Query 004024
Match_columns 778
No_of_seqs 978 out of 5171
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 16:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-149 1E-153 1332.7 74.7 682 92-776 121-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-134 6E-139 1178.4 63.9 600 152-778 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.8E-77 6.1E-82 714.6 59.1 584 63-693 53-659 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.9E-65 6.4E-70 599.2 54.2 541 121-697 368-964 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-64 3.1E-69 593.4 46.7 499 63-576 372-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.5E-64 7.7E-69 587.8 47.4 449 90-541 85-561 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 3.7E-42 8E-47 297.9 7.7 106 645-768 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-33 9.3E-38 339.1 54.4 564 70-640 270-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 8.5E-33 1.8E-37 336.5 54.8 564 67-637 233-831 (899)
10 PRK11447 cellulose synthase su 99.9 2E-22 4.4E-27 247.6 57.0 407 223-641 276-744 (1157)
11 PRK11447 cellulose synthase su 99.9 7E-22 1.5E-26 242.9 49.0 564 68-639 35-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 3.8E-20 8.1E-25 217.5 51.0 550 71-636 54-738 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.2E-23 204.2 55.1 522 103-638 55-706 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.3E-19 5E-24 187.0 30.5 343 247-630 150-511 (966)
15 PRK11788 tetratricopeptide rep 99.8 5.7E-18 1.2E-22 185.5 27.8 263 342-646 71-355 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 7E-18 1.5E-22 176.1 26.0 408 222-637 54-484 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 7.5E-17 1.6E-21 186.5 37.1 247 385-637 308-570 (615)
18 PRK11788 tetratricopeptide rep 99.8 2.3E-18 5.1E-23 188.6 22.8 268 249-524 71-364 (389)
19 PRK10049 pgaA outer membrane p 99.8 2.9E-16 6.3E-21 184.9 33.4 376 229-638 28-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.4E-20 175.5 38.9 208 416-637 375-596 (615)
21 PRK15174 Vi polysaccharide exp 99.8 1.1E-15 2.3E-20 176.4 34.2 345 258-609 16-386 (656)
22 KOG2002 TPR-containing nuclear 99.7 1.1E-14 2.3E-19 160.7 32.8 487 73-569 176-742 (1018)
23 PRK15174 Vi polysaccharide exp 99.7 7E-15 1.5E-19 169.7 33.2 341 290-639 17-382 (656)
24 KOG2002 TPR-containing nuclear 99.7 2.3E-14 4.9E-19 158.2 34.7 516 108-637 146-744 (1018)
25 PRK10049 pgaA outer membrane p 99.7 1.1E-14 2.4E-19 171.6 35.1 390 160-612 21-464 (765)
26 PRK14574 hmsH outer membrane p 99.7 1E-13 2.2E-18 160.3 39.9 427 194-638 43-513 (822)
27 PRK14574 hmsH outer membrane p 99.7 1.2E-13 2.6E-18 159.8 39.1 436 132-612 43-521 (822)
28 KOG4422 Uncharacterized conser 99.5 4.3E-11 9.3E-16 121.0 32.4 335 259-603 191-589 (625)
29 KOG2076 RNA polymerase III tra 99.5 6.2E-10 1.3E-14 123.0 43.0 570 66-638 144-849 (895)
30 KOG2003 TPR repeat-containing 99.5 6.3E-12 1.4E-16 127.3 25.2 448 160-625 207-710 (840)
31 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.8E-18 142.4 11.8 254 378-636 15-275 (280)
32 KOG2076 RNA polymerase III tra 99.5 2.6E-11 5.7E-16 133.6 26.8 110 540-649 411-523 (895)
33 KOG0495 HAT repeat protein [RN 99.4 1.4E-09 3.1E-14 115.6 37.5 477 167-655 389-895 (913)
34 KOG1915 Cell cycle control pro 99.4 2.8E-09 6E-14 109.4 35.6 469 135-636 85-623 (677)
35 KOG1126 DNA-binding cell divis 99.4 2.2E-11 4.9E-16 130.4 20.1 272 294-607 335-623 (638)
36 KOG0495 HAT repeat protein [RN 99.4 6.7E-09 1.5E-13 110.6 37.5 475 132-617 385-893 (913)
37 KOG4422 Uncharacterized conser 99.4 2.6E-09 5.7E-14 108.3 31.2 426 92-569 116-587 (625)
38 KOG1126 DNA-binding cell divis 99.3 6.9E-11 1.5E-15 126.7 20.4 242 387-637 335-585 (638)
39 KOG0547 Translocase of outer m 99.3 1.3E-09 2.9E-14 112.3 27.8 183 449-636 368-564 (606)
40 KOG2003 TPR repeat-containing 99.3 1.4E-10 3.1E-15 117.7 20.3 422 129-556 207-707 (840)
41 PRK10747 putative protoheme IX 99.3 4.9E-10 1.1E-14 122.1 24.8 252 320-605 129-391 (398)
42 TIGR00540 hemY_coli hemY prote 99.3 2E-09 4.4E-14 117.9 29.4 285 289-603 95-398 (409)
43 KOG1155 Anaphase-promoting com 99.3 5.2E-09 1.1E-13 107.5 29.2 350 308-684 163-522 (559)
44 PRK10747 putative protoheme IX 99.3 8.7E-10 1.9E-14 120.2 25.2 244 382-635 129-387 (398)
45 KOG1915 Cell cycle control pro 99.3 5.2E-08 1.1E-12 100.3 35.7 405 74-479 86-547 (677)
46 KOG1155 Anaphase-promoting com 99.3 5.8E-08 1.3E-12 100.0 36.0 122 441-566 364-489 (559)
47 TIGR00540 hemY_coli hemY prote 99.2 1.2E-09 2.6E-14 119.7 23.7 277 258-569 95-396 (409)
48 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.7E-16 89.4 6.7 50 470-519 1-50 (50)
49 TIGR02521 type_IV_pilW type IV 99.2 1E-09 2.2E-14 110.2 21.4 197 439-637 29-231 (234)
50 KOG1173 Anaphase-promoting com 99.2 6.9E-08 1.5E-12 101.9 34.4 258 338-636 242-516 (611)
51 KOG2047 mRNA splicing factor [ 99.2 3.2E-07 7E-12 98.0 39.5 305 92-398 102-452 (835)
52 PF13429 TPR_15: Tetratricopep 99.2 4.8E-11 1E-15 124.1 10.9 249 347-603 15-276 (280)
53 KOG3616 Selective LIM binding 99.2 4.2E-08 9.1E-13 105.3 31.0 372 66-471 620-1025(1636)
54 COG2956 Predicted N-acetylgluc 99.1 1.5E-08 3.2E-13 99.7 23.3 303 291-660 48-369 (389)
55 PF13041 PPR_2: PPR repeat fam 99.1 4.2E-11 9.1E-16 87.9 3.3 50 369-418 1-50 (50)
56 KOG2047 mRNA splicing factor [ 99.1 4.1E-06 8.9E-11 89.8 41.1 448 69-535 110-614 (835)
57 KOG4318 Bicoid mRNA stability 99.1 1.1E-07 2.4E-12 105.0 30.3 467 120-648 22-603 (1088)
58 KOG3616 Selective LIM binding 99.1 2.8E-06 6.1E-11 91.7 38.6 408 160-639 563-1025(1636)
59 PRK12370 invasion protein regu 99.1 1.6E-08 3.5E-13 115.2 23.7 211 420-638 318-535 (553)
60 KOG1173 Anaphase-promoting com 99.1 3.9E-07 8.6E-12 96.3 30.8 446 90-586 47-533 (611)
61 KOG2376 Signal recognition par 99.0 1.3E-06 2.9E-11 92.9 34.3 182 442-631 310-513 (652)
62 COG2956 Predicted N-acetylgluc 99.0 6.9E-08 1.5E-12 95.1 22.5 209 168-400 49-278 (389)
63 COG3071 HemY Uncharacterized e 99.0 2.3E-07 4.9E-12 94.4 25.1 279 291-603 97-389 (400)
64 KOG0985 Vesicle coat protein c 99.0 3.2E-05 7E-10 86.7 43.5 258 455-748 1089-1361(1666)
65 TIGR02521 type_IV_pilW type IV 99.0 1.1E-07 2.3E-12 95.4 23.2 197 372-606 32-234 (234)
66 PRK11189 lipoprotein NlpI; Pro 99.0 4.5E-08 9.8E-13 102.1 20.8 211 420-639 40-266 (296)
67 KOG0547 Translocase of outer m 99.0 7E-07 1.5E-11 92.7 27.5 182 450-636 335-530 (606)
68 KOG4318 Bicoid mRNA stability 98.9 2.1E-08 4.7E-13 110.4 16.8 263 392-694 11-274 (1088)
69 PRK12370 invasion protein regu 98.9 9.1E-08 2E-12 109.1 22.6 177 454-637 317-501 (553)
70 KOG1840 Kinesin light chain [C 98.9 1E-07 2.3E-12 103.7 20.1 191 446-636 246-477 (508)
71 KOG1174 Anaphase-promoting com 98.8 5E-06 1.1E-10 84.7 28.4 267 337-609 229-505 (564)
72 KOG2376 Signal recognition par 98.8 5.3E-06 1.2E-10 88.4 29.7 120 342-467 311-443 (652)
73 COG3071 HemY Uncharacterized e 98.8 1.1E-06 2.5E-11 89.4 23.8 250 384-638 97-357 (400)
74 COG3063 PilF Tfp pilus assembl 98.8 2.8E-07 6.1E-12 87.0 16.9 161 475-640 38-204 (250)
75 PRK11189 lipoprotein NlpI; Pro 98.8 6.6E-07 1.4E-11 93.4 21.8 226 385-618 40-280 (296)
76 KOG1840 Kinesin light chain [C 98.8 3.9E-07 8.5E-12 99.3 20.5 200 376-603 246-478 (508)
77 KOG1127 TPR repeat-containing 98.8 3E-06 6.6E-11 95.0 27.4 293 339-635 774-1101(1238)
78 KOG1129 TPR repeat-containing 98.7 3.3E-07 7.2E-12 90.3 15.9 228 375-639 227-459 (478)
79 KOG3617 WD40 and TPR repeat-co 98.7 0.00014 3E-09 80.2 37.2 231 71-321 738-1005(1416)
80 KOG3785 Uncharacterized conser 98.7 8.9E-06 1.9E-10 81.2 25.5 157 476-645 363-521 (557)
81 KOG4162 Predicted calmodulin-b 98.7 1.5E-05 3.3E-10 87.6 29.6 405 215-637 322-782 (799)
82 KOG1174 Anaphase-promoting com 98.7 0.00016 3.4E-09 74.1 32.6 401 246-683 96-519 (564)
83 KOG0624 dsRNA-activated protei 98.6 2.9E-05 6.3E-10 77.4 25.7 204 285-508 45-257 (504)
84 KOG3785 Uncharacterized conser 98.6 6.7E-05 1.5E-09 75.1 27.7 122 419-547 372-498 (557)
85 KOG3617 WD40 and TPR repeat-co 98.6 0.00012 2.6E-09 80.7 31.2 394 120-570 723-1172(1416)
86 KOG4162 Predicted calmodulin-b 98.6 2.6E-05 5.7E-10 85.8 26.3 415 182-610 320-789 (799)
87 KOG0548 Molecular co-chaperone 98.6 4.1E-05 8.9E-10 81.1 25.9 209 414-637 232-454 (539)
88 cd05804 StaR_like StaR_like; a 98.5 3.4E-05 7.4E-10 83.3 26.7 295 342-639 8-337 (355)
89 KOG1129 TPR repeat-containing 98.5 2.3E-06 5E-11 84.5 14.6 218 282-500 227-457 (478)
90 PF04733 Coatomer_E: Coatomer 98.5 6.7E-06 1.4E-10 84.7 18.9 156 443-637 104-264 (290)
91 KOG1156 N-terminal acetyltrans 98.5 0.00033 7.1E-09 76.0 31.1 129 470-602 367-509 (700)
92 PF12569 NARP1: NMDA receptor- 98.5 7.9E-05 1.7E-09 82.5 27.6 172 424-603 129-333 (517)
93 COG3063 PilF Tfp pilus assembl 98.5 3.3E-05 7.2E-10 73.3 20.8 197 376-611 40-243 (250)
94 KOG1127 TPR repeat-containing 98.5 0.00013 2.8E-09 82.4 28.7 292 338-635 815-1135(1238)
95 KOG0985 Vesicle coat protein c 98.5 0.003 6.5E-08 71.7 38.9 191 354-569 1089-1305(1666)
96 KOG1125 TPR repeat-containing 98.5 3.3E-06 7.1E-11 90.0 15.1 196 438-636 316-525 (579)
97 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.6E-12 60.9 4.4 34 435-468 1-34 (34)
98 cd05804 StaR_like StaR_like; a 98.4 0.0002 4.4E-09 77.2 28.3 165 441-605 148-337 (355)
99 KOG1156 N-terminal acetyltrans 98.4 0.00058 1.3E-08 74.1 30.2 168 245-414 73-260 (700)
100 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.1E-10 79.7 18.8 179 440-638 32-232 (235)
101 PF12854 PPR_1: PPR repeat 98.4 4.9E-07 1.1E-11 59.6 4.3 33 538-570 2-34 (34)
102 PRK04841 transcriptional regul 98.4 0.00021 4.6E-09 87.5 30.7 352 287-638 350-760 (903)
103 PF04733 Coatomer_E: Coatomer 98.4 1.5E-05 3.3E-10 82.1 17.3 151 348-536 110-265 (290)
104 KOG0548 Molecular co-chaperone 98.4 0.0029 6.2E-08 67.6 33.5 174 447-631 304-482 (539)
105 PRK15359 type III secretion sy 98.3 1.2E-05 2.6E-10 74.0 13.6 121 493-620 14-137 (144)
106 PF12569 NARP1: NMDA receptor- 98.3 7.8E-05 1.7E-09 82.6 22.3 257 347-640 11-293 (517)
107 PLN02789 farnesyltranstransfer 98.3 8E-05 1.7E-09 77.8 21.3 176 443-622 73-268 (320)
108 KOG1070 rRNA processing protei 98.3 5.4E-05 1.2E-09 88.1 20.3 199 438-640 1455-1665(1710)
109 KOG1914 mRNA cleavage and poly 98.2 0.0027 5.8E-08 67.7 30.1 175 387-562 347-529 (656)
110 PRK04841 transcriptional regul 98.2 0.0015 3.2E-08 80.1 32.9 355 254-608 348-764 (903)
111 PRK15363 pathogenicity island 98.2 2.2E-05 4.8E-10 71.1 12.2 119 542-683 34-154 (157)
112 PRK10370 formate-dependent nit 98.2 8E-05 1.7E-09 72.4 17.0 117 520-638 52-173 (198)
113 KOG1125 TPR repeat-containing 98.2 9.3E-05 2E-09 79.2 18.3 211 320-534 296-525 (579)
114 PRK15359 type III secretion sy 98.2 5.2E-05 1.1E-09 69.7 14.4 98 539-638 22-121 (144)
115 TIGR03302 OM_YfiO outer membra 98.2 0.00013 2.8E-09 73.7 18.6 179 408-606 35-234 (235)
116 KOG4340 Uncharacterized conser 98.1 0.0011 2.4E-08 65.2 23.2 398 219-636 13-441 (459)
117 TIGR00756 PPR pentatricopeptid 98.1 3.9E-06 8.4E-11 56.0 4.6 35 473-507 1-35 (35)
118 KOG1128 Uncharacterized conser 98.1 5.8E-05 1.3E-09 82.7 15.1 215 341-605 399-617 (777)
119 KOG1128 Uncharacterized conser 98.1 0.00015 3.4E-09 79.5 17.5 188 436-638 393-582 (777)
120 KOG4340 Uncharacterized conser 98.1 0.00023 5E-09 69.8 16.7 166 451-633 154-334 (459)
121 KOG1070 rRNA processing protei 98.1 0.00023 4.9E-09 83.1 19.4 200 308-508 1457-1670(1710)
122 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 55.4 3.9 35 372-406 1-35 (35)
123 COG4783 Putative Zn-dependent 98.0 0.00082 1.8E-08 71.0 21.3 146 472-639 306-455 (484)
124 COG5010 TadD Flp pilus assembl 98.0 0.00033 7.2E-09 68.2 16.8 135 503-639 62-198 (257)
125 PRK10370 formate-dependent nit 98.0 0.00046 1E-08 67.1 17.9 155 448-615 23-184 (198)
126 KOG0624 dsRNA-activated protei 98.0 0.0028 6.1E-08 63.7 22.7 342 253-645 44-401 (504)
127 PRK15179 Vi polysaccharide bio 98.0 0.00039 8.5E-09 80.0 19.5 186 408-613 29-226 (694)
128 PRK14720 transcript cleavage f 98.0 0.00088 1.9E-08 77.9 21.9 83 411-508 121-203 (906)
129 TIGR02552 LcrH_SycD type III s 97.9 0.00012 2.6E-09 66.6 11.9 100 539-638 12-114 (135)
130 PRK15179 Vi polysaccharide bio 97.9 0.00094 2E-08 77.0 21.2 144 436-583 81-230 (694)
131 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 52.3 4.4 34 472-505 1-34 (34)
132 COG5010 TadD Flp pilus assembl 97.9 0.00069 1.5E-08 66.0 16.6 152 445-600 70-227 (257)
133 KOG1914 mRNA cleavage and poly 97.9 0.061 1.3E-06 57.7 31.7 160 473-635 367-536 (656)
134 COG4783 Putative Zn-dependent 97.8 0.0014 3E-08 69.3 18.4 119 516-637 315-436 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00019 4.1E-09 76.5 12.2 121 511-636 173-295 (395)
136 PLN02789 farnesyltranstransfer 97.8 0.0028 6.1E-08 66.3 20.4 181 449-634 45-246 (320)
137 PF13812 PPR_3: Pentatricopept 97.8 2.9E-05 6.3E-10 51.4 3.5 34 371-404 1-34 (34)
138 PRK14720 transcript cleavage f 97.7 0.0019 4.1E-08 75.3 19.7 147 308-483 115-268 (906)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00099 2.1E-08 71.1 15.9 128 441-573 169-298 (395)
140 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 49.2 3.5 31 473-503 1-31 (31)
141 TIGR02552 LcrH_SycD type III s 97.6 0.0013 2.8E-08 59.7 13.4 114 494-611 5-121 (135)
142 PF01535 PPR: PPR repeat; Int 97.6 6E-05 1.3E-09 48.6 3.1 31 372-402 1-31 (31)
143 KOG2053 Mitochondrial inherita 97.6 0.16 3.4E-06 58.0 30.8 66 577-642 438-506 (932)
144 PF04840 Vps16_C: Vps16, C-ter 97.6 0.045 9.7E-07 57.2 25.4 104 448-568 184-287 (319)
145 PLN03088 SGT1, suppressor of 97.6 0.00063 1.4E-08 72.8 12.0 85 553-637 12-98 (356)
146 KOG0553 TPR repeat-containing 97.5 0.00072 1.6E-08 67.1 10.9 72 551-622 123-196 (304)
147 COG3898 Uncharacterized membra 97.5 0.034 7.4E-07 57.2 22.5 206 416-633 164-387 (531)
148 cd00189 TPR Tetratricopeptide 97.5 0.00073 1.6E-08 56.0 9.4 92 546-637 3-96 (100)
149 KOG3081 Vesicle coat complex C 97.5 0.016 3.5E-07 56.7 18.8 134 429-569 96-233 (299)
150 KOG3060 Uncharacterized conser 97.5 0.018 3.8E-07 56.0 18.7 163 445-610 56-226 (289)
151 PF12895 Apc3: Anaphase-promot 97.4 0.00013 2.9E-09 60.0 3.3 78 556-634 2-83 (84)
152 PF09976 TPR_21: Tetratricopep 97.4 0.003 6.5E-08 58.2 12.7 83 550-633 55-142 (145)
153 PF13414 TPR_11: TPR repeat; P 97.4 0.00035 7.6E-09 55.0 5.2 64 574-637 2-66 (69)
154 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0027 5.8E-08 55.9 11.6 67 546-612 42-113 (119)
155 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0018 3.9E-08 57.1 10.4 96 544-639 3-106 (119)
156 PRK10153 DNA-binding transcrip 97.3 0.01 2.2E-07 66.4 17.2 139 468-637 333-481 (517)
157 KOG2041 WD40 repeat protein [G 97.2 0.48 1E-05 52.5 28.3 369 183-604 690-1086(1189)
