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 85 LGLRSNRL---------------------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp EECCSSCC---------------------CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred EECCCCcC---------------------CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 88877754 55665 578899999999999999888888899999999999999999888
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~ 329 (779)
.+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+ ..+..++
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----------------------~~~~~l~ 200 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----------------------YSFKRLY 200 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----------------------TCSCSCT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----------------------hhcccCc
Confidence 888999999999999999999998865 8999999999999987654332 3456778
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 407 (779)
+|+.|++++|...+..+...+ ...+|+.|++++|.++.+|. .+..+++|+.|+|++|.++.++ ..+..+++|+.|++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred ccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 999999999998877766543 34599999999999999884 6899999999999999999776 56899999999999
Q ss_pred CCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC--C--CCCccEEEeeCCCCC
Q 004022 408 EDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV--L--PFCLESLDLTGCNML 455 (779)
Q Consensus 408 s~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~--l--~~~L~~L~ls~n~~l 455 (779)
++|.+.+..|.. .++|++|++++|.. ..++. + ..+|++|++++|++.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCcccCEEEccCCCcc
Confidence 999998877764 47899999999954 44442 1 128999999999875
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-27 Score=276.89 Aligned_cols=303 Identities=16% Similarity=0.144 Sum_probs=208.9
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCC-CCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRC 122 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~ 122 (779)
.+.+++.|++++|.++ .+|..+ ..+ ++|++|++++|.++.++. .| .+++|++|+|++
T Consensus 49 ~l~~l~~l~l~~~~l~-------------------~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 108 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-------------------KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108 (597)
T ss_dssp GGCCCSEEEESSCEES-------------------EECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCceEEEeeCCCCC-------------------CcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC
Confidence 3566777777777663 455543 334 477777777777776664 34 677777777777
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
|.++.+ .|..|+++++|++|+|++|.+. .+|. +.++++|++|++++|...
T Consensus 109 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-------------------- 160 (597)
T 3oja_B 109 NAIRYL-------PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-------------------- 160 (597)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CcCCCC-------CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC--------------------
Confidence 777664 4555677777777777777644 3333 345667777777666543
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
...|..++.+++|++|++++|.+.+. + +..+++|+.|++++|.+.+ +...++|+.|++++|.++.++..+
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--
Confidence 22334677778888888888775543 2 4557778888888775543 234457888888888887776543
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
.++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+.. +..+++|+.|+
T Consensus 231 ~~~L~~L~L~~n~l~~-------------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 284 (597)
T 3oja_B 231 NVELTILKLQHNNLTD-------------------------TAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLY 284 (597)
T ss_dssp CSCCCEEECCSSCCCC-------------------------CGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEE
T ss_pred CCCCCEEECCCCCCCC-------------------------ChhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEE
Confidence 3678888888876543 133566778888888888887765554 56788888888
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCC
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCK 432 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~ 432 (779)
+++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+.+.....+++|+.|++++|+
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 888888888877778888888888888888888888888888888888887765544444555555555554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.9e-27 Score=257.53 Aligned_cols=297 Identities=14% Similarity=0.090 Sum_probs=199.8
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecC-CCCCCCCCCceEEEccCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
++++++....+++..|.++++|++|++++|.++ .++ ..+..+ ++|++|++++|.++.+|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------------~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------------EIDTYAFAYA-HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------------EECTTTTTTC-TTCCEEECCSSCCCCCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCccc-------------------ccChhhccCC-CCcCEEECCCCCCCcCC
Confidence 445555566788899999999999999999885 344 466666 59999999999999987
Q ss_pred CC-C-CCCCCcEEECCCCCCCCccCCCCcccCc-cccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCcccc
Q 004022 108 SN-F-KPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 108 ~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~-~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~ 183 (779)
.. + .+++|++|+|++|.++.+ |. .|.++++|++|++++|.+....|. +.++++|++|++++|.....-
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSL--------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred HHHhcCCCCCCEEECCCCccCcC--------CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 65 5 899999999999999974 44 468999999999999997665554 667999999999998765443
Q ss_pred CCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcE
Q 004022 184 PQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 263 (779)
Q Consensus 184 ~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 263 (779)
...+.+|+.|++++|.+..++. .++|++|++++|.+... |.. ..++|++|++++|.+.+. ..+..+++|++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~----~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEEC----CSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cccccccceeecccccccccCC----CCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 4445566666666666554432 24566666666554332 221 134555555555544432 33445555555
Q ss_pred eecCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCC
Q 004022 264 IYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL 342 (779)
Q Consensus 264 L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~ 342 (779)
|++++|.++.+ |..+..+++| +.|++++|.+.
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L-----------------------------------------------~~L~L~~n~l~ 285 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRL-----------------------------------------------ERLYISNNRLV 285 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSC-----------------------------------------------CEEECCSSCCC
T ss_pred EECCCCcCCCcChhHccccccC-----------------------------------------------CEEECCCCcCc
Confidence 55555555433 3334444444 44444444444
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
+.... ...+++|+.|++++|.+..+|..+..+++|++|++++|.++.++ +..+++|+.|++++|++.
T Consensus 286 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 286 ALNLY--GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EEECS--SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ccCcc--cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 32211 23566777777777777777766667777777777777777765 667777777777777654
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=7.5e-27 Score=272.88 Aligned_cols=394 Identities=20% Similarity=0.190 Sum_probs=222.4
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCC-CCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNG-LDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+++++|+++++|++|+|++|+++ .+|.+ +..+ .+|++|++++|.++.+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-------------------~l~~~~f~~L-~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------------------SLALGAFSGL-SSLQKLVAVETNLASL 139 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECGGGGTTC-TTCCEEECTTSCCCCS
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-------------------CCCHHHhcCC-CCCCEEECCCCcCCCC
Confidence 4677777777899999999999999999999985 44443 4455 5888888888888888
Q ss_pred CCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC----------------------
Q 004022 107 PSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---------------------- 162 (779)
Q Consensus 107 p~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---------------------- 162 (779)
|.. | .+++|++|+|++|.++.+ . +|..++.+++|++|+|++|++.+..+.
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~---~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCC---C---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ChhhhhcCcccCeeccccCccccC---C---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 764 4 778888888888887652 1 466777788888888888775432221
Q ss_pred ------CCCCCCCcEEEecCCcCccc------------------------------------------------------
Q 004022 163 ------NLHFVCPVTINFSYCVNLIE------------------------------------------------------ 182 (779)
Q Consensus 163 ------~~~l~~L~~L~L~~~~~l~~------------------------------------------------------ 182 (779)
......++.+++.++.....
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 11112223333333211100
Q ss_pred -------cCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhh
Q 004022 183 -------FPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 255 (779)
Q Consensus 183 -------~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l 255 (779)
......+++.+.+.++.+..++ .+.....|+.|++.+|.+....+. .+..|+.+.+..+...... ..
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~ 367 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SE 367 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CC
T ss_pred cccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cc
Confidence 0001123444555555444443 234456677777777654332221 2334444444443322211 12
Q ss_pred hcCccCcEeecCCcCCCc---CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCC-ccccCccc
Q 004022 256 EKMEHLKRIYSDRTPITE---LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLP-SSVALSNM 330 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp-~~l~~l~~ 330 (779)
..+++|+.|++++|.+.. .+..+..+.+|+.|++..+.... .+..+..+++|+. .+..++.....+ ..+..+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 234444444444444431 12223334444444444433222 2222333333333 222222222222 23455666
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCccC-ChhccCCCCCCEEEc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHL 407 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 407 (779)
++.++++.|.+....+.. +..++.|+.|++++|.... .|..+..+++|++|+|++|+++.+ |..+.++++|+.|+|
T Consensus 447 l~~l~ls~n~l~~~~~~~-~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccc-cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 777777777665554433 4566777777777775433 556667777777777777777755 355677777777777
Q ss_pred CCCCCCCcCCC---CCCCccEEEEecCCCCCCCC----CCCCCccEEEeeCCCCC
Q 004022 408 EDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLP----VLPFCLESLDLTGCNML 455 (779)
Q Consensus 408 s~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp----~l~~~L~~L~ls~n~~l 455 (779)
++|.+.+..+. .+++|+.|++++|+.....| .++.+|++|++++|++.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 77766655443 23567777777775543333 34568899999998764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-26 Score=267.59 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=204.3
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
++++++....+++..|.++++|++|++++|.++ ...|..+..+ .+|++|++++|.++.+|.
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------------------~~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------EIDTYAFAYA-HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCC------------------EECTTTTTTC-TTCCEEECCSSCCCCCCT
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------------------CCChHHhcCC-CCCCEEECCCCcCCCCCH
Confidence 555666667789999999999999999999985 2234466677 599999999999999886
Q ss_pred C-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCC
Q 004022 109 N-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 109 ~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
. | .+++|++|+|++|.++.+ .+..|+++++|++|+|++|.+....|. +.++++|+.|++++|......+.
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSL-------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred HHHcCCCCCCEEEeeCCCCCCC-------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 5 4 899999999999999974 334468999999999999997766665 66799999999999987654445
Q ss_pred cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEee
Q 004022 186 ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265 (779)
Q Consensus 186 ~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 265 (779)
.+++|+.|++++|.+..++ ..++|+.|++++|.+... +..+ .++|+.|++++|.+.+ +..+..+++|+.|+
T Consensus 190 ~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVD 260 (597)
T ss_dssp GCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred hhhhhhhhhcccCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEE
Confidence 5566666666666665443 234566666666654322 2211 2455555555555443 23445555555555
Q ss_pred cCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 266 SDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 266 L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+++|.++.+ |..++.+++|+.|+|+ +|.+.+.
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls-----------------------------------------------~N~l~~l 293 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYIS-----------------------------------------------NNRLVAL 293 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECT-----------------------------------------------TSCCCEE
T ss_pred CCCCccCCCCHHHhcCccCCCEEECC-----------------------------------------------CCCCCCC
Confidence 555555533 3344445555555554 4444432
Q ss_pred cChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
... ...+++|+.|++++|.+..+|..+..+++|+.|+|++|.++.+| +..+++|+.|++++|++..
T Consensus 294 ~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 294 NLY--GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECS--SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred Ccc--cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 211 23566777777777777777776777777777777777777665 5667777777777777643
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=8.1e-26 Score=241.87 Aligned_cols=266 Identities=18% Similarity=0.178 Sum_probs=187.6
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
.+|++++++++.++.+|..+. ++|++|+|++|+++.+ .+..|+++++|++|+|++|.+....|. +.++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEe-------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 479999999999999998764 6899999999999985 445788999999999999986665454 5668888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
++|++++|.. ..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|....
T Consensus 103 ~~L~Ls~n~l---------------------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 103 ERLYLSKNQL---------------------KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CEEECCSSCC---------------------SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CEEECCCCcC---------------------CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 8888887764 44444443 567777777776665555556667777777777766643
Q ss_pred --ccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 250 --HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 --~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
..+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+.+.. |..+..
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~-----------------------~~~~~~ 214 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD-----------------------AASLKG 214 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC-----------------------TGGGTT
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC-----------------------HHHhcC
Confidence 456667777777777777777777776543 67777777776554332 233455
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChh-cc------CCC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAI-IK------QMS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~ 400 (779)
+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++.. +. ..+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 667777777777766544432 4567777777777777777777777777777777777777766532 22 235
Q ss_pred CCCEEEcCCCCCC
Q 004022 401 QLRFIHLEDFNML 413 (779)
Q Consensus 401 ~L~~L~Ls~n~~~ 413 (779)
.|+.|++++|++.
T Consensus 294 ~l~~l~l~~N~~~ 306 (330)
T 1xku_A 294 SYSGVSLFSNPVQ 306 (330)
T ss_dssp CCSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 6666666666653
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=5.4e-26 Score=243.44 Aligned_cols=265 Identities=15% Similarity=0.157 Sum_probs=157.2
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
.+|++++++++.++.+|..+ .++|++|++++|.++.+ .|.+|.++++|++|++++|.+....|. +.++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISEL-------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCcc-------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 37999999999999999876 36899999999999875 566888999999999999986655454 5668888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC-
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL- 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~- 248 (779)
++|++++|... .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 105 ~~L~L~~n~l~---------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 105 QKLYISKNHLV---------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CEEECCSSCCC---------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CEEECCCCcCC---------------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 88888887653 3333322 44455555544443333333444555555555554442
Q ss_pred -cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 -EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 -~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+..+..+..+ +|++|++++|.++.+|..+. ++|+.|++++|.+.+..+ ..+..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-----------------------~~l~~ 215 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL-----------------------EDLLR 215 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT-----------------------TSSTT
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH-----------------------HHhcC
Confidence 1334444444 55555555555555555432 455555555554433222 22334
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCCh-hccC------CC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQ------MS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~ 400 (779)
+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++. .+.. .+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhH-hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 445555555555554433322 345556666666666666666555666666666666666665542 2222 24
Q ss_pred CCCEEEcCCCCCC
Q 004022 401 QLRFIHLEDFNML 413 (779)
Q Consensus 401 ~L~~L~Ls~n~~~ 413 (779)
+|+.|++++|++.
T Consensus 295 ~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 295 YYNGISLFNNPVP 307 (332)
T ss_dssp CBSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 4555555555543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.2e-24 Score=229.41 Aligned_cols=285 Identities=17% Similarity=0.168 Sum_probs=184.8
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSK 124 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~ 124 (779)
..+|+.++++++.++ .+|..+ +++|++|++++|.++.++. .+ .+++|++|+|++|.
T Consensus 30 ~c~l~~l~~~~~~l~-------------------~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-------------------KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87 (330)
T ss_dssp EEETTEEECTTSCCC-------------------SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCeEEEecCCCcc-------------------ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc
Confidence 447899999988774 566544 3689999999999999987 45 89999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccC
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp 204 (779)
++.+ .|..|+.+++|++|++++|.+ +.+|.... ++|++|++++|... .++
T Consensus 88 l~~~-------~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~-~~L~~L~l~~n~l~---------------------~~~ 137 (330)
T 1xku_A 88 ISKI-------SPGAFAPLVKLERLYLSKNQL-KELPEKMP-KTLQELRVHENEIT---------------------KVR 137 (330)
T ss_dssp CCCB-------CTTTTTTCTTCCEEECCSSCC-SBCCSSCC-TTCCEEECCSSCCC---------------------BBC
T ss_pred CCee-------CHHHhcCCCCCCEEECCCCcC-CccChhhc-ccccEEECCCCccc---------------------ccC
Confidence 9985 688899999999999999984 46665332 67777777777653 333
Q ss_pred c-ccCCCCCccEEeeeCCCCCc--ccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCC
Q 004022 205 S-SIECLTDLEVLDLRGCKRLK--RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFEN 280 (779)
Q Consensus 205 ~-~l~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~ 280 (779)
. .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.++.+ |..+..
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 2 34555666666666655432 344445556666666666554432 333222 5566666666666654 344666
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+..... . +..+++|+.|+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~lp~-~-l~~l~~L~~L~ 269 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDN-----------------------GSLANTPHLRELHLNNNKLVKVPG-G-LADHKYIQVVY 269 (330)
T ss_dssp CTTCCEEECCSSCCCEECT-----------------------TTGGGSTTCCEEECCSSCCSSCCT-T-TTTCSSCCEEE
T ss_pred CCCCCEEECCCCcCceeCh-----------------------hhccCCCCCCEEECCCCcCccCCh-h-hccCCCcCEEE
Confidence 6666666666654433221 123445566666666666553322 2 34667777777
Q ss_pred ecCCCCccCCcc-cC------CCCCccEEEEecCCCc---cCChhccCCCCCCEEEcCCCC
Q 004022 361 ISDYAVREIPQE-IA------YLSSLEILYLSGNNFE---SLPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 361 Ls~~~l~~~p~~-l~------~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~ 411 (779)
+++|.++.++.. +. ..++|+.|++++|.+. ..|..+..+++|+.+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777765432 22 2467888888888776 234678888888888888874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=3.9e-25 Score=236.79 Aligned_cols=283 Identities=16% Similarity=0.166 Sum_probs=202.4
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i 125 (779)
.+|+.++++++.++ .+|..+ +++|++|++++|.++.++. .+ .+++|++|+|++|++
T Consensus 33 c~l~~l~~~~~~l~-------------------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-------------------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp EETTEEECCSSCCS-------------------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCEEECCCCCcc-------------------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 47999999999874 566554 3589999999999999865 45 899999999999999
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
+.+ .|.+|+++++|++|++++|.+ +.+|.... ++|++|++++|.. ..++.
T Consensus 91 ~~~-------~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~L~~L~l~~n~i---------------------~~~~~ 140 (332)
T 2ft3_A 91 SKI-------HEKAFSPLRKLQKLYISKNHL-VEIPPNLP-SSLVELRIHDNRI---------------------RKVPK 140 (332)
T ss_dssp CEE-------CGGGSTTCTTCCEEECCSSCC-CSCCSSCC-TTCCEEECCSSCC---------------------CCCCS
T ss_pred Ccc-------CHhHhhCcCCCCEEECCCCcC-CccCcccc-ccCCEEECCCCcc---------------------CccCH
Confidence 975 678899999999999999985 46665332 6677777766654 44444
Q ss_pred -ccCCCCCccEEeeeCCCCC--cccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRL--KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENL 281 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l 281 (779)
.+..+++|++|++++|.+. +..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.++.++ ..+..+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence 4667777777777777663 2455556656 77777777776554 444332 57777788887777665 457777
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEe
Q 004022 282 PGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 361 (779)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L 361 (779)
++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+... |.. +..+++|+.|++
T Consensus 217 ~~L~~L~L~~N~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l 271 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIEN-----------------------GSLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYL 271 (332)
T ss_dssp TTCSCCBCCSSCCCCCCT-----------------------TGGGGCTTCCEEECCSSCCCBC-CTT-GGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCh-----------------------hHhhCCCCCCEEECCCCcCeec-Chh-hhcCccCCEEEC
Confidence 788888887776544322 2345667777788877777643 332 457788888888
Q ss_pred cCCCCccCCcc-cCC------CCCccEEEEecCCCc--c-CChhccCCCCCCEEEcCCCC
Q 004022 362 SDYAVREIPQE-IAY------LSSLEILYLSGNNFE--S-LPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 362 s~~~l~~~p~~-l~~------l~~L~~L~Ls~n~l~--~-lp~~l~~l~~L~~L~Ls~n~ 411 (779)
++|.++.++.. +.. .++|+.|++++|.+. . .|..+..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888876532 322 467899999999876 3 44678889999999998875
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.1e-25 Score=238.53 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=94.7
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCc-cCcEeecCCcCCC-cCCccCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME-HLKRIYSDRTPIT-ELPSSFEN 280 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~ 280 (779)
+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.++ .+|..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 333344444444444444444434444444444444444444444444444444443 4444444444444 33333444
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
++ |+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+. +..+++|++|+
T Consensus 197 l~-L~~L~Ls~N~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~ 250 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDA-----------------------SVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD 250 (313)
T ss_dssp CC-CSEEECCSSEEEECC-----------------------GGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEE
T ss_pred Cc-ccEEECcCCcccCcC-----------------------CHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEE
Confidence 43 444444444332221 22233344455555555554443333 34566777777
Q ss_pred ecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCCC
Q 004022 361 ISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 361 Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
+++|.+++ +|..+..+++|++|+|++|+++ .+|.. ..+++|+.+++++|+..
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 77777763 6667777777777777777776 55553 66777777777777643
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.3e-23 Score=237.95 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=219.9
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.++++|++++|.++.+|..+. ++|++|+|++|+|+. +|. .+++|++|+|++|. ++.+|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCC-CSCCCC--CCTTCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCC
Confidence 468999999999999998775 899999999999987 455 57899999999998 456776 789999
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..+|..+.+|+.|++++|.+..+|.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.+..
T Consensus 105 ~L~Ls~N~l-~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 105 ELSIFSNPL-THLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp EEEECSCCC-CCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred EEECcCCcC-CCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 999999865 45677888999999999999999875 4889999999997654 454 35789999999987665
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+.. + |. .+++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l-----------------------~~---~~~~ 222 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-L-----------------------PA---LPSG 222 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-C-----------------------CC---CCTT
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-c-----------------------CC---CCCC
Confidence 55 4578899999999999998864 5789999999876542 2 22 2378
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCC
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 410 (779)
|+.|++++|.+.+.. ..+++|+.|++++|.++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|
T Consensus 223 L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 223 LKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence 999999999887643 367899999999999999887 678999999999999999999999999999999999
Q ss_pred CCCCcCCC
Q 004022 411 NMLQSLPE 418 (779)
Q Consensus 411 ~~~~~~~~ 418 (779)
++.+..|.
