Query 004023
Match_columns 778
No_of_seqs 219 out of 771
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 96.8 0.0048 1.6E-07 66.4 11.0 105 205-321 98-208 (444)
2 4djk_A Probable glutamate/gamm 96.8 0.041 1.4E-06 60.3 18.3 102 231-337 130-239 (511)
3 3l1l_A Arginine/agmatine antip 96.0 0.04 1.4E-06 59.1 12.3 81 232-320 126-210 (445)
4 2bm3_A Type 2 cohesin, scaffol 22.8 22 0.00076 34.7 0.7 14 277-290 43-56 (166)
5 3kcp_B Cellulosome anchoring p 22.5 23 0.00078 35.2 0.7 14 277-290 55-68 (187)
6 3bwz_A Cellulosomal scaffoldin 17.0 35 0.0012 33.7 0.7 12 278-289 42-53 (181)
7 2od6_A Hypothetical protein; m 15.4 1.4E+02 0.0049 26.2 4.0 31 612-647 46-76 (110)
8 2rdd_B UPF0092 membrane protei 14.2 2.7E+02 0.0091 20.5 4.7 31 511-541 1-31 (37)
9 3knb_B Obscurin-like protein 1 13.7 76 0.0026 27.2 1.9 20 613-632 71-90 (107)
10 3ghp_A Cellulosomal scaffoldin 13.5 50 0.0017 33.6 0.7 6 631-636 122-127 (227)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.81 E-value=0.0048 Score=66.40 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=56.2
Q ss_pred cccchhhhhhhhcccccccCCCCCC-eeehhHHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHhhhhhhccccC
Q 004023 205 VLTPCISVLSAVGGIKEASAGMTQD-KVVWVSVAIIVLLFMVQRFGTDKVGY---SFAPIICVWFSLIGGIGIYNFIKYD 280 (778)
Q Consensus 205 vlTPAISVLSAVeGl~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kVg~---~F~PImllWF~~i~~iGiyni~~~~ 280 (778)
+++.|....+..+-++...|...++ ....+++++++++..+..+|+...++ .+..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3455555555444444333332211 23457788888888899999876665 444444444444455555543 3
Q ss_pred cceeee-cChHHHHHHHhhcChh-HHHhhhhhhhhhccccccc
Q 004023 281 PSVIKA-INPKYIVDYFTRNKKD-AWISLGGVVLAITGTEALF 321 (778)
Q Consensus 281 p~Vl~A-~nP~y~~~ff~~~g~~-~~~~LG~v~L~iTG~EAlf 321 (778)
|+-+.. ++| ++.. -+..+..++.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~---------~g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAP---------SAVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSH---------HHHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCC---------cchHHHHHHHHHHHHHHHhHHHHH
Confidence 443221 222 2222 2334555678889999753
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.79 E-value=0.041 Score=60.30 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=55.3
Q ss_pred eehhHHHHHHHHHHHhhhcccccccchhhH----HHHHHHHHHhhhhhhccccCcceeeecChHHHHHHHhhc--ChhHH
Q 004023 231 VVWVSVAIIVLLFMVQRFGTDKVGYSFAPI----ICVWFSLIGGIGIYNFIKYDPSVIKAINPKYIVDYFTRN--KKDAW 304 (778)
Q Consensus 231 Vv~is~~ILv~LF~iQ~~GT~kVg~~F~PI----mllWF~~i~~iGiyni~~~~p~Vl~A~nP~y~~~ff~~~--g~~~~ 304 (778)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-++ .|+ +.+..+ +...|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHH
Confidence 556788888888999999998777644321 2223444556677665543332211 111 111111 23457
Q ss_pred HhhhhhhhhhcccccccccCCCC--Cccceeeehh
Q 004023 305 ISLGGVVLAITGTEALFADVGHF--TVQSIQLSMC 337 (778)
Q Consensus 305 ~~LG~v~L~iTG~EAlfADlGHF--~~~~Iq~a~~ 337 (778)
..+..++.+.+|-|+.-.=-+-. .+|.+..+-.
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 77888999999999864433333 2455554443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.03 E-value=0.04 Score=59.11 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=42.2
Q ss_pred ehhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHhhhhhhccccCccee-eecChHHHHHHHhhcChhHHHhh
Q 004023 232 VWVSVAIIVLLFMVQRFGTDKVGYS---FAPIICVWFSLIGGIGIYNFIKYDPSVI-KAINPKYIVDYFTRNKKDAWISL 307 (778)
Q Consensus 232 v~is~~ILv~LF~iQ~~GT~kVg~~---F~PImllWF~~i~~iGiyni~~~~p~Vl-~A~nP~y~~~ff~~~g~~~~~~L 307 (778)
..+++++++++..+--+|....+++ +.++.++=++.+.+.|+. ..+++.+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc-----cHHHHHHHH
Confidence 4467777777888888888777664 444443333333344443 3345443 344443110 112234556
Q ss_pred hhhhhhhcccccc
Q 004023 308 GGVVLAITGTEAL 320 (778)
Q Consensus 308 G~v~L~iTG~EAl 320 (778)
..++.+.+|-|+.