158 PRK02603 photosystem I assembl 97.2 0.0077 1.7E-07 57.3 13.8 131 471-625 34-167 (172)
159 PF09976 TPR_21: Tetratricopep 97.2 0.014 3.1E-07 53.6 15.0 86 515-601 56-144 (145)
160 KOG0553 TPR repeat-containing 97.2 0.0018 4E-08 64.4 9.2 88 550-637 88-177 (304)
161 KOG3060 Uncharacterized conser 97.2 0.015 3.3E-07 56.4 14.9 180 454-637 25-219 (289)
162 PF13432 TPR_16: Tetratricopep 97.1 0.00073 1.6E-08 52.4 4.9 56 582-637 4-59 (65)
163 PRK02603 photosystem I assembl 97.1 0.0036 7.9E-08 59.5 10.3 82 543-624 35-121 (172)
164 CHL00033 ycf3 photosystem I as 97.1 0.0034 7.3E-08 59.5 10.0 93 542-634 34-138 (168)
165 KOG0550 Molecular chaperone (D 97.1 0.0034 7.5E-08 64.8 10.3 87 551-637 257-349 (486)
166 COG4235 Cytochrome c biogenesi 97.1 0.0024 5.2E-08 64.0 9.0 106 542-647 155-265 (287)
167 PF14559 TPR_19: Tetratricopep 97.1 0.00091 2E-08 52.4 5.0 51 587-637 3-53 (68)
168 KOG3081 Vesicle coat complex C 97.1 0.048 1E-06 53.5 17.3 147 480-636 116-269 (299)
169 PF13431 TPR_17: Tetratricopep 97.1 0.00034 7.3E-09 46.1 1.8 32 598-629 2-33 (34)
170 PRK15331 chaperone protein Sic 97.0 0.0071 1.5E-07 55.3 10.6 87 551-637 45-133 (165)
171 PLN03088 SGT1, suppressor of 97.0 0.0074 1.6E-07 64.7 12.7 80 543-622 36-117 (356)
172 CHL00033 ycf3 photosystem I as 97.0 0.03 6.4E-07 53.0 15.5 109 472-608 35-153 (168)
173 KOG2041 WD40 repeat protein [G 97.0 0.75 1.6E-05 51.1 27.0 58 455-513 1003-1063(1189)
174 PF13432 TPR_16: Tetratricopep 97.0 0.0022 4.9E-08 49.6 6.4 61 549-609 3-65 (65)
175 PF05843 Suf: Suppressor of fo 97.0 0.008 1.7E-07 62.0 12.2 135 341-513 2-146 (280)
176 PF07079 DUF1347: Protein of u 97.0 0.68 1.5E-05 49.1 26.6 74 561-635 442-521 (549)
177 cd00189 TPR Tetratricopeptide 96.9 0.011 2.3E-07 48.8 10.3 96 474-606 2-99 (100)
178 PF13371 TPR_9: Tetratricopept 96.8 0.0028 6.1E-08 50.4 5.6 56 583-638 3-58 (73)
179 KOG2796 Uncharacterized conser 96.8 0.05 1.1E-06 53.0 14.5 182 331-514 127-326 (366)
180 PF14938 SNAP: Soluble NSF att 96.7 0.76 1.6E-05 47.5 24.6 96 475-570 158-264 (282)
181 PF05843 Suf: Suppressor of fo 96.7 0.04 8.6E-07 56.9 14.7 143 474-620 3-151 (280)
182 COG4700 Uncharacterized protei 96.7 0.03 6.5E-07 51.7 11.8 99 538-636 84-187 (251)
183 KOG2280 Vacuolar assembly/sort 96.7 1.7 3.6E-05 49.1 29.8 319 219-567 440-794 (829)
184 PF13414 TPR_11: TPR repeat; P 96.6 0.0048 1E-07 48.4 5.9 65 542-606 2-69 (69)
185 PF14559 TPR_19: Tetratricopep 96.6 0.0024 5.3E-08 49.9 3.9 62 555-616 3-66 (68)
186 PF07079 DUF1347: Protein of u 96.5 1.4 3E-05 46.8 30.4 124 452-580 390-530 (549)
187 PF06239 ECSIT: Evolutionarily 96.5 0.021 4.6E-07 54.5 10.1 98 461-559 34-154 (228)
188 PF10037 MRP-S27: Mitochondria 96.5 0.027 5.9E-07 60.6 12.2 120 401-520 61-186 (429)
189 PRK10153 DNA-binding transcrip 96.5 0.051 1.1E-06 60.9 14.8 49 591-639 400-450 (517)
190 PF13281 DUF4071: Domain of un 96.5 0.25 5.5E-06 52.1 18.9 159 447-608 147-338 (374)
191 PF12895 Apc3: Anaphase-promot 96.5 0.0079 1.7E-07 49.4 6.2 80 485-568 2-83 (84)
192 COG3898 Uncharacterized membra 96.4 0.58 1.3E-05 48.5 20.2 247 374-629 85-349 (531)
193 PF14938 SNAP: Soluble NSF att 96.4 0.39 8.5E-06 49.7 20.0 116 478-608 100-229 (282)
194 KOG2066 Vacuolar assembly/sort 96.4 1.7 3.6E-05 49.3 24.8 72 225-296 365-441 (846)
195 PF12688 TPR_5: Tetratrico pep 96.3 0.075 1.6E-06 46.7 11.9 91 478-568 7-100 (120)
196 PF13428 TPR_14: Tetratricopep 96.3 0.0063 1.4E-07 42.8 4.3 42 576-617 2-43 (44)
197 PRK15363 pathogenicity island 96.3 0.047 1E-06 49.8 10.6 91 446-538 40-134 (157)
198 PF08579 RPM2: Mitochondrial r 96.2 0.052 1.1E-06 46.0 9.7 79 476-555 29-116 (120)
199 COG4700 Uncharacterized protei 96.1 0.57 1.2E-05 43.6 16.5 131 503-636 85-220 (251)
200 PF10037 MRP-S27: Mitochondria 96.1 0.064 1.4E-06 57.8 12.2 120 436-556 61-186 (429)
201 PF12688 TPR_5: Tetratrico pep 96.1 0.048 1E-06 47.9 9.3 84 550-633 8-99 (120)
202 PF06239 ECSIT: Evolutionarily 96.1 0.052 1.1E-06 51.9 10.0 102 418-534 64-166 (228)
203 PRK10866 outer membrane biogen 96.0 0.38 8.3E-06 48.4 17.0 55 583-637 183-240 (243)
204 KOG1538 Uncharacterized conser 96.0 0.36 7.8E-06 53.0 17.2 262 279-602 557-844 (1081)
205 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.02 4.4E-07 61.0 7.7 64 575-638 75-141 (453)
206 PF13371 TPR_9: Tetratricopept 96.0 0.022 4.7E-07 45.1 6.2 65 551-615 3-69 (73)
207 PRK10803 tol-pal system protei 95.9 0.039 8.4E-07 56.0 9.3 95 543-637 143-245 (263)
208 PF04840 Vps16_C: Vps16, C-ter 95.9 2.8 6.1E-05 43.9 26.7 104 254-365 184-287 (319)
209 KOG0543 FKBP-type peptidyl-pro 95.8 0.073 1.6E-06 55.6 10.9 108 551-684 216-340 (397)
210 COG0457 NrfG FOG: TPR repeat [ 95.8 2.1 4.6E-05 41.5 24.6 194 440-637 58-264 (291)
211 PF03704 BTAD: Bacterial trans 95.6 0.11 2.4E-06 47.7 10.2 61 577-637 64-124 (146)
212 COG5107 RNA14 Pre-mRNA 3'-end 95.6 4 8.7E-05 43.4 26.5 87 113-199 30-123 (660)
213 PRK10866 outer membrane biogen 95.5 0.89 1.9E-05 45.7 17.2 53 348-400 40-98 (243)
214 PF08579 RPM2: Mitochondrial r 95.5 0.063 1.4E-06 45.5 7.1 80 374-453 28-116 (120)
215 KOG4555 TPR repeat-containing 95.4 0.099 2.2E-06 45.4 8.4 89 552-640 52-146 (175)
216 KOG2280 Vacuolar assembly/sort 95.4 6.2 0.00013 44.8 24.2 320 281-633 440-794 (829)
217 KOG0550 Molecular chaperone (D 95.4 3.3 7.2E-05 43.6 20.7 163 449-630 257-435 (486)
218 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 1.2 2.6E-05 47.9 18.2 63 438-500 72-140 (453)
219 PRK10803 tol-pal system protei 95.3 0.33 7.1E-06 49.3 13.1 91 520-610 156-252 (263)
220 KOG1258 mRNA processing protei 95.2 6.4 0.00014 43.6 24.0 184 439-625 295-491 (577)
221 PF12921 ATP13: Mitochondrial 95.2 0.18 3.9E-06 44.7 9.7 51 538-588 47-101 (126)
222 KOG2796 Uncharacterized conser 95.1 1.3 2.9E-05 43.5 15.8 187 426-617 125-328 (366)
223 smart00299 CLH Clathrin heavy 95.0 1 2.3E-05 40.8 14.8 120 447-586 13-136 (140)
224 PF09205 DUF1955: Domain of un 95.0 0.79 1.7E-05 40.1 12.3 139 484-641 14-152 (161)
225 PF13424 TPR_12: Tetratricopep 94.9 0.042 9E-07 44.2 4.7 59 545-603 7-74 (78)
226 KOG1538 Uncharacterized conser 94.9 0.44 9.5E-06 52.3 13.3 225 95-368 601-845 (1081)
227 PRK11906 transcriptional regul 94.8 0.76 1.7E-05 49.4 14.7 141 488-632 274-430 (458)
228 KOG1130 Predicted G-alpha GTPa 94.6 0.17 3.7E-06 52.5 9.0 127 408-534 197-342 (639)
229 PF03704 BTAD: Bacterial trans 94.5 0.25 5.5E-06 45.3 9.5 54 445-498 66-122 (146)
230 KOG1130 Predicted G-alpha GTPa 94.5 0.036 7.8E-07 57.3 3.8 46 164-209 27-79 (639)
231 KOG2053 Mitochondrial inherita 94.1 15 0.00032 42.8 38.3 97 135-232 21-126 (932)
232 PF13424 TPR_12: Tetratricopep 94.1 0.057 1.2E-06 43.4 3.6 62 575-636 5-73 (78)
233 PF13512 TPR_18: Tetratricopep 94.0 0.64 1.4E-05 41.8 10.3 67 543-610 11-82 (142)
234 COG0457 NrfG FOG: TPR repeat [ 93.9 6.5 0.00014 37.9 21.7 191 413-607 66-268 (291)
235 PF13525 YfiO: Outer membrane 93.8 2.9 6.2E-05 40.8 15.7 138 478-637 11-169 (203)
236 PF12921 ATP13: Mitochondrial 93.7 0.66 1.4E-05 41.2 9.9 96 441-552 2-97 (126)
237 COG5107 RNA14 Pre-mRNA 3'-end 93.7 11 0.00025 40.2 26.0 131 474-608 399-535 (660)
238 KOG1920 IkappaB kinase complex 93.6 5 0.00011 47.9 19.0 40 261-303 894-933 (1265)
239 PRK09687 putative lyase; Provi 93.6 10 0.00022 39.1 25.2 75 438-518 203-278 (280)
240 PRK11906 transcriptional regul 93.5 0.78 1.7E-05 49.4 11.7 116 522-637 273-400 (458)
241 PF04184 ST7: ST7 protein; In 93.4 1.2 2.5E-05 48.2 12.5 220 484-721 180-412 (539)
242 PF07719 TPR_2: Tetratricopept 93.4 0.2 4.4E-06 32.5 4.7 33 576-608 2-34 (34)
243 PF00515 TPR_1: Tetratricopept 93.3 0.15 3.2E-06 33.2 4.0 33 576-608 2-34 (34)
244 KOG3941 Intermediate in Toll s 93.2 1 2.2E-05 44.7 10.8 109 460-569 53-185 (406)
245 PF08631 SPO22: Meiosis protei 93.0 8.5 0.00018 39.6 18.4 20 583-602 254-273 (278)
246 PF13525 YfiO: Outer membrane 92.9 4.3 9.3E-05 39.6 15.3 161 449-628 13-197 (203)
247 PF04053 Coatomer_WDAD: Coatom 92.9 0.97 2.1E-05 49.6 11.7 106 510-639 298-403 (443)
248 COG4235 Cytochrome c biogenesi 92.2 1.7 3.6E-05 44.1 11.3 30 471-500 155-184 (287)
249 COG4105 ComL DNA uptake lipopr 92.1 9.5 0.00021 37.9 16.1 67 478-544 40-108 (254)
250 smart00299 CLH Clathrin heavy 91.9 5.7 0.00012 35.9 14.0 122 412-553 13-135 (140)
251 PF10300 DUF3808: Protein of u 91.9 2.6 5.7E-05 47.0 13.8 126 410-535 192-333 (468)
252 COG4785 NlpI Lipoprotein NlpI, 91.2 5.5 0.00012 38.2 12.7 180 451-637 75-265 (297)
253 KOG1258 mRNA processing protei 91.1 29 0.00063 38.7 24.7 178 339-518 296-486 (577)
254 COG1729 Uncharacterized protei 91.0 1.9 4.1E-05 43.1 10.1 91 545-638 144-244 (262)
255 PF04184 ST7: ST7 protein; In 90.5 7.2 0.00016 42.4 14.4 100 512-611 264-382 (539)
256 PF00637 Clathrin: Region in C 90.4 0.015 3.3E-07 53.3 -4.8 56 410-465 11-66 (143)
257 KOG1920 IkappaB kinase complex 90.2 51 0.0011 39.9 26.0 151 455-633 894-1050(1265)
258 PF10300 DUF3808: Protein of u 90.0 8.2 0.00018 43.1 15.4 114 520-636 246-374 (468)
259 KOG4234 TPR repeat-containing 89.8 1.4 3E-05 41.6 7.4 89 551-639 103-198 (271)
260 KOG0543 FKBP-type peptidyl-pro 89.8 3.5 7.6E-05 43.5 11.2 93 545-637 259-354 (397)
261 KOG2610 Uncharacterized conser 89.7 3.1 6.8E-05 42.4 10.3 159 484-645 115-283 (491)
262 KOG2066 Vacuolar assembly/sort 89.6 45 0.00097 38.5 24.4 71 132-202 365-440 (846)
263 PF02259 FAT: FAT domain; Int 89.6 31 0.00068 36.6 19.4 145 470-620 144-303 (352)
264 PF13512 TPR_18: Tetratricopep 89.5 4 8.7E-05 36.8 9.9 112 482-609 20-133 (142)
265 COG3118 Thioredoxin domain-con 89.5 6.5 0.00014 39.8 12.4 117 517-636 144-263 (304)
266 KOG4648 Uncharacterized conser 89.4 1.5 3.2E-05 44.8 7.8 95 480-610 105-200 (536)
267 KOG1941 Acetylcholine receptor 89.3 7 0.00015 40.5 12.5 116 515-630 130-267 (518)
268 KOG2114 Vacuolar assembly/sort 89.1 51 0.0011 38.4 25.5 72 479-559 712-787 (933)
269 COG3118 Thioredoxin domain-con 88.9 29 0.00062 35.4 16.3 151 481-635 143-299 (304)
270 PRK09687 putative lyase; Provi 88.9 31 0.00066 35.5 23.5 216 86-305 31-261 (280)
271 PF13181 TPR_8: Tetratricopept 88.8 0.74 1.6E-05 29.8 3.8 33 576-608 2-34 (34)
272 COG3629 DnrI DNA-binding trans 88.4 3 6.5E-05 42.3 9.4 70 441-510 153-230 (280)
273 COG4105 ComL DNA uptake lipopr 88.4 29 0.00062 34.6 17.0 168 452-638 45-233 (254)
274 KOG1585 Protein required for f 88.3 26 0.00057 34.5 15.0 88 544-632 151-250 (308)
275 PRK15331 chaperone protein Sic 88.1 1.6 3.6E-05 40.2 6.7 79 288-366 47-131 (165)
276 PF13281 DUF4071: Domain of un 87.8 23 0.00051 37.7 15.9 62 349-410 150-221 (374)
277 COG3947 Response regulator con 87.8 26 0.00056 35.5 15.0 96 542-637 226-341 (361)
278 KOG2114 Vacuolar assembly/sort 87.4 64 0.0014 37.6 28.5 74 550-624 712-786 (933)
279 PF13428 TPR_14: Tetratricopep 87.3 1.7 3.7E-05 30.3 5.1 33 474-508 3-35 (44)
280 PF04053 Coatomer_WDAD: Coatom 87.0 5.7 0.00012 43.7 11.4 69 450-529 327-395 (443)
281 PF07035 Mic1: Colon cancer-as 86.9 27 0.00058 32.6 15.6 54 545-599 91-144 (167)
282 PF13170 DUF4003: Protein of u 86.7 11 0.00024 39.0 12.7 92 457-551 119-225 (297)
283 COG1729 Uncharacterized protei 86.4 6.5 0.00014 39.4 10.2 92 475-569 145-241 (262)
284 PF00515 TPR_1: Tetratricopept 86.2 1.5 3.3E-05 28.3 4.1 32 473-506 2-33 (34)
285 KOG2396 HAT (Half-A-TPR) repea 86.2 57 0.0012 35.7 22.0 60 122-181 104-167 (568)
286 PF09613 HrpB1_HrpK: Bacterial 85.7 22 0.00047 32.8 12.5 87 518-607 21-109 (160)
287 KOG4555 TPR repeat-containing 85.6 5.1 0.00011 35.2 7.8 53 481-535 52-105 (175)
288 KOG3941 Intermediate in Toll s 85.5 2.4 5.3E-05 42.2 6.7 98 359-456 53-173 (406)
289 KOG1498 26S proteasome regulat 85.4 34 0.00074 36.1 15.0 110 548-661 136-264 (439)
290 PF10602 RPN7: 26S proteasome 85.4 7.6 0.00017 36.8 10.0 59 442-500 37-101 (177)
291 PF13176 TPR_7: Tetratricopept 85.2 1.5 3.2E-05 29.0 3.7 26 578-603 2-27 (36)
292 PF02259 FAT: FAT domain; Int 85.1 25 0.00054 37.4 15.3 66 573-638 144-213 (352)
293 PF09613 HrpB1_HrpK: Bacterial 84.7 2.7 5.8E-05 38.6 6.2 52 587-638 22-73 (160)
294 PRK13800 putative oxidoreducta 84.1 1.1E+02 0.0025 37.4 23.3 55 299-353 625-679 (897)
295 PF13176 TPR_7: Tetratricopept 83.7 2.4 5.1E-05 28.0 4.2 26 474-499 1-26 (36)
296 KOG1585 Protein required for f 83.2 28 0.00061 34.3 12.5 45 342-398 93-137 (308)
297 TIGR02561 HrpB1_HrpK type III 83.0 3.4 7.4E-05 37.3 5.9 52 588-639 23-74 (153)
298 PF04097 Nic96: Nup93/Nic96; 82.6 1E+02 0.0022 35.8 21.9 80 285-367 265-354 (613)
299 KOG4279 Serine/threonine prote 82.5 18 0.00039 41.1 12.3 183 375-608 205-399 (1226)
300 PRK12798 chemotaxis protein; R 82.2 77 0.0017 34.1 21.7 166 454-622 125-303 (421)
301 KOG0292 Vesicle coat complex C 82.0 2.6 5.7E-05 48.3 5.9 123 485-642 606-728 (1202)
302 KOG4648 Uncharacterized conser 81.4 4.2 9E-05 41.6 6.6 87 551-637 105-193 (536)
303 PRK10941 hypothetical protein; 81.2 7.8 0.00017 39.4 8.7 61 577-637 183-243 (269)
304 PF14853 Fis1_TPR_C: Fis1 C-te 81.0 3 6.5E-05 30.5 4.1 34 581-614 7-40 (53)
305 PF07719 TPR_2: Tetratricopept 80.1 3.7 7.9E-05 26.3 4.1 31 474-506 3-33 (34)
306 COG3629 DnrI DNA-binding trans 80.1 6 0.00013 40.2 7.3 59 579-637 157-215 (280)
307 TIGR02508 type_III_yscG type I 79.0 24 0.00052 29.5 8.9 62 448-512 46-107 (115)
308 KOG2610 Uncharacterized conser 79.0 31 0.00066 35.6 11.6 108 166-273 115-235 (491)
309 PRK11619 lytic murein transgly 78.5 1.4E+02 0.0031 34.8 30.6 126 486-618 255-385 (644)
310 PF13170 DUF4003: Protein of u 78.5 58 0.0013 33.8 14.2 55 488-542 78-138 (297)
311 COG4649 Uncharacterized protei 78.1 28 0.0006 32.5 10.0 51 351-401 69-124 (221)
312 KOG0686 COP9 signalosome, subu 77.2 1.1E+02 0.0023 32.8 15.2 160 443-637 152-332 (466)
313 KOG1941 Acetylcholine receptor 76.5 82 0.0018 33.0 13.9 127 477-603 127-274 (518)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 76.0 17 0.00036 30.2 7.3 63 487-551 22-84 (103)
315 PF10602 RPN7: 26S proteasome 75.3 31 0.00067 32.7 10.4 95 473-569 37-139 (177)
316 KOG4570 Uncharacterized conser 74.5 20 0.00043 36.6 8.9 97 435-535 58-163 (418)
317 PRK09169 hypothetical protein; 74.4 3E+02 0.0065 36.6 39.0 512 92-603 122-778 (2316)
318 KOG1464 COP9 signalosome, subu 74.0 80 0.0017 31.6 12.7 239 354-604 41-328 (440)
319 PF02284 COX5A: Cytochrome c o 73.6 19 0.0004 30.3 7.1 55 561-615 31-85 (108)
320 smart00028 TPR Tetratricopepti 73.5 6.2 0.00013 23.9 3.8 31 577-607 3-33 (34)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 73.0 18 0.0004 30.0 6.8 54 561-614 28-81 (103)
322 KOG0403 Neoplastic transformat 72.7 1.5E+02 0.0032 32.2 16.6 58 445-502 513-573 (645)
323 PF13181 TPR_8: Tetratricopept 72.2 5.8 0.00012 25.4 3.3 27 474-500 3-29 (34)
324 TIGR02270 conserved hypothetic 71.9 1.6E+02 0.0034 32.2 21.1 27 443-469 254-280 (410)
325 PF02284 COX5A: Cytochrome c o 71.6 23 0.0005 29.7 7.2 60 490-551 28-87 (108)