T Consensus 295 ~l~~~~~~ 302 (622)
T 3g06_A 295 PLSERTLQ 302 (622)
T ss_dssp CCCHHHHH
T ss_pred CCCCcCHH
Confidence 98876654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=9.4e-26 Score=239.19 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=155.1
Q ss_pred CCCcEEEecCCcCcc--ccCCcC---CCccEEEecC-cCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcE
Q 004022 167 VCPVTINFSYCVNLI--EFPQIS---GKVTRLYLGQ-SAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVT 239 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~--~~~~~~---~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 239 (779)
.+++.|++++|...+ .+|..+ .+|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777776654 444332 3455666653 4443 45555556666666666665555555555555666666
Q ss_pred EecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCC-CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhccc
Q 004022 240 LILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLP-GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASA 317 (779)
Q Consensus 240 L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~ 317 (779)
|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--------------------- 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--------------------- 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---------------------
Confidence 666665555555555666666666666666665 5555555555 56666666554433
Q ss_pred CCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 318 ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 318 ~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
.+|..+..++ |+.|++++|.+.+..+.. +..+++|+.|++++|.++..+..+..+++|++|+|++|.++ .+|..+
T Consensus 189 --~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 189 --KIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --ECCGGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --cCChHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 3344455555 888888888877655543 56788888888888888775555777888888888888887 777788
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCC--CCCccEEEEecCCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKM 433 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~--~~~L~~L~l~~c~~ 433 (779)
..+++|+.|++++|++.+.+|.. +++|+.|++.+|+.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 88888888888888877777653 24455555555543
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=234.29 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=155.3
Q ss_pred CCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHF 166 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l 166 (779)
++|++|++++|.++.+|. .+ .+++|++|++++|+++.+ .|.+|.++++|++|++++|.+. .+|. +.++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-------EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-------CHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCC
Confidence 356666666666665554 23 556666666666665543 3445555666666666665533 2322 3344
Q ss_pred CCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcc-cccccCCCCCCcEEecc
Q 004022 167 VCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKR-ISTSFCKLRSLVTLILL 243 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~L~ 243 (779)
++|++|++++| .+..+|. .+..+++|++|++++|...+. .+..+.++++|++|+++
T Consensus 124 ~~L~~L~L~~n---------------------~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 124 SSLTFLNLLGN---------------------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp TTCSEEECTTC---------------------CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred ccCCEEECCCC---------------------CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 45555544444 3455655 567777788888877743333 34557777777777777
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+|.+.+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------ 244 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------ 244 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------------
Confidence 7777776677777777777777777777766654 334667777777776554432221100
Q ss_pred ccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCccCChh-c
Q 004022 323 SSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFESLPAI-I 396 (779)
Q Consensus 323 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l 396 (779)
......++.++++++.+.+ +|..+..+++|++|++++|+++.+|.. +
T Consensus 245 ---------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 245 ---------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 1123445555555555443 566677788888888888888888866 4
Q ss_pred cCCCCCCEEEcCCCCCCCcCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
..+++|++|++++|++....|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 788888888888887765443
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=8e-24 Score=225.75 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=165.3
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i 125 (779)
..+++.|++++|.++ .+|..+..+ .+|++|++++|.++.+|..+ .+++|++|+|++|.+
T Consensus 80 ~~~l~~L~L~~n~l~-------------------~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-------------------QFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139 (328)
T ss_dssp STTCCEEEEESSCCS-------------------SCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC
T ss_pred ccceeEEEccCCCch-------------------hcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc
Confidence 478999999999883 678888887 59999999999999999887 899999999999999
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCC----------CCCCCcEEEecCCcCccccCCc---CCCccE
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL----------HFVCPVTINFSYCVNLIEFPQI---SGKVTR 192 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~----------~l~~L~~L~L~~~~~l~~~~~~---~~~L~~ 192 (779)
+. +|..++++++|++|++++|...+.+|... ++++|++|++++|... .+|.. +.+|+.
T Consensus 140 ~~--------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 140 RA--------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp CC--------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred cc--------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 86 78889999999999999988888888743 2777888888777554 55543 345677
Q ss_pred EEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC
Q 004022 193 LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 193 L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
|++++|.+..+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.+.
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 77777777777766777777777777777777777766777777777777777777777776777777777777775544
Q ss_pred -cCCccCCCCCCCCEEeccCC
Q 004022 273 -ELPSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 273 -~lp~~l~~l~~L~~L~L~~~ 292 (779)
.+|.+++.+++|+.+++..+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGG
T ss_pred hhccHHHhhccCceEEeCCHH
Confidence 56666777777777766653
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.3e-27 Score=266.22 Aligned_cols=350 Identities=16% Similarity=0.102 Sum_probs=216.3
Q ss_pred EeecccccccccCh-hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDP-RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~-~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....... ..|..+++|+.|++++|.+++. ....++..+..+ ++|++|++++|.++..
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------------~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~ 71 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--------------RCKDISSALRVN-PALAELNLRSNELGDV 71 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--------------HHHHHHHHHHTC-TTCCEEECTTCCCHHH
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--------------HHHHHHHHHHhC-CCcCEEeCCCCcCChH
Confidence 45555554333333 3488999999999999988411 112445556666 4899999999998642
Q ss_pred C--CCC-CCC----CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC------CCCCCCCcEEE
Q 004022 107 P--SNF-KPK----NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS------NLHFVCPVTIN 173 (779)
Q Consensus 107 p--~~~-~l~----~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~------~~~l~~L~~L~ 173 (779)
. ..+ .+. +|++|+|++|+++...-+. ++..+..+++|++|+|++|.+....+. ....++|++|+
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~---l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH---HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 1 111 333 7999999999988421011 677888999999999999985432111 12256799999
Q ss_pred ecCCcCcccc----CC---cCCCccEEEecCcCCcccC-cccC-----CCCCccEEeeeCCCCCcc----cccccCCCCC
Q 004022 174 FSYCVNLIEF----PQ---ISGKVTRLYLGQSAIEEVP-SSIE-----CLTDLEVLDLRGCKRLKR----ISTSFCKLRS 236 (779)
Q Consensus 174 L~~~~~l~~~----~~---~~~~L~~L~L~~n~i~~lp-~~l~-----~l~~L~~L~L~~~~~~~~----lp~~l~~l~~ 236 (779)
+++|...... +. ...+|+.|++++|.+.... ..+. ..++|++|++++|.+... ++..+..+++
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 9998765422 21 2357777777777764321 1111 245777777777765542 4555666777
Q ss_pred CcEEecccccCCccc-----chhhhcCccCcEeecCCcCCCc-----CCccCCCCCCCCEEeccCCCCCCCCCCCCCCch
Q 004022 237 LVTLILLGCLNLEHF-----PEILEKMEHLKRIYSDRTPITE-----LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLE 306 (779)
Q Consensus 237 L~~L~L~~~~~~~~~-----p~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 306 (779)
|++|++++|.+.... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+....+.
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------ 302 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR------ 302 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH------
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH------
Confidence 777777777654332 1222246777777777777775 566666677777777777654221100
Q ss_pred hHHHHHhhcccCCcCCccc-cCccccCeeeccCCCCCCccCh---hhccCCCCCcEEEecCCCCccC-Cc----ccC-CC
Q 004022 307 YLYYILAAASAISQLPSSV-ALSNMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVREI-PQ----EIA-YL 376 (779)
Q Consensus 307 ~L~~~~~~~~~~~~lp~~l-~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~~-p~----~l~-~l 376 (779)
. +...+ ...++|++|++++|.+...... ..+..+++|++|++++|.+++. +. .+. ..
T Consensus 303 ~-------------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 303 L-------------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp H-------------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred H-------------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 0 00001 1234677777777776554211 1134567777777777776652 22 222 25
Q ss_pred CCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCCC
Q 004022 377 SSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
++|++|++++|.++ .+|..+..+++|++|++++|++..
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 67777777777777 566667777777777777776643
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.8e-23 Score=222.96 Aligned_cols=156 Identities=24% Similarity=0.416 Sum_probs=91.3
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
.++++|++++|.++.+|..+ .+++|++|+|++|.++. +|..++++++|++|+|++|.+. .+|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls~n~l~-~lp-------- 143 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--------LPDTMQQFAGLETLTLARNPLR-ALP-------- 143 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC--------CCSCGGGGTTCSEEEEESCCCC-CCC--------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc--------hhHHHhccCCCCEEECCCCccc-cCc--------
Confidence 36667777777766666655 66666666666666664 5666666666666666666533 333
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccC---------CCCCCcEE
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC---------KLRSLVTL 240 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~---------~l~~L~~L 240 (779)
..++++++|++|++++|...+.+|..+. ++++|++|
T Consensus 144 -----------------------------------~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L 188 (328)
T 4fcg_A 144 -----------------------------------ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188 (328)
T ss_dssp -----------------------------------GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE
T ss_pred -----------------------------------HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE
Confidence 3344444444444444444444443332 35666666
Q ss_pred ecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 241 ILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 241 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
++++|.+. .+|..++.+++|++|++++|.++.+|..++.+++|+.|++++|++.+.+|
T Consensus 189 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred ECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence 66665544 55555666666666666666666666666666666666666665554443
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=3.5e-22 Score=229.35 Aligned_cols=270 Identities=17% Similarity=0.169 Sum_probs=224.1
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
....+++.|++++|.++ .+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+
T Consensus 37 c~~~~l~~L~ls~n~L~-------------------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~ 92 (622)
T 3g06_A 37 CLNNGNAVLNVGESGLT-------------------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ 92 (622)
T ss_dssp HHHHCCCEEECCSSCCS-------------------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC
T ss_pred ccCCCCcEEEecCCCcC-------------------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc
Confidence 34457999999999884 6666554 599999999999999998 67899999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccC
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp 204 (779)
|+. +|. .+++|++|+|++|. ++.+|. .+++|+.|++++|.. ..+|..+.+|+.|++++|.+..+|
T Consensus 93 l~~--------lp~---~l~~L~~L~Ls~N~-l~~l~~--~l~~L~~L~L~~N~l-~~lp~~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 93 LTS--------LPV---LPPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp CSC--------CCC---CCTTCCEEEECSCC-CCCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CCc--------CCC---CCCCCCEEECcCCc-CCCCCC--CCCCcCEEECCCCCC-CcCCCCCCCCCEEECcCCcCCCcC
Confidence 987 555 77999999999998 455666 678999999999974 568888899999999999999988
Q ss_pred cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCC
Q 004022 205 SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGL 284 (779)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 284 (779)
.. +.+|+.|++++|.+.. +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|
T Consensus 158 ~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L 223 (622)
T 3g06_A 158 AL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGL 223 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTC
T ss_pred Cc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCC
Confidence 64 4689999999988654 56 447899999999988765 444 357899999999999999864 5899
Q ss_pred CEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~ 364 (779)
+.|++++|.+.+ + | ..+++|+.|++++|.+..... .+++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-l-----------------------p---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 224 KELIVSGNRLTS-L-----------------------P---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp CEEECCSSCCSC-C-----------------------C---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred CEEEccCCccCc-C-----------------------C---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCC
Confidence 999999986543 2 2 245789999999999875433 6789999999999
Q ss_pred CCccCCcccCCCCCccEEEEecCCCcc-CChhccCC
Q 004022 365 AVREIPQEIAYLSSLEILYLSGNNFES-LPAIIKQM 399 (779)
Q Consensus 365 ~l~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l 399 (779)
.++.+|..+..+++|+.|+|++|.++. .|..+..+
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 999999999999999999999999983 44544443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.7e-22 Score=223.09 Aligned_cols=244 Identities=23% Similarity=0.209 Sum_probs=172.4
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
...+.++.++..++.+|..+. ++|++|+|++|+|+.+ .|..|.++++|++|+|++|.+....+. +.++++|
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceE-------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence 356788888889999987664 6899999999999875 577888999999999999885544433 5557777
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
++|++++|.. ..+|. .+..+++|++|++++|.+....+..+..+++|++|++++|...
T Consensus 126 ~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 126 NTLELFDNWL---------------------TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184 (452)
T ss_dssp CEEECCSSCC---------------------SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred CEEECCCCcC---------------------CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc
Confidence 7777777654 44443 4677788888888887766555556777888888888876666
Q ss_pred cccch-hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 EHFPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 ~~~p~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+.++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.
T Consensus 185 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-------------------------------- 231 (452)
T 3zyi_A 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFP-------------------------------- 231 (452)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCS--------------------------------
T ss_pred cccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCc--------------------------------
Confidence 55544 46677777777777777776653 555556666666555433
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 405 (779)
+..+.. +.++++|+.|++++|.+.. .+..+..+++|+.|+|++|+++.+| ..+..+++|+.|
T Consensus 232 ---------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 232 ---------------EIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp ---------------EECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ---------------ccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 322222 4566667777777777766 3556777888888888888888776 446778888888
Q ss_pred EcCCCCC
Q 004022 406 HLEDFNM 412 (779)
Q Consensus 406 ~Ls~n~~ 412 (779)
++++|++
T Consensus 296 ~L~~Np~ 302 (452)
T 3zyi_A 296 HLHHNPW 302 (452)
T ss_dssp ECCSSCE
T ss_pred EccCCCc
Confidence 8888764
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=222.52 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=171.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
...+.++.++..++.+|..+. ++++.|+|++|+|+.+ .+..|.++++|++|+|++|.+....+. +.++++|
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQII-------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEE-------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCee-------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 356788888999999998764 6889999999999875 556788899999999998875433322 4556777
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
++|++++|.. ..++. .+..+++|++|++++|.+....+..+..+++|++|++++|...
T Consensus 115 ~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 115 NTLELFDNRL---------------------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp CEEECCSSCC---------------------SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred CEEECCCCcC---------------------CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc
Confidence 7777766644 44544 5677788888888887766555556777888888888776665
Q ss_pred cccch-hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 EHFPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 ~~~p~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+.++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|.
T Consensus 174 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~--------------------------- 225 (440)
T 3zyj_A 174 SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPG--------------------------- 225 (440)
T ss_dssp CEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTT---------------------------
T ss_pred ceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChh---------------------------
Confidence 55543 56777777777777777777664 55666666666666544332221
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-CcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 405 (779)
. +.++++|+.|++++|.++.+ +..+..+++|+.|+|++|+++.+| ..+..+++|+.|
T Consensus 226 --------------------~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 226 --------------------S-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp --------------------T-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred --------------------h-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 1 34566666777777776663 455777788888888888888776 346778888888
Q ss_pred EcCCCCC
Q 004022 406 HLEDFNM 412 (779)
Q Consensus 406 ~Ls~n~~ 412 (779)
+|++|++
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 8887764
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=7.8e-23 Score=216.18 Aligned_cols=244 Identities=20% Similarity=0.234 Sum_probs=133.9
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC---CCCCCCCCCCc
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS---FPSNLHFVCPV 170 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~---~p~~~~l~~L~ 170 (779)
+.++++++.++.+|..+. ++|++|+|++|+++.+ .+..|.++++|++|+|++|.+... .+.+.++++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCcc-------CHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 356666666777766543 5677777777776653 222356667777777776653211 11122344444
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 82 ~L~Ls~n~---------------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 82 YLDLSFNG---------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EEECCSCS---------------------EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred EEECCCCc---------------------cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 44444443 34555555566666666666665443332 345556666666666666555
Q ss_pred ccchhhhcCccCcEeecCCcCCCc--CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITE--LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
..+..+..+++|++|++++|.++. +|..+..+++|+.|++++|.+.+..| ..+..
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~ 197 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNS 197 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcC
Confidence 555666666666666666666654 55556666666666666655433222 22333
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCC-CccEEEEecCCCc
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLS-SLEILYLSGNNFE 390 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~-~L~~L~Ls~n~l~ 390 (779)
+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+ .|..+..++ +|++|+|++|.++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 445555555555544433222 3455556666666665555 334445543 5666666666554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.3e-22 Score=212.11 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=142.3
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
++++.+++.++.+|..+ +++|++|++++|.++.+ .+..|..+++|++|++++|.+....|. +.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHV-------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCcc-------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 67788888888888655 46788888888888774 445677888888888888875544343 5557777777
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
++++|..+ ..+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus 86 ~l~~n~~l--------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 86 DLSDNAQL--------------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp ECCSCTTC--------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred eCCCCCCc--------------------cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 77776533 333 445666677777777777666655666666777777777776666555
Q ss_pred chhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..|. .+..+++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~ 202 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------AFRDLGR 202 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------------TTTTCTT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-----------------------HccCccc
Confidence 55566677777777777777766653 66677777777776655433322 2334455
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~ 367 (779)
|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCcc
Confidence 5556665555554322 22445555555555555544
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=7.4e-26 Score=253.92 Aligned_cols=362 Identities=15% Similarity=0.118 Sum_probs=243.6
Q ss_pred CCCceEEEccCCCCCCCCCC--C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CC-C
Q 004022 90 PKKLRYLHWDTYPLRTLPSN--F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SN-L 164 (779)
Q Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~-~ 164 (779)
|++|++|++++|.++..+.. + .+++|++|+|++|+++...... ++..+..+++|++|+|++|.+....+ .+ .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~---l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD---ISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHH---HHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHH---HHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 35788999998888755422 3 6788999999998887421001 56677788899999998887543222 11 1
Q ss_pred CCC----CCcEEEecCCcCcc----ccC---CcCCCccEEEecCcCCccc-----Ccc-cCCCCCccEEeeeCCCCCcc-
Q 004022 165 HFV----CPVTINFSYCVNLI----EFP---QISGKVTRLYLGQSAIEEV-----PSS-IECLTDLEVLDLRGCKRLKR- 226 (779)
Q Consensus 165 ~l~----~L~~L~L~~~~~l~----~~~---~~~~~L~~L~L~~n~i~~l-----p~~-l~~l~~L~~L~L~~~~~~~~- 226 (779)
.++ +|++|++++|.... .++ ....+|+.|++++|.+... ... ....++|++|++++|.+...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 233 68899998887653 223 3445788888888887532 222 22356788899988876653
Q ss_pred ---cccccCCCCCCcEEecccccCCcccchhhh-----cCccCcEeecCCcCCCc-----CCccCCCCCCCCEEeccCCC
Q 004022 227 ---ISTSFCKLRSLVTLILLGCLNLEHFPEILE-----KMEHLKRIYSDRTPITE-----LPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 227 ---lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~~~ 293 (779)
++..+..+++|++|++++|.+....+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 355566778889999988876554443333 35688899998888885 56667778888999888876
Q ss_pred CCCCCCCCCCCchhHHHHHhhcccCCcC-CccccCccccCeeeccCCCCCCc----cChhhccCCCCCcEEEecCCCCcc
Q 004022 294 KLDNLPDNIGSLEYLYYILAAASAISQL-PSSVALSNMLRSLDSSHCKGLES----FPRTFLLGLSAMGLLHISDYAVRE 368 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~~~~~~~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~Ls~~~l~~ 368 (779)
+.... + ..+ +..+..+++|++|++++|.+... ++.. +..+++|++|++++|.+.+
T Consensus 239 l~~~~---------~----------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 239 LGDVG---------M----------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGD 298 (461)
T ss_dssp CHHHH---------H----------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHH
T ss_pred CChHH---------H----------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCch
Confidence 43210 0 001 11123467888999998877654 2222 4567889999999888765
Q ss_pred -----CCccc-CCCCCccEEEEecCCCcc-----CChhccCCCCCCEEEcCCCCCCCcCCC--------CCCCccEEEEe
Q 004022 369 -----IPQEI-AYLSSLEILYLSGNNFES-----LPAIIKQMSQLRFIHLEDFNMLQSLPE--------LPLCLKYLHLI 429 (779)
Q Consensus 369 -----~p~~l-~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~~~~~~~~--------~~~~L~~L~l~ 429 (779)
+...+ ...++|++|++++|.++. ++..+..+++|++|++++|.+....+. ..++|++|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 22222 234688999999988873 456677888999999998876543221 24688999999
Q ss_pred cCCCCC----CCC----CCCCCccEEEeeCCCCCCC--------CCCCCCCccEEeeecCcC
Q 004022 430 DCKMLQ----SLP----VLPFCLESLDLTGCNMLRS--------LPELPLCLQYLNLEDCNM 475 (779)
Q Consensus 430 ~c~~l~----~lp----~l~~~L~~L~ls~n~~l~~--------l~~~~~~L~~L~l~~c~~ 475 (779)
+|..-. .+| ..+ +|++|++++|++.+. ++....+|+.|.+.++..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCC-CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCCChhhHHHHHHHHHhCC-CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 886432 333 234 899999999987643 444446788888877643
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=5.5e-24 Score=226.15 Aligned_cols=257 Identities=14% Similarity=0.090 Sum_probs=143.6
Q ss_pred ceEEEccCCCCCCCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++.++++.+.+...+..+ .+++|++|+|++|+++.+ .|..|..+++|++|+|++|.+.... ++..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETL-DLESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-------CHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-------CHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCC
Confidence 344444444443332222 345666666666666553 3445666666666666666543322 255566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|... .++ ...+|+.|++++|.+..++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 84 ~L~Ls~n~l~-~l~-~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 84 TLDLNNNYVQ-ELL-VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp EEECCSSEEE-EEE-ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred EEECcCCccc-ccc-CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 6666665432 111 113444444444444444432 245566666666555554444455555555555555555544
Q ss_pred cchhh-hcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc
Q 004022 251 FPEIL-EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329 (779)
Q Consensus 251 ~p~~l-~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~ 329 (779)
.+..+ ..+++|++|++++|.++.++.. ..+ +
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l-----------------------------------------------~ 191 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF-----------------------------------------------A 191 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCC-----------------------------------------------T
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-ccc-----------------------------------------------c
Confidence 44433 2455555555555555544321 123 4
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc--cCChhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L 407 (779)
+|++|++++|.+.+..+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 444444444444433222 44667777777777777777777788888888888888887 66777888888888777
Q ss_pred CCCC
Q 004022 408 EDFN 411 (779)
Q Consensus 408 s~n~ 411 (779)
++++
T Consensus 270 ~~~~ 273 (317)
T 3o53_A 270 QTVK 273 (317)
T ss_dssp HHHH
T ss_pred CCch
Confidence 6443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.3e-22 Score=209.75 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=124.3
Q ss_pred CceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
+|++|++++|.++.+|.. | .+++|++|+|++|.++.+ +. .|..+..+++|++|++++|.+....+.+.++++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~---~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK--GC---CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE--EE---EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc--cC---cccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 444444444444444443 2 444445555544444421 00 1233334444455555444432211123344444
Q ss_pred cEEEecCCcCccccC----CcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCc-ccccccCCCCCCcEEecc
Q 004022 170 VTINFSYCVNLIEFP----QISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLK-RISTSFCKLRSLVTLILL 243 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~----~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~ 243 (779)
++|++++|......+ ..+.+|+.|++++|.+..+ +..+..+++|++|++++|.+.+ .+|..+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 444444443322111 1223445555555554433 3456667777777777776655 466667777777777777
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+|.+.+..|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..|..
