Query 004023
Match_columns 778
No_of_seqs 219 out of 771
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 11:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 18.9 14 0.001 33.7 0.7 14 277-290 39-52 (162)
2 d2yvxa3 f.57.1.1 (A:276-448) M 15.9 36 0.0026 31.1 2.7 121 341-474 11-133 (173)
3 d1tyja1 b.2.2.2 (A:2-171) Cell 14.8 17 0.0013 33.3 0.2 13 278-290 38-50 (170)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 14.7 26 0.0019 26.7 1.2 39 343-383 16-54 (57)
5 d1zv9a1 b.2.2.2 (A:3-173) Cell 13.2 24 0.0018 32.3 0.7 12 278-289 40-51 (171)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 10.2 80 0.0058 20.3 2.2 20 512-531 5-24 (27)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 8.8 74 0.0054 25.7 2.2 26 610-635 57-82 (103)
8 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.6 88 0.0064 24.1 2.1 29 609-637 47-75 (89)
9 d2c9aa1 b.1.1.4 (A:184-279) Re 7.2 98 0.0071 23.6 2.2 22 612-633 61-82 (96)
10 d1f97a1 b.1.1.1 (A:27-128) Jun 6.9 93 0.0068 24.0 1.9 24 613-636 67-90 (102)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=18.90 E-value=14 Score=33.71 Aligned_cols=14 Identities=50% Similarity=1.042 Sum_probs=9.9
Q ss_pred cccCcceeeecChH
Q 004023 277 IKYDPSVIKAINPK 290 (778)
Q Consensus 277 ~~~~p~Vl~A~nP~ 290 (778)
+||||.||+|+||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 45777777777775
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=15.87 E-value=36 Score=31.07 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=68.5
Q ss_pred HHHHHHhhccc--hhhhccCCccccccccccccccchHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHhCCCcceeEEec
Q 004023 341 YPALILAYMGQ--ASFLRKHSELVSETFYKSIPHSLYWPMFIVAVMAAIIASQAMISGTFSIVQQSISLGCFPRVKVVHT 418 (778)
Q Consensus 341 ~P~LlL~Y~GQ--aA~L~~~p~~~~n~Fy~siP~~~~wP~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvHT 418 (778)
+|-|+++.+|+ +|+++.+-|+.-+.+-. =..|.|+ ++-++.-++||+.. ++-+++++|-+-+-..
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~~--- 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRDW--- 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSSH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchhH---
Confidence 35555555555 45666655554332211 2356776 66688888999864 7889999996432110
Q ss_pred CCccCCceeechhHHHHHHHhheeEEeecCcchhhhhhhhhhHHHHHHHHHHHHHH
Q 004023 419 SAKYEGQVYIPEINYLLMIACVCVTVGFRTTEKIGNAYGIAVVFVMTLTSTLLVLI 474 (778)
Q Consensus 419 S~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~vM~iTT~L~~~v 474 (778)
-+...-++.+-.+|=+.+-..+.....+.....++-+=|++...+|++.+++=+++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123445666667655555444444455555566666666666666665544433
No 3
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=14.82 E-value=17 Score=33.32 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=7.3
Q ss_pred ccCcceeeecChH
Q 004023 278 KYDPSVIKAINPK 290 (778)
Q Consensus 278 ~~~p~Vl~A~nP~ 290 (778)
||||.||+|.||.
T Consensus 38 KYDP~vLQ~V~p~ 50 (170)
T d1tyja1 38 KYNTTYLQPWDTI 50 (170)
T ss_dssp ECCTTTEEEEETT
T ss_pred eeChHHeecccCC
Confidence 4555555555554
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.72 E-value=26 Score=26.67 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHhhccchhhhccCCccccccccccccccchHHHHHHHH
Q 004023 343 ALILAYMGQASFLRKHSELVSETFYKSIPHSLYWPMFIVAV 383 (778)
Q Consensus 343 ~LlL~Y~GQaA~L~~~p~~~~n~Fy~siP~~~~wP~~vlAt 383 (778)
++++--++=+.|+..+.. .+.-|.++|+.++|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 333444455567777654 334489999999997665443
No 5
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=13.20 E-value=24 Score=32.34 Aligned_cols=12 Identities=42% Similarity=1.010 Sum_probs=5.8
Q ss_pred ccCcceeeecCh
Q 004023 278 KYDPSVIKAINP 289 (778)
Q Consensus 278 ~~~p~Vl~A~nP 289 (778)
||||.||+|.||
T Consensus 40 KYDP~vLQ~V~~ 51 (171)
T d1zv9a1 40 KYDPAVLQPVTS 51 (171)
T ss_dssp ECCTTTEEEECT
T ss_pred eeChHHeeccCC
Confidence 345555555444
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.20 E-value=80 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 004023 512 GYLPLAFAAVLMTIMYIWNN 531 (778)
Q Consensus 512 GW~pl~ia~v~~~iM~~W~~ 531 (778)
||+.|+.-.--..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 67777766666667777743
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.75 E-value=74 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCCCEEEEEEEeecc
Q 004023 610 EERFLFRRVEPRELNVFRCVARYGYT 635 (778)
Q Consensus 610 ~ERflv~~v~~~~~~~yRcv~RYGY~ 635 (778)
+..+.+..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888899999999998764
No 8
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.64 E-value=88 Score=24.08 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCCCCEEEEEEEeecccC
Q 004023 609 AEERFLFRRVEPRELNVFRCVARYGYTDA 637 (778)
Q Consensus 609 ~~ERflv~~v~~~~~~~yRcv~RYGY~D~ 637 (778)
....+.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 45678888888888899999999887543
No 9
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=98 Score=23.64 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=17.7
Q ss_pred eEEEEEecCCCCCEEEEEEEee
Q 004023 612 RFLFRRVEPRELNVFRCVARYG 633 (778)
Q Consensus 612 Rflv~~v~~~~~~~yRcv~RYG 633 (778)
.+.+..+.+.+.|.|+|++.=.
T Consensus 61 ~L~I~~v~~~D~G~Y~C~a~N~ 82 (96)
T d2c9aa1 61 SFNVVNTTKRDAGKYRCMIRTE 82 (96)
T ss_dssp EEEECSCCGGGCSEEEEEEEET
T ss_pred EEEECCCCHHHCeEEEEEEEeC
Confidence 4677888888889999999643
No 10
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.94 E-value=93 Score=23.96 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=19.3
Q ss_pred EEEEEecCCCCCEEEEEEEeeccc
Q 004023 613 FLFRRVEPRELNVFRCVARYGYTD 636 (778)
Q Consensus 613 flv~~v~~~~~~~yRcv~RYGY~D 636 (778)
..+.++...+.|.|+|.++-.+..
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~ 90 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQ 90 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSS
T ss_pred EEEeECCccCCEEEEEEEEECCCC
Confidence 567778888899999999876644
Done!