326 PF13374 TPR_10: Tetratricopep 70.8 9.2 0.0002 25.7 4.3 28 473-500 3-30 (42)
327 PF07721 TPR_4: Tetratricopept 70.8 4.3 9.4E-05 24.5 2.2 24 610-633 2-25 (26)
328 KOG0890 Protein kinase of the 70.7 3.6E+02 0.0079 35.9 23.7 306 314-638 1388-1731(2382)
329 PRK13800 putative oxidoreducta 70.5 2.6E+02 0.0057 34.2 23.6 121 244-364 753-876 (897)
330 PF00637 Clathrin: Region in C 70.3 20 0.00043 32.4 7.7 121 70-200 16-140 (143)
331 KOG3364 Membrane protein invol 70.3 32 0.00069 30.7 8.1 25 584-608 80-104 (149)
332 KOG1308 Hsp70-interacting prot 69.4 2.6 5.6E-05 43.3 1.6 90 556-645 127-218 (377)
333 KOG0276 Vesicle coat complex C 68.4 36 0.00079 38.0 9.9 45 453-499 649-693 (794)
334 PF06552 TOM20_plant: Plant sp 67.3 13 0.00028 34.9 5.6 46 591-636 51-100 (186)
335 TIGR02270 conserved hypothetic 67.2 2E+02 0.0043 31.5 22.3 186 144-334 90-277 (410)
336 KOG1550 Extracellular protein 67.2 1.6E+02 0.0034 33.8 15.6 51 589-641 378-429 (552)
337 PF13174 TPR_6: Tetratricopept 66.6 11 0.00024 23.6 3.8 27 581-607 6-32 (33)
338 KOG0276 Vesicle coat complex C 66.3 54 0.0012 36.7 10.7 148 453-633 598-745 (794)
339 KOG0376 Serine-threonine phosp 66.2 9.7 0.00021 41.2 5.1 85 552-636 13-99 (476)
340 PF13431 TPR_17: Tetratricopep 65.9 5.5 0.00012 25.9 2.1 24 337-360 10-33 (34)
341 PF11207 DUF2989: Protein of u 65.8 25 0.00053 33.8 7.2 76 553-629 117-198 (203)
342 PF04910 Tcf25: Transcriptiona 65.7 1.7E+02 0.0036 31.4 14.5 64 574-637 99-167 (360)
343 KOG1464 COP9 signalosome, subu 65.6 64 0.0014 32.3 10.1 159 259-417 39-237 (440)
344 PF09205 DUF1955: Domain of un 65.4 1E+02 0.0022 27.5 12.6 60 476-536 90-149 (161)
345 PF15161 Neuropep_like: Neurop 64.9 2.3 4.9E-05 30.6 0.1 17 733-750 11-27 (65)
346 PF06552 TOM20_plant: Plant sp 64.6 33 0.00073 32.2 7.6 44 591-641 96-139 (186)
347 PF10345 Cohesin_load: Cohesin 64.5 2.8E+02 0.006 32.3 27.7 58 579-636 538-604 (608)
348 PF13929 mRNA_stabil: mRNA sta 64.1 69 0.0015 32.7 10.4 73 527-599 186-262 (292)
349 TIGR02561 HrpB1_HrpK type III 64.1 1.1E+02 0.0025 27.8 10.6 65 520-587 23-89 (153)
350 PRK09169 hypothetical protein; 63.5 4.9E+02 0.011 34.8 40.2 477 123-599 122-732 (2316)
351 PF14853 Fis1_TPR_C: Fis1 C-te 63.4 29 0.00062 25.4 5.6 49 612-686 4-52 (53)
352 KOG1586 Protein required for f 62.5 1.7E+02 0.0036 29.0 15.0 97 522-618 129-240 (288)
353 PF07035 Mic1: Colon cancer-as 62.1 1.4E+02 0.003 28.0 12.3 123 84-208 21-143 (167)
354 PF13374 TPR_10: Tetratricopep 62.0 16 0.00035 24.4 4.1 23 612-634 5-27 (42)
355 PF15469 Sec5: Exocyst complex 62.0 1.2E+02 0.0026 28.7 11.6 118 475-614 60-178 (182)
356 PF09477 Type_III_YscG: Bacter 62.0 96 0.0021 26.4 9.0 86 421-510 21-106 (116)
357 PF13934 ELYS: Nuclear pore co 61.9 1.3E+02 0.0029 29.7 12.1 106 475-589 79-186 (226)
358 PF07721 TPR_4: Tetratricopept 61.6 15 0.00032 22.1 3.3 21 445-465 5-25 (26)
359 COG4455 ImpE Protein of avirul 60.7 1.7E+02 0.0037 28.6 11.9 126 475-609 4-139 (273)
360 PF08631 SPO22: Meiosis protei 60.2 2.1E+02 0.0045 29.4 21.4 61 474-536 86-150 (278)
361 KOG4642 Chaperone-dependent E3 60.0 72 0.0016 31.5 9.2 80 558-637 25-106 (284)
362 PRK11509 hydrogenase-1 operon 59.7 22 0.00047 31.8 5.4 72 648-736 30-102 (132)
363 COG4785 NlpI Lipoprotein NlpI, 59.6 1.8E+02 0.0039 28.4 13.0 78 323-400 79-162 (297)
364 PRK15180 Vi polysaccharide bio 59.5 63 0.0014 35.0 9.5 118 485-607 302-423 (831)
365 COG4455 ImpE Protein of avirul 58.8 25 0.00054 34.1 5.8 63 548-610 6-70 (273)
366 PF11768 DUF3312: Protein of u 58.6 94 0.002 34.7 11.0 56 445-500 412-472 (545)
367 COG1747 Uncharacterized N-term 58.4 3E+02 0.0064 30.6 17.5 87 445-534 70-158 (711)
368 TIGR02508 type_III_yscG type I 57.4 1.2E+02 0.0025 25.6 8.9 47 256-304 48-94 (115)
369 COG4649 Uncharacterized protei 55.9 1.8E+02 0.0039 27.3 15.9 121 482-603 68-195 (221)
370 PF14427 Pput2613-deam: Pput_2 54.2 31 0.00067 29.1 4.9 59 704-762 44-102 (118)
371 smart00028 TPR Tetratricopepti 54.0 24 0.00052 21.0 3.7 27 474-500 3-29 (34)
372 PF07575 Nucleopor_Nup85: Nup8 54.0 3E+02 0.0065 31.7 15.0 163 473-655 373-539 (566)
373 PF14669 Asp_Glu_race_2: Putat 53.9 2.1E+02 0.0045 27.4 13.7 94 364-467 100-207 (233)
374 PF11207 DUF2989: Protein of u 53.5 92 0.002 30.0 8.7 73 489-562 123-197 (203)
375 PF07720 TPR_3: Tetratricopept 52.2 34 0.00074 22.7 4.1 32 577-608 3-36 (36)
376 COG2909 MalT ATP-dependent tra 51.8 4.9E+02 0.011 31.1 17.9 184 453-640 427-649 (894)
377 PRK15180 Vi polysaccharide bio 51.8 92 0.002 33.8 9.2 140 519-663 301-443 (831)
378 KOG4570 Uncharacterized conser 51.3 80 0.0017 32.5 8.3 96 82-181 54-162 (418)
379 KOG4507 Uncharacterized conser 51.2 40 0.00086 37.5 6.6 72 548-619 647-720 (886)
380 COG2976 Uncharacterized protei 50.7 70 0.0015 30.6 7.3 82 317-401 97-189 (207)
381 KOG1586 Protein required for f 50.0 2.7E+02 0.0059 27.6 13.4 23 586-608 165-187 (288)
382 PF13174 TPR_6: Tetratricopept 49.9 22 0.00048 22.2 3.0 23 478-500 6-28 (33)
383 PF13934 ELYS: Nuclear pore co 48.9 2.3E+02 0.005 28.0 11.3 115 453-577 90-206 (226)
384 PF11838 ERAP1_C: ERAP1-like C 48.7 3.3E+02 0.0072 28.3 17.0 164 456-619 55-246 (324)
385 cd08819 CARD_MDA5_2 Caspase ac 48.6 54 0.0012 26.8 5.4 38 259-297 48-85 (88)
386 KOG3364 Membrane protein invol 48.6 1.3E+02 0.0028 27.0 8.1 64 504-569 29-97 (149)
387 PRK11619 lytic murein transgly 48.1 5.1E+02 0.011 30.3 36.8 72 130-202 106-180 (644)
388 PF13762 MNE1: Mitochondrial s 47.4 2.2E+02 0.0048 25.9 10.9 76 445-520 43-128 (145)
389 PF09670 Cas_Cas02710: CRISPR- 47.1 2.9E+02 0.0063 29.8 12.7 121 483-604 142-270 (379)
390 PF00244 14-3-3: 14-3-3 protei 46.9 1.5E+02 0.0032 29.6 9.7 50 591-640 142-200 (236)
391 smart00386 HAT HAT (Half-A-TPR 46.6 31 0.00068 21.3 3.3 29 589-617 1-29 (33)
392 PF14561 TPR_20: Tetratricopep 46.4 29 0.00064 28.6 3.8 41 596-636 9-49 (90)
393 PF10366 Vps39_1: Vacuolar sor 46.0 1.4E+02 0.0031 25.6 8.1 27 474-500 41-67 (108)
394 PF11838 ERAP1_C: ERAP1-like C 45.8 3.7E+02 0.008 28.0 17.2 80 422-501 146-230 (324)
395 PF13762 MNE1: Mitochondrial s 43.4 1.8E+02 0.0038 26.5 8.6 80 474-556 41-128 (145)
396 cd08819 CARD_MDA5_2 Caspase ac 43.2 1.1E+02 0.0024 25.1 6.4 29 199-228 50-78 (88)
397 KOG0545 Aryl-hydrocarbon recep 42.9 2.5E+02 0.0055 28.0 9.9 88 550-637 185-292 (329)
398 PF07163 Pex26: Pex26 protein; 42.2 2.1E+02 0.0047 29.1 9.6 88 479-569 90-184 (309)
399 COG1488 PncB Nicotinic acid ph 42.1 29 0.00062 37.7 4.0 87 671-761 274-365 (405)
400 PF09986 DUF2225: Uncharacteri 41.8 1E+02 0.0022 30.3 7.4 63 575-637 118-193 (214)
401 PF04097 Nic96: Nup93/Nic96; 41.0 4.1E+02 0.0089 30.9 13.4 28 508-535 325-355 (613)
402 KOG2063 Vacuolar assembly/sort 40.9 4.3E+02 0.0094 31.8 13.4 24 546-569 507-530 (877)
403 COG2909 MalT ATP-dependent tra 40.8 7.1E+02 0.015 29.8 23.0 42 169-213 195-238 (894)
404 KOG3807 Predicted membrane pro 39.5 3.5E+02 0.0077 28.1 10.7 23 593-615 380-402 (556)
405 KOG2063 Vacuolar assembly/sort 38.9 7.9E+02 0.017 29.8 23.1 27 373-399 506-532 (877)
406 KOG4234 TPR repeat-containing 38.7 60 0.0013 31.1 4.9 29 188-216 137-165 (271)
407 KOG2396 HAT (Half-A-TPR) repea 38.7 5.9E+02 0.013 28.3 26.1 103 503-608 455-564 (568)
408 PF14561 TPR_20: Tetratricopep 38.1 2.3E+02 0.0049 23.3 7.9 62 574-635 21-85 (90)
409 PF14863 Alkyl_sulf_dimr: Alky 38.0 91 0.002 28.3 5.9 71 559-632 57-127 (141)
410 PF06957 COPI_C: Coatomer (COP 38.0 1E+02 0.0022 33.6 7.2 41 568-608 291-333 (422)
411 KOG3824 Huntingtin interacting 38.0 41 0.00088 34.3 4.0 61 554-614 127-189 (472)
412 KOG2034 Vacuolar sorting prote 37.6 7.9E+02 0.017 29.4 20.9 50 343-397 507-556 (911)
413 KOG0991 Replication factor C, 37.3 4.3E+02 0.0093 26.3 10.5 48 460-508 227-274 (333)
414 COG4976 Predicted methyltransf 37.2 48 0.001 32.5 4.1 57 552-608 4-62 (287)
415 KOG0292 Vesicle coat complex C 36.8 3.5E+02 0.0077 32.1 11.3 130 449-603 651-781 (1202)
416 PRK10941 hypothetical protein; 36.5 2.1E+02 0.0046 29.2 9.0 68 547-614 185-254 (269)
417 PF11846 DUF3366: Domain of un 36.3 1.2E+02 0.0025 29.1 7.0 36 571-606 140-175 (193)
418 KOG4077 Cytochrome c oxidase, 36.0 2E+02 0.0042 25.5 7.1 60 490-551 67-126 (149)
419 KOG3507 DNA-directed RNA polym 35.3 14 0.0003 27.1 0.2 11 735-745 20-30 (62)
420 COG2178 Predicted RNA-binding 34.8 3.3E+02 0.0072 26.1 9.1 52 450-501 38-98 (204)
421 TIGR03504 FimV_Cterm FimV C-te 34.4 46 0.001 23.2 2.7 26 613-638 3-28 (44)
422 PF11663 Toxin_YhaV: Toxin wit 33.4 45 0.00098 29.6 3.1 33 483-517 106-138 (140)
423 KOG3824 Huntingtin interacting 33.3 56 0.0012 33.3 4.1 54 518-574 127-182 (472)
424 TIGR03504 FimV_Cterm FimV C-te 32.7 89 0.0019 21.8 3.9 22 479-500 6-27 (44)
425 cd00280 TRFH Telomeric Repeat 32.4 1.7E+02 0.0038 27.7 6.8 36 580-616 116-151 (200)
426 PF11846 DUF3366: Domain of un 32.3 1.3E+02 0.0027 28.9 6.5 32 538-569 139-170 (193)
427 PF08225 Antimicrobial19: Pseu 32.3 22 0.00047 20.0 0.6 10 740-749 11-20 (23)
428 PF07575 Nucleopor_Nup85: Nup8 32.2 5.6E+02 0.012 29.5 12.7 57 408-466 407-463 (566)
429 PRK13342 recombination factor 32.2 7E+02 0.015 27.2 13.8 48 474-521 229-279 (413)
430 PF13971 Mei4: Meiosis-specifi 32.1 23 0.0005 37.4 1.3 24 707-730 16-40 (375)
431 KOG2659 LisH motif-containing 32.0 2.8E+02 0.006 27.3 8.5 93 474-569 28-129 (228)
432 KOG1550 Extracellular protein 32.0 8.2E+02 0.018 28.0 19.6 45 590-637 490-537 (552)
433 PF12862 Apc5: Anaphase-promot 31.7 1E+02 0.0022 25.5 5.0 51 586-636 9-68 (94)
434 COG4890 Predicted outer membra 31.7 23 0.0005 22.7 0.8 10 713-722 11-20 (37)
435 KOG4077 Cytochrome c oxidase, 31.7 1.9E+02 0.0042 25.5 6.4 47 561-607 70-116 (149)
436 cd02965 HyaE HyaE family; HyaE 31.5 80 0.0017 27.3 4.3 72 647-736 22-94 (111)
437 PRK10564 maltose regulon perip 31.4 81 0.0018 32.4 5.0 41 474-514 259-299 (303)
438 PF10366 Vps39_1: Vacuolar sor 31.3 1.9E+02 0.0042 24.8 6.6 27 373-399 41-67 (108)
439 PF10579 Rapsyn_N: Rapsyn N-te 30.7 1.1E+02 0.0023 24.6 4.4 46 520-565 19-65 (80)
440 KOG2581 26S proteasome regulat 30.7 4.6E+02 0.01 28.3 10.2 157 428-618 196-359 (493)
441 PF08967 DUF1884: Domain of un 30.5 56 0.0012 26.1 2.8 27 668-694 7-33 (85)
442 KOG4642 Chaperone-dependent E3 30.4 5.6E+02 0.012 25.6 10.4 76 455-532 24-103 (284)
443 TIGR02414 pepN_proteo aminopep 30.4 1.1E+03 0.023 28.9 14.8 149 476-630 676-835 (863)
444 PRK14015 pepN aminopeptidase N 30.4 1.1E+03 0.023 28.9 14.9 117 511-630 718-845 (875)
445 PF01147 Crust_neurohorm: Crus 30.3 10 0.00023 29.6 -1.1 14 733-746 18-31 (73)
446 PF10345 Cohesin_load: Cohesin 30.2 9.2E+02 0.02 28.0 25.1 179 215-399 29-253 (608)
447 PF11525 CopK: Copper resistan 29.1 22 0.00048 27.1 0.4 20 754-773 8-27 (73)
448 PF14689 SPOB_a: Sensor_kinase 28.7 98 0.0021 23.4 3.9 23 477-499 28-50 (62)
449 PF05119 Terminase_4: Phage te 28.7 1E+02 0.0022 25.7 4.5 35 662-696 57-91 (100)
450 TIGR00686 phnA alkylphosphonat 28.0 25 0.00054 29.7 0.6 31 733-763 17-48 (109)
451 COG3947 Response regulator con 27.9 1.2E+02 0.0025 31.1 5.2 49 314-362 284-335 (361)
452 PF07163 Pex26: Pex26 protein; 27.9 3.6E+02 0.0078 27.5 8.5 53 443-495 120-181 (309)
453 smart00638 LPD_N Lipoprotein N 27.8 9.7E+02 0.021 27.5 20.2 23 342-364 342-364 (574)
454 cd08326 CARD_CASP9 Caspase act 27.5 1.1E+02 0.0024 24.9 4.2 50 246-295 29-78 (84)
455 PF10255 Paf67: RNA polymerase 26.6 1.7E+02 0.0036 31.8 6.6 29 370-398 163-191 (404)
456 COG4472 Uncharacterized protei 26.5 1.2E+02 0.0027 23.9 4.0 37 653-692 5-41 (88)
457 COG2976 Uncharacterized protei 26.4 6E+02 0.013 24.5 18.0 114 490-608 70-192 (207)
458 cd08323 CARD_APAF1 Caspase act 26.2 3.3E+02 0.0072 22.2 6.8 31 200-230 43-73 (86)
459 PF04090 RNA_pol_I_TF: RNA pol 25.8 6.1E+02 0.013 24.5 9.6 110 509-619 43-188 (199)
460 KOG2758 Translation initiation 25.4 7.9E+02 0.017 25.6 13.4 164 427-604 21-196 (432)
461 COG1747 Uncharacterized N-term 25.2 1E+03 0.022 26.7 20.3 160 405-569 65-231 (711)
462 PF10255 Paf67: RNA polymerase 25.1 1.9E+02 0.0041 31.4 6.7 29 277-305 163-191 (404)
463 COG5431 Uncharacterized metal- 25.1 21 0.00045 29.7 -0.3 12 766-777 46-57 (117)
464 PF14689 SPOB_a: Sensor_kinase 25.0 1.2E+02 0.0025 23.0 3.7 30 506-535 22-51 (62)
465 KOG4279 Serine/threonine prote 24.7 2.3E+02 0.0049 32.9 7.2 26 738-763 491-516 (1226)
466 PF14376 Haem_bd: Haem-binding 24.4 27 0.00059 31.5 0.2 9 736-744 42-50 (137)
467 KOG4521 Nuclear pore complex, 24.2 1.3E+03 0.028 28.8 13.3 21 448-468 927-947 (1480)
468 TIGR02710 CRISPR-associated pr 23.7 7.1E+02 0.015 26.8 10.5 125 512-637 135-274 (380)
469 PF11848 DUF3368: Domain of un 23.6 2.7E+02 0.0058 19.7 5.2 32 483-514 13-44 (48)
470 cd08326 CARD_CASP9 Caspase act 23.5 1.7E+02 0.0038 23.7 4.7 32 137-168 44-75 (84)
471 KOG4567 GTPase-activating prot 23.4 8.1E+02 0.018 25.5 10.1 73 492-570 263-345 (370)
472 COG2912 Uncharacterized conser 23.3 4E+02 0.0086 27.1 8.1 58 579-636 185-242 (269)
473 TIGR01503 MthylAspMut_E methyl 23.1 5.9E+02 0.013 28.1 9.7 126 420-549 68-217 (480)
474 PHA02875 ankyrin repeat protei 22.7 9.9E+02 0.021 25.8 16.7 239 66-304 4-264 (413)
475 KOG4507 Uncharacterized conser 22.2 2.6E+02 0.0055 31.6 6.9 53 448-500 649-704 (886)
476 KOG0551 Hsp90 co-chaperone CNS 22.0 3.9E+02 0.0085 28.0 7.7 92 543-634 81-178 (390)
477 PF10579 Rapsyn_N: Rapsyn N-te 21.8 2.4E+02 0.0053 22.6 4.9 46 484-529 18-65 (80)
478 PF12862 Apc5: Anaphase-promot 21.7 2.8E+02 0.0062 22.8 5.9 25 581-605 47-71 (94)
479 PF04910 Tcf25: Transcriptiona 21.4 1E+03 0.022 25.5 15.5 88 515-606 111-224 (360)
480 PF11768 DUF3312: Protein of u 21.2 5.9E+02 0.013 28.7 9.5 56 344-399 412-472 (545)
481 PRK07914 hypothetical protein; 21.1 8.8E+02 0.019 25.3 10.9 84 420-506 129-229 (320)
482 COG3058 FdhE Uncharacterized p 20.9 42 0.0009 33.6 0.7 19 736-754 253-271 (308)
483 PF12968 DUF3856: Domain of Un 20.8 5.4E+02 0.012 22.6 7.1 78 560-637 33-128 (144)
484 COG3043 NapB Nitrate reductase 20.8 70 0.0015 28.7 2.0 43 681-753 60-102 (155)
485 PHA02537 M terminase endonucle 20.7 5.7E+02 0.012 25.4 8.5 36 471-507 83-119 (230)
486 PF08311 Mad3_BUB1_I: Mad3/BUB 20.4 3.8E+02 0.0083 23.6 6.7 74 559-634 49-124 (126)
487 PF04123 DUF373: Domain of unk 20.3 4.1E+02 0.0088 28.2 7.8 84 592-703 28-113 (344)
488 PF10925 DUF2680: Protein of u 20.2 1.2E+02 0.0026 22.8 2.9 29 661-689 31-59 (59)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.3e-149 Score=1332.74 Aligned_cols=682 Identities=38% Similarity=0.667 Sum_probs=644.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC---------------------
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--------------------- 150 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------------------- 150 (778)
..++|+||.+|+++|+++.|+++|++|++||.++||+||.+|++.|++++|+++|++|.