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------- 242 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--------------------- 242 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS---------------------
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH---------------------
Confidence 777766667777777777777777777776655 4677777777777777665544433
Q ss_pred ccccCc-cccCeeeccCCCCCCc
Q 004022 323 SSVALS-NMLRSLDSSHCKGLES 344 (779)
Q Consensus 323 ~~l~~l-~~L~~L~l~~n~~~~~ 344 (779)
+..+ ++|+.|++++|++...
T Consensus 243 --~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 --LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp --CCCCCTTCCEEECTTCCEECS
T ss_pred --HHhhhccCCEEEccCCCeecc
Confidence 2233 3677777777766543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.8e-21 Score=215.93 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=194.0
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
+++++.....++... .++|+.|+|++|.++ ...+..+..+ ++|++|++++|.++.++.
T Consensus 59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQ------------------MIQADTFRHL-HHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCC------------------EECTTTTTTC-TTCCEEECCSSCCCEECT
T ss_pred EEECCCCcCccCCCC---CCCccEEECcCCcCc------------------eECHHHcCCC-CCCCEEECCCCccCCcCh
Confidence 444444444454322 258999999999885 2335567777 599999999999998874
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccC
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
.| .+++|++|+|++|+++.+ .+..|..+++|++|+|++|.+. .+|. +.++++|+.|++++|..+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVI-------PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBC-------CTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhccCcccCCEEECCCCcCCcc-------ChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 45 899999999999999875 4456888999999999999854 4443 6679999999999988777666
Q ss_pred C----cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 185 Q----ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 185 ~----~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
. .+.+|+.|++++|.+..+| .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 4 3568999999999999887 5788999999999999988888888999999999999999998888889999999
Q ss_pred CcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 261 LKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999999988865 788999999999998653
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=214.79 Aligned_cols=237 Identities=17% Similarity=0.145 Sum_probs=190.2
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
+++++.....++.... ++++.|+|++|.++ ...+..+..+ ++|++|++++|.++.++.
T Consensus 48 v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS---TNTRLLNLHENQIQ------------------IIKVNSFKHL-RHLEILQLSRNHIRTIEI 105 (440)
T ss_dssp EECCSCCCSSCCSCCC---TTCSEEECCSCCCC------------------EECTTTTSSC-SSCCEEECCSSCCCEECG
T ss_pred EEeCCCCcCcCCCCCC---CCCcEEEccCCcCC------------------eeCHHHhhCC-CCCCEEECCCCcCCccCh
Confidence 4455544445554322 67889999999884 1223566667 599999999999988874
Q ss_pred C-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCC
Q 004022 109 N-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 109 ~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
. | .+++|++|+|++|+|+.+ .+..|..+++|++|+|++|.+....+. +.++++|++|++++|..+..++.
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTI-------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSC-------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred hhccCCccCCEEECCCCcCCee-------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 3 5 789999999999999875 344688899999999999985433332 66789999999999877776654
Q ss_pred ----cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccC
Q 004022 186 ----ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261 (779)
Q Consensus 186 ----~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 261 (779)
.+.+|+.|++++|.+..+| .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+....+..+..+++|
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred chhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 3568899999999999888 47889999999999998888878889999999999999999888888889999999
Q ss_pred cEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 262 KRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
++|++++|.++.+|.. +..+++|+.|+|++|+..
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999999999988765 788999999999998753
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.7e-21 Score=203.54 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=179.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +++|++|++++|.++.+|.. + .+++|++|+|++|.++.+ .|.+|..+++|++|++++|...+
T Consensus 25 ~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 25 AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCCEEeCCCCCCcc
Confidence 556543 46999999999999999864 5 899999999999999875 57789999999999999998555
Q ss_pred CC-CC-CCCCCCCcEEEecCCcCccccCCc---CCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCcccccccC
Q 004022 159 SF-PS-NLHFVCPVTINFSYCVNLIEFPQI---SGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLKRISTSFC 232 (779)
Q Consensus 159 ~~-p~-~~~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~ 232 (779)
.+ |. +.++++|++|++++|......+.. +.+|+.|++++|.+..++.. ++.+++|++|++++|.+.+..+..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 55 43 667999999999999877655544 46899999999999988864 78999999999999987766666689
Q ss_pred CCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCC
Q 004022 233 KLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDN 297 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~ 297 (779)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++.++.. +..+++|+.|++++|++...
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999999999999888899999999999999999999998865 89999999999999987543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2e-23 Score=221.27 Aligned_cols=248 Identities=19% Similarity=0.167 Sum_probs=160.1
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCcccc-------CCCCCcEEeccCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-------NFKYLSALSFKGCQSLRSFPS 162 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-------~l~~L~~L~Ls~n~~l~~~p~ 162 (779)
.+|++|++++|.+ .+|..+ .. |++|+|++|.++.. . +|..+. ++++|++|+|++|.+.+.+|.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~---~---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAA---R---IPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEE---E---CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCC---C---cCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 4678888888888 777654 22 88888888887542 1 455444 678888888888876666665
Q ss_pred C---CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCC-----CCccEEeeeCCCCCcccccccCCC
Q 004022 163 N---LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECL-----TDLEVLDLRGCKRLKRISTSFCKL 234 (779)
Q Consensus 163 ~---~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l-----~~L~~L~L~~~~~~~~lp~~l~~l 234 (779)
. ..+++|++|++++|.. ..+|..++.+ ++|++|++++|.+.+..|..++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l---------------------~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSW---------------------ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBC---------------------SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred HHHHhcCCCccEEEccCCCC---------------------cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 2 4566666666666654 3334444443 677777777777666655667777
Q ss_pred CCCcEEecccccCCcc--cchhh--hcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 235 RSLVTLILLGCLNLEH--FPEIL--EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 235 ~~L~~L~L~~~~~~~~--~p~~l--~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
++|++|++++|...+. ++..+ ..+++|++|++++|.++.++...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------- 220 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC-------------------------------- 220 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH--------------------------------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH--------------------------------
Confidence 7777777777665543 22333 55556666666665555322100
Q ss_pred HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 311 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 311 ~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
...+..+++|++|++++|.+.+..+...+..+++|+.|++++|.++.+|..+. ++|++|+|++|+++
T Consensus 221 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 221 -----------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp -----------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred -----------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence 00112334455555555555444332224456788888888888888887766 88999999999998
Q ss_pred cCChhccCCCCCCEEEcCCCCCCC
Q 004022 391 SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 391 ~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+|. +..+++|++|++++|++.+
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CChh-HhhCCCCCEEeccCCCCCC
Confidence 8876 8888999998888887754
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=212.32 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=151.6
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
+|+.|++++|.+..++. .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666677766 67888888888888888777667778888888888888887776555668888888888888
Q ss_pred CcCCCcCCc--cCCCCCCCCEEeccCCCCCCC-CCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCC
Q 004022 268 RTPITELPS--SFENLPGLEVLFVEDCSKLDN-LPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLE 343 (779)
Q Consensus 268 ~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 343 (779)
+|.++.+|. .+..+++|+.|++++|+..+. .+..+..+++|+. .+.++......|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 888888876 578888888888888754333 3445666666655 444444334445666667777777777776543
Q ss_pred ccChhhccCCCCCcEEEecCCCCccCCcc----cCCCCCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCC
Q 004022 344 SFPRTFLLGLSAMGLLHISDYAVREIPQE----IAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 344 ~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+...+..+++|+.|++++|.++.++.. ....+.++.++++++.++ .+|..+..+++|+.|++++|.+.
T Consensus 213 -~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 213 -LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp -HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred -chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 3333344567777777777776663321 233456667777776655 35666677777777777776554
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3.4e-24 Score=248.34 Aligned_cols=366 Identities=15% Similarity=0.100 Sum_probs=202.8
Q ss_pred hhhcccCCceEeeccCccccc--ccC----CC-Ccccccccccee---ecCCCCCCCCCCceEEEccCCCCCCCCC----
Q 004022 43 AFTNMSNLRLFKFYVPKFYEI--EKL----PS-MSTEEQLSYSKV---QLPNGLDYLPKKLRYLHWDTYPLRTLPS---- 108 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i--~~l----~~-l~~~~~~~~~~~---~l~~~l~~l~~~L~~L~l~~n~l~~lp~---- 108 (779)
.+..+++|+.|+|++|.+++. ..+ +. |..+........ .++.....+ ++|++|++++|.++....
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-RKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC-TTCSEEECTTCEEECCCSHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC-CCCCEEECccccccCcchhHHH
Confidence 344889999999999987631 111 12 333333222211 111112244 488888888887654332
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccc---
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIE--- 182 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~--- 182 (779)
.. .+++|++|++++|.++.+..+. ++..+.++++|++|++++|.+.. +|. +.++++|++|+++++.....
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKD---LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHH---HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHhcCCCccEEEeeccCCCccCHHH---HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHH
Confidence 12 6778888888888886331111 45556678888888888877443 443 44578888888875433211
Q ss_pred cC---CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCCcccchhhhcC
Q 004022 183 FP---QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKM 258 (779)
Q Consensus 183 ~~---~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 258 (779)
.+ ....+|+.|.+.++....+|..+..+++|++|++++|.+..... ..+..+++|++|+++++.....++.....+
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 11 22357788888887777777777788888888888887433322 335678888888888543334455556677
Q ss_pred ccCcEeecCC-----------cCCCc--CCccCCCCCCCCEEeccCCCCCCCCCCCCCC-chhHHH-HHh---hcccCCc
Q 004022 259 EHLKRIYSDR-----------TPITE--LPSSFENLPGLEVLFVEDCSKLDNLPDNIGS-LEYLYY-ILA---AASAISQ 320 (779)
Q Consensus 259 ~~L~~L~L~~-----------n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~-l~~L~~-~~~---~~~~~~~ 320 (779)
++|++|++++ +.++. ++.....+++|+.|+++.+.+.+..+..+.. +++|+. .+. .++.++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 8888888883 45542 2333445788888888655544322222111 222222 111 1222322
Q ss_pred CC------ccccCccccCeeeccCCC--CCCccChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCc
Q 004022 321 LP------SSVALSNMLRSLDSSHCK--GLESFPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 321 lp------~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
.| ..+..+++|+.|++++|. +...........+++|+.|++++|.+++ ++..+..+++|++|+|++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 21 123345555555554433 2222111112235555555555555544 3333445555555555555544
Q ss_pred --cCChhccCCCCCCEEEcCCCCCC
Q 004022 391 --SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 391 --~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.++..+..+++|++|++++|++.
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCC
Confidence 13333444555555555555543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=5.9e-22 Score=222.84 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEE
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL 193 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L 193 (779)
+|++|+|++|.++.+ .|..|+.+++|++|+|++|.+....| +..+++|++|++++|... .++. ..+|+.|
T Consensus 35 ~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELLV-GPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCC-------CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEEE-CTTCCEE
T ss_pred CccEEEeeCCcCCCC-------CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCCC-CCCcCEE
Confidence 444444444444442 33344455555555555554322222 444455555555544322 1111 1344444
Q ss_pred EecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhh-cCccCcEeecCCcCCC
Q 004022 194 YLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE-KMEHLKRIYSDRTPIT 272 (779)
Q Consensus 194 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~n~i~ 272 (779)
++++|.+..++.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 4444444444432 345666666666666555555566666666666666666555555543 4566666666666655
Q ss_pred cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccC
Q 004022 273 ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLG 352 (779)
Q Consensus 273 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 352 (779)
.+|. ...+++|+.|+ +++|.+.+.++. +..
T Consensus 183 ~~~~-~~~l~~L~~L~-----------------------------------------------Ls~N~l~~~~~~--~~~ 212 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLD-----------------------------------------------LSSNKLAFMGPE--FQS 212 (487)
T ss_dssp EEEC-CCCCTTCCEEE-----------------------------------------------CCSSCCCEECGG--GGG
T ss_pred cccc-cccCCCCCEEE-----------------------------------------------CCCCCCCCCCHh--HcC
Confidence 5433 22344444444 444444433332 345
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc--cCChhccCCCCCCEEEcC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHLE 408 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls 408 (779)
+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 213 l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 67777777777777777777778888888888888877 667777788888777765
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=6.9e-24 Score=245.79 Aligned_cols=375 Identities=14% Similarity=0.027 Sum_probs=236.2
Q ss_pred CCCCCceEEEccCCCC----CCCCCCC-------------CCCCCcEEECCCCCCCCccCCCCcccCccccC-C-CCCcE
Q 004022 88 YLPKKLRYLHWDTYPL----RTLPSNF-------------KPKNLVELNLRCSKVEQPWEGEKACVPSSIQN-F-KYLSA 148 (779)
Q Consensus 88 ~l~~~L~~L~l~~n~l----~~lp~~~-------------~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~-l-~~L~~ 148 (779)
.+ ++|++|++++++. ..+|..+ .+++|++|+|++|.++.. .+..+.. + .+|++
T Consensus 71 ~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-------~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 71 RF-PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-------DLDRLAKARADDLET 142 (592)
T ss_dssp HC-TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-------HHHHHHHHHGGGCCE
T ss_pred hC-CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH-------HHHHHHHhccccCcE
Confidence 44 3799999988653 2333222 478899999998877642 3344444 3 34999
Q ss_pred EeccCCCCCC--CCCCC-CCCCCCcEEEecCCcCcc-------ccCCcCCCccEEEecCcCCc-----ccCcccCCCCCc
Q 004022 149 LSFKGCQSLR--SFPSN-LHFVCPVTINFSYCVNLI-------EFPQISGKVTRLYLGQSAIE-----EVPSSIECLTDL 213 (779)
Q Consensus 149 L~Ls~n~~l~--~~p~~-~~l~~L~~L~L~~~~~l~-------~~~~~~~~L~~L~L~~n~i~-----~lp~~l~~l~~L 213 (779)
|+|++|.... .++.+ .++++|++|++++|.... .++...++|+.|++++|.+. .++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 9998886321 12222 257889999999887532 23445678888888888875 344455677888
Q ss_pred cEEeeeCCCCCcccccccCCCCCCcEEecccccCC---cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEecc
Q 004022 214 EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL---EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVE 290 (779)
Q Consensus 214 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~---~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 290 (779)
++|++++|...+ +|..+..+++|++|+++.+... ...+..+..+++|+.|+++++....+|..+..+++|++|+++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 888888877544 5666777888888888764333 233455667788888888887767777777788888888888
Q ss_pred CCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecC-------
Q 004022 291 DCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD------- 363 (779)
Q Consensus 291 ~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~------- 363 (779)
+|.+.... ++..+..+++|+.|+++++ +...........+++|++|++++
T Consensus 302 ~~~l~~~~----------------------~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 302 YALLETED----------------------HCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp TCCCCHHH----------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred CCcCCHHH----------------------HHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 87632211 1122455677778777732 22221122234567788888873
Q ss_pred ----CCCcc--CCcccCCCCCccEEEEecCCCcc-CChhccC-CCCCCEEEcCC---CCCCCcCCC---------CCCCc
Q 004022 364 ----YAVRE--IPQEIAYLSSLEILYLSGNNFES-LPAIIKQ-MSQLRFIHLED---FNMLQSLPE---------LPLCL 423 (779)
Q Consensus 364 ----~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls~---n~~~~~~~~---------~~~~L 423 (779)
+.+++ ++.....+++|++|+++.|+++. .+..+.. +++|+.|++++ ++..+..|. ..++|
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 34443 23333456788888887777762 2333433 77788888863 223333221 24678
Q ss_pred cEEEEecCCC-CC-----CCCCCCCCccEEEeeCCCCCCC-CC---CCCCCccEEeeecCcCCcc--cC---CCCCCccE
Q 004022 424 KYLHLIDCKM-LQ-----SLPVLPFCLESLDLTGCNMLRS-LP---ELPLCLQYLNLEDCNMLRS--LP---ELPLCLQL 488 (779)
Q Consensus 424 ~~L~l~~c~~-l~-----~lp~l~~~L~~L~ls~n~~l~~-l~---~~~~~L~~L~l~~c~~L~~--l~---~~~~sL~~ 488 (779)
++|+++.|.. +. .+.....+|++|++++|.+.+. ++ ...++|++|++++|+ +.. ++ ..+++|+.
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe
Confidence 8888876653 11 1111123788888888876541 11 234788888888887 331 22 23578889
Q ss_pred EEEecCC
Q 004022 489 LTVRNCN 495 (779)
Q Consensus 489 L~i~~C~ 495 (779)
|++++|+
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 9999887
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.8e-22 Score=213.82 Aligned_cols=245 Identities=15% Similarity=0.160 Sum_probs=170.4
Q ss_pred hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC--CCCCC--------C
Q 004022 42 RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT--LPSNF--------K 111 (779)
Q Consensus 42 ~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~--lp~~~--------~ 111 (779)
+.+..+++|+.|++++|.+ .+|..+. ..|++|++++|.++. +|..+ .
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--------------------~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 93 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--------------------ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLG 93 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--------------------CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHT
T ss_pred EEEccCCCceeEeeccccc--------------------ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcC
Confidence 3567788899999998876 3343332 348888888888854 44433 4
Q ss_pred CCCCcEEECCCCCCCCccCCCCcccCccc--cCCCCCcEEeccCCCCCCCCCC-CCCC-----CCCcEEEecCCcCcccc
Q 004022 112 PKNLVELNLRCSKVEQPWEGEKACVPSSI--QNFKYLSALSFKGCQSLRSFPS-NLHF-----VCPVTINFSYCVNLIEF 183 (779)
Q Consensus 112 l~~L~~L~L~~n~i~~l~~g~~~~lp~~~--~~l~~L~~L~Ls~n~~l~~~p~-~~~l-----~~L~~L~L~~~~~l~~~ 183 (779)
+++|++|+|++|+++.. +|..+ ..+++|++|+|++|.+... |. +..+ ++|++|++++|..
T Consensus 94 l~~L~~L~L~~n~l~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l---- 161 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT-------APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS---- 161 (312)
T ss_dssp TSCCCEEEEEEEBCBSC-------CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC----
T ss_pred cCCccEEEccCCcccch-------hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC----
Confidence 88999999999998854 67665 7899999999999986555 54 2233 6666666666654
Q ss_pred CCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcc--ccccc--CCCCCCcEEecccccCCc--ccc-hhh
Q 004022 184 PQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKR--ISTSF--CKLRSLVTLILLGCLNLE--HFP-EIL 255 (779)
Q Consensus 184 ~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L~~L~L~~~~~~~--~~p-~~l 255 (779)
..++ ..++.+++|++|++++|++.+. ++..+ ..+++|++|++++|.+.+ .++ ..+
T Consensus 162 -----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 162 -----------------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp -----------------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred -----------------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 4444 6788899999999999987665 33344 789999999999988763 222 445
Q ss_pred hcCccCcEeecCCcCCCcCC--ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 256 EKMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
..+++|++|++++|.++..+ ..+..+++|+.|++++|.+. .+|. .+.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-----------------------~~~------- 273 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-----------------------GLP------- 273 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-----------------------SCC-------
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh-----------------------hcc-------
Confidence 67789999999999888754 33555677777777776543 2222 111
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
++|+.|++++|.++++|. +..+++|++|++++|.++
T Consensus 274 --------------------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --------------------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --------------------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred --------------------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 455666666666666655 666777777777777665
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-21 Score=207.50 Aligned_cols=253 Identities=12% Similarity=-0.024 Sum_probs=196.6
Q ss_pred ecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC
Q 004022 30 DLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN 109 (779)
Q Consensus 30 d~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~ 109 (779)
|++......+....+..+++|+.|++++|.+++ ..|..+..+ ++|++|++++|.++.++..