T Consensus 198 ~~~~~af~G~e~~ 210 (445)
T 3l1l_A 198 NVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHTTTTTTHH
T ss_pred HHHHHHHHhHHHH
Confidence 6678888999965
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=22.77 E-value=22 Score=34.73 Aligned_cols=14 Identities=50% Similarity=1.042 Sum_probs=11.1
Q ss_pred cccCcceeeecChH
Q 004023 277 IKYDPSVIKAINPK 290 (778)
Q Consensus 277 ~~~~p~Vl~A~nP~ 290 (778)
+||||.||+|.||.
T Consensus 43 IKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 43 IVYDPKVLMAVDPE 56 (166)
T ss_dssp EECCTTTEEEECTT
T ss_pred EEECccceEeecCC
Confidence 46888888888883
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=22.54 E-value=23 Score=35.15 Aligned_cols=14 Identities=50% Similarity=1.042 Sum_probs=10.5
Q ss_pred cccCcceeeecChH
Q 004023 277 IKYDPSVIKAINPK 290 (778)
Q Consensus 277 ~~~~p~Vl~A~nP~ 290 (778)
+||||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 45788888888875
No 6
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=17.02 E-value=35 Score=33.69 Aligned_cols=12 Identities=42% Similarity=1.010 Sum_probs=6.1
Q ss_pred ccCcceeeecCh
Q 004023 278 KYDPSVIKAINP 289 (778)
Q Consensus 278 ~~~p~Vl~A~nP 289 (778)
||||.||+|+||
T Consensus 42 KYDP~VLQaV~~ 53 (181)
T 3bwz_A 42 KYDPAVLQPVTS 53 (181)
T ss_dssp ECCTTTEEEECT
T ss_pred ccChhHeeeecC
Confidence 345555555554
No 7
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=15.36 E-value=1.4e+02 Score=26.16 Aligned_cols=31 Identities=39% Similarity=0.646 Sum_probs=25.2
Q ss_pred eEEEEEecCCCCCEEEEEEEeecccCCCChhhHHHH
Q 004023 612 RFLFRRVEPRELNVFRCVARYGYTDARNEEEPFERM 647 (778)
Q Consensus 612 Rflv~~v~~~~~~~yRcv~RYGY~D~~~~~~~Fe~~ 647 (778)
+|...|+-.|+ .+||++..|-|+|. ..||.-
T Consensus 46 kfsmnrvwnkg-evfrvvmtyeykdr----asfean 76 (110)
T 2od6_A 46 KFSMNRVWNKG-EVFRVVMTYEYKDR----ASFEAN 76 (110)
T ss_dssp EEEEEEECSSS-SCEEEEEEEEESSH----HHHHHH
T ss_pred hhhhhhhccCC-cEEEEEEEEEeccc----hhhhhh
Confidence 56778887766 79999999999986 457765
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.21 E-value=2.7e+02 Score=20.48 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=15.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004023 511 GGYLPLAFAAVLMTIMYIWNNVYRRKYYFEL 541 (778)
Q Consensus 511 GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~ 541 (778)
|||..++.-++++++||..-.-..+|.+.+.
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555666544433344433333
No 9
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=13.70 E-value=76 Score=27.20 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=14.5
Q ss_pred EEEEEecCCCCCEEEEEEEe
Q 004023 613 FLFRRVEPRELNVFRCVARY 632 (778)
Q Consensus 613 flv~~v~~~~~~~yRcv~RY 632 (778)
+.+..+...+.|.|+|+++=
T Consensus 71 L~I~~v~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 71 LLLTAALPTDAGVYVCRARN 90 (107)
T ss_dssp EEESSCCGGGCEEEEEEEEE
T ss_pred EEEecCChhhCEEEEEEEEE
Confidence 45556666677999999873
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=13.46 E-value=50 Score=33.64 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.4
Q ss_pred Eeeccc
Q 004023 631 RYGYTD 636 (778)
Q Consensus 631 RYGY~D 636 (778)
--|||-
T Consensus 122 vIgFKV 127 (227)
T 3ghp_A 122 VVGFKV 127 (227)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 334443
Done!