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 34456666666666666666666666666666666666666666666666666666653
Q ss_pred ------------------CCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004024 151 ------------------KRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKA 212 (778)
Q Consensus 151 ------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (778)
.||+++||+||.+|+++|++++|.++|++|..||.++||+||.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 25667778899999999999999999999999999999999999999999999999999986
Q ss_pred c----CCccHhhHHHHHHHhcCChhHHHHHHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHH
Q 004024 213 N----WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAM 284 (778)
Q Consensus 213 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~l 284 (778)
+ +|.+||++++.+|++.|+++.|.+++..|. .||+.+||+||.+|+++|++++|.++|++|..||+++||+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 5 467899999999999999999999999886 68999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCCh
Q 004024 285 VSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~ 356 (778)
|.+|++.|++++|+++|++|.+ ||..||++++.+|++.|++++|.++|+.+. .++..++|+||++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999953 699999999999999999999999999998 78899999999999999999
Q ss_pred hHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 357 THARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 357 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.|+++|..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999985 699999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
+.+|..++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
|++.|++++|+++|+.|.+++|+.|+..||+||+++|+|+|++++|++++++||++||..+|++|+++|+.|||.+.|+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLE 676 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 676 (778)
+++++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||+.++||.+|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcCeEE
Q 004024 677 ELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLI 756 (778)
Q Consensus 677 ~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 756 (778)
+|..+|++.||+||++.++ |++||+||+.|++||||||||||||+||||+||||+||||||+|||+++||||||+||||
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 9999999999999999998 558899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccCCcccCCCC
Q 004024 757 ILRDNNRFHHFSGGSCSCGD 776 (778)
Q Consensus 757 ~~rd~~rfh~f~~g~csc~d 776 (778)
||||++|||||+||+|||||
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-134 Score=1178.44 Aligned_cols=600 Identities=34% Similarity=0.635 Sum_probs=576.7
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHhcc-----cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHH
Q 004024 152 RDVVSWNTMLSGYAQNGYADAARRIFDRML-----EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGF 226 (778)
Q Consensus 152 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 226 (778)
++.++|+++|.+|.+.|++++|+++|+.|. .||..||++++.+|++.++++.|.++|..|.+.|+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------- 154 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------- 154 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------
Confidence 344555666666666666666666666654 46888999999999999999999999999888776
Q ss_pred HhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCC
Q 004024 227 VKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE 306 (778)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 306 (778)
.||+.+||+|+.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+
T Consensus 155 -----------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 155 -----------------EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred -----------------CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999964
Q ss_pred ----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHH
Q 004024 307 ----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAII 378 (778)
Q Consensus 307 ----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li 378 (778)
+|..||+.++.+|+..|..+.|.++|..+. .+|..++|+||++|+++|++++|.++|++|+++|+++||+||
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 589999999999999999999999999988 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 004024 379 AGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVE 458 (778)
Q Consensus 379 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 458 (778)
.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+||++|+|+|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 459 EAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 459 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
+|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|
T Consensus 378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
+.|+..||++|+++|+|+|++++|.+++++||++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCcccccc
Q 004024 619 YAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDV 698 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~ 698 (778)
|++.|+|++|.++++.|+++|++|.||+||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.+++||+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~ 617 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDV 617 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcCeEEEEecCCcccccCCcccCCCCCC
Q 004024 699 GEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778 (778)
Q Consensus 699 ~~~~k~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 778 (778)
+||+||+.|++||||||||||||+||||+||||+||||||+|||+++|||||++||||||||++|||||+||+|||||||
T Consensus 618 ~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 618 DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-77 Score=714.61 Aligned_cols=584 Identities=26% Similarity=0.401 Sum_probs=503.0
Q ss_pred HHhHHHHHHhhcCCchhhhHhhhhCCC----CChhhHHHHHHHHHhCCCchHHHHHHhhCC----CCCcchHHHHHHHHH
Q 004024 63 QWNVAITTHMRNGCCDSALHVFNSMPR----RSSVSYNAMISGYLLNGQLDPARQVFDQMP----QRDLVSWNVMISGYV 134 (778)
Q Consensus 63 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~ 134 (778)
.++.++..+++.|++++|+.+|+.|.. ++..+|+.++..|.+.+.++.|.++++.+. .++...+|+||.+|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 355666667777777777766666543 566667777777777777777777766543 456666777777777
Q ss_pred cCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc----cCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 135 RNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML----EKNEISWNGLLAAYVQNGRIEEACMLFES 210 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~t~~~ll~~~~~~g~~~~a~~~~~~ 210 (778)
+.|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|. .||.+||++++++|+..+++..+.++|..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 77777777777777777777777777777777777777777777774 56777777777777777777777777766
Q ss_pred cccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHh
Q 004024 211 KANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQ 290 (778)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 290 (778)
+++.+. .+|+.++|+||.+|+++|++++|.++|++|+.+|+++||+||.+|++
T Consensus 213 ~~~~g~---------------------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~ 265 (857)
T PLN03077 213 VVRFGF---------------------------ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE 265 (857)
T ss_pred HHHcCC---------------------------CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh
Confidence 666554 57999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 291 NGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
.|++++|+++|++|.+ ||..||++++.+|++.|+++.|.++|..+. .+|+.+||+||++|+++|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999964 699999999999999999999999999998 78999999999999999999999999
Q ss_pred hhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchh
Q 004024 363 FDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCF 442 (778)
Q Consensus 363 f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 442 (778)
|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..
T Consensus 346 f~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred HhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
+++|.+++..|.+. |+.|+..++++|+++|+++|++++|.++|++| +||..+|++|+.+|..+|+.++|.++++++.
T Consensus 505 l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 505 LMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999876 99999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred hc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHH-hCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 004024 603 EM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMR-DRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELE 679 (778)
Q Consensus 603 ~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~-~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~ 679 (778)
+. .|+ ..+|..+...|++.|++++|.++++.|+ +.|+.+... |.....|.. .-...+++..
T Consensus 582 ~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~----------~y~~lv~~l-----~r~G~~~eA~ 645 (857)
T PLN03077 582 ESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK----------HYACVVDLL-----GRAGKLTEAY 645 (857)
T ss_pred HcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH----------HHHHHHHHH-----HhCCCHHHHH
Confidence 85 465 4889999999999999999999999998 677755321 100000000 0001356666
Q ss_pred HHHHhCCcccCCCc
Q 004024 680 FKLKQDGFVYSTKL 693 (778)
Q Consensus 680 ~~~~~~gy~p~~~~ 693 (778)
+.+++++..||...
T Consensus 646 ~~~~~m~~~pd~~~ 659 (857)
T PLN03077 646 NFINKMPITPDPAV 659 (857)
T ss_pred HHHHHCCCCCCHHH
Confidence 77777888898753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-65 Score=599.21 Aligned_cols=541 Identities=17% Similarity=0.236 Sum_probs=444.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcc-----hHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHH
Q 004024 121 RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVV-----SWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAY 195 (778)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~ 195 (778)
++...|..+++.|++.|++++|+++|++|++++.+ +++.++.+|++.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566667777777777777777777777654443 3444555666777777777777777667777777777777
Q ss_pred HhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-
Q 004024 196 VQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP- 274 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~- 274 (778)
++.|++++|.++|+.|.+.++ .||..+||+||.+|+++|++++|.++|++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl---------------------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGL---------------------------KADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 777777777777766665554 5788888888888888888888888888887
Q ss_pred ---CCCeehHHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc------ccccc
Q 004024 275 ---VKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT------CKNVA 341 (778)
Q Consensus 275 ---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~------~~~~~ 341 (778)
.||.++||+||.+|++.|++++|+++|++|.. ||..||+.+|.+|++.|++++|.++|++|. .||..
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 46888888888888888888888888888853 588888888888888888888888888885 57899
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
+|++||++|+++|++++|.++|++|.+ ++.++||++|.+|++.|++++|+++|++|.+.|+.||.+||++++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999976 4568999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV----DKDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.|++++|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|++
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999994 5999999999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh----hcC------------
Q 004024 494 LFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG----RAG------------ 557 (778)
Q Consensus 494 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~----r~g------------ 557 (778)
+|++|.+.|+.||.+||+.++.+|++.|++++|.++|..|.+. |+.||..+|++|++++. +++
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999876 99999999999998743 332
Q ss_pred -------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHhhhcCCc-
Q 004024 558 -------RLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFE-MEPENAGMYVLLSNLYAASGRW- 625 (778)
Q Consensus 558 -------~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~y~~L~~~y~~~g~~- 625 (778)
..++|..+|++| ++.||..+|+++++++...+..+.+..+++.+.. -.+.+..+|..|.+.+ |++
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~ 896 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYD 896 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccCh
Confidence 346899999999 7899999999999777778888888777776542 2355668899998877 444
Q ss_pred chHHHHHHHHHhCCCccCCce-eEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCccccc
Q 004024 626 GDVSKVRLKMRDRGVKKVTGY-SWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHD 697 (778)
Q Consensus 626 ~~a~~~~~~m~~~g~~k~~g~-s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~ 697 (778)
++|..+++.|.+.|+.+.... .| .+.=.+|.|-.|- -.--+...|..+...+...-..|.....+|+
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 589999999999999764431 11 2222445553332 1123456677777776554478888777777
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-64 Score=593.37 Aligned_cols=499 Identities=16% Similarity=0.244 Sum_probs=452.7
Q ss_pred HHhHHHHHHhhcCCchhhhHhhhhCCCCC-----hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCC
Q 004024 63 QWNVAITTHMRNGCCDSALHVFNSMPRRS-----SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNK 137 (778)
Q Consensus 63 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 137 (778)
.+...+..+++.|++++|+++|+.|..++ ..+++.++..|.+.|.+++|..+|+.|+.||.++||.||.+|++.|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCc
Confidence 34566677889999999999999998754 4466778889999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhCC----CCCcchHHHHHHHHHcCCChHHHHHHHHhcc----cCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004024 138 SLSAARNLFEMMP----KRDVVSWNTMLSGYAQNGYADAARRIFDRML----EKNEISWNGLLAAYVQNGRIEEACMLFE 209 (778)
Q Consensus 138 ~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (778)
++++|+++|+.|. .||+++||+||.+|++.|++++|.++|++|. .||.+||++||.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999996 5899999999999999999999999999998 6899999999999999999999999999
Q ss_pred hccc----CCccHhhHHHHHHHhcCChhHHHHHHhhCC------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----
Q 004024 210 SKAN----WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---- 275 (778)
Q Consensus 210 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---- 275 (778)
.|.+ +|.++|+.||.+|++.|++++|.++|++|. .||.++|++||.+|+++|++++|.++|++|.+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9965 567899999999999999999999999994 68999999999999999999999999999975
Q ss_pred CCeehHHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHH
Q 004024 276 KDVFTWTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMI 347 (778)
Q Consensus 276 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li 347 (778)
++..+||++|.+|++.|++++|+++|++|.+ ||..||++++++|++.|++++|.++|+.|. .+|..+|++||
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4679999999999999999999999999975 599999999999999999999999999998 78999999999
Q ss_pred HHHHhcCChhHHHHHhhhCC----CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHH
Q 004024 348 TGYAQSGEITHARNLFDRMP----QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLE 423 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 423 (778)
++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|...|+.||..||++++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999995 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHH----HHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVM----YCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.|.++|..|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+ ++|+.+|++|+
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~ 839 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETI 839 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHH
Confidence 999999999999999999999999987 45566666665666555445555565 45999999999
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAA 576 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~ 576 (778)
+.|+.||.+||+.+|.++...+.++.+..+++.|... +..|+..+|+++++++++. .++|..++++| ++.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999997777778888887777777544 6777889999999998543 47899999998 6777754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-64 Score=587.83 Aligned_cols=449 Identities=21% Similarity=0.344 Sum_probs=391.0
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHhhCC-----CCCcchHHHHHHHHHcCCChhHHHHHHhhCC----CCCcchHHHH
Q 004024 90 RSSVSYNAMISGYLLNGQLDPARQVFDQMP-----QRDLVSWNVMISGYVRNKSLSAARNLFEMMP----KRDVVSWNTM 160 (778)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~~~l 160 (778)
.+..+|+.+|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .||+++||+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455567777777777777777777777664 3566777777777777777777777777664 4677777777
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC----CccHhhHHHHHHHhcCChhHHH
Q 004024 161 LSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANW----EVVSWNSLMGGFVKQKRLGDAK 236 (778)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 236 (778)
+++|++.|++++|.++|++|..||.++|++++.+|++.|++++|.++|++|.+. +..+|+.++.++++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 777777777777777777777777777777777777777777777777777543 4457777777777777777777
Q ss_pred HHHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 004024 237 WIFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP----EKN 308 (778)
Q Consensus 237 ~~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~ 308 (778)
+++..+. .+|..+||+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|++|. .||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 7766654 67999999999999999999999999999999999999999999999999999999999995 469
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 309 TVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 309 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
..||++++.+|++.|++++|+++|..|. .+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK-VGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|+++|++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 69999999999999999999999999999
Q ss_pred HHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 464 FEEIV-DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 464 f~~m~-~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.++..|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99996 48999999999999999999999999999975 6775 468999999999999999999999999876 7653
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=3.7e-42 Score=297.88 Aligned_cols=106 Identities=63% Similarity=1.030 Sum_probs=100.2
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCccccccchhhH--------hhhhhhhhHHHHH
Q 004024 645 GYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEK--------EHMLRYHSEKLAV 716 (778)
Q Consensus 645 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k--------~~~l~~hse~la~ 716 (778)
||||+++ |.|++||.+||+. ++..++...||.|++..++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999988 566678889999999999999998877 6799999999999
Q ss_pred HHhhhCCCCCCcEEEEecc-cccCccchhhHHhhhhcCeEEEEecCCcccccC
Q 004024 717 AYGILSIPAGRPIRVMKNL-RVCEDCHNAIKHISKIVGRLIILRDNNRFHHFS 768 (778)
Q Consensus 717 ~~gl~~~~~~~~i~i~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 768 (778)
|||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-33 Score=339.10 Aligned_cols=564 Identities=13% Similarity=0.082 Sum_probs=405.4
Q ss_pred HHhhcCCchhhhHhhhhCCCCCh---hhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHH
Q 004024 70 THMRNGCCDSALHVFNSMPRRSS---VSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
.+...|++++|+..|+.....++ ..+..+...+...|++++|...|+.+. ..+...+..+...+.+.|++++|.
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 34567888888877776654322 233444556777788888888887765 234556677777788888888888
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC--
Q 004024 144 NLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE-- 215 (778)
Q Consensus 144 ~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 215 (778)
..+..+.. .+...++.+...|.+.|++++|.++|+++. +.+...+..+...+...|+.++|.+.+..+.+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 88877653 345677778888888888888888888776 2345566777777778888888888887776543
Q ss_pred -ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHH
Q 004024 216 -VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGY 288 (778)
Q Consensus 216 -~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 288 (778)
......++..|.+.|++++|.++++.+. +.+..+|+.+...|...|++++|...|+++.. .+...+..+...+
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 2355667777788888888888887775 44666778888888888888888888877642 2445667777777
Q ss_pred HhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 289 VQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 289 ~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
...|++++|.+.|+++... +..++..+...+...|+.++|...+..+. +.+...+..++..|.+.|++++|..+
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777542 56677777777777888888888887776 45556677777888888888888888
Q ss_pred hhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC
Q 004024 363 FDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA 439 (778)
Q Consensus 363 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 439 (778)
++++.+ .+...|..+...|.+.|++++|+..|+++.... +.+...+..+...+...|+.++|..++..+.+.. +.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 877653 344667777788888888888888888776543 2233445566666777788888888887777653 44
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++.. ..|+..++..+..+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRA 745 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHH
Confidence 566777777888888888888888877754 3556677777777788888888888888777 44665667777777
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
+.+.|+.++|.+.++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... +++.++..+...+...|+ +.|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 77788888888777777653 2345667777777777788888888777776 223 346677777777777777 667
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
...+++++++.|+++..+..++.+|...|++++|.++++.+.+.+.
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777777776554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.5e-33 Score=336.47 Aligned_cols=564 Identities=13% Similarity=0.057 Sum_probs=341.1
Q ss_pred HHHHHhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CC-cchHHHHHHHHHcCCChh
Q 004024 67 AITTHMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RD-LVSWNVMISGYVRNKSLS 140 (778)
Q Consensus 67 ~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~ 140 (778)
....+...|++++|...++.... .+...+......+...|++++|...|+.+.. |+ ...+..+...+...|+++
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 34455566666666655554432 1222222333344456666667666666542 22 223333444556666777
Q ss_pred HHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 004024 141 AARNLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANW 214 (778)
Q Consensus 141 ~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (778)
+|...|++..+ .+...+..+...+.+.|++++|...+..+. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 313 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77666665542 234455566666666777777776666665 224455666666666667777777666665543
Q ss_pred C---ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHH
Q 004024 215 E---VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMV 285 (778)
Q Consensus 215 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 285 (778)
+ ...+..+...+...|++++|.+.|+.+. +.+...+..++..|.+.|++++|..+++++.. .+..+|+.+.
T Consensus 393 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 472 (899)
T TIGR02917 393 DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLG 472 (899)
T ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2 3345566666666677776666666554 22334455566666666777777666666542 2445666666
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 286 SGYVQNGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 286 ~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
..|...|++++|...|+++.+ | +...+..+...+...|++++|.+.+..+. +.+..++..+...|.+.|+.++|
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 666667777777776666543 2 44455566666666677777776666665 44555666666666667777777
Q ss_pred HHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 360 RNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 360 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...+...|++++|...+..+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766666543 233455566666666677777777776665432 3344455566666666677777776666666543
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGI 513 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 513 (778)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+.+ .++...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 33455566666666667777777776666543 245566666666666777777777776666643 2344455556
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCh
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKT 591 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~ 591 (778)
...+...|++++|.+.|..+.. ..|+...+..+..++.+.|++++|.+.++++ ... .+..++..+...|...|+.