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~ 76 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ------------------ISAADLAPF-TKLELLNLSSNVLYETLDL 76 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC------------------CCHHHHTTC-TTCCEEECTTSCCEEEEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCc------------------CCHHHhhCC-CcCCEEECCCCcCCcchhh
Confidence 344444444555677788899999999998851 123456666 5999999999999877763
Q ss_pred CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCc---
Q 004022 110 FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQI--- 186 (779)
Q Consensus 110 ~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~--- 186 (779)
..+++|++|++++|+++.+ + ..++|++|++++|.+....+ ..+++|++|++++|......+..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l--------~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL--------L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE--------E----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGG
T ss_pred hhcCCCCEEECcCCccccc--------c----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhc
Confidence 3889999999999998863 2 44899999999998554333 23788999999999876654433
Q ss_pred CCCccEEEecCcCCcccC-ccc-CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEe
Q 004022 187 SGKVTRLYLGQSAIEEVP-SSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264 (779)
Q Consensus 187 ~~~L~~L~L~~n~i~~lp-~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 264 (779)
+.+|+.|++++|.+..++ ..+ ..+++|++|++++|.+... +. ...+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 467999999999998764 444 4789999999999986554 43 4459999999999988775 45558999999999
Q ss_pred ecCCcCCCcCCccCCCCCCCCEEeccCCCCC-CCCCCCCCCchhHHH-HHhhcccC
Q 004022 265 YSDRTPITELPSSFENLPGLEVLFVEDCSKL-DNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 265 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
++++|.++.+|..+..+++|+.|++++|++. +.+|..+..+++|+. .+.++..+
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 9999999999999999999999999999987 667777778888888 55544433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.3e-21 Score=218.00 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=164.3
Q ss_pred CCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 168 (779)
++|++|++++|.++.++. .| .+++|++|+|++|.++.. ++ ++.+++|++|+|++|.+. .+|. .++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~-l~~l~~L~~L~Ls~N~l~-~l~~---~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--------LD-LESLSTLRTLDLNNNYVQ-ELLV---GPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE--------EE-CTTCTTCCEEECCSSEEE-EEEE---CTT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC--------cc-cccCCCCCEEEecCCcCC-CCCC---CCC
Confidence 489999999999998874 45 899999999999999863 33 889999999999999843 3432 389
Q ss_pred CcEEEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccC-CCCCCcEEeccccc
Q 004022 169 PVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCL 246 (779)
Q Consensus 169 L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~ 246 (779)
|+.|++++|......+..+.+|+.|++++|.+..+ |..++.+++|++|++++|.+.+..|..+. .+++|++|+|++|.
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999998887777889999999999999877 45788999999999999999888888776 79999999999998
Q ss_pred CCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 247 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
+.+. +. ...+++|++|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 7765 32 34689999999999999999988888999999999987654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.7e-19 Score=184.91 Aligned_cols=206 Identities=23% Similarity=0.204 Sum_probs=163.4
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
+|+.|++++|.+..++. .+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666677765 78888999999999988776666678889999999999988888777888899999999999
Q ss_pred CcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC
Q 004022 268 RTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 346 (779)
Q Consensus 268 ~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 346 (779)
+|.++.++. .++.+++|++|++++|.+.+. .+|..+..+++|++|++++|.+.+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcCCH
Confidence 999988776 588899999999998765431 135567778889999999998877544
Q ss_pred hhhccCCCCCc----EEEecCCCCccCCcccCCCCCccEEEEecCCCccCChh-ccCCCCCCEEEcCCCCCCCcCC
Q 004022 347 RTFLLGLSAMG----LLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAI-IKQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 347 ~~~~~~l~~L~----~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
.. +..+++|+ .|++++|.+..++.......+|++|++++|.++.+|.. +..+++|+.|++++|++....+
T Consensus 167 ~~-~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GG-GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HH-hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 32 33444444 89999999999877766667899999999999988854 6889999999999998765443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=4.8e-19 Score=184.03 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=118.0
Q ss_pred eecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC
Q 004022 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL 157 (779)
Q Consensus 80 ~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l 157 (779)
..+|..+ |.+|++|++++|.++.++. .+ .+++|++|++++|+++.+ .+..|.++++|++|+|++|.+.
T Consensus 20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-------CHHHccCCcCCCEEECCCCccC
Confidence 4566544 4689999999999988876 45 889999999999998875 4557888999999999998865
Q ss_pred CCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCc-ccccccCCC
Q 004022 158 RSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLK-RISTSFCKL 234 (779)
Q Consensus 158 ~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l 234 (779)
...+. +.++++|++|++++|... .++. .++.+++|++|++++|.+.. .+|..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLA---------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC---------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ccChhhhcCCccccEEECCCCCcc---------------------ccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 54443 566888888888877654 2222 35555556666665555443 235555555
Q ss_pred CCCcEEecccccCCcccchhhhcCccCc----EeecCCcCCCcCCccCCCCCCCCEEeccCCC
Q 004022 235 RSLVTLILLGCLNLEHFPEILEKMEHLK----RIYSDRTPITELPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 235 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~----~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~ 293 (779)
++|++|++++|.+.+..+..+..+++|+ +|++++|.++.++.......+|+.|++++|.
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 5666666655555554444454444444 5555555555555444444455555555544
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7.5e-19 Score=183.65 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=171.3
Q ss_pred CCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCC
Q 004022 87 DYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHF 166 (779)
Q Consensus 87 ~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l 166 (779)
..+ .+|++++++++.++.+|..+. +++++|+|++|.++.+ .+..|..+++|++|+|++|.+ +.++....+
T Consensus 7 ~~l-~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l 76 (290)
T 1p9a_G 7 SKV-ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTF-------SLATLMPYTRLTQLNLDRAEL-TKLQVDGTL 76 (290)
T ss_dssp ECS-TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEE-------EGGGGTTCTTCCEEECTTSCC-CEEECCSCC
T ss_pred ccc-CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCcc-------CHHHhhcCCCCCEEECCCCcc-CcccCCCCC
Confidence 344 489999999999999998764 7899999999999875 567889999999999999984 455656789
Q ss_pred CCCcEEEecCCcCccccCCc---CCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEec
Q 004022 167 VCPVTINFSYCVNLIEFPQI---SGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 242 (779)
++|++|++++|... .+|.. +.+|+.|++++|.+..+|. .+..+++|++|++++|++....+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 99999999999754 55543 4689999999999999884 6899999999999999987776667888999999999
Q ss_pred ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 243 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
++|.+....+..+..+++|++|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99988876667788999999999999999999999999999999999998764
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=9.3e-19 Score=182.96 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=147.2
Q ss_pred CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 268 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 268 (779)
+++.++++++.+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ . +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCC
Confidence 44555555555566766554 577778888777766666677777888888888776654332 2 6778888888888
Q ss_pred cCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 269 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 269 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
|.++.+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~- 142 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-----------------------GALRGLGELQELYLKGNELKTLPPG- 142 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-----------------------STTTTCTTCCEEECTTSCCCCCCTT-
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCH-----------------------HHHcCCCCCCEEECCCCCCCccChh-
Confidence 8888888878888888888888876543322 3355677788888888887765443
Q ss_pred hccCCCCCcEEEecCCCCccCCcc-cCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQE-IAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|+++.+|..+..+++|+.|++++|++.
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 366788999999999999887765 57789999999999999999988888889999888888764
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=2.2e-19 Score=186.18 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=94.1
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+|+.|++++|.++.++....+++|++|++++|.++. + ..+..+++|++|++++|.+....+. +.++++|+
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 455555555555444433344555555555555443 1 2344555555555555543322222 23455555
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|... .++ ..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 113 ~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 113 ELVLVENQLQ---------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp EEECTTSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcCC---------------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 5555554432 222 223444555555555554443333334445555555555555444
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~ 327 (779)
..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|++.+. ++.|+. ....+...+.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 4444445555555555555555554443 45555556666555544332 223444 33344444455555444
Q ss_pred c
Q 004022 328 S 328 (779)
Q Consensus 328 l 328 (779)
+
T Consensus 245 ~ 245 (272)
T 3rfs_A 245 V 245 (272)
T ss_dssp B
T ss_pred c
Confidence 3
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2e-18 Score=178.70 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=127.8
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.++++++.++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555566665443 45666666666655444445666666666666666655444445566667777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.+|.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~Ls~n~l~~~~~~- 151 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------------------RVFDSLTKLTYLSLGYNELQSLPKG- 151 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------HHhCcCcCCCEEECCCCcCCccCHh-
Confidence 76666543 5666777777776665433222 2234556667777777766554332
Q ss_pred hccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+..+++|+.|++++|.++.++. .+..+++|++|+|++|.++.+|. .+..+++|+.|++++|++.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 25677888888888888877654 46778888888888888887774 4777888888888877654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.4e-18 Score=178.06 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=145.0
Q ss_pred CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCC
Q 004022 49 NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVE 126 (779)
Q Consensus 49 ~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~ 126 (779)
+++.++++++.++ .+|..+ +.+|++|++++|.++.+|. .| .+++|++|+|++|.++
T Consensus 17 ~~~~l~~~~~~l~-------------------~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-------------------AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp TTTEEECTTSCCS-------------------SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCCC-------------------ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 4667777777663 344433 3467777777777777765 34 6777777777777777
Q ss_pred CccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 127 QPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 127 ~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
.+ .+..|..+++|++|++++|.+....+. +.++++|++|++++|.. ..++.
T Consensus 75 ~i-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------------~~~~~ 126 (270)
T 2o6q_A 75 TL-------PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---------------------KSLPP 126 (270)
T ss_dssp CC-------CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC---------------------CCCCT
T ss_pred ee-------ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc---------------------CeeCH
Confidence 64 233456677777777777764433222 34466666666666544 55544
Q ss_pred -ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPG 283 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~ 283 (779)
.++.+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.+|.. +..+++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 568899999999999987766555688899999999999988877777788999999999999999988875 888999
Q ss_pred CCEEeccCCCCCCC
Q 004022 284 LEVLFVEDCSKLDN 297 (779)
Q Consensus 284 L~~L~L~~~~~~~~ 297 (779)
|+.|++++|+....
T Consensus 207 L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 207 LKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCBCCS
T ss_pred CCEEEecCCCeeCC
Confidence 99999999876543
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.5e-22 Score=234.59 Aligned_cols=374 Identities=15% Similarity=0.092 Sum_probs=230.7
Q ss_pred CCceEEEccCCCC-CC---CCCC------------C-CCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEecc
Q 004022 91 KKLRYLHWDTYPL-RT---LPSN------------F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFK 152 (779)
Q Consensus 91 ~~L~~L~l~~n~l-~~---lp~~------------~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls 152 (779)
++|++|++++++. .. .|.. + .+++|++|+|+++.++.. .+..+. .+++|++|+|+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-------~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-------CLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-------HHHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-------HHHHHHHhCCCCcEEeCC
Confidence 4789999988762 22 2221 1 567899999999887643 334443 68899999999
Q ss_pred CCCCCCC--CCCCC-CCCCCcEEEecCCcCcc-------ccCCcCCCccEEEecCcC--C--cccCcccCCCCCccEEee
Q 004022 153 GCQSLRS--FPSNL-HFVCPVTINFSYCVNLI-------EFPQISGKVTRLYLGQSA--I--EEVPSSIECLTDLEVLDL 218 (779)
Q Consensus 153 ~n~~l~~--~p~~~-~l~~L~~L~L~~~~~l~-------~~~~~~~~L~~L~L~~n~--i--~~lp~~l~~l~~L~~L~L 218 (779)
+|...+. ++.+. ++++|++|++++|.... .++....+|+.|+++++. + ..++..+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 8853433 44433 58899999999887332 333455688888888876 2 122223345688889998
Q ss_pred eCCCCCcccccccCCCCCCcEEecccccC------CcccchhhhcCccCcEe-ecCCcCCCcCCccCCCCCCCCEEeccC
Q 004022 219 RGCKRLKRISTSFCKLRSLVTLILLGCLN------LEHFPEILEKMEHLKRI-YSDRTPITELPSSFENLPGLEVLFVED 291 (779)
Q Consensus 219 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~------~~~~p~~l~~l~~L~~L-~L~~n~i~~lp~~l~~l~~L~~L~L~~ 291 (779)
++|...+.++..+..+++|++|+++.+.. ...++..+.++++|+.| .+.+.....++..+..+++|++|++++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccC
Confidence 88865666777777788888888766542 12344567778888888 555544445665555678888888888
Q ss_pred CCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecC--------
Q 004022 292 CSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-------- 363 (779)
Q Consensus 292 ~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~-------- 363 (779)
|.+.... ++..+..+++|++|++++| +...........+++|+.|++.+
T Consensus 299 ~~l~~~~----------------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 299 ATVQSYD----------------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp CCCCHHH----------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred CCCCHHH----------------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 7632110 1112345677788888777 22111111123467788887743
Q ss_pred -CCCcc--CCcccCCCCCccEEEEecCCCccC-Chhc-cCCCCCCEEEcC-----CCCCCCcCCC---------CCCCcc
Q 004022 364 -YAVRE--IPQEIAYLSSLEILYLSGNNFESL-PAII-KQMSQLRFIHLE-----DFNMLQSLPE---------LPLCLK 424 (779)
Q Consensus 364 -~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls-----~n~~~~~~~~---------~~~~L~ 424 (779)
+.+++ +......+++|++|.+..|.++.. +..+ ..+++|+.|+++ +|...+..|. ..++|+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 23332 111122367788887777777632 2223 357788888887 3344443221 236788
Q ss_pred EEEEecCCCCCC-----CCCCCCCccEEEeeCCCCCCCCC----CCCCCccEEeeecCcCCcc----cCCCCCCccEEEE
Q 004022 425 YLHLIDCKMLQS-----LPVLPFCLESLDLTGCNMLRSLP----ELPLCLQYLNLEDCNMLRS----LPELPLCLQLLTV 491 (779)
Q Consensus 425 ~L~l~~c~~l~~-----lp~l~~~L~~L~ls~n~~l~~l~----~~~~~L~~L~l~~c~~L~~----l~~~~~sL~~L~i 491 (779)
+|++++ .+.. +.....+|++|++++|.+.+... ..+++|++|++++|+.-.. +...+++|+.|++
T Consensus 436 ~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 436 RLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp EEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred EEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 888855 2221 11112378888888888644322 2247899999999875221 1123578999999
Q ss_pred ecCCC
Q 004022 492 RNCNR 496 (779)
Q Consensus 492 ~~C~~ 496 (779)
++|+.
T Consensus 514 ~~~~~ 518 (594)
T 2p1m_B 514 SSCSV 518 (594)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99974
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=9.6e-19 Score=177.61 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=118.1
Q ss_pred ccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCC-CCcccccccCCCCCCcEEeccc-ccCCcccchhhh
Q 004022 180 LIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCK-RLKRISTSFCKLRSLVTLILLG-CLNLEHFPEILE 256 (779)
Q Consensus 180 l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~l~ 256 (779)
++.+|....+++.|++++|.+..+|. .++.+++|++|++++|+ +....+..+.++++|++|++++ |.+....+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 44444433356666777777777776 67788888888888886 4444444677888888888887 565555556777
Q ss_pred cCccCcEeecCCcCCCcCCccCCCCCCCC---EEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccC-
Q 004022 257 KMEHLKRIYSDRTPITELPSSFENLPGLE---VLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLR- 332 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~---~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~- 332 (779)
.+++|++|++++|.++.+|. +..+++|+ .|++++|.....+|. ..+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------~~~~~l~~L~~ 159 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------NAFQGLCNETL 159 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------TTTTTTBSSEE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc----------------------ccccchhccee
Confidence 88888888888888887776 66677776 777777622222211 1233445555
Q ss_pred eeeccCCCCCCccChhhccCCCCCcEEEecCCC-CccCC-cccCCC-CCccEEEEecCCCccCChhccCCCCCCEEEcCC
Q 004022 333 SLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIP-QEIAYL-SSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409 (779)
Q Consensus 333 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~~p-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 409 (779)
.|++++|.+.. ++...+.. ++|+.|++++|. ++.++ ..+..+ ++|+.|++++|+++.+|.. .+++|+.|++++
T Consensus 160 ~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred EEEcCCCCCcc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 55555555542 22222222 445555555552 44432 234444 4555555555555544432 344444444443
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=185.14 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc--cc--hhhhcCccCcEeecCCcCCCcCCcc----CCC
Q 004022 209 CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH--FP--EILEKMEHLKRIYSDRTPITELPSS----FEN 280 (779)
Q Consensus 209 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p--~~l~~l~~L~~L~L~~n~i~~lp~~----l~~ 280 (779)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.++.++.. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 455555555555555444445555555555555555554331 11 1123455555555555555443331 233
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|++|++++|.+.+..|..+.. +..+++|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~---------------------------------------------~~~~~~L~~L~ 257 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPR---------------------------------------------CMWSSALNSLN 257 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSS---------------------------------------------CCCCTTCCCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHh---------------------------------------------ccCcCcCCEEE
Confidence 444444444444443332221111 11235666666
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
+++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|++..
T Consensus 258 Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 258 LSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 66666666666553 677777777777777665 5677778887777777643
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.6e-18 Score=184.88 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVT 171 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~ 171 (779)
++++.+++.++++|..+ ++++++|+|++|+|+.+ -+.+|.++++|++|+|++|++.+.+|. +.++++|++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i-------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVI-------QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEE-------CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCc-------CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 57888999999999877 47899999999999984 234688999999999999997776664 456776665
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+...++ |.+..+ |..+..+++|++|++++|.+....+..+....++..|++.++.....
T Consensus 84 ~l~~~~--------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 84 IRIEKA--------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EEEEEE--------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred hhcccC--------------------CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 433332 223555 45678888999999998887665555566667788888877655554
Q ss_pred cc-hhhhcCc-cCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 251 FP-EILEKME-HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 251 ~p-~~l~~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
++ ..+..+. .++.|++++|.++++|.......+|+.|++.+++..+.+|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence 44 3455543 5778888888888887776666677777776655544443
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=6e-18 Score=175.28 Aligned_cols=222 Identities=17% Similarity=0.129 Sum_probs=166.9
Q ss_pred CceEeeccCccccccc---CCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCC
Q 004022 50 LRLFKFYVPKFYEIEK---LPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVE 126 (779)
Q Consensus 50 Lr~L~l~~n~l~~i~~---l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~ 126 (779)
+..+++..+.++++.. ++.+..+.........+ .++..+ ++|++|++++|.++.++....+++|++|++++|.++
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~l~~l-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYL-PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-TTGGGC-TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCcccc-cccccC-CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC
Confidence 3445566665554332 34444444443332333 356667 499999999999988875458899999999999998
Q ss_pred CccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 127 QPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 127 ~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
.+ .+..|..+++|++|++++|.+....+. +.++++|++|++++|.. ..++.
T Consensus 99 ~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------------------~~~~~ 150 (272)
T 3rfs_A 99 SL-------PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---------------------QSLPK 150 (272)
T ss_dssp CC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---------------------CCCCT
T ss_pred cc-------ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc---------------------CccCH
Confidence 75 455678899999999999986544444 45688888888888754 44443
Q ss_pred -ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGL 284 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 284 (779)
.++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+++|
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 224 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 224 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTT
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHH
Confidence 4678899999999999877766666788999999999999888877778889999999999999765 446788
Q ss_pred CEEeccCCCCCCCCCCCCCCchh
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEY 307 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~ 307 (779)
+.|+++.|.+.+.+|.+++.+..
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHhCCCcccCcccccCC
Confidence 88999999999999988876654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.6e-18 Score=181.31 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=136.1
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.++.+++|+.|++++|.++ .++ ++..+ ++|++|++++|.++.++....+++|++|+|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-------------------~l~-~~~~l-~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-------------------TIE-GVQYL-NNLIGLELKDNQITDLAPLKNLTKITELELSG 94 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCCSCCEEECCS
T ss_pred cHHHcCCcCEEEeeCCCcc-------------------Cch-hhhcc-CCCCEEEccCCcCCCChhHccCCCCCEEEccC
Confidence 3567888899999888774 344 45566 48899999999888888733888899999998
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. ++ .+..+++|++|++++|.+ +.++.+..+++|++|++++|.. ..
T Consensus 95 n~l~~--------~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l---------------------~~ 143 (308)
T 1h6u_A 95 NPLKN--------VS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQI---------------------TN 143 (308)
T ss_dssp CCCSC--------CG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCC---------------------CC
T ss_pred CcCCC--------ch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCcc---------------------Cc
Confidence 88876 32 577888888888888874 4566677778888888877754 33
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
++. ++.+++|++|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..++
T Consensus 144 ~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 144 ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence 333 5566667777777665443 333 6666777777777666544322 5666777777777777776663 66677
Q ss_pred CCCEEeccCCCCC
Q 004022 283 GLEVLFVEDCSKL 295 (779)
Q Consensus 283 ~L~~L~L~~~~~~ 295 (779)
+|+.|++++|++.
T Consensus 218 ~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 218 NLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEEEEEEEEE
T ss_pred CCCEEEccCCeee
Confidence 7777777776653
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=6.4e-18 Score=178.32 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=159.2
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++|++|++++|.++.+|....+++|++|+|++|.++. ++. +..+++|++|+|++|. ++.++.+..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--------~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--------LAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--------Chh-HccCCCCCEEEccCCc-CCCchhhcCCCCCC
Confidence 5899999999999999854489999999999999987 444 8899999999999998 45567777788888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+.
T Consensus 111 ~L~l~~n~l---------------------~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 111 TLDLTSTQI---------------------TDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp EEECTTSCC---------------------CCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC
T ss_pred EEECCCCCC---------------------CCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC
Confidence 888887764 44553 88899999999999986654 43 88899999999999977654
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
+. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+......+.+...|..
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEE
T ss_pred -hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCee
Confidence 33 8899999999999999999886 8899999999999998876543 78888888833344444555543
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.1e-21 Score=227.23 Aligned_cols=365 Identities=13% Similarity=0.107 Sum_probs=215.2
Q ss_pred hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCC-CCCCCceEEEccCC-CCCC--CCCCC-CCCCCc
Q 004022 42 RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLD-YLPKKLRYLHWDTY-PLRT--LPSNF-KPKNLV 116 (779)
Q Consensus 42 ~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~n-~l~~--lp~~~-~l~~L~ 116 (779)
..+..+++|+.|++++|.+++ ..+..+. .+ ++|++|++++| .++. ++..+ .+++|+
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~------------------~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTD------------------DCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCH------------------HHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred HHHHhCCCCCeEEeeCcEEcH------------------HHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 345688999999999998752 1111121 24 48888888888 4443 44444 678888
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-----C-CCCCCCCcEEEecCCcCccccCC---cC
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-----S-NLHFVCPVTINFSYCVNLIEFPQ---IS 187 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-----~-~~~l~~L~~L~L~~~~~l~~~~~---~~ 187 (779)
+|+|++|.++...... ++.....+++|++|++++|. ..+. . ...+++|+.|++++|.....++. ..
T Consensus 160 ~L~L~~~~i~~~~~~~---l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHW---LSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp EEECTTCEEECCCGGG---GGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred EEeCcCCccCCcchHH---HHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 8888888866531000 23333467788888888876 2222 1 12368888888888855444432 34
Q ss_pred CCccEEEecC-------cCCcccCcccCCCCCccEE-eeeCCCCCcccccccCCCCCCcEEecccccCCcc-cchhhhcC
Q 004022 188 GKVTRLYLGQ-------SAIEEVPSSIECLTDLEVL-DLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH-FPEILEKM 258 (779)
Q Consensus 188 ~~L~~L~L~~-------n~i~~lp~~l~~l~~L~~L-~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l 258 (779)
.+|+.|++.. +.+..++..+.++++|+.| .+.+.. ...++..+..+++|++|++++|.+... +...+..+
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 5788887443 3345556666777777777 333322 233444444567777777777764332 23335567
Q ss_pred ccCcEeecCCcCCC--cCCccCCCCCCCCEEeccCCC--------CCCC-CCCCC-CCchhHHHHHhhcccCCc-CCccc
Q 004022 259 EHLKRIYSDRTPIT--ELPSSFENLPGLEVLFVEDCS--------KLDN-LPDNI-GSLEYLYYILAAASAISQ-LPSSV 325 (779)
Q Consensus 259 ~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~--------~~~~-lp~~l-~~l~~L~~~~~~~~~~~~-lp~~l 325 (779)
++|++|+++++ +. .++.....+++|+.|++.+|. ..+. ....+ ..+++|+.+...++.+.. .+..+
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 77777777776 33 122223346777777774431 1110 00000 011222221112222221 11222
Q ss_pred -cCccccCeeecc--C---CCCCCccC-h----hhccCCCCCcEEEecCCCCcc-CCcccC-CCCCccEEEEecCCCcc-
Q 004022 326 -ALSNMLRSLDSS--H---CKGLESFP-R----TFLLGLSAMGLLHISDYAVRE-IPQEIA-YLSSLEILYLSGNNFES- 391 (779)
Q Consensus 326 -~~l~~L~~L~l~--~---n~~~~~~~-~----~~~~~l~~L~~L~Ls~~~l~~-~p~~l~-~l~~L~~L~Ls~n~l~~- 391 (779)
..+++|+.|+++ + |...+..+ . ..+..+++|+.|++++ .+++ .+..+. .+++|+.|+|++|.++.
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 257899999999 3 33333211 1 1145788999999987 5554 233333 37899999999999873
Q ss_pred -CChhccCCCCCCEEEcCCCCCCCcCC----CCCCCccEEEEecCCC
Q 004022 392 -LPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKM 433 (779)
Q Consensus 392 -lp~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~L~~L~l~~c~~ 433 (779)
++.....+++|+.|++++|++..... ...++|++|++++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22333679999999999999843222 2357899999999975
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=3.7e-19 Score=190.50 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=119.9
Q ss_pred CCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC
Q 004022 144 KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR 223 (779)
Q Consensus 144 ~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (779)
++++.|++++|.+....+....+++|++|++++|.... ..++..+..+++|++|++++|.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~-------------------~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-------------------STLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-------------------HHHHHHHTTBCCCSEEECTTCBC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-------------------HHHHHHHhhCCCCCEEeCcCccc
Confidence 55555555555544444444555556666665554321 11444555566666666666665
Q ss_pred CcccccccCCCCCCcEEeccccc-CCc-ccchhhhcCccCcEeecCCc-CCCc--CCccCCCCC-CCCEEeccCCC--CC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCL-NLE-HFPEILEKMEHLKRIYSDRT-PITE--LPSSFENLP-GLEVLFVEDCS--KL 295 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~-~~~-~~p~~l~~l~~L~~L~L~~n-~i~~--lp~~l~~l~-~L~~L~L~~~~--~~ 295 (779)
....+..+..+++|++|++++|. ..+ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|. +.
T Consensus 131 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 55555556666666666666663 222 24555666666666666666 5553 444455566 66666666652 11
Q ss_pred CCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCC-CCccChhhccCCCCCcEEEecCCC-Ccc-CCcc
Q 004022 296 DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG-LESFPRTFLLGLSAMGLLHISDYA-VRE-IPQE 372 (779)
Q Consensus 296 ~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~Ls~~~-l~~-~p~~ 372 (779)
. ..++..+..+++|+.|++++|.. ....+. .+..+++|+.|++++|. +.. ....
T Consensus 211 ~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 211 K----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp H----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred H----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 0 11222334455666666666652 222222 23455666666666663 211 1123
Q ss_pred cCCCCCccEEEEecCCCccCChhccCC-CCCCEEEcCCCCCCCcCCCCC
Q 004022 373 IAYLSSLEILYLSGNNFESLPAIIKQM-SQLRFIHLEDFNMLQSLPELP 420 (779)
Q Consensus 373 l~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~Ls~n~~~~~~~~~~ 420 (779)
+..+++|++|++++| ++. ..+..+ .+|+.|++++|.+.+..|...
T Consensus 268 l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 555666667766666 221 112222 224444566666666555433
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.5e-17 Score=168.84 Aligned_cols=194 Identities=14% Similarity=0.158 Sum_probs=134.8
Q ss_pred CCceEeeccCcccccccCCCCccccccccceeecCC-CCCCCCCCceEEEccCCC-CCCCCCC-C-CCCCCcEEECCC-C
Q 004022 49 NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN-GLDYLPKKLRYLHWDTYP-LRTLPSN-F-KPKNLVELNLRC-S 123 (779)
Q Consensus 49 ~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~n~-l~~lp~~-~-~l~~L~~L~L~~-n 123 (779)
+|+.|++++|.++ .++. .+..+ ++|++|++++|. ++.+|.. | .+++|++|++++ |
T Consensus 32 ~l~~L~l~~n~l~-------------------~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 32 STQTLKLIETHLR-------------------TIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TCCEEEEESCCCS-------------------EECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cccEEEEeCCcce-------------------EECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 6777777777664 3333 34445 477777777775 7777653 4 677777777776 7
Q ss_pred CCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc---EEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 124 KVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV---TINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 124 ~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~---~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
+++.+ .+..|..+++|++|++++|.+ +.+|.+..+++|+ +|++++|. .+
T Consensus 92 ~l~~i-------~~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~--------------------~l 143 (239)
T 2xwt_C 92 NLTYI-------DPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP--------------------YM 143 (239)
T ss_dssp TCCEE-------CTTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCT--------------------TC
T ss_pred CeeEc-------CHHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCc--------------------ch
Confidence 77664 334566777777777777763 3356555555555 55555552 44
Q ss_pred cccCc-ccCCCCCcc-EEeeeCCCCCcccccccCCCCCCcEEeccccc-CCcccchhhhcC-ccCcEeecCCcCCCcCCc
Q 004022 201 EEVPS-SIECLTDLE-VLDLRGCKRLKRISTSFCKLRSLVTLILLGCL-NLEHFPEILEKM-EHLKRIYSDRTPITELPS 276 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~-~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~-~~~~~p~~l~~l-~~L~~L~L~~n~i~~lp~ 276 (779)
..+|. .+..+++|+ +|++++|.+. .+|......++|++|++++|. +....+..+..+ ++|++|++++|.++.+|.
T Consensus 144 ~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 66665 477888999 9999988866 555543334889999999985 555556778888 999999999999999887
Q ss_pred cCCCCCCCCEEeccCCC
Q 004022 277 SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~ 293 (779)
. .+++|+.|+++++.
T Consensus 223 ~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 K--GLEHLKELIARNTW 237 (239)
T ss_dssp T--TCTTCSEEECTTC-
T ss_pred h--HhccCceeeccCcc
Confidence 5 78899999988763
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=5.2e-17 Score=166.08 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=143.4
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
..++++++++.++.+|..+. ++|+.|+|++|+++.+ .+..|.++++|++|+|++|.+....+. +.++++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 67889999999999998765 6899999999999886 566788999999999999986655544 55678888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|.. ..++ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+
T Consensus 87 ~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 87 TLGLANNQL---------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp EEECTTSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcc---------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 888887765 3444 456778888999998888776655557888899999999888777
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDN 297 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~ 297 (779)
..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|++...
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666678889999999999999998876 588899999999999876543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=4.2e-19 Score=193.97 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=187.4
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC----CC------
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP----SN------ 109 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp----~~------ 109 (779)
-..++..+++|+.|+|++|.+++. ....++..+..+ ++|++|++++|.+..+. ..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~--------------~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTE--------------AARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHH--------------HHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHH--------------HHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHH
Confidence 346788999999999999988521 112244556667 59999999998776543 22
Q ss_pred --CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-----CCCC---------CCCcEEE
Q 004022 110 --FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-----NLHF---------VCPVTIN 173 (779)
Q Consensus 110 --~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-----~~~l---------~~L~~L~ 173 (779)
..+++|++|+|++|.++.. |.. .+|..+..+++|++|+|++|.+....+. +..+ ++|++|+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~--~~~-~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPT--AQE-PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTT--THH-HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHhhCCcccEEECCCCcCCHH--HHH-HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 2679999999999999862 110 1677888999999999999986422221 1223 8999999
Q ss_pred ecCCcCc-cccC------CcCCCccEEEecCcCCc------ccCcccCCCCCccEEeeeCCCCC----cccccccCCCCC
Q 004022 174 FSYCVNL-IEFP------QISGKVTRLYLGQSAIE------EVPSSIECLTDLEVLDLRGCKRL----KRISTSFCKLRS 236 (779)
Q Consensus 174 L~~~~~l-~~~~------~~~~~L~~L~L~~n~i~------~lp~~l~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~ 236 (779)
+++|... ..++ ....+|+.|++++|.+. .++..+..+++|++|+|++|.+. ..+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9999876 3333 24568999999999997 34448889999999999999975 667888899999
Q ss_pred CcEEecccccCCcc----cchhhhc--CccCcEeecCCcCCCc-----CCccC-CCCCCCCEEeccCCCCCCCC
Q 004022 237 LVTLILLGCLNLEH----FPEILEK--MEHLKRIYSDRTPITE-----LPSSF-ENLPGLEVLFVEDCSKLDNL 298 (779)
Q Consensus 237 L~~L~L~~~~~~~~----~p~~l~~--l~~L~~L~L~~n~i~~-----lp~~l-~~l~~L~~L~L~~~~~~~~l 298 (779)
|++|+|++|.+... ++..+.. +++|++|++++|.++. +|..+ .++++|+.|++++|.+.+..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999998765 5677744 8999999999999997 88877 67899999999999876543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=7.2e-18 Score=178.28 Aligned_cols=199 Identities=16% Similarity=0.068 Sum_probs=147.2
Q ss_pred CCCccEEeeeCCCCCccccccc--CCCCCCcEEecccccCCcccc----hhhhcCccCcEeecCCcCCCcCC-ccCCCCC
Q 004022 210 LTDLEVLDLRGCKRLKRISTSF--CKLRSLVTLILLGCLNLEHFP----EILEKMEHLKRIYSDRTPITELP-SSFENLP 282 (779)
Q Consensus 210 l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p----~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~ 282 (779)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568889998888888888777 788889999999888776544 33457889999999999998776 4588899
Q ss_pred CCCEEeccCCCCCCC--CCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC--hhhccCCCCCcE
Q 004022 283 GLEVLFVEDCSKLDN--LPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP--RTFLLGLSAMGL 358 (779)
Q Consensus 283 ~L~~L~L~~~~~~~~--lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~ 358 (779)
+|++|++++|++.+. ++. +..+..+++|++|++++|.+..... ...+..+++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMA---------------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHT---------------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS
T ss_pred CCCEEECCCCCCccchhhhH---------------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE
Confidence 999999999875431 110 1123567889999999998864322 112457899999
Q ss_pred EEecCCCCccC-CcccCCC---CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC-cCCCCCCCccEEEEecC
Q 004022 359 LHISDYAVREI-PQEIAYL---SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ-SLPELPLCLKYLHLIDC 431 (779)
Q Consensus 359 L~Ls~~~l~~~-p~~l~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~L~~L~l~~c 431 (779)
|++++|.+.+. |..+..+ ++|++|+|++|+++.+|..+. ++|+.|++++|++.+ ..+..+++|+.|++++|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 99999999885 7766665 699999999999999987664 789998888888765 22333344444444444
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3.3e-17 Score=176.31 Aligned_cols=223 Identities=20% Similarity=0.219 Sum_probs=141.6
Q ss_pred EEEecCCcCccccCCcC-CCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCccccc-ccCCCCCCcEE-eccccc
Q 004022 171 TINFSYCVNLIEFPQIS-GKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTL-ILLGCL 246 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~-~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L-~L~~~~ 246 (779)
.++-+++ .++.+|..+ .+++.|+|++|.|+.+|. .|.++++|++|+|++|++.+.+|. .|.++++|+++ .+.+|.
T Consensus 13 ~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4444443 344666544 467777777777777775 467777777777777776665553 35666666553 333444
Q ss_pred CCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccc
Q 004022 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV 325 (779)
Q Consensus 247 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l 325 (779)
+....|+.+..+++|++|++++|.++.+|.. +....++..|++.++.....++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-------------------------- 145 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-------------------------- 145 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--------------------------
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc--------------------------
Confidence 4444456666666777777777666666543 3344445555554433222222
Q ss_pred cCccccCeeeccCCCCCCccChhhccCC-CCCcEEEecCCCCccCCcccCCCCCccEEEEec-CCCccCCh-hccCCCCC
Q 004022 326 ALSNMLRSLDSSHCKGLESFPRTFLLGL-SAMGLLHISDYAVREIPQEIAYLSSLEILYLSG-NNFESLPA-IIKQMSQL 402 (779)
Q Consensus 326 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L 402 (779)
...+.++ ..++.|++++|.++.++.......+|++|++++ |.++.+|. .++.+++|
T Consensus 146 ---------------------~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 146 ---------------------RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp ---------------------TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ---------------------ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 1112233 356777888888887777666677888888874 67778874 56888888
Q ss_pred CEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCCCC
Q 004022 403 RFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLP 441 (779)
Q Consensus 403 ~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~ 441 (779)
+.|++++|++...-+..+.+|+.|.+.++..++.+|.+.
T Consensus 205 ~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp SEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTT
T ss_pred chhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCch
Confidence 888888887665444567788888888888888777543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.1e-19 Score=196.35 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=112.9
Q ss_pred cCCCCCccEEeeeCCCCCc----ccccccCCCCCCcEEecccccCCcccc----hhhhcC---------ccCcEeecCCc
Q 004022 207 IECLTDLEVLDLRGCKRLK----RISTSFCKLRSLVTLILLGCLNLEHFP----EILEKM---------EHLKRIYSDRT 269 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~~p----~~l~~l---------~~L~~L~L~~n 269 (779)
+..+++|++|++++|.+.. .+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3556666666666666554 345555566666666666665543222 223333 66666666666
Q ss_pred CCC--cCC---ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCC--
Q 004022 270 PIT--ELP---SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL-- 342 (779)
Q Consensus 270 ~i~--~lp---~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~-- 342 (779)
.++ .++ ..+..+++|+.|++++|.+... .... .++..+..+++|+.|++++|.+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~---------l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEH---------LLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHH---------HHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHH---------HHHHHhhcCCCccEEECcCCCCCcH
Confidence 665 333 2345566666666666643210 0000 01123455666777777777653
Q ss_pred --CccChhhccCCCCCcEEEecCCCCcc-----CCccc--CCCCCccEEEEecCCCcc-----CChhc-cCCCCCCEEEc
Q 004022 343 --ESFPRTFLLGLSAMGLLHISDYAVRE-----IPQEI--AYLSSLEILYLSGNNFES-----LPAII-KQMSQLRFIHL 407 (779)
Q Consensus 343 --~~~~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L 407 (779)
..++. .+..+++|+.|+|++|.++. ++..+ +.+++|++|+|++|.++. +|..+ .++++|+.|++
T Consensus 232 g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 232 GSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 22232 24567777777777777765 34555 347888888888888886 77666 56788888888
Q ss_pred CCCCCCCcC
Q 004022 408 EDFNMLQSL 416 (779)
Q Consensus 408 s~n~~~~~~ 416 (779)
++|++.+..
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 888776544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.5e-16 Score=162.68 Aligned_cols=176 Identities=21% Similarity=0.258 Sum_probs=120.9
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566666666777777665 57888888888877766667777888888888887777766667777777777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.+|.. +..+++|+.|++++|.+.+.. + .
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------------------------------~-~ 125 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----------------------------------------------S-G 125 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------------------------------T-T
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcC-----------------------------------------------h-h
Confidence 77766643 566666666666665443211 1 1
Q ss_pred hccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCCCc
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
.+..+++|+.|++++|.++.++. .+..+++|++|+|++|+++.+|. .+..+++|+.|++++|++...
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 13455666666777776666554 46777777888888877776664 577777888877777766543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=4.9e-19 Score=191.60 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=40.1
Q ss_pred CCCCcEEEecCCCCccCC-----cccCCCCCccEEEEecCCCcc--------CChhccCCCCCCEEEcCCCCCCCc
Q 004022 353 LSAMGLLHISDYAVREIP-----QEIAYLSSLEILYLSGNNFES--------LPAIIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p-----~~l~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
.++|++|++++|.+++.+ ..+..+++|++|+|++|.+.. ++..+..+++|+.|++++|++...