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 6666666777777776666653 2344455666666666677777776666655 222 2355666666666666777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.|...++++++..|+++..+..++++|...|+ ++|.++++.+.+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 777777777776667666666666777776666 666666665544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2e-22 Score=247.62 Aligned_cols=407 Identities=11% Similarity=0.058 Sum_probs=312.2
Q ss_pred HHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCe---ehHHHH----------
Q 004024 223 MGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDV---FTWTAM---------- 284 (778)
Q Consensus 223 i~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~---~~~~~l---------- 284 (778)
...+...|++++|...|++.. +.|...+..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 455677899999999998875 44777888899999999999999999987654 221 123222
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCCh
Q 004024 285 --VSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 285 --i~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~ 356 (778)
...+.+.|++++|+..|++.... +...+..+...+...|++++|.+.++.+. +.+...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 34567889999999999888753 56677788888999999999999999888 445556777777775 4578
Q ss_pred hHHHHHhhhCCCCC------------eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccchHHHhcccccHH
Q 004024 357 THARNLFDRMPQHD------------CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTSVLSTCANLASLE 423 (778)
Q Consensus 357 ~~A~~~f~~m~~~d------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~ 423 (778)
++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+.. .+..+...+...|+.+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 88988888775421 123445667788899999999999999874 46543 4455667788999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----Chh---------HHHHHHHHHHHcCChHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK----DVI---------SWNTMIAGYARHGFGKD 490 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d~~---------~~~~li~~~~~~g~~~~ 490 (778)
+|...++.+++.. +.+.....++...+.+.|+.++|...++.+... +.. .+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999988754 345555555666778899999999999988642 111 12345667888999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 491 ALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
|+++++. ..++...+..+...+...|+.++|...|+...+. .| +...+..++.+|...|++++|++.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999872 2334456677788899999999999999998763 45 5778889999999999999999999987
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHhhhcCCcchHHHHHHHH-HhCCC
Q 004024 570 P-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG------MYVLLSNLYAASGRWGDVSKVRLKM-RDRGV 640 (778)
Q Consensus 570 ~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~y~~L~~~y~~~g~~~~a~~~~~~m-~~~g~ 640 (778)
+ ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|.+.++.. ...|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 4 4554 567788888889999999999999999998876553 5667799999999999999986665 44455
Q ss_pred c
Q 004024 641 K 641 (778)
Q Consensus 641 ~ 641 (778)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=7e-22 Score=242.86 Aligned_cols=564 Identities=11% Similarity=0.061 Sum_probs=418.3
Q ss_pred HHHHhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CCcch-----------------
Q 004024 68 ITTHMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RDLVS----------------- 125 (778)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~----------------- 125 (778)
.......++.+.|.+.+.+... .|+.++..++..+.+.|+.++|.+.+++..+ |+...
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhh
Confidence 3445677889988877776543 4677888899999999999999999999863 33321
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhCCCCCc--chHH--HHHHHHHcCCChHHHHHHHHhcc--cC-CcchHHHHHHHHHhc
Q 004024 126 WNVMISGYVRNKSLSAARNLFEMMPKRDV--VSWN--TMLSGYAQNGYADAARRIFDRML--EK-NEISWNGLLAAYVQN 198 (778)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~f~~m~~~d~--~~~~--~li~~~~~~g~~~~A~~~~~~m~--~~-d~~t~~~ll~~~~~~ 198 (778)
.-.+...+.+.|++++|.+.|+...+.++ .... .........|+.++|+..|+++. .| +...+..+...+...
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 13334568899999999999999874322 2111 11122234699999999999998 24 456788888999999
Q ss_pred CCHHHHHHHHHhcccCCccH-----------------------hhHHHHHHHhcCChhHHHHHHhhCC--CCChh-HHHH
Q 004024 199 GRIEEACMLFESKANWEVVS-----------------------WNSLMGGFVKQKRLGDAKWIFDRMP--VRDEV-SWNT 252 (778)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~~-----------------------~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~-~~~~ 252 (778)
|+.++|++.++++.+..... +...+..+-.....+.|...+..+. ..|+. ....
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 99999999999886543211 1111111112223444555554432 11221 1224
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--Cc---chH------------
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPV--K-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NT---VSW------------ 312 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~---~t~------------ 312 (778)
+...+...|++++|...|++... | |...+..|...|.+.|++++|+..|++..+. +. ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45677889999999999998764 3 6678999999999999999999999998753 21 111
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCC
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGY 386 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~ 386 (778)
......+.+.|++++|...+.++. +.+...+..|...|.+.|++++|++.|++..+. +...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 122456778999999999999998 556677888999999999999999999998753 3345666666664 467
Q ss_pred hhHHHHHHHHHhhcCccc--------CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 004024 387 SEDSLRLFIEMKRYGERL--------NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVE 458 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 458 (778)
.++|+.+++.+....... ....+......+...|++++|.+.+..+++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999988764331110 01123334455677899999999999998865 446778888999999999999
Q ss_pred HHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------HHHHHHHHHhccCcHHHH
Q 004024 459 EAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI---------TMVGILSACSHTGLVEKG 526 (778)
Q Consensus 459 ~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~---------t~~~ll~a~~~~g~~~~a 526 (778)
+|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999998854 3 55566666666778999999999998865432222221 133456678899999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
..+++. ..++...+..+.+.+.+.|++++|++.+++. ...|+ +..+..+...+...|+.+.|+..++++.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999872 2345667788999999999999999999887 45564 678999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.|+++..+..++.+|...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999887643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.8e-20 Score=217.54 Aligned_cols=550 Identities=12% Similarity=0.042 Sum_probs=357.9
Q ss_pred HhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhHHHHH
Q 004024 71 HMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RDLVSWNVMISGYVRNKSLSAARNL 145 (778)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 145 (778)
+...|++++|+..|+.... .+..++..|...|.+.|+.++|+..+++... |+-..+..++..+ +++++|..+
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 3455999999988887654 3467889999999999999999999999874 4333333333333 899999999
Q ss_pred HhhCCC--C-CcchHHHHHHH--------HHcCCChHHHHHHHHhcccCC--cchHHHH-HHHHHhcCCHHHHHHHHHhc
Q 004024 146 FEMMPK--R-DVVSWNTMLSG--------YAQNGYADAARRIFDRMLEKN--EISWNGL-LAAYVQNGRIEEACMLFESK 211 (778)
Q Consensus 146 f~~m~~--~-d~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~d--~~t~~~l-l~~~~~~g~~~~a~~~~~~~ 211 (778)
|+++.. | +..++..+... |.+.+...+++. .+...|+ ..+.... ...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999863 3 33444444444 888877777777 4444443 4444444 88999999999999999999
Q ss_pred ccCCcc---HhhHHHHHHHh-cCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC-----CCeehH-
Q 004024 212 ANWEVV---SWNSLMGGFVK-QKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV-----KDVFTW- 281 (778)
Q Consensus 212 ~~~~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d~~~~- 281 (778)
.+.++. -...|...|.. .++ +.+..++......|+..+.+++..|.+.|+.++|.+++++++. |+..+|
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 987543 35567778887 477 8888888765567899999999999999999999999998763 211222
Q ss_pred -----------------------------HHHHHHHHhcCChHHHHHHHHhCCC--------------------------
Q 004024 282 -----------------------------TAMVSGYVQNGKVDEARMIFDAMPE-------------------------- 306 (778)
Q Consensus 282 -----------------------------~~li~~~~~~g~~~~A~~l~~~m~~-------------------------- 306 (778)
-.++..+.+.++++-+.++...-..
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1224556666777666555321110
Q ss_pred -----C-CcchHHHHHHHHhccCChHHHHHHHHhhcc--c----cccHHHHHHHHHHhcCChhHHHHHh-----------
Q 004024 307 -----K-NTVSWNAMIAGYVQTKRMDMARELFEAMTC--K----NVASWNTMITGYAQSGEITHARNLF----------- 363 (778)
Q Consensus 307 -----~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~----~~~~~~~Li~~y~k~g~~~~A~~~f----------- 363 (778)
| +.....-+.-...+.|+.++|.+++....+ . +....+-|+..|.+.+.+....++.
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0 111111111223455677777777777662 1 2224446677777766522222221
Q ss_pred ----h-------------hCCC---C--CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 364 ----D-------------RMPQ---H--DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 364 ----~-------------~m~~---~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
. .... . +...|..+...+.. +++++|+..|.+.... .|+......+..++...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCC
Confidence 1 1110 1 23345555555555 6777777766666543 3554433333334456777
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMI---AGYARHGFGKDALMLFESM 498 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~Al~l~~~m 498 (778)
+++|...+..+... +|+......+...+.+.|++++|...|++..+.++..++... ......|++++|+..|++.
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777776443 233334455566677777887777777776553333333222 2233347788888887777
Q ss_pred HHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 004024 499 KTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-A 575 (778)
Q Consensus 499 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~ 575 (778)
.+ +.|+...+..+..++.+.|+.++|...|..... +.| +...+..+...+...|++++|++.+++. ...|+ +
T Consensus 603 L~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 603 LN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 76 567766777777777777888888877777664 344 4556666777777778888887777765 34453 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..|..+..++...|+++.|+..++++++++|+++......+++.....+++.+.+-+++.-
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777777888888888888888888777777777777777777777776555443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.5e-18 Score=204.24 Aligned_cols=522 Identities=11% Similarity=0.041 Sum_probs=371.4
Q ss_pred HhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHhhCCC--CCcchHHHHHHHHHcCCChHHHHHHH
Q 004024 103 LLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFEMMPK--RDVVSWNTMLSGYAQNGYADAARRIF 177 (778)
Q Consensus 103 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~ 177 (778)
...|++++|+..|++.. +.+..++..|...|.+.|++++|+..+++..+ |+-..+..++..+ ++.++|..++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 34499999999999886 23567889999999999999999999998864 3323333333323 9999999999
Q ss_pred Hhcc--cC-CcchHHHHHHH--------HHhcCCHHHHHHHHHhcccCC--cc-HhhHHHHHHHhcCChhHHHHHHhhCC
Q 004024 178 DRML--EK-NEISWNGLLAA--------YVQNGRIEEACMLFESKANWE--VV-SWNSLMGGFVKQKRLGDAKWIFDRMP 243 (778)
Q Consensus 178 ~~m~--~~-d~~t~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (778)
+++. .| +..++..+... |.+.+...++++ .+...++ .. ..-.+...|.+.|++++|.+++.++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9998 44 34455555554 777766666666 3333333 33 34445899999999999999999987
Q ss_pred C---CChhHHHHHHHHHhcC-CCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCC-----CCcch---
Q 004024 244 V---RDEVSWNTMITGYAQN-NYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE-----KNTVS--- 311 (778)
Q Consensus 244 ~---~d~~~~~~li~~y~~~-g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~t--- 311 (778)
+ .+..-...|...|.+. ++ +++..+++...+.|...+..+...|.+.|+.++|..+++++.. |...+
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 3 3444566777788883 77 9999998865566888999999999999999999999999863 11111
Q ss_pred ---------------------------HHHHHHHHhccCChHHHHHHHHhhc----------------------------
Q 004024 312 ---------------------------WNAMIAGYVQTKRMDMARELFEAMT---------------------------- 336 (778)
Q Consensus 312 ---------------------------~~~ll~~~~~~~~~~~a~~i~~~~~---------------------------- 336 (778)
...++..+.+.+.++.+.++...-.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 1122445555666665555532111
Q ss_pred ----cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCe----eehhhHHHHHHhcCC---hhHHHHHHH--------
Q 004024 337 ----CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDC----ISWAAIIAGYAQSGY---SEDSLRLFI-------- 395 (778)
Q Consensus 337 ----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~~~g~---~~~Al~l~~-------- 395 (778)
+.+....--+.-...+.|+.++|.++|..... ++. ..-+-++..|..++. ..+++.+-+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 01122222223334567888888888887754 222 123356667777666 444444411
Q ss_pred ----HH----------hh-cCcccC--cc-cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 396 ----EM----------KR-YGERLN--RS-PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 396 ----~m----------~~-~g~~pd--~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
+. .. .+..|+ .. .+..+ ..|...+..++|...+....... |+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L-G~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL-AKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH-HHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 11 11 012233 22 22222 33333478888888777666543 4444444445556789999
Q ss_pred HHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHch
Q 004024 458 EEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 458 ~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
++|...|+++.. ++...|..+...+.+.|+.++|...|++..+. .|+... +..+.......|+.++|...++...
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998754 45566777888899999999999999999884 465543 3334445566799999999999887
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.+.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.+.|+..++++++++|+++..+
T Consensus 604 ---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 604 ---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred ---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45678889999999999999999999999887 56676 56788888899999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..++.+|...|+.++|...++...+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998877653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-19 Score=187.00 Aligned_cols=343 Identities=14% Similarity=0.160 Sum_probs=221.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCe--ehHH-HHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHh
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAPVKDV--FTWT-AMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYV 320 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~--~~~~-~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~ 320 (778)
+..|.-+..+|...|+.+.|...|.+..+-|+ +... -+....-..|+.++|...|.+..+. -.+.|+.|...+-
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 34455555555555555555555544443222 2111 1222222345555555555444332 2344555555555
Q ss_pred ccCChHHHHHHHHhhcccc---ccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHH
Q 004024 321 QTKRMDMARELFEAMTCKN---VASWNTMITGYAQSGEITHARNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLF 394 (778)
Q Consensus 321 ~~~~~~~a~~i~~~~~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~ 394 (778)
..|++..|.+-|++++..| ...|-.|.+.|...+.++.|...+.+... | ..+.+..|...|-.+|..+-|+..|
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 5555555555555555211 23344444455555555555444443321 1 2233444444444444444444444
Q ss_pred HHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C
Q 004024 395 IEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-D 471 (778)
Q Consensus 395 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d 471 (778)
++.. ... +.-...|+.|.+++-..|++.+|.+.+.+... | -
T Consensus 310 kral-----------------------------------~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 310 KRAL-----------------------------------ELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHH-----------------------------------hcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 4443 322 22345667777777777888888888777654 2 3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCM 549 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 549 (778)
..+.+.|...|...|..++|..+|....+ +.|.- ..++.+...+-+.|++++|+..+++.. .|.|+ .+.|+.|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~Nm 428 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhc
Confidence 45677788888888888888888888777 77764 467788888888888888888888775 67786 6789999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
...|-..|+.+.|.+.+.+. .+.|. +...+.|.+.++..||+.+|+..++.+++++|+.+.+|-.|.-...--.+|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999998876 67787 56889999999999999999999999999999999999998888877788887
Q ss_pred HHH
Q 004024 628 VSK 630 (778)
Q Consensus 628 a~~ 630 (778)
-.+
T Consensus 509 ~d~ 511 (966)
T KOG4626|consen 509 YDK 511 (966)
T ss_pred hHH
Confidence 433
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=5.7e-18 Score=185.53 Aligned_cols=263 Identities=14% Similarity=0.122 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCC-------eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHD-------CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|++++|+.+|.++.+..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------------- 137 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG------------- 137 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-------------
Confidence 34444444444555555555444443211 1234455555566666666666666555421
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC--------hhHHHHHHHHHHHcC
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD--------VISWNTMIAGYARHG 486 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--------~~~~~~li~~~~~~g 486 (778)
+.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+...|
T Consensus 138 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 138 -----------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred -----------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 2334455566666666666666666666664321 113445666667777
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~ 563 (778)
+.++|+..|+++.+ ..|+. ..+..+...+...|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.
T Consensus 195 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 195 DLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776 34543 35556666777777777777777777643 233 355677888888888888888
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh---cCCcchHHHHHHHHHhCC
Q 004024 564 NLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA---SGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 564 ~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~---~g~~~~a~~~~~~m~~~g 639 (778)
+.++++ ...|+...+..+...+...|+.+.|...++++++..|++.. +..+...+.. .|+.+++..+++.|.+++
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 888876 45677666778888888999999999999999999998854 4444444432 568999999999999999
Q ss_pred CccCCce
Q 004024 640 VKKVTGY 646 (778)
Q Consensus 640 ~~k~~g~ 646 (778)
+++.|..
T Consensus 349 ~~~~p~~ 355 (389)
T PRK11788 349 LKRKPRY 355 (389)
T ss_pred HhCCCCE
Confidence 9988883
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=7e-18 Score=176.06 Aligned_cols=408 Identities=13% Similarity=0.150 Sum_probs=307.2
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCC---hhHHHHHHHHHhcCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChH
Q 004024 222 LMGGFVKQKRLGDAKWIFDRMPVRD---EVSWNTMITGYAQNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVD 295 (778)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~ 295 (778)
|..-..+.|++++|++--...-..| ....-.+-.++.+..+++....--....+. -..+|..+...+-..|+++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 3334445566666665444332111 111122234455555555433322222222 2356777888888888888
Q ss_pred HHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhccccc---cHHHHHHHHHHhcCChhHHHHHhhhCCC-
Q 004024 296 EARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNV---ASWNTMITGYAQSGEITHARNLFDRMPQ- 368 (778)
Q Consensus 296 ~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 368 (778)
+|+.+++.|.+. ....|..+..++...|+.+.|.+.|.+.+.-|+ -+.+-+.+.....|++++|...+-+..+
T Consensus 134 ~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 134 DALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 888888888753 667888888888888888888888888873332 3344456666778888888888877654
Q ss_pred -CC-eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHH
Q 004024 369 -HD-CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGN 445 (778)
Q Consensus 369 -~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 445 (778)
|. .+.|+.|...+-.+|+..+|+..|.+... +.|+- ..|..+-..+...+.++.|...+..+.... +....++.
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~g 290 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHG 290 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhcc
Confidence 33 37899999999999999999999998875 44542 234444445555555666665555554432 33456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccC
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTG 521 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g 521 (778)
.|.-.|-..|.+|-|+..+++..+ |+ ...||.|..++-..|+..+|.+.+.+... +.|+. ...+.+..++...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhc
Confidence 677788899999999999999866 43 56899999999999999999999999988 78875 47889999999999
Q ss_pred cHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
.+++|..+|.... .+.|. ....+.|..+|-..|++++|..-+++. .++|+ +..++.+...+...|+++.|...+
T Consensus 369 ~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 369 KIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 9999999998875 45564 566888999999999999999999887 78998 569999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 599 EVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+++..+|.-+.++..|+.+|-.+|+..+|..-++...+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999988776654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=7.5e-17 Score=186.48 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=191.0
Q ss_pred CChhHHHHHHHHHhhcC-cccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYG-ERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g-~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
+++++|++.|++....+ ..|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777777777776654 22332 233444444556777777777777776653 3345577778888999999999999
Q ss_pred HHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 463 AFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 463 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
.|++..+ .+...|..+...|...|++++|+..|++..+ +.|+. ..+..+..++...|+.++|...|+...+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 9998754 3577899999999999999999999999988 66764 45667777888999999999999998753
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 539 VIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDA-------A-TWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 539 ~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.| +...|..+..+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|+..++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34 4678889999999999999999999885 344431 1 12222223344699999999999999999999
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..|+.+|...|++++|.+.++...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 98999999999999999999999888765
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2.3e-18 Score=188.61 Aligned_cols=268 Identities=12% Similarity=0.142 Sum_probs=146.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCC-------eehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHH
Q 004024 249 SWNTMITGYAQNNYLAEAQRLFEEAPVKD-------VFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAG 318 (778)
Q Consensus 249 ~~~~li~~y~~~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~ 318 (778)
++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|++++|+.+|+++.+. +..++..++..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 150 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44444444455555555555544443211 123444445555555555555555555431 33444455555
Q ss_pred HhccCChHHHHHHHHhhcc--cc------ccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCCh
Q 004024 319 YVQTKRMDMARELFEAMTC--KN------VASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYS 387 (778)
Q Consensus 319 ~~~~~~~~~a~~i~~~~~~--~~------~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~ 387 (778)
+...|++++|.+.+..+.. ++ ...+..+...|.+.|++++|.+.|+++.+. +...|..+...|.+.|++
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH
Confidence 5555555555555554441 11 112345556666777777777777765432 233556666677777777
Q ss_pred hHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 388 EDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
++|+++|+++...+......++..+..++...|++++|...+..+.+.. |+..++..++..|.+.|++++|.++|+++
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777777777654321112334445555555555555555555554442 33344466677777777777777777665
Q ss_pred cC--CChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHH
Q 004024 468 VD--KDVISWNTMIAGYAR---HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVE 524 (778)
Q Consensus 468 ~~--~d~~~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 524 (778)
.+ |+..+++.++..+.. +|+.++++.+|++|.+.+++|++. .+|++.|.+.
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA 364 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence 43 666666666665553 456677777777777666666655 3366665543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=2.9e-16 Score=184.95 Aligned_cols=376 Identities=9% Similarity=0.027 Sum_probs=219.4
Q ss_pred cCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChHHHHHHHH
Q 004024 229 QKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP---VKDVFTWTAMVSGYVQNGKVDEARMIFD 302 (778)
Q Consensus 229 ~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 302 (778)
.|+.++|++++.... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444332 1233345666666666666666666666632 2234445566666666666666666666
Q ss_pred hCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee----
Q 004024 303 AMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI---- 372 (778)
Q Consensus 303 ~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---- 372 (778)
+... | +.. +..+..++...|+.++|...++.+. +.+..++..+...+.+.|..+.|.+.++.... ++.
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~ 185 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD 185 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH
Confidence 6543 2 334 5566666666677777777766666 44445555666667777777777777776654 111
Q ss_pred ----ehhhHHHHH-----HhcCCh---hHHHHHHHHHhhc-CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC
Q 004024 373 ----SWAAIIAGY-----AQSGYS---EDSLRLFIEMKRY-GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA 439 (778)
Q Consensus 373 ----~~~~li~~~-----~~~g~~---~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 439 (778)
....++..+ ...++. ++|++.++.+... ...|+... ..
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~--------------------------- 236 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DY--------------------------- 236 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HH---------------------------
Confidence 000111111 111122 4455555555432 11121110 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VI-SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-----ITM 510 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-----~t~ 510 (778)
.......+.++...|++++|+..|+++.+.+ +. .--.+...|...|++++|+..|+++.+. .|.. ...
T Consensus 237 -~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~ 313 (765)
T PRK10049 237 -QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEEL 313 (765)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHH
Confidence 0000000112234466666666666665421 11 1111345666667777777776666542 2221 234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYG----------VIPN---SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-A 575 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~ 575 (778)
..+..++...|+.++|.++++.+..... -.|+ ...+..+..++...|++++|++.++++ ...|+ .