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 346666666666666532 234666777888887776332 334466777788878877776544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=3.3e-17 Score=185.82 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=155.8
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.+|..+ +++|++|+|++|+|+. +| ..+++|++|+|++|.+.. +|.+.+ +|+.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--------ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--------LP---ELPASLEYLDACDNRLST-LPELPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--------CC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCE
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--------cc---cccCCCCEEEccCCCCCC-cchhhc--CCCE
Confidence 8999999999999999876 3789999999999987 56 367999999999998554 777433 9999
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
|++++|.... +|..+.+|+.|++++|.+..+|. .+++|++|++++|.+.+ +|. +. ++|+.|+|++|.+. .+
T Consensus 125 L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 125 LDVDNNQLTM-LPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp EECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred EECCCCcCCC-CCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999997655 77777899999999999999987 57899999999998665 777 65 89999999999776 56
Q ss_pred chhhhcCccC-------cEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCC
Q 004022 252 PEILEKMEHL-------KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 252 p~~l~~l~~L-------~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l 302 (779)
|. +.. +| +.|++++|.++.+|..+..+++|+.|+|++|++.+..|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 66 544 67 99999999999999998889999999999999887666543
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.4e-18 Score=186.04 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=135.2
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcc-cccccCCCCCCcEEecccccCCcccchhhhcCccCcEeec
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR-ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 266 (779)
.+++.|++++|.+...+..+..+++|++|++++|.+... ++..+..+++|++|++++|...+..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555566666677788899999998886654 7777888889999999988877777888888888888888
Q ss_pred CCc-CCC--cCCccCCCCCCCCEEeccCC-CCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc-ccCeeeccCCC-
Q 004022 267 DRT-PIT--ELPSSFENLPGLEVLFVEDC-SKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN-MLRSLDSSHCK- 340 (779)
Q Consensus 267 ~~n-~i~--~lp~~l~~l~~L~~L~L~~~-~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~-~L~~L~l~~n~- 340 (779)
++| .++ .++..+..+++|++|++++| .+... .++..+..++ +|++|++++|.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----------------------~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----------------------HVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----------------------HHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH----------------------HHHHHHHhcccCCCEEEeCCCcc
Confidence 888 666 36666777888888888887 43211 1223345566 78888888774
Q ss_pred -CC-CccChhhccCCCCCcEEEecCCC-Ccc-CCcccCCCCCccEEEEecCC-Cc-cCChhccCCCCCCEEEcCCC
Q 004022 341 -GL-ESFPRTFLLGLSAMGLLHISDYA-VRE-IPQEIAYLSSLEILYLSGNN-FE-SLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 341 -~~-~~~~~~~~~~l~~L~~L~Ls~~~-l~~-~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~n 410 (779)
+. ..++. .+..+++|+.|++++|. +++ .+..+..+++|++|++++|. +. .....+..+++|+.|++++|
T Consensus 208 ~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 208 NLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 33 11222 24467777777777777 443 55566677777777777774 22 11124666777777666666
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.3e-18 Score=188.27 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=125.7
Q ss_pred CCCCCCCceEEEccCCCCCCCCC-----CC-CCC-CCcEEECCCCCCCCccCCCCcccCccccCC-----CCCcEEeccC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPS-----NF-KPK-NLVELNLRCSKVEQPWEGEKACVPSSIQNF-----KYLSALSFKG 153 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~-----~~-~l~-~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l-----~~L~~L~Ls~ 153 (779)
+...+++|++|++++|.++..+. .+ .++ +|++|+|++|.++.. .+..+..+ ++|++|+|++
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-------NSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-------CHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-------HHHHHHHHHhccCCCccEEECcC
Confidence 34444679999999999988874 34 666 899999999998864 34445443 8899999999
Q ss_pred CCCCCCCCC-----CCCC-CCCcEEEecCCcCccccCCc--------CCCccEEEecCcCCc-----ccCcccCCCC-Cc
Q 004022 154 CQSLRSFPS-----NLHF-VCPVTINFSYCVNLIEFPQI--------SGKVTRLYLGQSAIE-----EVPSSIECLT-DL 213 (779)
Q Consensus 154 n~~l~~~p~-----~~~l-~~L~~L~L~~~~~l~~~~~~--------~~~L~~L~L~~n~i~-----~lp~~l~~l~-~L 213 (779)
|.+....+. +..+ ++|++|++++|......+.. ..+|++|++++|.++ .++..+..++ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 986544443 2334 78888888888764432211 236777777777665 3344444444 67
Q ss_pred cEEeeeCCCCCcccccc----cCCC-CCCcEEecccccCCcc----cchhhhc-CccCcEeecCCcCCCcCCc-----cC
Q 004022 214 EVLDLRGCKRLKRISTS----FCKL-RSLVTLILLGCLNLEH----FPEILEK-MEHLKRIYSDRTPITELPS-----SF 278 (779)
Q Consensus 214 ~~L~L~~~~~~~~lp~~----l~~l-~~L~~L~L~~~~~~~~----~p~~l~~-l~~L~~L~L~~n~i~~lp~-----~l 278 (779)
++|++++|.+....+.. +..+ ++|++|+|++|.+... ++..+.. .++|++|++++|.++..+. .+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 77777776654443322 2233 4677777776665442 3444444 3466677776666664432 24
Q ss_pred CCCCCCCEEeccCCC
Q 004022 279 ENLPGLEVLFVEDCS 293 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~ 293 (779)
..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTCSEEEEEHHH
T ss_pred hcCCCccEEEeccCC
Confidence 556666666666654
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=4.2e-16 Score=176.67 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=159.5
Q ss_pred hhhhccc-----CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCc
Q 004022 42 RAFTNMS-----NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLV 116 (779)
Q Consensus 42 ~~f~~l~-----~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~ 116 (779)
.+|.+++ +|+.|++++|.++ .+|..+. ++|++|++++|.++.+| -.+++|+
T Consensus 48 ~~~~~l~~C~~~~L~~L~Ls~n~L~-------------------~lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~ 103 (571)
T 3cvr_A 48 EAVSLLKECLINQFSELQLNRLNLS-------------------SLPDNLP---PQITVLEITQNALISLP--ELPASLE 103 (571)
T ss_dssp HHHHHHHHHHHTTCSEEECCSSCCS-------------------CCCSCCC---TTCSEEECCSSCCSCCC--CCCTTCC
T ss_pred chhhhccccccCCccEEEeCCCCCC-------------------ccCHhHc---CCCCEEECcCCCCcccc--cccCCCC
Confidence 3677776 9999999999884 3666553 58999999999999999 4578999
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEec
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLG 196 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~ 196 (779)
+|+|++|+|+. +|. +.. +|++|+|++|.+. .+|. .+++|+.|++++|... .+|..+.+|+.|+++
T Consensus 104 ~L~Ls~N~l~~--------ip~-l~~--~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 104 YLDACDNRLST--------LPE-LPA--SLKHLDVDNNQLT-MLPE--LPALLEYINADNNQLT-MLPELPTSLEVLSVR 168 (571)
T ss_dssp EEECCSSCCSC--------CCC-CCT--TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred EEEccCCCCCC--------cch-hhc--CCCEEECCCCcCC-CCCC--cCccccEEeCCCCccC-cCCCcCCCcCEEECC
Confidence 99999999987 566 555 9999999999854 4777 7899999999999865 477777899999999
Q ss_pred CcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCC-------cEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 197 QSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL-------VTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 197 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L-------~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
+|.+..+|. +. ++|+.|++++|.+. .+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 169 ~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 999999998 66 89999999999865 6776 654 77 99999998776 57888888999999999999
Q ss_pred CCC-cCCccCCC
Q 004022 270 PIT-ELPSSFEN 280 (779)
Q Consensus 270 ~i~-~lp~~l~~ 280 (779)
.++ .+|..+..
T Consensus 241 ~l~~~~p~~l~~ 252 (571)
T 3cvr_A 241 PLSSRIRESLSQ 252 (571)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCCcCHHHHHH
Confidence 998 44554444
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=5.3e-16 Score=162.14 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=133.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++|++|++++|.++.++....+++|++|+|++|+++. ++. +..+++|++|++++|. ++.++.+..+++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLK 115 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--------Ccc-cccCCCCCEEECCCCc-CCCChhhccCCCCC
Confidence 5899999999999999864489999999999999987 344 8899999999999998 45577777788888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..+ +.+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 116 ~L~L~~n~i---------------------~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 116 SLSLEHNGI---------------------SDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp EEECTTSCC---------------------CCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred EEECCCCcC---------------------CCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 888888765 333 3566778888888888776554 3477788888888888776654
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 44 7788888888888888888765 7888888888888876543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.4e-16 Score=152.22 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
+.++.+++.++.+|..+ +++|++|++++|+++.+ .+..|..+++|++|++++|++....+. +.++++|++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSL-------PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcC-------ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 45566666666666544 34677777777776653 333456666777777766654322222 2334455555
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
++++|.. ..++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 82 ~Ls~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 82 NLSTNQL---------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp ECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCcC---------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 5544432 22222 2344455555555554443333333444444444444444433333
Q ss_pred chhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
+..+..+++|++|++++|.+. +.+++|+.|+++.|.+.+.+|..
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred HHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence 333444444444444444322 22334444444444444444433
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=7e-16 Score=161.22 Aligned_cols=177 Identities=17% Similarity=0.183 Sum_probs=139.0
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.++.+++|+.|++++|.++ .++ ++..+ ++|++|++++|.++.++....+++|++|++++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~l-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIK-------------------SVQ-GIQYL-PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE 99 (291)
T ss_dssp CHHHHHTCCEEECTTSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred chhhcCcccEEEccCCCcc-------------------cCh-hHhcC-CCCCEEEccCCccCCCcccccCCCCCEEECCC
Confidence 4568999999999999884 333 46666 59999999999999998844999999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. +| .+..+++|++|++++|.+ +.++.+..+++|+.|++++|.. ..
T Consensus 100 n~l~~--------~~-~l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~l---------------------~~ 148 (291)
T 1h6t_A 100 NKVKD--------LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKI---------------------TD 148 (291)
T ss_dssp SCCCC--------GG-GGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCC---------------------CC
T ss_pred CcCCC--------Ch-hhccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCcC---------------------Cc
Confidence 99986 33 488999999999999984 4567777788888888888765 33
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS 276 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~ 276 (779)
+ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++..|.
T Consensus 149 ~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 149 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 3 456777888888888887655433 7778888888888876654 34 37788888888888888876554
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=8.6e-16 Score=150.70 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=60.7
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
.+..++.+++|++|++++|.+....+..+..+++|++|++++|...+.+| .+..+++|++|++++|.++.++ .+..++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~ 181 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFP 181 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCS
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCC
Confidence 44555666667777777766665556666667777777777766445555 4677777777777777777766 567777
Q ss_pred CCCEEeccCCCC
Q 004022 283 GLEVLFVEDCSK 294 (779)
Q Consensus 283 ~L~~L~L~~~~~ 294 (779)
+|+.|++++|++
T Consensus 182 ~L~~L~l~~N~i 193 (197)
T 4ezg_A 182 KLNQLYAFSQTI 193 (197)
T ss_dssp SCCEEEECBC--
T ss_pred CCCEEEeeCccc
Confidence 888888877764
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=5e-15 Score=146.62 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=113.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +.+|++|++++|.++.+|.. + .+++|++|++++|+++.+ .+..|..+++|++|++++|.+..
T Consensus 21 ~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 21 SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-------PNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-------ChhhcCCCCCcCEEECCCCcCCc
Confidence 556544 36899999999999999875 4 899999999999999875 44567899999999999998654
Q ss_pred CCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 159 SFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 159 ~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
..+. +.++++|++|++++|... .++. .+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~---------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQ---------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCHhHhcCccCCCEEEcCCCcCc---------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 4333 457888998888888654 3332 3455666666666666555444444555666
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCCC
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPG 283 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~ 283 (779)
|++|++++|.... .+++|+.|+++.|.++ .+|.+++.++.
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6666666654432 3345666666666655 55555554443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=3.4e-15 Score=171.20 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=132.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|++|++++|.+..+|....+++|+.|+|++|.|+.+ +. +..+++|+.|+|++|. +..+|.+..+++|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--------~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 112 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--------KP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLK 112 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--------GG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--------hh-hccCCCCCEEECcCCC-CCCChhhccCCCCC
Confidence 58999999999999998655899999999999999873 43 8899999999999998 45677777888888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|+|++|... .+ +.+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+.
T Consensus 113 ~L~Ls~N~l~---------------------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 113 SLSLEHNGIS---------------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp EEECTTSCCC---------------------CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred EEEecCCCCC---------------------CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8888888653 33 2466777888888888776554 3477788888888888776665
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.| +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 55 777888888888888888774 47778888888888876654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.6e-15 Score=172.12 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=136.9
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.+..+++|+.|++++|.++ .++ .+..+ ++|++|++++|.++.++....+++|+.|+|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~-------------------~l~-~l~~l-~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIK-------------------SVQ-GIQYL-PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCC-------------------CCT-TGGGC-TTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred chhcCCCCCEEECcCCCCC-------------------CCh-HHccC-CCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence 3678899999999999884 333 46667 59999999999999998844999999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. +| .+..+++|+.|+|++|.+ ..++.+..+++|+.|+|++|... .
T Consensus 97 N~l~~--------l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~---------------------~ 145 (605)
T 1m9s_A 97 NKIKD--------LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKIT---------------------D 145 (605)
T ss_dssp SCCCC--------CT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSCCC---------------------C
T ss_pred CCCCC--------Ch-hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCccC---------------------C
Confidence 99986 33 688999999999999984 45677788889999998888653 3
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS 276 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~ 276 (779)
+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+...|.
T Consensus 146 l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 146 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 3 456667777777777777655444 67777777777777766542 346777777788887777776553
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.8e-14 Score=143.77 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.1
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTIN 173 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~ 173 (779)
+.++++++.++.+|..+. ++|++|+|++|+|+.+ .+..|..+++|++|+|++|.+....|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i-------~~~~~~~l~~L~~L~Ls~N~i~~~~~------------ 73 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVI-------PPGAFSPYKKLRRIDLSNNQISELAP------------ 73 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEE-------CTTSSTTCTTCCEEECCSSCCCEECT------------
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCc-------CHhHhhCCCCCCEEECCCCcCCCcCH------------
Confidence 567888888888887654 6788888888888764 34467777777777777776433222
Q ss_pred ecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccch
Q 004022 174 FSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253 (779)
Q Consensus 174 L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 253 (779)
..+..+++|++|+|++|.+....+..|.++++|++|+|++|.+.+..|.
T Consensus 74 -------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 74 -------------------------------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp -------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -------------------------------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 3334444444444444443333223344455555555555555555555
Q ss_pred hhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
.+..+++|++|++++|.++.++.. +..+++|+.|++++|++.
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555666666666666666666543 666677777777776543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=144.01 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=96.5
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccC-ccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVP-SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp-~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
-+++++++|.++.+|..+ ...+++|+|++|+|+.+ .| ..|..+++|++|+|++|.+....+
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~i~~i~~---------- 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVL-------EATGIFKKLPQLRKINFSNNKITDIEE---------- 74 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE-------CCCCCGGGCTTCCEEECCSSCCCEECT----------
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCcc-------CchhhhccCCCCCEEECCCCcCCEECH----------
Confidence 357888888888888765 34567888888888763 22 236677777777777776332222
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
..+..+++|++|++++|.+.+..+..+.++++|++|+|++|.+.+..
T Consensus 75 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 75 ---------------------------------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred ---------------------------------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 23445555555555555555444445555666666666666665555
Q ss_pred chhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCC
Q 004022 252 PEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~ 296 (779)
|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|++..
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66666666666666666666665 4456677777777777766543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=142.56 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=120.1
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC-CCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS-FPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-~p~~~~l~~L 169 (779)
.+|++|++++|.++.+|....+++|++|++++|.++. ++.+..+++|++|++++|.+... .+.+.++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~---------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN---------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC---------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc---------chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4899999999999999943388999999999998764 34678899999999999986653 4446678888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
++|++++|... ...+..++.+++|++|++++|...+.+| .+..+++|++|++++|.+.+
T Consensus 115 ~~L~Ls~n~i~--------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHD--------------------DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCB--------------------GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccC--------------------cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 88888888764 3456678889999999999988666666 48889999999999987765
Q ss_pred ccchhhhcCccCcEeecCCcCCCc
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
++ .+..+++|++|++++|.+..
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 44 68889999999999998753
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1e-14 Score=157.38 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=128.1
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
-++++++++.++.+|..+ ...++.|+|++|+|+.+ .+..+. .+++|++|+|++|++....+. +.++++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l-------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRL-------RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEE-------CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCcc-------ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 368899999999999765 34689999999999885 444565 889999999999885544433 56677777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|+|++|.. ..++. .+..+++|++|+|++|.+....|..|.++++|++|+|++|.+..
T Consensus 92 ~L~Ls~N~l---------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 92 YLDLSSNHL---------------------HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EEECCSSCC---------------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEECCCCcC---------------------CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 777777764 44443 56778888888888888777667778888888888888877665
Q ss_pred ccchhh---hcCccCcEeecCCcCCCcCCc-cCCCCCC--CCEEeccCCCCC
Q 004022 250 HFPEIL---EKMEHLKRIYSDRTPITELPS-SFENLPG--LEVLFVEDCSKL 295 (779)
Q Consensus 250 ~~p~~l---~~l~~L~~L~L~~n~i~~lp~-~l~~l~~--L~~L~L~~~~~~ 295 (779)
..+..+ ..+++|+.|++++|.++.+|. .+..++. ++.|++++|++.
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 444444 568888888888888888875 3666665 477888887653
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.4e-14 Score=156.37 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccC-CCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
+.++++++.+..+|..+. ..++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355556666666766554 3467777777766555555555 6777777777777666655666677777777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.++.. +..+++|+.|+|++|.+....|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------------------ 130 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN------------------------------------------------ 130 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHH------------------------------------------------
Confidence 77666543 56666666666666544332211
Q ss_pred hccCCCCCcEEEecCCCCccCCccc----CCCCCccEEEEecCCCccCC-hhccCCCC--CCEEEcCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQEI----AYLSSLEILYLSGNNFESLP-AIIKQMSQ--LRFIHLEDFNM 412 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~~l----~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~--L~~L~Ls~n~~ 412 (779)
.+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+++.+| ..+..++. |+.|++++|++
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 1345566666666666666666543 46788888888888888877 45667776 37777777764
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=4.7e-14 Score=141.74 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCCCCCC
Q 004022 352 GLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+++|+.|++++|.++.+|..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|++..
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 445555555666666666666666777777777777777666 346677777777777776554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=7.3e-14 Score=140.34 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=92.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L 169 (779)
..+.++.+++.++.+|..+. ++|++|+|++|+|+.+ .|..|..+++|++|+|++|.+ +.+|. +.++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKL-------EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCcc-------CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCc
Confidence 46678888888988887654 7888999999988875 567788888888888888874 33332 2334444
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+.|++++| .+....+..+..+++|++|++++|.+.
T Consensus 91 ~~L~Ls~N--------------------------------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 91 TVLDLGTN--------------------------------------------QLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp CEEECCSS--------------------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CEEECCCC--------------------------------------------cCCccChhHhCcchhhCeEeccCCccc-
Confidence 44444444 333322333344444444444444433
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
.+|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 3444455555666666666666655543 566666666666666544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.4e-15 Score=151.40 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=81.9
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
++..++++++.++.++....+++|++|++++|.++. +| .+..+++|++|+|++|.+ +.++.+.++++|+.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--------l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~ 89 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--------LA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--------CT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCE
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--------ch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCE
Confidence 555666666666666632266677777777776665 33 455667777777777663 33344556666666
Q ss_pred EEecCCcCccccCCc-CCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQI-SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~-~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
|++++|.... ++.. ..+|+.|++++|.+..++ .++.+++|+.|++++|++.+ ++ .+..+++|++|++++|.+.+.
T Consensus 90 L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCC-cCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 6666665422 1100 023333333333334433 34444455555555444322 22 244444444444444433332
Q ss_pred cchhhhcCccCcEeecCCcCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
..+..+++|+.|++++|.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 23334444444444444443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1.3e-14 Score=149.12 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.+|....+++|++|+|++|+|+. ++. +..+++|++|+|++|+ ++.+|.+.. ++|+.
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LSP-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSR 110 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCE
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Chh-hccCCCCCEEECCCCc-cCCcCcccc-CcccE
Confidence 444444444444444421144444444444444443 122 3444444444444444 222333222 44444
Q ss_pred EEecCCcCccccC--CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 172 INFSYCVNLIEFP--QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 172 L~L~~~~~l~~~~--~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
|++++|.... ++ ..+.+|+.|++++|.+..++ .++.+++|++|++++|.+.+. ..+..+++|+.|++++|....
T Consensus 111 L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4444443322 11 12234555555555556665 677788888888888886655 457788888888888887654
Q ss_pred c
Q 004022 250 H 250 (779)
Q Consensus 250 ~ 250 (779)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=5.6e-14 Score=140.22 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=100.3
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGL 284 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L 284 (779)
.+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 467889999999999998777777899999999999999999888888899999999999999999988 5669999999
Q ss_pred CEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
+.|+|++|.+.+..|..+..+++|+. .+.++...
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999999888999999999888 55555443
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=1e-13 Score=138.38 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=100.5
Q ss_pred cccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccC
Q 004022 201 EEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSF 278 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l 278 (779)
..++. .+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|++|++++|.++.++ ..+
T Consensus 45 ~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 45 KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 55554 6788999999999999988888889999999999999999988766777899999999999999999885 569
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcc
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAAS 316 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~ 316 (779)
..+++|+.|+|++|.+.+..+..+..+++|+. .+.++.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999999999999998887778888888887 454443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=2e-16 Score=180.22 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=106.5
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCC-------------CCcccccccCCCCCCcEEe-cccccCCcccch
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCK-------------RLKRISTSFCKLRSLVTLI-LLGCLNLEHFPE 253 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~ 253 (779)
..|+.|+|++|.++.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.+..
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------ 422 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------ 422 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence 45666777777777777777777777777776553 2333344444455555554 332211
Q ss_pred hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
.+|+.+.+++|.++.+|. ..|+.|++++|.+.+ +|. ++.+++|+.
T Consensus 423 -----~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~------------------------lp~-~~~l~~L~~ 467 (567)
T 1dce_A 423 -----DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV------------------------LCH-LEQLLLVTH 467 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS------------------------CCC-GGGGTTCCE
T ss_pred -----chhhhhhhhcccccccCc-----cCceEEEecCCCCCC------------------------CcC-ccccccCcE
Confidence 011111112222222221 135555555543321 222 444555555
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccC--ChhccCCCCCCEEEcCCCC
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESL--PAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~ 411 (779)
|++++|.+.. +|.. +..+++|+.|+|++|.++.+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus 468 L~Ls~N~l~~-lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 468 LDLSHNRLRA-LPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCCC-CCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred eecCcccccc-cchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 6666555552 3322 456666666666666666666 566666777777777766655 6666667777777777766
Q ss_pred CCCcCCCC------CCCccEEE
Q 004022 412 MLQSLPEL------PLCLKYLH 427 (779)
Q Consensus 412 ~~~~~~~~------~~~L~~L~ 427 (779)
+.+..+.. +++|+.|+
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCccHHHHHHHHCcccCccC
Confidence 66554432 35666664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=8.8e-16 Score=174.97 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=139.6
Q ss_pred CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEE
Q 004022 208 ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 287 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 287 (779)
...++|+.|+|++|.+ +.+|..++.+++|+.|++++|.....+|..+.. + +.....|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------~----~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRA------L----DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------H----CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHh------c----ccccCCHHHHHHHHhcccC
Confidence 4456666666666553 455666666666666666554311111100000 0 0111233344555555555
Q ss_pred e-ccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCC
Q 004022 288 F-VEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366 (779)
Q Consensus 288 ~-L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l 366 (779)
+ ++.+ .+..|.......+.+..++. ..|+.|++++|.+.+. |. +..+++|+.|++++|.+
T Consensus 415 ~~l~~n-----------~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~--~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 415 DPMRAA-----------YLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH--LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp CGGGHH-----------HHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC--GGGGTTCCEEECCSSCC
T ss_pred cchhhc-----------ccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC--ccccccCcEeecCcccc
Confidence 5 3332 12344442222333333332 2489999999998874 43 67899999999999999
Q ss_pred ccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcC-CC---CCCCccEEEEecCCCCCCCCC---
Q 004022 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSL-PE---LPLCLKYLHLIDCKMLQSLPV--- 439 (779)
Q Consensus 367 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~-~~---~~~~L~~L~l~~c~~l~~lp~--- 439 (779)
+.+|..++.+++|+.|+|++|.++.+| .++.+++|+.|+|++|.+.+.. |. .+++|+.|++++|+.-...|.
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 999999999999999999999999999 8999999999999999998876 65 358899999999975433332
Q ss_pred ----CCCCccEEEe
Q 004022 440 ----LPFCLESLDL 449 (779)
Q Consensus 440 ----l~~~L~~L~l 449 (779)
+| +|+.|++
T Consensus 555 l~~~lp-~L~~L~l 567 (567)
T 1dce_A 555 LAEMLP-SVSSILT 567 (567)
T ss_dssp HHHHCT-TCSEEEC
T ss_pred HHHHCc-ccCccCC
Confidence 33 7887753
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=4.9e-14 Score=165.62 Aligned_cols=137 Identities=22% Similarity=0.136 Sum_probs=96.7
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL 274 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l 274 (779)
|++|.+..+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+
T Consensus 231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp CTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred CCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc
Confidence 333333667777777888888888888766 77877888888888888888776 6788888899999999999999999
Q ss_pred CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH--HHhhcccCCcCCccccCccccCeeeccCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY--ILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~--~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
|..++.+++|+.|+|++|.+.+.+|..+..+..... .+.++.....+|. .|+.|+++.|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 988999999999999999988877776654433222 4555555445554 3445555554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.8e-13 Score=128.08 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=40.8
Q ss_pred CcccCCCCCccEEeeeCCCCCccc-ccccCCCCCCcEEecccccCCcccc---hhhhcCccCcEeecCCcCCCcCCcc
Q 004022 204 PSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCLNLEHFP---EILEKMEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 204 p~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~p---~~l~~l~~L~~L~L~~n~i~~lp~~ 277 (779)
|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.++|.+
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 333444555555565555543321 1345556666666666665544333 3566666666666666666666653
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3.3e-14 Score=167.07 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=109.9
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL 274 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l 274 (779)
+..|.+...+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc
Confidence 334444656778889999999999999865 67777888999999999999877 7899999999999999999999999
Q ss_pred CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLS 354 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 354 (779)
|..++.+++|+.|+|++|.+. . +|..++.+++|+.|+|++|.+.+.++........
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~-----------------------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-T-----------------------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-C-----------------------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-c-----------------------cChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 999999999999999998643 3 3445667788999999999888776654311111
Q ss_pred CCcEEEecCCCCcc-CCcccCCCCCccEEEEecC
Q 004022 355 AMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGN 387 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n 387 (779)
.+..|++++|.++. +| ..|+.|+++.|
T Consensus 342 ~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHCCCCCCCC------CC---------
T ss_pred hhhHHhhccCcccCcCc------cccceeEeecc
Confidence 12235677777765 44 34566667666
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=1.8e-12 Score=137.93 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=156.1
Q ss_pred hhhc-ccCCceEeeccCcccccccCCCC-ccccccccceeecCCCCCCC--------CCCceEEEccCCCCCCCCCC-C-
Q 004022 43 AFTN-MSNLRLFKFYVPKFYEIEKLPSM-STEEQLSYSKVQLPNGLDYL--------PKKLRYLHWDTYPLRTLPSN-F- 110 (779)
Q Consensus 43 ~f~~-l~~Lr~L~l~~n~l~~i~~l~~l-~~~~~~~~~~~~l~~~l~~l--------~~~L~~L~l~~n~l~~lp~~-~- 110 (779)
.+.. +++|+.|+|++|+++.+...... ............+|+..+.- ..+|+.|++.+ .++.|+.. |
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 3444 78899999999999732221111 11122222333677766655 46999999999 89999865 5
Q ss_pred CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC---CCCCCC--CCCCCCCc-EEEecCCcCcc---
Q 004022 111 KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS---LRSFPS--NLHFVCPV-TINFSYCVNLI--- 181 (779)
Q Consensus 111 ~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~---l~~~p~--~~~l~~L~-~L~L~~~~~l~--- 181 (779)
++.+|+.|++++|.+..+ -+.+|..+.++..+.+..... ...+.. +.++..|+ .+.+.....+.
T Consensus 122 ~~~~L~~l~l~~n~i~~i-------~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNL-------LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp TCTTCCEEEBCCSSCCEE-------CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred cCcccceEEcCCCCcccc-------chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence 899999999999998876 455677777777777655221 111111 23344444 33332211110
Q ss_pred -------------------------ccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCC
Q 004022 182 -------------------------EFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLR 235 (779)
Q Consensus 182 -------------------------~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 235 (779)
.+.....+|+.|++.+|.+..+|. .|.++++|+.|++.++ +...-+.+|.++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 011124678888888888888886 5777888888888876 3444445578888
Q ss_pred CCc-EEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEec
Q 004022 236 SLV-TLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFV 289 (779)
Q Consensus 236 ~L~-~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L 289 (779)
+|+ .+.+.+ .....-+..|.++++|+.++++++.++.++.. |.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 888877 45555567788888888888888888888764 788888888753
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.2e-12 Score=124.58 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCCcEEecccccCC-cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHh
Q 004022 235 RSLVTLILLGCLNL-EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 313 (779)
Q Consensus 235 ~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~ 313 (779)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--------------- 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL--------------- 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCC---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHH---------------
Confidence 34444444444433 23444444445555555555555544 34555555555555555433221
Q ss_pred hcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc----ccCCCCCccEEEEecCCC
Q 004022 314 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ----EIAYLSSLEILYLSGNNF 389 (779)
Q Consensus 314 ~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~----~l~~l~~L~~L~Ls~n~l 389 (779)
|..+..+++|+.|++++|.+........+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 88 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 88 --------DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp --------CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred --------HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 12222334444444444444332211123344455555555555444443 344455555555555544
Q ss_pred ccCC
Q 004022 390 ESLP 393 (779)
Q Consensus 390 ~~lp 393 (779)
..+|
T Consensus 160 ~~~~ 163 (168)
T 2ell_A 160 QEAP 163 (168)
T ss_dssp CBCC
T ss_pred hhcc
Confidence 4444
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=4.8e-12 Score=123.22 Aligned_cols=130 Identities=17% Similarity=0.046 Sum_probs=92.7
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCc-cccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~-~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
-++++++++.++.+|..+. .+|++|+|++|+|+.+ .+. .|+.+++|++|+|++|.+.+..|. +.++++|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCcc-------CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 3688999999999998663 3899999999999874 222 378889999999999886655454 45577777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|... ...+..+..+++|++|++++|++.+..|..+..+++|++|++++|.....
T Consensus 82 ~L~Ls~N~l~--------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIK--------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCC--------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCC--------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777766543 22233466677777777777777666676677777777777777665543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=5.4e-12 Score=122.89 Aligned_cols=91 Identities=21% Similarity=0.142 Sum_probs=59.8
Q ss_pred cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCC
Q 004022 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLE 285 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~ 285 (779)
++.+++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 45566666666666665555555666666666666666666665566666667777777777777754 45577777777
Q ss_pred EEeccCCCCCCC
Q 004022 286 VLFVEDCSKLDN 297 (779)
Q Consensus 286 ~L~L~~~~~~~~ 297 (779)
.|++++|++...
T Consensus 130 ~L~L~~N~l~c~ 141 (192)
T 1w8a_A 130 SLNLASNPFNCN 141 (192)
T ss_dssp EEECTTCCBCCS
T ss_pred EEEeCCCCccCc
Confidence 777777766543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.9e-12 Score=120.49 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=17.1
Q ss_pred CceEEEccCCCCC--CCCCCC-CCCCCcEEECCCCCCC
Q 004022 92 KLRYLHWDTYPLR--TLPSNF-KPKNLVELNLRCSKVE 126 (779)
Q Consensus 92 ~L~~L~l~~n~l~--~lp~~~-~l~~L~~L~L~~n~i~ 126 (779)
+|++|++++|.++ .+|..+ .+++|++|++++|.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 4555555555554 444443 4444444444444444
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=7.9e-12 Score=121.72 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=97.8
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.+|+.|++++|.+..+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45777777777778999999999999999999999888777889999999999999999988888899999999999999
Q ss_pred CcCCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 268 RTPITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 268 ~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
+|.++.+|.. +..+++|+.|++++|+...
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999885 8899999999999987643
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=119.70 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=86.3
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
++++++++.++.+|..+ .++|++|+|++|+|+. +|..|..+++|++|+|++|.+....+. +.++++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~--------ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTL--------VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCS--------CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCch--------hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 57899999999999765 3689999999999986 678888999999999999885544333 5566777777
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccC
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN 247 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 247 (779)
++++|... .++ ..+..+++|++|+|++|.+....+..+..+++|+.|++++|..
T Consensus 84 ~Ls~N~l~---------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 84 ILSYNRLR---------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp ECCSSCCC---------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCccC---------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 77666543 333 3456666666666666665544444455566666666666544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.8e-12 Score=119.26 Aligned_cols=85 Identities=26% Similarity=0.198 Sum_probs=45.4
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc-cchhhhcCccCcEeecCCcCCCcCCc----cCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH-FPEILEKMEHLKRIYSDRTPITELPS----SFEN 280 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~L~~n~i~~lp~----~l~~ 280 (779)
.++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++.+|. .+..
T Consensus 59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 344455555555555554444444444455555555555554432 23455556666666666666665554 3555
Q ss_pred CCCCCEEecc
Q 004022 281 LPGLEVLFVE 290 (779)
Q Consensus 281 l~~L~~L~L~ 290 (779)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 6666666554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=5.7e-12 Score=120.85 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=45.5
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccch--hhhcCccCcEeecCCcCCCcCCcc----CC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE--ILEKMEHLKRIYSDRTPITELPSS----FE 279 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~n~i~~lp~~----l~ 279 (779)
.++.+++|++|++++|.+....+..+..+++|++|++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 344455555555555544332222224455555555555544 22333 455566666666666666655553 55
Q ss_pred CCCCCCEEeccCCC
Q 004022 280 NLPGLEVLFVEDCS 293 (779)
Q Consensus 280 ~l~~L~~L~L~~~~ 293 (779)
.+++|+.|++++|.
T Consensus 138 ~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 138 KVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCSEETTEECC
T ss_pred HCCccceeCCCcCC
Confidence 66666666666553
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=6.6e-11 Score=113.46 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=85.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+.+.++++++.++.+|..+ +++|++|++++|+++.+ .+..|..+++|++|++++|.+....+. +.++++|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEe-------CHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 3567888888888888654 36888888888888764 344567888888888888875433333 34566777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|.. ..+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|....
T Consensus 80 ~L~l~~N~l---------------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENKL---------------------QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCCc---------------------cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 776666654 33333 34566677777777766554433334566666777776666554
Q ss_pred cc
Q 004022 250 HF 251 (779)
Q Consensus 250 ~~ 251 (779)
..
T Consensus 139 ~~ 140 (177)
T 2o6r_A 139 SC 140 (177)
T ss_dssp CH
T ss_pred cC
Confidence 33
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=6.1e-11 Score=113.72 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=90.3
Q ss_pred CCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeec
Q 004022 188 GKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 266 (779)
.+|+.|++++|.+..++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555566666665 4688999999999999877666666788999999999999888777777899999999999
Q ss_pred CCcCCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 267 DRTPITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 267 ~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
++|.++.+|.. +..+++|+.|++++|++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999886 5889999999999997654
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=6.3e-11 Score=125.87 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=57.5
Q ss_pred ccCccccCeeeccCCCCCCccChhhccCCCCCc-EEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCC
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG-LLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQ 401 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~ 401 (779)
|..+++|+.+++.+| ...++...|.++.+|+ .+++.+ .++.++ ..|..+++|+.|++++|+++.++ ..|.++++
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 444555555555554 3334444577888888 888887 677754 56888999999999999999887 47888999
Q ss_pred CCEEE
Q 004022 402 LRFIH 406 (779)
Q Consensus 402 L~~L~ 406 (779)
|+.++
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 98875
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=8.3e-12 Score=119.72 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCceEEEccCCCCCCCCCCCCCC-CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPK-NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~-~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
.+|++|++++|.++.+|....+. +|++|++++|.|+.+ ..+..+++|++|++++|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---------~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---------DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---------CCCCCCSSCCEEECCSSC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---------cccccCCCCCEEECCCCc
Confidence 46677777777766665443333 666666666666542 234455566666665555
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=2.6e-09 Score=116.10 Aligned_cols=237 Identities=9% Similarity=0.098 Sum_probs=109.1
Q ss_pred CceEEEccCCCCCCCCCC-CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
+|+.+.+..+ ++.|+.. |.-.+|+.+.+.. .++.+ -+.+|.++++|+.+++.+|. ++.++. .+...+|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I-------~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQL-------KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI 205 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEE-------CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEe-------hHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence 5666666554 5556543 3224566666664 45544 23456666666666666655 333332 2334556
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
+.+.+..+ + ..++. .|.++++|+.+++..+ +...-..+|.+ .+|+.+.+.. ...
T Consensus 206 ~~l~lp~~--l--------------------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 206 EEVLLPVT--L--------------------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp SEEECCTT--C--------------------CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred CEEEeCCc--h--------------------heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 66655532 2 22221 2333444444444331 11111122222 3444444421 222
Q ss_pred cccchhhhcCccCcEeecCCcCCC-----cCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPIT-----ELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~-----~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
..-...|.++++|+.+.+.++.+. .++. .|..+++|+.+.+.++ ...++ .
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~----------------------~ 316 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILG----------------------Q 316 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEEC----------------------T
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEh----------------------h
Confidence 222333444444444444443332 2332 2455555555554421 11111 1
Q ss_pred ccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCC-CCccEEEEecCCCc
Q 004022 323 SSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYL-SSLEILYLSGNNFE 390 (779)
Q Consensus 323 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l-~~L~~L~Ls~n~l~ 390 (779)
..|.++++|+.+.+..+ ...+....|.++ +|+.+.+.++....++ ..+..+ .+++.|.+..+.+.
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 12344455555555333 222333335566 7777777777666643 334555 36777777766544
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.1e-13 Score=133.72 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLR 121 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~ 121 (779)
.+....+++.++++.+.+++. ++ .-..+|..+..+ ++|++|++++|.++.+| .+ .+++|++|+++
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~--~~----------~l~~l~~~~~~l-~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGM--IP----------PIEKMDATLSTL-KACKHLALSTNNIEKIS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBC--CT----------TCCCCHHHHHHT-TTCSEEECSEEEESCCC-CHHHHTTCCEEEEE
T ss_pred HHHhcccccCcchheeEeccc--cC----------cHhhhhHHHhcC-CCCCEEECCCCCCcccc-ccccCCCCCEEECC
Confidence 355666777777766665310 00 001122234444 35666666666665555 33 55556666666
Q ss_pred CCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 122 CSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 122 ~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
+|.++. +|..+..+++|++|++++|.
T Consensus 79 ~n~l~~--------l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 79 RNLIKK--------IENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp EEEECS--------CSSHHHHHHHCSEEEEEEEE
T ss_pred CCCccc--------ccchhhcCCcCCEEECcCCc
Confidence 655554 44444445555555555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.1e-12 Score=128.66 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~------------------------~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK------------------------KIENLDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC------------------------SCSSHHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc------------------------cccchhhcCCcCCE
Confidence 5666666666666666666666 5666666666666665432 12333344566667
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc--ccCCCCCccEEEEecCCCccCCh-----------hccCCC
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ--EIAYLSSLEILYLSGNNFESLPA-----------IIKQMS 400 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~--~l~~l~~L~~L~Ls~n~l~~lp~-----------~l~~l~ 400 (779)
|++++|.+.+. + .+..+++|+.|++++|.++.++. .+..+++|++|++++|.++..+. .+..++
T Consensus 98 L~L~~N~l~~l-~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQIASL-S--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEECCCH-H--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCcCCcC-C--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 77777666553 2 24466777777777777776543 56777788888888877764321 267778
Q ss_pred CCCEEE
Q 004022 401 QLRFIH 406 (779)
Q Consensus 401 ~L~~L~ 406 (779)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 888765
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=3.8e-10 Score=107.74 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=90.6
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcC
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTP 270 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 270 (779)
+.++++++.+..+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567788888888988775 889999999999888778889999999999999998877666678899999999999999
Q ss_pred CCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 271 ITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 271 i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
++.+|.. +..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999886 8999999999999987653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=4.3e-10 Score=106.92 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=91.2
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.+++++|.+..+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677788888888888764 78999999999988887888999999999999999888777777899999999999999
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
.++.+|.. +..+++|+.|+|++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999875 8899999999999987654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=7.7e-09 Score=112.43 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=159.1
Q ss_pred ccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCC
Q 004022 36 GINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPK 113 (779)
Q Consensus 36 ~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~ 113 (779)
...+...+|.++ +|+.+.+..+ ++ .++...+.- .+|+.+.+.. .++.++.. | .+.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~-------------------~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LK-------------------SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CC-------------------EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCT
T ss_pred cCEehHhhcccC-CccEEEeCCC-cc-------------------EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcc
Confidence 356778899986 7999999765 42 455554444 3788888886 67777754 5 888
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCc-C--C
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQI-S--G 188 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~-~--~ 188 (779)
+|+.+++++|+++.+..+ +| ...+|+.+.|..+ ++.++. |.++++|+.+.+..+ +..++.. + .
T Consensus 181 ~L~~l~l~~n~l~~I~~~-------aF-~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~ 248 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPAS-------TF-VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRES 248 (401)
T ss_dssp TCCEEECTTSCCSEECTT-------TT-TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTC
T ss_pred cCCeeecCCCcceEechh-------hE-eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccC
Confidence 999999998888885222 33 3688888888754 455544 667888999988764 3333211 1 5
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCC-----cccccccCCCCCCcEEecccccCCcccchhhhcCccCc
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRL-----KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 262 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~-----~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 262 (779)
+|+.+.+ .+.+..++. .|.++++|+.+.+.++... ..-+..|.++++|+.+.+.. .....-...|.++.+|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 7888888 455666754 7788999999999886543 24455688899999999984 44444566788899999
Q ss_pred EeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCC
Q 004022 263 RIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 263 ~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~ 296 (779)
.+.+..+ ++.++. .|.++ +|+.+++.++....
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 9999654 777765 48888 99999998875544
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=9.4e-09 Score=111.98 Aligned_cols=308 Identities=10% Similarity=0.049 Sum_probs=137.6
Q ss_pred ccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCC
Q 004022 36 GINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPK 113 (779)
Q Consensus 36 ~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~ 113 (779)
...+...||.++++|+.+.|..+ ++ .+.+..+.-..+|+.+++..+ ++.++.. | .+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-------------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~ 117 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-------------------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY 117 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-------------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-------------------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence 44577788888888888888533 42 444443332257888887644 6666544 3 667
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC----CcCCC
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP----QISGK 189 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~----~~~~~ 189 (779)
+|+.+.+..+ ++.+ -..+|.+...++.......... .-..+.++.+|+.+.+..+. ..++ ....+
T Consensus 118 ~L~~i~~p~~-l~~i-------~~~aF~~~~~~~~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 118 ALKSILLPLM-LKSI-------GVEAFKGCDFKEITIPEGVTVI-GDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGK 186 (394)
T ss_dssp TCCCCCCCTT-CCEE-------CTTTTTTCCCSEEECCTTCCEE-CTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTT
T ss_pred cchhhcccCc-eeee-------cceeeecccccccccCcccccc-chhhhcccCCCcEEecCCcc--ceeccccccCCCC
Confidence 7777666543 3332 1223333333332222221111 11124455666666654331 1111 11123
Q ss_pred ccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCC
Q 004022 190 VTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 268 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 268 (779)
|+.+.+..+ +..++. .+.++..|+.+.+..+. ..+........+|+.+.+... ....-...+..+..|+.+.+..
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 333333322 222222 33334444444433221 111111222334444444321 1111122333444444444443
Q ss_pred cCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 269 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 269 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
+...--...+..+..++.+...... + ....+..+.+|+.+.+..+ ...+...