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4445556666777777776666654311 1233 234556778888899999999999887 33453 6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|..+...+...|+.+.|+..++++++++|+++..+..++..+...|+|++|.++++.+.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 688888899999999999999999999999999999999999999999999999988887764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=1.6e-15 Score=175.47 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=143.9
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHH
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDAL 492 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al 492 (778)
+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 333444444444444443332 33556677788888888888888888888754 3 4566777888888889999999
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--------HHHHHHHHHHhhcCCHHHHH
Q 004024 493 MLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--------KHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 493 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|++..+ ..|+ ...+..+..++...|++++|.+.|+.... +.|+. ..++.....+...|++++|.
T Consensus 454 ~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 454 ATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 99988877 4565 45677777888888999999988888764 23321 11222223344569999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 564 NLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 564 ~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++. ...|+ ...|..|...+...|+++.|...++++.++.+.....+ .+..|-++.++....++
T Consensus 529 ~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 999885 55665 45788999999999999999999999999987653322 22345566666555544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.1e-15 Score=176.40 Aligned_cols=345 Identities=12% Similarity=0.061 Sum_probs=263.8
Q ss_pred hcCCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVK------DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMA 328 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a 328 (778)
.+..+++.-.-+|..-+++ +..-...++..+.+.|++++|+.+++..... +...+..++.++...|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3556666666666665532 2333455677788889999999888887642 555666667777788999999
Q ss_pred HHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCc
Q 004024 329 RELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE 402 (778)
Q Consensus 329 ~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 402 (778)
...++.+. +.+...+..+...|.+.|++++|...|++..+ | +...|..+...+.+.|+.++|...++++....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 99998888 55667788888889999999999999988764 3 44578888888999999999999998876643
Q ss_pred ccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHH
Q 004024 403 RLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMI 479 (778)
Q Consensus 403 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li 479 (778)
|+.......+..+...|++++|...+..+.+..-.++......+...|.+.|+.++|...|++... .+...+..+.
T Consensus 175 -P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 -PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 333332222334677889999988888877664334444555567788899999999999998865 3567888899
Q ss_pred HHHHHcCChHH----HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHH
Q 004024 480 AGYARHGFGKD----ALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLL 553 (778)
Q Consensus 480 ~~~~~~g~~~~----Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l 553 (778)
..|.+.|++++ |+..|++..+ +.|+. ..+..+...+...|+.++|...++..... .|+ ...+..+..+|
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 99999999885 8999999988 67765 46778888999999999999999988753 453 55667788999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPDAATW-GALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.+.|++++|.+.++++ ...|+...| ..+..++...|+.+.|...++++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999887 356765444 3456678889999999999999999999864
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.1e-14 Score=160.73 Aligned_cols=487 Identities=12% Similarity=0.120 Sum_probs=265.1
Q ss_pred hcCCchhhhHhhhhCCC------CChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHH---c---CCChh
Q 004024 73 RNGCCDSALHVFNSMPR------RSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYV---R---NKSLS 140 (778)
Q Consensus 73 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~---~g~~~ 140 (778)
..+++..|+.+|...+. +|+.+ .+-..+.++|+.+.|+..|.+..+-|+..-++++.... . ...+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 44556666666655322 22221 12233456667777777776665433333333332211 1 11233
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHcCCChHHHHHHHHhcccCC------cchHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 141 AARNLFEMMP---KRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKN------EISWNGLLAAYVQNGRIEEACMLFESK 211 (778)
Q Consensus 141 ~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d------~~t~~~ll~~~~~~g~~~~a~~~~~~~ 211 (778)
.+..++.+.- ..|+++.|.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|-+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444443322 3466677777777777777777777777666322 234666777777777777777777666
Q ss_pred ccCC----ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCC----CHHHHHHHHhhCCCC---C
Q 004024 212 ANWE----VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNN----YLAEAQRLFEEAPVK---D 277 (778)
Q Consensus 212 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g----~~~~A~~~f~~m~~~---d 277 (778)
.+.+ +..+-.|..+|.+.|+++.|...|+.+. +.+..+--.|...|+..+ ..+.|..+..+...+ |
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 5542 2345566677777777777777777665 334455555666666554 445555555555443 3
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHhCC--------CCCcchHHHHHHHHhccCChHHHHHHHHhhc-------cccc--
Q 004024 278 VFTWTAMVSGYVQNGKVDEARMIFDAMP--------EKNTVSWNAMIAGYVQTKRMDMARELFEAMT-------CKNV-- 340 (778)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-------~~~~-- 340 (778)
...|-.+...|.+..-+.. +..|.... .......|.+.......|+++.|...|.... .+|.
T Consensus 414 ~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 4455555555544433222 33333322 1255666666666677777777776666665 1111
Q ss_pred ----cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHh-------cCChhHHHHHHHHHhhcC-cccCccc
Q 004024 341 ----ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQ-------SGYSEDSLRLFIEMKRYG-ERLNRSP 408 (778)
Q Consensus 341 ----~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~-------~g~~~~Al~l~~~m~~~g-~~pd~~t 408 (778)
.+--.|...+-..++.+.|.+.+..+....+ ..|.+|.+ .+...+|..++++..... -.|+..+
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 1122344445555666667777666654222 12223222 245566666666655422 2233332
Q ss_pred ccchHHHhcccccHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh------------cCCHHHHHHHHHhccC---CCh
Q 004024 409 FTSVLSTCANLASLELGKQLHGQLVKVG-FEAGCFVGNALLVMYCK------------CGSVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 409 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k------------~g~~~~A~~~f~~m~~---~d~ 472 (778)
| +-..+.....+..|..-+..+.+.- ..+|++..-+|.+.|.. .+..+.|.++|.++.. +|.
T Consensus 569 l--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 569 L--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred H--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 2 1112333334444444444443321 12455555555554432 2445666777766654 345
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..-|-+...++..|++.+|..+|.+..+... -+.-+|..+...|...|++-.|++.|+...+++.-.-+.....+|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 5556666667777777777777777766532 233456666777777777777777777766666655566667777777
Q ss_pred HhhcCCHHHHHHHHHhC
Q 004024 553 LGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m 569 (778)
+.++|.+.+|.+.....
T Consensus 726 ~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 77777777776655443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=7e-15 Score=169.68 Aligned_cols=341 Identities=12% Similarity=0.013 Sum_probs=272.5
Q ss_pred hcCChHHHHHHHHhCCCC------CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHH
Q 004024 290 QNGKVDEARMIFDAMPEK------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
+..+++.-.-+|....+. +.....-++..+.+.|++++|..++..+. +.+......++..+...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 445555444445444432 44556667888999999999999999988 556667777778888899999999
Q ss_pred HHhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 361 NLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 361 ~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
..|+++.+. +...|..+...+.+.|++++|+..|++.... .|+.. .+..+..++...|+.++|...+..+.+..
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 999998753 3467888889999999999999999999874 46544 55667778899999999999999887664
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMV 511 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~ 511 (778)
-.+ ...+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..|++..+ ..|+ ...+.
T Consensus 175 P~~-~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~ 250 (656)
T PRK15174 175 PPR-GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRR 250 (656)
T ss_pred CCC-HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHH
Confidence 333 33333333 478899999999999987653 233445566788899999999999999998 4565 44667
Q ss_pred HHHHHHhccCcHHH----HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 004024 512 GILSACSHTGLVEK----GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGA 584 (778)
Q Consensus 512 ~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a 584 (778)
.+..++...|+.++ |...|+...+ +.| +...+..+..+|.+.|++++|...+++. ...|+ ..++..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78888999999986 7999998874 445 4678889999999999999999999887 45565 5678888899
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 585 CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+...|+++.|...++++++.+|+++..+..++.+|...|++++|.+.++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998777778999999999999999988876553
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.3e-14 Score=158.20 Aligned_cols=516 Identities=15% Similarity=0.173 Sum_probs=350.6
Q ss_pred chHHHHHHhhCCC--CCcchHHHHHHHH--HcCCChhHHHHHHhhCC------CCCcchHHHHHHHHHcCCChHHHHHHH
Q 004024 108 LDPARQVFDQMPQ--RDLVSWNVMISGY--VRNKSLSAARNLFEMMP------KRDVVSWNTMLSGYAQNGYADAARRIF 177 (778)
Q Consensus 108 ~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~------~~d~~~~~~li~~~~~~g~~~~A~~~~ 177 (778)
++.|.+.|..... |+-+ ...|..++ ...|++..|+.+|.... .+|+.. .+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4777777776652 2222 12223332 34578899999998753 244432 2234566889999999999
Q ss_pred HhcccCCcchHHHHHHHHH------hcCCHHHHHHHHHhcccC---CccHhhHHHHHHHhcCChhHHHHHHhhCCCCC--
Q 004024 178 DRMLEKNEISWNGLLAAYV------QNGRIEEACMLFESKANW---EVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRD-- 246 (778)
Q Consensus 178 ~~m~~~d~~t~~~ll~~~~------~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d-- 246 (778)
.+..+-|+...++++.... ....+..|.+++..+-.. +++..+.|.+.|.--|++..+..+...+....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8888655544444433221 123355666776665543 67788889999999999988888877765221
Q ss_pred ----hhHHHHHHHHHhcCCCHHHHHHHHhhCCCC--C--eehHHHHHHHHHhcCChHHHHHHHHhCCC--C-CcchHHHH
Q 004024 247 ----EVSWNTMITGYAQNNYLAEAQRLFEEAPVK--D--VFTWTAMVSGYVQNGKVDEARMIFDAMPE--K-NTVSWNAM 315 (778)
Q Consensus 247 ----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~l 315 (778)
..+|.-+..+|-..|++++|...|.+.... | +..+-.+...|.+.|+++.+...|++..+ | +..|...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 235777888899999999999998776532 2 34566778889999999999999988865 3 66777777
Q ss_pred HHHHhccC----ChHHHHHHHHhhc---cccccHHHHHHHHHHhcCC------hhHHHHHhhhC-CCCCeeehhhHHHHH
Q 004024 316 IAGYVQTK----RMDMARELFEAMT---CKNVASWNTMITGYAQSGE------ITHARNLFDRM-PQHDCISWAAIIAGY 381 (778)
Q Consensus 316 l~~~~~~~----~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~------~~~A~~~f~~m-~~~d~~~~~~li~~~ 381 (778)
...|+..+ ..+.|..+..... +.|...|-.+..+|-...- +..|..++..- ....+...|.+.+.+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 77777664 5577777777776 4566666666666655443 23334333322 234556778888888
Q ss_pred HhcCChhHHHHHHHHHhhc---CcccCcc-----cccchHH-HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRY---GERLNRS-----PFTSVLS-TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~---g~~pd~~-----t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
...|++++|...|.+.... ...+|.. |..--+. ..-..++.+.|.+++..+++.. | ..|++|.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p------~YId~yl 534 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--P------GYIDAYL 534 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--c------hhHHHHH
Confidence 9999999999999887654 2334442 1111222 2345668888889998887753 1 2455555
Q ss_pred hc-------CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhc--
Q 004024 453 KC-------GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSH-- 519 (778)
Q Consensus 453 k~-------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~-- 519 (778)
+. +.+.+|...+..... .|+..|+-+...|.....+..|-+-|+...+.- ..+|..+..+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 54 556678888877644 577788878778888888888888776655432 34677777777775532
Q ss_pred ----------cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 004024 520 ----------TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAATWGALLGACR 586 (778)
Q Consensus 520 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~ 586 (778)
.+..++|+++|....+ ..| |...-+-+.-.|+..|++.+|.++|.+.. ......+|-.|...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2456677777776654 233 56666777788888999999999988772 2335678888999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|++-.|.++|+..+.. .-+++.....|+.++...|+|.++.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999988874 345667788899999999999998887665544
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=1.1e-14 Score=171.56 Aligned_cols=390 Identities=11% Similarity=0.024 Sum_probs=238.4
Q ss_pred HHHHHHcCCChHHHHHHHHhccc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChh
Q 004024 160 MLSGYAQNGYADAARRIFDRMLE---KNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLG 233 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~---~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 233 (778)
.+......|+.++|++++.+..+ .+...+..+..++...|++++|.+++++.++.+ ...+..+...+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34556677888888888877763 233347777777888888888888887765543 334556666666677777
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 004024 234 DAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK 307 (778)
Q Consensus 234 ~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 307 (778)
+|...+++.. +.+.. +..+...+...|+.++|...++++... +...+..+...+...|..++|+..++....
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 7776666654 33444 666666666677777777766665532 333445555666666666666666665554
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHH-----HhcCCh---hHHHHHhhhCCC---CCeeehh-
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGY-----AQSGEI---THARNLFDRMPQ---HDCISWA- 375 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y-----~k~g~~---~~A~~~f~~m~~---~d~~~~~- 375 (778)
++.... -+. ......++..+ ...+++ ++|+..++.+.+ .++....
T Consensus 179 ~p~~~~-~l~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 179 TPAEKR-DLE----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred CHHHHH-HHH----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 111000 000 00011111111 112223 556666665542 1211111
Q ss_pred ------hHHHHHHhcCChhHHHHHHHHHhhcCcc-cCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 004024 376 ------AIIAGYAQSGYSEDSLRLFIEMKRYGER-LNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALL 448 (778)
Q Consensus 376 ------~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 448 (778)
..+..+...|+.++|+..|+++.+.+.. |+. .. ..+.
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~----------------------------------a~--~~la 279 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW----------------------------------AQ--RWVA 279 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH----------------------------------HH--HHHH
Confidence 1123445667788888888877765421 211 11 1134
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDKD-------VISWNTMIAGYARHGFGKDALMLFESMKTVG-----------IKPDD--- 507 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-----------~~pd~--- 507 (778)
+.|...|++++|+..|+++.+.+ ...+..+..++...|++++|+++++++.... -.||.
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 45666666666666666654321 1234445556667777777777777776531 12332
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGAC 585 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~ 585 (778)
..+......+...|+.++|++.++.+... .+-+...+..+..++.+.|++++|++.+++. ...|+ ...+..+....
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 13345556777888888888888888753 2235677888889999999999999999887 56676 55777777788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
...|+++.|+..++++++..|+++.+.
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 889999999999999999999996543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1e-13 Score=160.32 Aligned_cols=427 Identities=11% Similarity=0.049 Sum_probs=252.1
Q ss_pred HHHhcCCHHHHHHHHHhcccCCccH---hhHHHHHHHhcCChhHHHHHHhhCCCCChhHH-HHH--HHHHhcCCCHHHHH
Q 004024 194 AYVQNGRIEEACMLFESKANWEVVS---WNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSW-NTM--ITGYAQNNYLAEAQ 267 (778)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~-~~l--i~~y~~~g~~~~A~ 267 (778)
...+.|+++.|++.|.+..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3568888889999988888765442 23677777777888888888888775533333 333 44677778888888
Q ss_pred HHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccCChHHHHHHHHhhc---ccc
Q 004024 268 RLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKN 339 (778)
Q Consensus 268 ~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~ 339 (778)
++|+++.+. |...+..++..|.+.++.++|++.++++... +...+..++..+...++..+|.+.++++. +.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 888877643 3445666777778888888888888887764 32333333333333455545777777777 455
Q ss_pred ccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccc
Q 004024 340 VASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL 419 (778)
Q Consensus 340 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 419 (778)
...+..++....+.|-...|.++..+-++ ..+=..... =+.+.|- ++.+.+..|+..- -.+-
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a----~~vr~a~~~~~~~-------~~r~ 264 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAA----EQVRMAVLPTRSE-------TERF 264 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHH----HHHhhcccccccc-------hhhH
Confidence 66677777777788877777777666442 111000000 0000010 1111111110000 0000
Q ss_pred ccHHHHHHHHHHHHHc-CC-CCchh-HHHHHHH---HHHhcCCHHHHHHHHHhccCCC----hhHHHHHHHHHHHcCChH
Q 004024 420 ASLELGKQLHGQLVKV-GF-EAGCF-VGNALLV---MYCKCGSVEEAYHAFEEIVDKD----VISWNTMIAGYARHGFGK 489 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~-g~-~~~~~-~~~~Li~---~y~k~g~~~~A~~~f~~m~~~d----~~~~~~li~~~~~~g~~~ 489 (778)
...+.+..-++.+... +- ++... ...+.+| ++.+.|+..++++.|+.+.... ..+--++.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 1222333333333221 11 22111 1223333 4456677777777777776422 123345667777777777
Q ss_pred HHHHHHHHHHHCC----CCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCC---hHHHHHHHH
Q 004024 490 DALMLFESMKTVG----IKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYG----------VIPN---SKHYTCMVD 551 (778)
Q Consensus 490 ~Al~l~~~m~~~g----~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~ 551 (778)
+|+.+|++..... ..| +......|.-|+..++++++|..+++.+.+.-. -.|+ ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 7777777765432 112 222245666777777777777777777765211 0122 233445566
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
.+...|++.+|++.++++ ...| |..++..+....+..|++..|+..++.+..++|++..+...++..+...|+|++|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 677778888888887777 2334 46677777777788888888888887777788888777888888888888888887
Q ss_pred HHHHHHHhC
Q 004024 630 KVRLKMRDR 638 (778)
Q Consensus 630 ~~~~~m~~~ 638 (778)
++.+...+.
T Consensus 505 ~~~~~l~~~ 513 (822)
T PRK14574 505 LLTDDVISR 513 (822)
T ss_pred HHHHHHHhh
Confidence 776655543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1.2e-13 Score=159.77 Aligned_cols=436 Identities=11% Similarity=0.042 Sum_probs=256.5
Q ss_pred HHHcCCChhHHHHHHhhCCCCCcch---HHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHH---HHHHHhcCCHHHHH
Q 004024 132 GYVRNKSLSAARNLFEMMPKRDVVS---WNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGL---LAAYVQNGRIEEAC 205 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~~d~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~l---l~~~~~~g~~~~a~ 205 (778)
...+.|++..|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4567788888888887776433221 22666777777777777777777775544433333 33555667777777
Q ss_pred HHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHH
Q 004024 206 MLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285 (778)
Q Consensus 206 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li 285 (778)
++++++++.++ .|+..+..++..|.+.++.++|++.++++...+......+.
T Consensus 123 ely~kaL~~dP----------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~ 174 (822)
T PRK14574 123 ALWQSSLKKDP----------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMT 174 (822)
T ss_pred HHHHHHHhhCC----------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHH
Confidence 77777766543 23444455556666666666666666666544333222233
Q ss_pred HHHHh--cCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHH
Q 004024 286 SGYVQ--NGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 286 ~~~~~--~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
.+|.. .++..+|++.++++.+ | +...+..+..+..+.|-...|.++...-. +.++-.-.... +.+.|.
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a 247 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAA 247 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHH
Confidence 33333 3444446666666653 2 45555566666666666666665554432 11111000000 000111
Q ss_pred HHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhc-CcccCcc-cc----cchHHHhcccccHHHHHHHHHHHHH
Q 004024 361 NLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRY-GERLNRS-PF----TSVLSTCANLASLELGKQLHGQLVK 434 (778)
Q Consensus 361 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~-t~----~~ll~a~~~~~~~~~a~~i~~~~~~ 434 (778)
+..+....+.. + .-. +---.+.|+.-++.+... +-.|... -| .--+-++...+...++...++.+..
T Consensus 248 ~~vr~a~~~~~-~---~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 248 EQVRMAVLPTR-S---ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHhhcccccc-c---chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 11100000000 0 000 000122333333333321 1112111 11 1123344555556666666666665
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 004024 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK---------DVISWNTMIAGYARHGFGKDALMLFESMKTVG--- 502 (778)
Q Consensus 435 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g--- 502 (778)
.|.+....+--++.++|...++.++|..+|..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 555555566677788888888888888888876331 22234667778888888888888888887621
Q ss_pred ----------CCCChhH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 004024 503 ----------IKPDDIT-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM- 569 (778)
Q Consensus 503 ----------~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 569 (778)
..||-.. +......+...|++.+|.+.++.+.. ..| |......+.+++...|++.+|++.++..