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~----i----------------------~~~~F~~~~~L~~i~l~~~--i~~I~~~ 314 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVI----V----------------------PEKTFYGCSSLTEVKLLDS--VKFIGEE 314 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSE----E----------------------CTTTTTTCTTCCEEEECTT--CCEECTT
T ss_pred CcceeeccccccccccceeccCcee----e----------------------ccccccccccccccccccc--cceechh
Confidence 3222112223444444444333211 0 0112344555666655433 2223334
Q ss_pred hccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLED 409 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~ 409 (779)
.+.++.+|+.+++.++ ++.+. .+|..+.+|+.+++..+ ++.+. .+|.++++|+.+++..
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4556666666666433 44443 34566666666666554 55554 4566666666666644
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=2.6e-09 Score=101.46 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=74.2
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
..+++++++|.++.+|..+ .++|++|+|++|+|+.+ .|..|..+++|++|+|++|++....+. +.++++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL-------EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc-------ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 4578999999999999776 38899999999999885 577788899999999999885433333 34566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCC
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~ 224 (779)
+|++++|.. ..+|. .+..+++|++|++++|.+.
T Consensus 82 ~L~L~~N~l---------------------~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQL---------------------KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcc---------------------CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666665543 44443 3566667777777766543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2.8e-09 Score=101.63 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=73.6
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~ 170 (779)
-+.++++++.++.+|..+. ++|++|+|++|+|+.+ .|..|.++++|++|+|++|++. .+|. +.++++|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKL-------EPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcccc-------CHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhh
Confidence 4689999999999998764 8899999999999875 5777888999999999998744 3443 34566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCC
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 224 (779)
.|++++|.. ..+|.. +..+++|++|++++|.+.
T Consensus 85 ~L~L~~N~l---------------------~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHL---------------------KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCcc---------------------ceeCHHHhccccCCCEEEeCCCCcc
Confidence 666665543 444443 566667777777766543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=8.4e-08 Score=104.40 Aligned_cols=305 Identities=13% Similarity=0.007 Sum_probs=153.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+.+..+.-..+|+.+.+.. .++.|+.. | ++.+|+.+++..+ ++.+ -..+|.++.+|+.+.+..+ +.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~c~~L~~i~~p~~--l~ 129 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMI-------GRCTFSGCYALKSILLPLM--LK 129 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE-------CTTTTTTCTTCCCCCCCTT--CC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEc-------cchhhcccccchhhcccCc--ee
Confidence 45544443335777777753 36666544 4 6777777777644 5543 2234556666766655443 22
Q ss_pred CCC--CCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCC
Q 004022 159 SFP--SNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLR 235 (779)
Q Consensus 159 ~~p--~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 235 (779)
.+. .+.++..++....... ..+ ...|.++++|+.+.+..+ ....-...|.++.
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~-----------------------~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~ 185 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGV-----------------------TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG 185 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTC-----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eecceeeecccccccccCccc-----------------------cccchhhhcccCCCcEEecCCc-cceeccccccCCC
Confidence 221 1223322222221111 111 123444555555555432 1222223344555
Q ss_pred CCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhc
Q 004022 236 SLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAA 315 (779)
Q Consensus 236 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~ 315 (779)
+|+.+.+..+ ....-...+.++..|+.+.+..+.. .+........+|+.+.+... ....-...+..+..|+......
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 5555555432 2222223344445555544433221 11222222334444444321 1111111222222222200011
Q ss_pred ccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-
Q 004022 316 SAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP- 393 (779)
Q Consensus 316 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp- 393 (779)
+........+..+..++.+...... .+...+.++.+|+.+.+.++ +..++ ..+..+.+|+.++|..+ ++.+.
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred CcceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 1111122345566777777765543 34445778999999999765 66654 45788999999999754 77776
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCC-CC---CCccEEEEecC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPE-LP---LCLKYLHLIDC 431 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~-~~---~~L~~L~l~~c 431 (779)
.+|.++++|+.+.+..+ +..++. .+ .+|+.+++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 67899999999999765 344433 22 67888887654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.7e-08 Score=107.79 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=89.2
Q ss_pred EEEecCc-CCcccCcccCCCCCccEEeeeC-CCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 192 RLYLGQS-AIEEVPSSIECLTDLEVLDLRG-CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 192 ~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.++.+++ .+..+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7789999 99999999999996 8877666678999999999999999998888889999999999999999
Q ss_pred CCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 270 PITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 270 ~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.++.+|..+.....|+.|+|.+|++..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 999998874443349999999987654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=8.3e-10 Score=118.88 Aligned_cols=160 Identities=12% Similarity=0.023 Sum_probs=82.4
Q ss_pred CCceEEEccCCCCCCCCCC-----C--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-
Q 004022 91 KKLRYLHWDTYPLRTLPSN-----F--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS- 162 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~-----~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~- 162 (779)
..|++|++++|.++..... + ...+|++|+|++|.++.. + +..-...+++|+.|+|++|.+...-..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--G----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--H----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--H----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 4677777777777643211 1 235777777777776531 1 011112345666677766653221110
Q ss_pred C-----CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCc----ccccccCC
Q 004022 163 N-----LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLK----RISTSFCK 233 (779)
Q Consensus 163 ~-----~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~ 233 (779)
+ ...++|++|+|++|...... ...++..+...++|++|+|++|.+.. .++..+..
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~----------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAG----------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHH----------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHhcCCccceeeCCCCCCChHH----------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 0 12344444444444322100 01234444556667777777766432 22344555
Q ss_pred CCCCcEEecccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 234 LRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.++|++|+|++|.+... ++..+...++|++|++++|.|+
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66677777777665532 3344445566777777776665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=1.1e-09 Score=117.92 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=38.0
Q ss_pred cCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCcc-----CChhccCCCCCCEEEcCCCCCC
Q 004022 351 LGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFES-----LPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 351 ~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
...++|++|+|++|.+++ ++..+...++|++|+|++|.++. +...+...++|++|+|++|++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 345556666666666554 23445555677777777777662 3344556677777777766543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.64 E-value=2e-06 Score=93.34 Aligned_cols=152 Identities=10% Similarity=0.083 Sum_probs=87.8
Q ss_pred ccccChhhhhccc-CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC---CCCCCCC-C
Q 004022 36 GINLDPRAFTNMS-NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP---LRTLPSN-F 110 (779)
Q Consensus 36 ~~~l~~~~f~~l~-~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~---l~~lp~~-~ 110 (779)
...+...||.+++ .|+.+.+-.+ + ..+.+..+.-..+|+.+.+..+. ++.++.. |
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-v-------------------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF 110 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-V-------------------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF 110 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-C-------------------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-e-------------------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhc
Confidence 3467788998885 5888888543 3 24544444333689998887663 6667644 4
Q ss_pred -CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCc-
Q 004022 111 -KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQI- 186 (779)
Q Consensus 111 -~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~- 186 (779)
.+.+|+.+.+..+ ++.+ -..+|..+.+|+.+.+..+ ...+++ +..+..|+.+.+..+ +..+...
T Consensus 111 ~~c~~L~~i~~~~~-~~~I-------~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~a 178 (394)
T 4gt6_A 111 MFCSELTDIPILDS-VTEI-------DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERA 178 (394)
T ss_dssp TTCTTCCBCGGGTT-CSEE-------CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTT
T ss_pred hhcccceeeccCCc-ccee-------hhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEecccc
Confidence 6788888777654 4443 2345678888888888654 233333 556778888877654 2111110
Q ss_pred --CCCccEEEecCcCCcccCcccCCCCCccEEeee
Q 004022 187 --SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLR 219 (779)
Q Consensus 187 --~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 219 (779)
-.+|+.+.+..+....-...+..+..++.....
T Consensus 179 F~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 179 FTGTALTQIHIPAKVTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp TTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred ccccceeEEEECCcccccccchhhhccccceeccc
Confidence 123555554443333223344444555544443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=2.4e-07 Score=98.86 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=45.5
Q ss_pred cccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCc
Q 004022 201 EEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 201 ~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
..++ ..|+.+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..++ |+.|++.+|.+..
T Consensus 45 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 4444 3566666777777777666665565666677777777777666554444455444 7777777777653
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=3.8e-08 Score=105.05 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=53.5
Q ss_pred hHHHhhcCcccccEEEEEeeccccccccc------ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCC
Q 004022 11 SLFLFFFYKGTDAIEGIFLDLSKIKGINL------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN 84 (779)
Q Consensus 11 i~~vL~~~~g~~~i~~i~Ld~s~~~~~~l------~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~ 84 (779)
.+.-+-.......|+.+.++..+...-.. -..+..++++||.|.+..+...+. .........+..
T Consensus 96 ~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---------~is~~~~~~L~~ 166 (362)
T 2ra8_A 96 LMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---------EISWIEQVDLSP 166 (362)
T ss_dssp HHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---------CGGGCBCCBCHH
T ss_pred HHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---------ccccccccCHHH
Confidence 33333345556678888888654221000 123456788999998865432100 000000011222
Q ss_pred CCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCC
Q 004022 85 GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVE 126 (779)
Q Consensus 85 ~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~ 126 (779)
.+..+ ++|+.|.++++.-..++. +.+++|++|+|..+.+.
T Consensus 167 ll~~~-P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 167 VLDAM-PLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTC-TTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCC
T ss_pred HHhcC-CCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCC
Confidence 23334 378888887763223443 34667777777666654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=8.9e-06 Score=88.25 Aligned_cols=287 Identities=12% Similarity=0.116 Sum_probs=147.1
Q ss_pred ecCCCCC-CCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCC---CCCccCCCCcccCccccCCCCCcEEeccCC
Q 004022 81 QLPNGLD-YLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSK---VEQPWEGEKACVPSSIQNFKYLSALSFKGC 154 (779)
Q Consensus 81 ~l~~~l~-~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~---i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n 154 (779)
.+.+..+ .....|+.+.+... ++.|... | ++.+|+.+.+..+. ++.+ -..+|..+.+|+.+.+..+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I-------g~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI-------GRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE-------CTTTTTTCTTCCBCGGGTT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEe-------chhhchhcccceeeccCCc
Confidence 4444433 33235888888653 7777654 5 78889998887653 5554 2345777888887777654
Q ss_pred CCCCCCCC--CCCCCCCcEEEecCCcCccccC----CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc
Q 004022 155 QSLRSFPS--NLHFVCPVTINFSYCVNLIEFP----QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS 228 (779)
Q Consensus 155 ~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~----~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 228 (779)
.+.++. +.++.+|+.+.+.... ..+. ....+|+.+.+..+ +..+........+|+.+.+... ....-.
T Consensus 125 --~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~ 198 (394)
T 4gt6_A 125 --VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGT 198 (394)
T ss_dssp --CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECT
T ss_pred --cceehhhhhhhhccccccccccee--eeecccceecccccccccccce-eeEeccccccccceeEEEECCc-cccccc
Confidence 334433 5667888888876432 1121 11234555555433 3334332223345666555432 122222
Q ss_pred cccCCCCCCcEEecccccCCcccchh-h-------------hcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCC
Q 004022 229 TSFCKLRSLVTLILLGCLNLEHFPEI-L-------------EKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 229 ~~l~~l~~L~~L~L~~~~~~~~~p~~-l-------------~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~ 293 (779)
..+.++.+++........... .... + .....+..+.+. +.++.+.. .|..+..|+.+.+.+..
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC
T ss_pred chhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc
Confidence 334455555555443321110 0000 0 000111111111 11112211 24445555555543311
Q ss_pred CCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cc
Q 004022 294 KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QE 372 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~ 372 (779)
...-...+..+++|+.+.+... ...++...|.++.+|+.+.+..+ ++.+. ..
T Consensus 277 ------------------------~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 277 ------------------------VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp ------------------------CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ------------------------ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 0111223455667777776422 23344455677788888887653 55543 45
Q ss_pred cCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCCC
Q 004022 373 IAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 373 l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 411 (779)
|..+.+|+.+.|..+ ++.+. .+|.++++|+.+++.++.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 677788888888543 66665 567788888887777653
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=2.5e-07 Score=98.65 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred cCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCccc--CCCCCc
Q 004022 136 VPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSI--ECLTDL 213 (779)
Q Consensus 136 lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l--~~l~~L 213 (779)
+...+..+++|+.|+|++|... .++. ..+++|+.|++..|...... ...+ ..+++|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~--------------------l~~l~~~~lp~L 221 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSV--------------------VEDILGSDLPNL 221 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHH--------------------HHHHHHSBCTTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHH--------------------HHHHHHccCCCC
Confidence 3444556677777777766322 2333 23667777777665432110 0111 134555
Q ss_pred cEEeeeCC--CC-----Cccccccc--CCCCCCcEEecccccCCcccchhhh---cCccCcEeecCCcCCCc-----CCc
Q 004022 214 EVLDLRGC--KR-----LKRISTSF--CKLRSLVTLILLGCLNLEHFPEILE---KMEHLKRIYSDRTPITE-----LPS 276 (779)
Q Consensus 214 ~~L~L~~~--~~-----~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p~~l~---~l~~L~~L~L~~n~i~~-----lp~ 276 (779)
+.|+|+.+ .. ...+...+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|.++. ++.
T Consensus 222 ~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp CEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred cEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence 55555321 00 00111111 1355666666665555433322222 35566666666666653 333
Q ss_pred cCCCCCCCCEEeccCCCC
Q 004022 277 SFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~~ 294 (779)
.+..+++|+.|+++.|.+
T Consensus 302 ~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHTTCSEEECCSBBC
T ss_pred hcccCCcceEEECCCCcC
Confidence 344566677777766543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.21 E-value=7.1e-05 Score=80.56 Aligned_cols=268 Identities=9% Similarity=0.017 Sum_probs=117.8
Q ss_pred cccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-CCCCCC
Q 004022 37 INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-FKPKNL 115 (779)
Q Consensus 37 ~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~~l~~L 115 (779)
..+...||.++.+|+.+.|..+ ++ .+.+..+.-. +|+.+.+..+ ++.++.. |...+|
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~~-v~-------------------~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L 115 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVAST-VT-------------------SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDL 115 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECTT-CC-------------------EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCC
T ss_pred cChHHHHhhCCCCCCEEEeCCc-ce-------------------EechhhhcCC-CCceEECCce-eeEeccceeccCCc
Confidence 4566777888888888877543 32 3444333332 5555555432 5555433 344467
Q ss_pred cEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC-----------
Q 004022 116 VELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP----------- 184 (779)
Q Consensus 116 ~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~----------- 184 (779)
+.+.+..+ ++.+. ..+|.+ .+|+.+.+..+-..-....+.++.+++.+.+..........
T Consensus 116 ~~i~lp~~-~~~i~-------~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 116 DDFEFPGA-TTEIG-------NYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp SEEECCTT-CCEEC-------TTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred ccccCCCc-ccccc-------cccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccce
Confidence 77777654 22221 112222 23444444332111111223445555555554432211000
Q ss_pred ----CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 185 ----QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 185 ----~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
.....+..+.+..+........+....+|+.+.+..+ ....-...+.++..|+.+.+..+ ....-...+.++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred eccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 0011222222222222222223344455555555432 12222233455556666655432 22222334555555
Q ss_pred CcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCC
Q 004022 261 LKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
|+.+.+.. .++.++.. +..+++|+.+.+.++.+...- ...|.++.+|+.+.+..+
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-----------------------~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE-----------------------PRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC-----------------------TTTTTTCTTCCEEECCTT
T ss_pred hccccccc-cceeccccccccccccccccccccccceeh-----------------------hhhhcCCCCCCEEEcCcc
Confidence 66655543 24444432 555566666655443221111 122445555666655432
Q ss_pred CCCCccChhhccCCCCCcEEEecC
Q 004022 340 KGLESFPRTFLLGLSAMGLLHISD 363 (779)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (779)
...+....|.++.+|+.+.+..
T Consensus 321 --l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 321 --LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp --CCEECTTTTTTCTTCCCCCCCT
T ss_pred --ccEEHHHHhhCCCCCCEEEECC
Confidence 2223334455666666666543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.04 E-value=0.00012 Score=78.75 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCCCCE
Q 004022 327 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRF 404 (779)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~ 404 (779)
.+..|+.+.+..+ ...+....+.++.+|+.+.+..+ +..++ ..+..+++|+.+.+.++.++.++ ..|.++.+|+.
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 3444444444332 12222333455556666665432 33333 23555666666666666666554 44666666666
Q ss_pred EEcC
Q 004022 405 IHLE 408 (779)
Q Consensus 405 L~Ls 408 (779)
+.|.
T Consensus 315 i~lp 318 (379)
T 4h09_A 315 VTLP 318 (379)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=1.4e-05 Score=76.48 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=61.5
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeec--CCcCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYS--DRTPIT 272 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L--~~n~i~ 272 (779)
+...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +.+.+...++|++|++ ++|.+.
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 444556667788888888775432 333445567788888888776543 4555666777888888 778777
Q ss_pred c-----CCccCCCCCCCCEEeccCCCC
Q 004022 273 E-----LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 273 ~-----lp~~l~~l~~L~~L~L~~~~~ 294 (779)
. +...+...++|+.|++++|.+
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3 444556667888888887754
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=9.8e-06 Score=77.69 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=31.9
Q ss_pred CCCccEEeeeCCCCCcc----cccccCCCCCCcEEec--ccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 210 LTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLIL--LGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 210 l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L--~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+.|++|+|++|.+... +...+...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555544321 2333444555666666 44544432 3344445566666666666554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=3.2e-05 Score=72.46 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 105 TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 105 ~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
.+|... .-.+|++||++++.|+.. |. ..+..+++|++|+|++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~--GL-----~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSI--GF-----DHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGG--GG-----GGGTTCSCCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCCccHH--HH-----HHhcCCCCCCEEEeCCCCc
Confidence 344443 334677777777776642 21 2344666666666666653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=9e-05 Score=69.37 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=61.1
Q ss_pred ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc-ccchhhhcC----ccCcEeecCCcC-CCcC-
Q 004022 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKM----EHLKRIYSDRTP-ITEL- 274 (779)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l----~~L~~L~L~~n~-i~~l- 274 (779)
.+|.....-.+|+.||+++|.+...--..+.++++|++|+|++|...+ .--..+..+ ++|++|++++|. |+.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 344433223468888888887554434446778888888888886443 333445553 468888888864 6621
Q ss_pred CccCCCCCCCCEEeccCCCCCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~ 296 (779)
-..+..+++|+.|++++|...+
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 1235678999999999986543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00012 Score=74.01 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCCCcEEEecCCCCccCC---cccCCCCCccEEEEecCCCccCChhccCCC--CCCEEEcCCCCCCCcCC
Q 004022 352 GLSAMGLLHISDYAVREIP---QEIAYLSSLEILYLSGNNFESLPAIIKQMS--QLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~~~~~~~ 417 (779)
.+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++.+. .+..+. +|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4566666666666666532 34456677777777777776552 223333 67777777777665544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00024 Score=71.61 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=25.8
Q ss_pred CccEEEecCcCCccc---CcccCCCCCccEEeeeCCCCCcccccccCCCC--CCcEEecccccCCc
Q 004022 189 KVTRLYLGQSAIEEV---PSSIECLTDLEVLDLRGCKRLKRISTSFCKLR--SLVTLILLGCLNLE 249 (779)
Q Consensus 189 ~L~~L~L~~n~i~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~L~~~~~~~ 249 (779)
+|+.|+|++|.+..+ |..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 344444444444332 23344555555555555554332 1122222 55555555555444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.81 E-value=0.012 Score=52.28 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=42.5
Q ss_pred cEEEecCCCCc--cCCcccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCC
Q 004022 357 GLLHISDYAVR--EIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 357 ~~L~Ls~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 412 (779)
..++.+++.++ .+|..+ .++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777788887 777643 2578999999999998884 578889999988888875
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.73 E-value=0.019 Score=50.80 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=40.0
Q ss_pred EEEccCCCCC--CCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 95 YLHWDTYPLR--TLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 95 ~L~l~~n~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.+ -+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l-------~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTAL-------PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSC-------CTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCcc-------ChhhhhhccccCEEEecCCCe
Confidence 6777888887 888654 24688888888888875 334566788888888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.017 Score=54.92 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=47.4
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeecCCc---CC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRT---PI 271 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n---~i 271 (779)
+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+... +.+.+..-+.|++|+|+++ .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 334445556666677766665422 222333455667777766665532 2334444556777777644 22
Q ss_pred C-----cCCccCCCCCCCCEEeccCC
Q 004022 272 T-----ELPSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 272 ~-----~lp~~l~~l~~L~~L~L~~~ 292 (779)
. .+...+..-+.|+.|+++.+
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 12233444566777776553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.57 E-value=0.027 Score=53.58 Aligned_cols=83 Identities=10% Similarity=0.062 Sum_probs=44.4
Q ss_pred CccccCeeeccCC-CCCCcc---ChhhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc-----cC
Q 004022 327 LSNMLRSLDSSHC-KGLESF---PRTFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SL 392 (779)
Q Consensus 327 ~l~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~l 392 (779)
.-+.|++|+++++ .+...- -...+..-..|+.|+|++|.+.+ +...+..-+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777777765 433210 01113455667777777776665 2333444566666666666665 23
Q ss_pred ChhccCCCCCCEEEcCC
Q 004022 393 PAIIKQMSQLRFIHLED 409 (779)
Q Consensus 393 p~~l~~l~~L~~L~Ls~ 409 (779)
-..+..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 33444555566655543
Done!