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1223233 34455678899999999999999964 344 7888899999999999999999999776
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 570 PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 570 ~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
...|+ ..+...+..+....|++..|+.+.+.+.+..|+++.+-
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 45676 45667777888888999999999999999999997443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4.3e-11 Score=120.97 Aligned_cols=335 Identities=17% Similarity=0.234 Sum_probs=223.7
Q ss_pred cCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC----CcchHHHHHHHHhccCChHHHHHHHHh
Q 004024 259 QNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMIAGYVQTKRMDMARELFEA 334 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~t~~~ll~~~~~~~~~~~a~~i~~~ 334 (778)
|.|.+.+ ++-+...+...++..||.|.++--..+.|.+++++.... +..+||++|.+-+-. .++.+..+
T Consensus 191 K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 4455444 444444456678888888888888888888888887653 777888888765433 33667777
Q ss_pred hc----cccccHHHHHHHHHHhcCChhHHHHHh----hhCC----CCCeeehhhHHHHHHhcCChhH-HHHHHHHHhhc-
Q 004024 335 MT----CKNVASWNTMITGYAQSGEITHARNLF----DRMP----QHDCISWAAIIAGYAQSGYSED-SLRLFIEMKRY- 400 (778)
Q Consensus 335 ~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-Al~l~~~m~~~- 400 (778)
|+ .||..|+|+++...++.|+++.|++.+ .+|+ +|...+|.-+|..+.+.+++.+ |..+..+++..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 76 789999999999999999887766554 4444 5778899999999988887744 55666665542
Q ss_pred ---Cccc----CcccccchHHHhcccccHHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 401 ---GERL----NRSPFTSVLSTCANLASLELGKQLHGQLVKVG----FEAG---CFVGNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 401 ---g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
.++| |...|.+.++.|.++.+.+.|.++++.+.... +.++ .+-|.-+.+..+....++.-...++.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 34467889999999999999999998875321 2222 34456678888888899999999998
Q ss_pred ccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc---------HH-H----HHH
Q 004024 467 IVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL---------VE-K----GTE 528 (778)
Q Consensus 467 m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~---------~~-~----a~~ 528 (778)
|.- |+..+-.-++.+....|+++-.-+++..|+..|..-+...-.-++.-.++... +. . |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 854 56666667777878888888888888887776644443333333333332220 00 0 011
Q ss_pred HHH-------HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHH
Q 004024 529 YFY-------SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 529 ~~~-------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
+++ .|. ...-.....+|..-++.|.|+.++|.+++.-. |..|......-|+.+-...++...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 111 111 22234456778888888888888888876433 4445444444556666666667777
Q ss_pred HHHHHHHHh
Q 004024 595 EKAAEVIFE 603 (778)
Q Consensus 595 ~~~~~~~~~ 603 (778)
..+++-+.+
T Consensus 581 ~~~lQ~a~~ 589 (625)
T KOG4422|consen 581 IEVLQLASA 589 (625)
T ss_pred HHHHHHHHH
Confidence 766666644
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=6.2e-10 Score=123.01 Aligned_cols=570 Identities=14% Similarity=0.100 Sum_probs=376.5
Q ss_pred HHHHHHhhcCCchhhhHhhhhCCCC---ChhhHHHHHHHHHhCCCchHHHHHHhh---CCCCCcchHHHHHHHHHcCCCh
Q 004024 66 VAITTHMRNGCCDSALHVFNSMPRR---SSVSYNAMISGYLLNGQLDPARQVFDQ---MPQRDLVSWNVMISGYVRNKSL 139 (778)
Q Consensus 66 ~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~ 139 (778)
...+-....|++++|..++....+. +...|-.|...|-..|+.+++...+-. +.+.|.-.|-.+-....+.|.+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3334445669999999999887763 456899999999999999999876643 3356778899999999999999
Q ss_pred hHHHHHHhhCCCCCcchHHH---HHHHHHcCCChHHHHHHHHhcccCCc-c-------hHHHHHHHHHhcCCHHHHHHHH
Q 004024 140 SAARNLFEMMPKRDVVSWNT---MLSGYAQNGYADAARRIFDRMLEKNE-I-------SWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 140 ~~A~~~f~~m~~~d~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~d~-~-------t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
..|+-.|.+..+.++.-|-. -...|-+.|+...|.+-|.++.+.++ + +--.++..+...++-+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987644444443 36788899999999999999974332 1 2233456677777778888888
Q ss_pred HhcccC-----CccHhhHHHHHHHhcCChhHHHHHHhhCCC----C---------------------------ChhH-HH
Q 004024 209 ESKANW-----EVVSWNSLMGGFVKQKRLGDAKWIFDRMPV----R---------------------------DEVS-WN 251 (778)
Q Consensus 209 ~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~---------------------------d~~~-~~ 251 (778)
+..+.. +...++.++..|.+....+.|......+.. + +..+ ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 877652 345788999999999888888776554431 1 1122 11
Q ss_pred HHHHHHhcCCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC----CcchHHHHHHHHhccC
Q 004024 252 TMITGYAQNNYLAEAQRLFEEAP----VKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMIAGYVQTK 323 (778)
Q Consensus 252 ~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~t~~~ll~~~~~~~ 323 (778)
.+--...+.+...++..-|.... ..++..|.-+..+|.+.|++.+|+.+|..+... +.+.|.-+..+|-..|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 11112223444445544443221 224566888999999999999999999999764 7789999999999999
Q ss_pred ChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee-----ehh-------hHHHHHHhcCChh
Q 004024 324 RMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI-----SWA-------AIIAGYAQSGYSE 388 (778)
Q Consensus 324 ~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~-----~~~-------~li~~~~~~g~~~ 388 (778)
..++|.+.++.++ +.+..+--.|-..|-+.|+.++|.+.+..+..+|.. .|. -....|.+.|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999 566777788889999999999999999998877631 221 2334577888888
Q ss_pred HHHHHHHHHhhcCcc-----c-------------CcccccchH----HHhccccc---HHHHHHH---HHHHHHcCCCCc
Q 004024 389 DSLRLFIEMKRYGER-----L-------------NRSPFTSVL----STCANLAS---LELGKQL---HGQLVKVGFEAG 440 (778)
Q Consensus 389 ~Al~l~~~m~~~g~~-----p-------------d~~t~~~ll----~a~~~~~~---~~~a~~i---~~~~~~~g~~~~ 440 (778)
+=+..-..|...... | ....+...+ .+-.+.++ .+.+..- .......|+..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 766665555432110 1 111122222 22222222 1111111 111122233332
Q ss_pred h--hHHHHHHHHHHhcCCHHHHHHHHHhccCC-----Chh----HHHHHHHHHHHcCChHHHHHHHHHHHHC-C--CCCC
Q 004024 441 C--FVGNALLVMYCKCGSVEEAYHAFEEIVDK-----DVI----SWNTMIAGYARHGFGKDALMLFESMKTV-G--IKPD 506 (778)
Q Consensus 441 ~--~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----d~~----~~~~li~~~~~~g~~~~Al~l~~~m~~~-g--~~pd 506 (778)
. .++.-+|...+|.|+.++|..+...+..- +.. .-..++.+....+++.+|...++.|... + ..|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 2 35566788999999999999998877552 222 2345677778899999999999999874 1 1333
Q ss_pred hh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH--HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004024 507 DI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV--DLLGRAGRLDEAQNLMKNM-PFEPDAATWGALL 582 (778)
Q Consensus 507 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv--~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll 582 (778)
.. .|+..++..+..|+-.--.+++.... ...|+-.++-+++ ..+...|.+.-|+..+-+. ...||....+-++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 33 34445555555555433333333322 2233332333333 3456778888888765433 2344533333333
Q ss_pred HH------H-----HHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 583 GA------C-----RLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 583 ~a------~-----~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+. + .+|-.+-+|....++..++.-. .-.++..++.+|-..|-..-|.+++++..+-
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 22 1 2333456677777777776543 4567889999999999999999999988764
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=6.3e-12 Score=127.32 Aligned_cols=448 Identities=12% Similarity=0.121 Sum_probs=280.0
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCcc-hHHHHHHHHHhcCCHHHHHHHHHhcccC----C----ccHhhHHHHHH
Q 004024 160 MLSGYAQNGYADAARRIFDRMLE----KNEI-SWNGLLAAYVQNGRIEEACMLFESKANW----E----VVSWNSLMGGF 226 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~----~d~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~----~~~~~~li~~~ 226 (778)
|..-|..+....+|+..|+-+.+ ||.- .--.+...+.+.+.+.+|++.++.++.. + +...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44455556666677766665542 2211 1112233445566677777776655432 1 12344444456
Q ss_pred HhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----------------CCeehHHH-----
Q 004024 227 VKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV----------------KDVFTWTA----- 283 (778)
Q Consensus 227 ~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~d~~~~~~----- 283 (778)
.+.|++++|..-|+... .||..+.-.|+-.+..-|+-++..+.|.+|.. |+....|.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 77888888888888765 56666665666667777888888888887642 11111221
Q ss_pred HHHHHHhcC--ChHHHHHHHHhCCCC----Cc-chHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCCh
Q 004024 284 MVSGYVQNG--KVDEARMIFDAMPEK----NT-VSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 284 li~~~~~~g--~~~~A~~l~~~m~~~----~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~ 356 (778)
++.-.-+.. +.++++-.-.++..| |- .-+...+...-.....+.|.. .--.-.--|.+.|++
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d-----------lei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID-----------LEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh-----------hhhhHHHHHHhccCH
Confidence 111111111 112222222222222 10 001111111111111111110 001112347789999
Q ss_pred hHHHHHhhhCCCCCeeehhhHHH-----HHHhcC-ChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHH
Q 004024 357 THARNLFDRMPQHDCISWAAIIA-----GYAQSG-YSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHG 430 (778)
Q Consensus 357 ~~A~~~f~~m~~~d~~~~~~li~-----~~~~~g-~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 430 (778)
+.|.+++.-...+|..+-++-.. -|.+.| ++.+|-+.-+...... +-|....+.--+.....|++++|.+.+.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999988887766544332221 233333 3445544443332211 1121222222223345789999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 004024 431 QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV---DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD- 506 (778)
Q Consensus 431 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd- 506 (778)
+.+...-.....+|| +.-.|-+.|++++|+..|-++. ..++.....+.+.|-...+..+|++++.+... +.|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 988765443444444 2335788999999999998764 36777788888999999999999999987766 6675
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 004024 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGA 584 (778)
Q Consensus 507 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a 584 (778)
+....-+..-|-+.|+-.+|.+++..- |..-| +.++...|..-|....-+++|+..|++. -++|+.+-|.-++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 556777778899999999999987653 34444 7888888988899999999999999988 479999999999877
Q ss_pred H-HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 585 C-RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 585 ~-~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
| ++.||+..|...++.....-|++...+-.|..+....|..
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 6 6679999999999999999999999999999998888764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.7e-13 Score=142.38 Aligned_cols=254 Identities=17% Similarity=0.155 Sum_probs=111.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH-HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS-TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 456 (778)
...+.+.|++++|++++.+.......|+...|-.++. .+-..++.+.|.+.+..+...+-. ++..+..++.. ...|+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445566666777766654433322345444444333 334566677777777777665422 55566677776 68899
Q ss_pred HHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 457 VEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 457 ~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
+++|.+++...-+ ++...|..++..+.+.|+++++.+++++..... ..++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887633 567778888999999999999999999987643 2345566777778889999999999999998
Q ss_pred hhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 534 NRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 534 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
.+. .| +......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 753 56 47778889999999999999888877661 2456778999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 611 MYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 611 ~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
....++.++...|+.++|.++++..-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987643
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=2.6e-11 Score=133.59 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=97.1
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 540 IPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.-+.+.|.-+.++|.+.|++.+|++++..+ +..-+..+|--+...+...|.++.|...+++++.++|++..+-+.|+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 336788999999999999999999999888 22335779999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCceeEE
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWL 649 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 649 (778)
.+|...|+.|+|.++...|-.-+.++.++|.|-
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999998876666666777764
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=1.4e-09 Score=115.60 Aligned_cols=477 Identities=13% Similarity=0.098 Sum_probs=333.3
Q ss_pred CCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhccc---CCccHhhHHHHHHHhcCChhHHHHHHhhCC
Q 004024 167 NGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKAN---WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP 243 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (778)
....+.|+-++.+..+-=+. -.-|.-++++...++.|+.++....+ .+...|.+-...--.+|..+...++.++-.
T Consensus 389 lE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred ccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444555555555421110 11222344455555556555544332 344455554444455555555555554432
Q ss_pred --------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-----CC-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--
Q 004024 244 --------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP-----VK-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK-- 307 (778)
Q Consensus 244 --------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 307 (778)
.-+..-|-.=...+-..|..-.+..+..... +. --.+|+.-...|.+.+.++-|..+|...++-
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 1233344444444444555554444443322 11 2356888888888888888888888777653
Q ss_pred -CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHH
Q 004024 308 -NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAG 380 (778)
Q Consensus 308 -~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~ 380 (778)
+...|......--..|..+.-..++..++ +.....|-....-+-+.|++..|+.++++.-+. +...|-+-+..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56667777766677788888888888877 445566666677777788888888888776543 33567777888
Q ss_pred HHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 004024 381 YAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEA 460 (778)
Q Consensus 381 ~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 460 (778)
-..+.++++|..+|.+... ..|+...|.--+..---++..++|+++.+..++. ++.-...|..+...|-..++++.|
T Consensus 628 e~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 8888888888888888775 3466665555555555677888888888877765 355566788888889999999999
Q ss_pred HHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 461 YHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 461 ~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
+..|..-.+ |+ +-.|-.+...--+.|+.-.|..++++.... .| |...|...+..-.+.|+.++|........++
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999987765 44 456887777777888999999999988774 45 5668889999999999999999988887764
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 537 YGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 537 ~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.+-+...|.--|.+..+.++-..+.+.+++.. -|+.+.-+....+.....++.|...|++++..+|++..++..+-
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 44466778888999999999888888888764 55666666667777788999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKV 655 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~ 655 (778)
..+...|.-++-.+++++..... +.-|..|+-+...|
T Consensus 859 kfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhH
Confidence 99999999999999998776543 34577777654443
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.8e-09 Score=109.41 Aligned_cols=469 Identities=15% Similarity=0.155 Sum_probs=274.2
Q ss_pred cCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 004024 135 RNKSLSAARNLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML--EKN-EISWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d-~~t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
..++...|+.+|++... ++...|---+.+=.++..+..|+.++++.+ -|- ...|--.+-+--..|++..|+++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34566677777776653 445556656666666666667777766654 121 122333333334455666666666
Q ss_pred HhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC--CCCeehHHHHHH
Q 004024 209 ESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP--VKDVFTWTAMVS 286 (778)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~ 286 (778)
++-.+. +||...|++.|..=.+...++.|+.++++.. .|++.+|--...
T Consensus 165 erW~~w-----------------------------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar 215 (677)
T KOG1915|consen 165 ERWMEW-----------------------------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR 215 (677)
T ss_pred HHHHcC-----------------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence 554432 4455555555555555555555555555432 345555544444
Q ss_pred HHHhcCChHHHHHHHHhCCCC------CcchHHHHHHHHhccCChHHHHHHHHhhc---ccc--ccHHHHHHHHHHhcCC
Q 004024 287 GYVQNGKVDEARMIFDAMPEK------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKN--VASWNTMITGYAQSGE 355 (778)
Q Consensus 287 ~~~~~g~~~~A~~l~~~m~~~------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~--~~~~~~Li~~y~k~g~ 355 (778)
.=-++|+..-|..+|....+. +...+++....-.....++.|.-++..++ +.+ ...+..+...=-+-|+
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 444555555555555444331 22334444444444555666666666655 222 2333344333333444
Q ss_pred h---hHHHHH-----hhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-------cccchHHHh-
Q 004024 356 I---THARNL-----FDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-------PFTSVLSTC- 416 (778)
Q Consensus 356 ~---~~A~~~-----f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-------t~~~ll~a~- 416 (778)
. +++.-- ++.+... |-.+|--.+..-...|+.+...++|.+.... ++|-.- .|.-+=-+|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 2 222211 2222222 3345555555555567777777777766542 444211 121111121
Q ss_pred --cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCCh
Q 004024 417 --ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC----KCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 417 --~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~ 488 (778)
....+.+..++++...++ -++...+++.-+=-||+ ++-++..|++++..... |-.-++...|..-.+.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 234577778888887777 34556666666666665 66788888888887644 6666777777777888888
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 489 KDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+....++++.++ ..| |..+|.....--...|+.|.|..+|+-......+..-...|-..||-=...|.++.|..+++
T Consensus 454 DRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 454 DRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 889899988888 556 55677777766777889999999998887754444445567777777788899999999888
Q ss_pred hC-CCCCCHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc----CCCCC--chHHHHHHHhhhcCC
Q 004024 568 NM-PFEPDAATWGALLGACR-----LYG-----------KTELAEKAAEVIFEM----EPENA--GMYVLLSNLYAASGR 624 (778)
Q Consensus 568 ~m-~~~p~~~~~~~Ll~a~~-----~~g-----------~~~~a~~~~~~~~~l----~p~~~--~~y~~L~~~y~~~g~ 624 (778)
+. ...+..-+|-++..-=. ..+ +...|..+|+++... +|... ..+...-++-...|.
T Consensus 532 rlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~ 611 (677)
T KOG1915|consen 532 RLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGT 611 (677)
T ss_pred HHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 77 33455557877653322 233 567788888887753 34321 223344556667788
Q ss_pred cchHHHHHHHHH
Q 004024 625 WGDVSKVRLKMR 636 (778)
Q Consensus 625 ~~~a~~~~~~m~ 636 (778)
-.+...+-+.|-
T Consensus 612 ~~d~~~V~s~mP 623 (677)
T KOG1915|consen 612 EGDVERVQSKMP 623 (677)
T ss_pred hhhHHHHHHhcc
Confidence 888887777764
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.2e-11 Score=130.35 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=138.5
Q ss_pred hHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc------cccccHHHHHHHHHHhcCChh-HHHHHh
Q 004024 294 VDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT------CKNVASWNTMITGYAQSGEIT-HARNLF 363 (778)
Q Consensus 294 ~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~------~~~~~~~~~Li~~y~k~g~~~-~A~~~f 363 (778)
.++|+.+|.+.... ......-+..+|...+++++++.+|+.+. -.+..+|.+.+.-.-+.=.+. -|..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555555553322 23444455556666666666666666555 223444544443322211111 122222
Q ss_pred hhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhH
Q 004024 364 DRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFV 443 (778)
Q Consensus 364 ~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 443 (778)
+.++ ..+.+|.++...|.-+++++.|++.|++..+-+ | ...+.
T Consensus 415 ~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p----------------------------------~faYa 457 (638)
T KOG1126|consen 415 DTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--P----------------------------------RFAYA 457 (638)
T ss_pred hhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--C----------------------------------ccchh
Confidence 2222 245677777777777777888877777765422 2 13344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWN---TMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSH 519 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~---~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 519 (778)
|+-+..-+.....+|.|...|+.....|+..|| -+...|.+.++.+.|+-.|++..+ +.|. .+....+...+-+
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQ 535 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHH
Confidence 444444555556677777777776665554444 345567777777777777777766 5663 3334444444455
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
.|+.|+|+++++.+. .+.|. +-.---.+.++...++.+||+..+++. .+.|+ ..++..+...|++.|+.+.|..
T Consensus 536 ~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 555555555555543 22221 111112233344444555555444444 23333 2334444444445555555554
Q ss_pred HHHHHHhcCCC
Q 004024 597 AAEVIFEMEPE 607 (778)
Q Consensus 597 ~~~~~~~l~p~ 607 (778)
-+--+.+++|.
T Consensus 613 ~f~~A~~ldpk 623 (638)
T KOG1126|consen 613 HFSWALDLDPK 623 (638)
T ss_pred hhHHHhcCCCc
Confidence 44444444444
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=6.7e-09 Score=110.57 Aligned_cols=475 Identities=12% Similarity=0.104 Sum_probs=347.7
Q ss_pred HHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004024 132 GYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
+-......++|+.++.+..+--+ +-.-|.-+|++..-++.|..++.... +.+...|.+-...--.+|+.+....+.
T Consensus 385 aAVelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 33445677778888887653111 11223445667777888888877765 668888888888788888888888887
Q ss_pred HhcccC----C----ccHhhHHHHHHHhcCChhHHHHHHhhCC------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 004024 209 ESKANW----E----VVSWNSLMGGFVKQKRLGDAKWIFDRMP------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP 274 (778)
Q Consensus 209 ~~~~~~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~ 274 (778)
.+.+.. | ...|-.=...+-..|..-.+..+..... +.-..+|+.-...+.+.+.++-|+.+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 765431 2 2234444444444455544444444332 2234688888999999999999999987665
Q ss_pred C---CCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHH
Q 004024 275 V---KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNT 345 (778)
Q Consensus 275 ~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~ 345 (778)
+ .+...|...+..=-..|..++-..+|++.... ....|....+-+-..|+...|+.++.++. +.+..+|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3 35567887777777789999999999888753 55666666777777899999999999988 556678888
Q ss_pred HHHHHHhcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc-ccchHHHhcccccH
Q 004024 346 MITGYAQSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP-FTSVLSTCANLASL 422 (778)
Q Consensus 346 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~ 422 (778)
-+..-....+++.|+.+|.+... +....|.--+.----.+..++|++++++-.+. -|+-.- |..+-..+.+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 89999999999999999998764 45556766666666678899999999887763 355443 33344456667777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
+.++..|..=.+. .+..+.+|-.|.+.=-+.|.+-.|+.+|++..- +|...|-..|..-.++|..+.|..+..+..
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777766554333 366778899999999999999999999998754 477899999999999999999999998887
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AAT 577 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 577 (778)
+. ..-+..-|.--|...-+.+.-......+..- +-|+...-.+..++-...+++.|.+-|.+. ...|| ..+
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 74 3344556666666666666655544444333 334555666777888888999999999877 56676 558
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
|.-+..-...||.-+.-..++.+...-+|.....+...+.
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999999999998766665543
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.6e-09 Score=108.27 Aligned_cols=426 Identities=11% Similarity=0.110 Sum_probs=269.9
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcc----hHHHHH--HHHHcCCChhHH-HHHHhhCC---CCCcchHHHHH
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLV----SWNVMI--SGYVRNKSLSAA-RNLFEMMP---KRDVVSWNTML 161 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~li--~~~~~~g~~~~A-~~~f~~m~---~~d~~~~~~li 161 (778)
+.+-|.|+.+-+ +|.+.++.-+++.|...++- .--.|+ -.|..+.++.-| ++.|-.|. +....+|
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 456788888765 58899999999999854322 122222 234455554433 35666675 3445555
Q ss_pred HHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC----CccHhhHHHHHHHhcCChhHHHH
Q 004024 162 SGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANW----EVVSWNSLMGGFVKQKRLGDAKW 237 (778)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 237 (778)
+.|.+.+ ++-+..+....|+.+||.+.++--..+.|.+++.+.... +..++|.+|.+-.-... .+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HH
Confidence 3455544 666666778889999999999999999999999776543 34578888876544333 55
Q ss_pred HHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHh----hCC----CCCeehHHHHHHHHHhcCChHH-HHHHHHhC
Q 004024 238 IFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFE----EAP----VKDVFTWTAMVSGYVQNGKVDE-ARMIFDAM 304 (778)
Q Consensus 238 ~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m 304 (778)
+..+|. .||..|+|+++...++.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..+..++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 555554 7999999999999999999988776653 333 6888999999999999888754 44444433
Q ss_pred CC--------C----CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee
Q 004024 305 PE--------K----NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI 372 (778)
Q Consensus 305 ~~--------~----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~ 372 (778)
+. | |...|.+.++.|.+..+.+.|.++++.....+.. ..-|.. ++ ..+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~---------~~ig~~------~~-----~~f 399 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW---------KFIGPD------QH-----RNF 399 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------hhcChH------HH-----HHH
Confidence 21 1 6778899999999999999999999876621110 000100 00 112
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
-|..+....++....+.-+..|..|.-.-+-|+..+..-++.|....+.++....++..++..|......+..-+...++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 23445555667777777788888887777778888888888888888888888888888877764333222222221121
Q ss_pred hcCCHHHHHHHHHhccCCChh---HHHHHHHHHHHcCChHHH-HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVI---SWNTMIAGYARHGFGKDA-LMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A-l~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
+.. +.|+.. -+.....-++. ++.++ ...-.+|.+....|. ..+.++.-+.+.|..++|++
T Consensus 480 ~~k------------~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 480 RDK------------LHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred cCC------------CCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHH
Confidence 111 122211 12222111111 11222 222345555444443 44555556789999999999
Q ss_pred HHHHchhhcCCCCChHHHHHHHH---HHhhcCCHHHHHHHHHhC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVD---LLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~---~l~r~g~~~eA~~~~~~m 569 (778)
+|....++..-.|.....++|+. .-.+....-.|...++-|
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99988766666666666665544 334455566666655544
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=6.9e-11 Score=126.65 Aligned_cols=242 Identities=11% Similarity=0.097 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHH-HHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG--FEAGCFVGNALLVMYCKCGSVEE-AYHA 463 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~-A~~~ 463 (778)
.++|+.+|...... +.-......-+-.+|..+++.++++.+|+.+.+.. .-.+..+|++.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555553221 11122233334455666666666666666665432 11244455554433222111111 1222
Q ss_pred HHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC
Q 004024 464 FEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN 542 (778)
Q Consensus 464 f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 542 (778)
.+ +....+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 22 2223567888888888888888888888888887 777 45677777777777778888888887644 457
Q ss_pred hHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCM---VDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~l---v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
+.||+++ .-.|.+.++++.|+-.|+++ .+.|. .++...+...+...|..|+|...+++++-++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 7777764 45677888888888888877 67775 4556666677777888888888888888888888888888888
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
++...++.++|...++.+++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 88888888888888888876
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.3e-09 Score=112.34 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=133.1
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVE 524 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~ 524 (778)
.+|....+.++-.+.|++..+ .|+.+|.--...+.-.+++++|+.=|++.+. +.|+. ..|..+-.+..+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555554432 2334444444445555677777777877777 66754 46777777777888888
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHHcCChHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---------AATWGALLGACRLYGKTELA 594 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------~~~~~~Ll~a~~~~g~~~~a 594 (778)
+....|+..+++ ++-.++.|+....+|...+++++|.+.++.. .++|+ +.+-.+++-.-. .+|+.+|
T Consensus 446 ~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a 522 (606)
T KOG0547|consen 446 ESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQA 522 (606)
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHH
Confidence 888888888774 4445677888899999999999999988765 44444 334444443322 3899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+.+.+++++++|....+|..|+.+-...|+.++|.++|+.-.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998654
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=117.67 Aligned_cols=422 Identities=14% Similarity=0.160 Sum_probs=221.2
Q ss_pred HHHHHHcCCChhHHHHHHhhCCC----CCcch-HHHHHHHHHcCCChHHHHHHHHhcc--cCC------cchHHHHHHHH
Q 004024 129 MISGYVRNKSLSAARNLFEMMPK----RDVVS-WNTMLSGYAQNGYADAARRIFDRML--EKN------EISWNGLLAAY 195 (778)
Q Consensus 129 li~~~~~~g~~~~A~~~f~~m~~----~d~~~-~~~li~~~~~~g~~~~A~~~~~~m~--~~d------~~t~~~ll~~~ 195 (778)
|..-|.-+....+|+..|+-+.+ ||.-. --.+.+.+.+...+..|++.|+..+ -|. ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33456666777888888876553 22211 1123455677788888888887665 121 22344444456
Q ss_pred HhcCCHHHHHHHHHhcccC--CccHhhHHHHHHHhcCChhHHHHHHhhCC----------------CCChhHHHHH----
Q 004024 196 VQNGRIEEACMLFESKANW--EVVSWNSLMGGFVKQKRLGDAKWIFDRMP----------------VRDEVSWNTM---- 253 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------~~d~~~~~~l---- 253 (778)
.+.|+++.|+.-|+...+. ++.+--.|+-++...|+-++.++.|.+|. .||....|.-
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7889999999988887654 55565566667777888888888888875 1233333222
Q ss_pred -HHHHhcCCCH--HHH----HHHHhhCCCCCee---hHH------------------HHHHHHHhcCChHHHHHHHHhCC
Q 004024 254 -ITGYAQNNYL--AEA----QRLFEEAPVKDVF---TWT------------------AMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 254 -i~~y~~~g~~--~~A----~~~f~~m~~~d~~---~~~------------------~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
+.-.-+...- +++ .++..-...||-. -|. .-..-|.++|+++.|++++.-..
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 2222222111 111 1121112222211 121 11224677888888888877776
Q ss_pred CCCcchHHHHHH------HHhccCChHHHHHHHHhhccccccHHHHHH---HHHHhcCChhHHHHHhhhCCCCCeeehhh
Q 004024 306 EKNTVSWNAMIA------GYVQTKRMDMARELFEAMTCKNVASWNTMI---TGYAQSGEITHARNLFDRMPQHDCISWAA 376 (778)
Q Consensus 306 ~~~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li---~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 376 (778)
+.|..|-+.... ..-...++..|.+.-+..+..|-+--.++. +.-...|+++.|.+.+.+....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 665544433322 222234566666666555533222222221 22334577777777777776665543333
Q ss_pred HHH---HHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 377 IIA---GYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 377 li~---~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|..+.+..+|.+++.++.. -++.|+.+.+-|.+.|-+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhc
Confidence 322 345567777777777665431 122233344444555555555555555544432 245566666666666666
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC-SHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~ 529 (778)
.|+-..|.+..-.--. -|+.+-.=|..-|....-+++|+..|++..- ++|+.+-|-.++..| .+.|++.+|.++
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666666555433211 1333322244445555555566666655544 555555555555444 344555555555
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
+....+ .++-+.+...-||.+.+..
T Consensus 683 yk~~hr--kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 683 YKDIHR--KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHH--hCccchHHHHHHHHHhccc
Confidence 555443 2233444444444444333
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=4.9e-10 Score=122.11 Aligned_cols=252 Identities=15% Similarity=0.018 Sum_probs=145.4
Q ss_pred hccCChHHHHHHHHhhc--cccccHHH--HHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCChhHHHH
Q 004024 320 VQTKRMDMARELFEAMT--CKNVASWN--TMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLR 392 (778)
Q Consensus 320 ~~~~~~~~a~~i~~~~~--~~~~~~~~--~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~ 392 (778)
...|+.+.+.+.+..+. .++....- .....+...|+.+.|...++++.+. +......+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555544 22222111 2244566666666666666665442 23445556666677777777777
Q ss_pred HHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---
Q 004024 393 LFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--- 469 (778)
Q Consensus 393 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--- 469 (778)
++.++.+.+..++.. +. ++- ...+..++....+..+.+...++++.++.
T Consensus 209 ~l~~l~k~~~~~~~~-~~----------------~l~-----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEEH-RA----------------MLE-----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHHH-HH----------------HHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 777776654321110 00 000 00111222222333344555555555543
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHH
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCM 549 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 549 (778)
.++..+..+..++...|+.++|.+++++..+ ..||.. ..++.+....++.+++.+..+...+.+. -|...+.++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~l 334 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTL 334 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 3566667777777777777777777777766 344431 1123333344777777777777665422 244556677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
..++.+.|++++|.+.|+.. ...|+...+..|..++...|+.+.|...+++.+++.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77777888888888777766 566777777777777788888888888888777653
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=2e-09 Score=117.94 Aligned_cols=285 Identities=13% Similarity=0.022 Sum_probs=152.2
Q ss_pred HhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc--cccc--cHHHHHHHHHHhcCChhHHHH
Q 004024 289 VQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT--CKNV--ASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 289 ~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~~~--~~~~~Li~~y~k~g~~~~A~~ 361 (778)
...|+++.|.+.+.+..+. ....+.....+....|+.+.+.+.+..+. .|+. .+.-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3467778887777666543 22333444455666677777777777665 2332 233334566666777777777
Q ss_pred HhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCC
Q 004024 362 LFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFE 438 (778)
Q Consensus 362 ~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 438 (778)
.++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLE------------------------- 228 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 76666542 3344555666666666666666666666665422111 000000
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHH---HH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITM---VG 512 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~---~~ 512 (778)
...+..+++.-......+...+.++..++ +++..+..+...+...|+.++|++++++..+ ..||.... ..
T Consensus 229 --~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l 304 (409)
T TIGR00540 229 --QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLC 304 (409)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHH
Confidence 00111111111122233444455555543 3777888888888888888888888888887 45655421 11
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN---MPFEPDAATWGALLGACRLYG 589 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~Ll~a~~~~g 589 (778)
........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. ....|+..++..|...+...|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11122233555555555555544322222223344555555555555555555552 234455555555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 004024 590 KTELAEKAAEVIFE 603 (778)
Q Consensus 590 ~~~~a~~~~~~~~~ 603 (778)
+.+.|.+++++.++
T Consensus 385 ~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 385 DKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.2e-09 Score=107.47 Aligned_cols=350 Identities=13% Similarity=0.076 Sum_probs=233.4
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehh-hHHHHHHhcCC
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWA-AIIAGYAQSGY 386 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~-~li~~~~~~g~ 386 (778)
|.+.+-...-.+-+.|....|...+...+..-+..|.+.+....-..+++.+..+-..++..+...-. -+..+|-...+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 55555555556667777888888877777655666766666665566666666555555443211111 12334555556
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCC--HH-HHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF--EAGCFVGNALLVMYCKCGS--VE-EAY 461 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~--~~-~A~ 461 (778)
.++++.-.......|+.-+...-+-...+.-...++++|..+|+.+.+... -.|..+|+.++ |.+..+ +. -|.
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHH
Confidence 777777777777666543333333333334466788888888888877631 12455555544 333322 21 122
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 462 HAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 462 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
.+++ +.+=-+.|...+.+-|+..++.++|+..|++..+ +.|.. ..|+.+..-|....+...|.+-++... .+.
T Consensus 321 ~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~ 394 (559)
T KOG1155|consen 321 NVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DIN 394 (559)
T ss_pred HHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcC
Confidence 2222 2222345566666777788888888888888877 66764 356666677888888888888888776 445
Q ss_pred C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 541 P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 541 p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
| |-..|-.|..+|.-.+...=|+-+|++. ..+| |..+|.+|...|.+.++.++|++.+++++.....+...|+.|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5 5666777888888888888888888877 5677 57899999999999999999999999999998888899999999
Q ss_pred HhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
+|-+.++.++|...++.-.+.-. . .| .-.|+..++...|.+-..+++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~--~----------------eg-~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSE--L----------------EG-EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH--h----------------hc-ccchHHHHHHHHHHHHHHhhcc
Confidence 99999999999998876544210 0 01 1235566677777776666653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=8.7e-10 Score=120.17 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=172.6
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCccccc--chHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSPFT--SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEE 459 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 459 (778)
.+.|++++|...|.++.+ ..|+..... .........|+.++|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 455666666666666654 234433222 11234455566666666666665554 5567788888999999999999
Q ss_pred HHHHHHhccCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 460 AYHAFEEIVDKDV-----------ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 460 A~~~f~~m~~~d~-----------~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
|.+++..+.+... ..|..++.......+.+...++++++-.. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999888865321 13334444444455556666666665432 34466678888999999999999999
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.+....+ ..|+.... ++......|+.+++.+.+++. ...|+ +..+.++...|...++++.|+..++++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9988765 34554322 223333459999999999877 44565 55678889999999999999999999999999
Q ss_pred CCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 607 ENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 607 ~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
++ ..|..|+.++.+.|+.++|.++++.-
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 97 66889999999999999999998754
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=5.2e-08 Score=100.30 Aligned_cols=405 Identities=15% Similarity=0.175 Sum_probs=247.4
Q ss_pred cCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHh
Q 004024 74 NGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFE 147 (778)
Q Consensus 74 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~ 147 (778)
++....|..+|++.+. ++...|-..+.+=.++..+..|+.++++.. ++-.-.|-.-+-+=-..|++..|+++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556777788888775 455678888888889999999999999865 2223356666777777899999999998
Q ss_pred hCC--CCCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC--C----cc
Q 004024 148 MMP--KRDVVSWNTMLSGYAQNGYADAARRIFDRML--EKNEISWNGLLAAYVQNGRIEEACMLFESKANW--E----VV 217 (778)
Q Consensus 148 ~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~----~~ 217 (778)
+=. +||.-.|++.|+.=.+....+.|+.++++.+ .|++.+|.--..--.++|....++.+++.+++. + ..
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 743 7999999999999999999999999999876 899999988888888999999999999887753 1 12
Q ss_pred HhhHHHHHHHhcCChhHHHHHHhhCC---CCC--hhHHHHHHHHHhcCCCHHHHHHH--------HhhCCCC---CeehH
Q 004024 218 SWNSLMGGFVKQKRLGDAKWIFDRMP---VRD--EVSWNTMITGYAQNNYLAEAQRL--------FEEAPVK---DVFTW 281 (778)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~d--~~~~~~li~~y~~~g~~~~A~~~--------f~~m~~~---d~~~~ 281 (778)
.+.+....-..+..++.|+-+|.-.. +.+ ...|......=-+-|+....... ++.+... |-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 34455555555667777777664432 111 33343333333334443322222 2222222 33456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC----------CcchHHHHHHHH---hccCChHHHHHHHHhhc---cccccHHHH
Q 004024 282 TAMVSGYVQNGKVDEARMIFDAMPEK----------NTVSWNAMIAGY---VQTKRMDMARELFEAMT---CKNVASWNT 345 (778)
Q Consensus 282 ~~li~~~~~~g~~~~A~~l~~~m~~~----------~~~t~~~ll~~~---~~~~~~~~a~~i~~~~~---~~~~~~~~~ 345 (778)
-..+..-...|+.+...++|++.... -...|.-+=-+| ....+.+.+++++...+ +...+++.-
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 66666666667777777777766532 111222111111 23456666777766655 555555555
Q ss_pred HHHHHH----hcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccc
Q 004024 346 MITGYA----QSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL 419 (778)
Q Consensus 346 Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 419 (778)
+=-+|+ ++.++..|++++..... |-.-.+-..|..=.+.++++..-.+|.+...-+ +-|..++......=..+
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHh
Confidence 444443 45666666666665442 333444444555555566666666666665543 22334444444444455
Q ss_pred ccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHH
Q 004024 420 ASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMI 479 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li 479 (778)
|+.+.++.++..++.. .++....++.+.|+.=..+|.++.|+.+++.+.+ +.+-+|-++.
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 6666666666655443 2344445555555555566666666666665544 2333454443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.8e-08 Score=99.95 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSA 516 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a 516 (778)
..+|+-+.+-|....+...|.+-++...+ +|-..|-.|..+|...+...=|+-.|++... .+|+ ...+.++...
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence 33444445555555555555555554433 3445555555555555555555555555555 4553 2344455555
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
|.+.++.++|.+.|.....- | .-+...|..|.++|-+.++.++|...+
T Consensus 442 Y~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555555555555444321 1 112233444444444444444444433
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.24 E-value=1.2e-09 Score=119.68 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=196.3
Q ss_pred hcCCCHHHHHHHHhhCCCC--Ce-ehHHHHHHHHHhcCChHHHHHHHHhCCC--CCc--chHHHHHHHHhccCChHHHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVK--DV-FTWTAMVSGYVQNGKVDEARMIFDAMPE--KNT--VSWNAMIAGYVQTKRMDMARE 330 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~--d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~--~t~~~ll~~~~~~~~~~~a~~ 330 (778)
...|+++.|.+.+.+..+. +. ..+-....++.+.|++++|.+.+.+..+ |+. .........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999999887643 22 2233445667788999999999999754 333 233445778888999999999
Q ss_pred HHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeee---hhhH----HHHHHhcCChhHHHHHHHHHhhc
Q 004024 331 LFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCIS---WAAI----IAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 331 i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~---~~~l----i~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
.++.+. +.+..+...+...|.+.|++++|.+.+..+.+..+.. +..+ ..++...+..+++.+.+.++...
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999998 6677889999999999999999999999887653211 1100 00111111111111222222211
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhH---H
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVIS---W 475 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~---~ 475 (778)
.-+ ..+.++..+.+++..+...|+.++|.+++++..+ ||... +
T Consensus 255 -------------------------------~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 255 -------------------------------QPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred -------------------------------CCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 000 0124778888899999999999999999999866 44331 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--H-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDI--T-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..........++.+++++.+++..+ ..|+.. . ..++...|.+.|++++|.++|+.... +...|+.+.+..+..+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHH
Confidence 2222233345788999999998887 577665 4 45778899999999999999995332 2567999999999999
Q ss_pred HhhcCCHHHHHHHHHhC
Q 004024 553 LGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m 569 (778)
+.+.|+.++|.+++++.
T Consensus 380 l~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999998863
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.2e-11 Score=89.41 Aligned_cols=50 Identities=40% Similarity=0.666 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH 519 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~ 519 (778)
||+++||++|.+|+++|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=1e-09 Score=110.25 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.+++..+. .| +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3456677788999999999999999998754 35678888899999999999999999999884 34 445677778
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...|++++|.++|...............+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998764222234566778889999999999999999876 33444 667888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.|...+++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999998888899999999999999999999887765
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.9e-08 Score=101.89 Aligned_cols=258 Identities=14% Similarity=0.094 Sum_probs=191.2
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee---ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI---SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
.++.+.....+-+..++++.+..++++.+.+.|+. .+..-|..+...|+..+-+.+=.+|.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 34444555555666667777777777766655443 2333455555666655555555555432
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHH
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A 491 (778)
.|.....|-++.-.|--.|+.++|++.|.+...-| ...|-.....|+-.|..++|
T Consensus 308 ----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 308 ----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred ----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 24556667777777777899999999998875533 35799999999999999999
Q ss_pred HHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 492 LMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 492 l~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
+..+...-+ +-| ....+.-+.--|.+.++.+.|.++|.+.. ++.| |+..++-+.-+.-..+.+.+|...|+..
T Consensus 366 maaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 366 MAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 999887766 333 34455666667889999999999998875 6666 4555666666666778888888887765
Q ss_pred --C------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 570 --P------FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 570 --~------~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+ -.+ -..+|+.|..+|++.+.+++|...+++.+.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 112 245788899999999999999999999999999999999999999999999999999987654
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=3.2e-07 Score=98.00 Aligned_cols=305 Identities=12% Similarity=0.165 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHc
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQ-----RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQ 166 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 166 (778)
+..|-.-++...++|++..-+..|++... .-...|...+.-....|-++-+.+++++-.+-++..-+--|.-+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34677777788888888888888877541 2344688888888888888888888888777666667778888888
Q ss_pred CCChHHHHHHHHhcccC----------CcchHHHHHHHHHhcCCHHHH---HHHHHhcccC--C--ccHhhHHHHHHHhc
Q 004024 167 NGYADAARRIFDRMLEK----------NEISWNGLLAAYVQNGRIEEA---CMLFESKANW--E--VVSWNSLMGGFVKQ 229 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~----------d~~t~~~ll~~~~~~g~~~~a---~~~~~~~~~~--~--~~~~~~li~~~~~~ 229 (778)
.++.++|.+.+...+.. +-..|.-+-...+++-+.... -.+++.++.. | -..|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888888888887633 233455555555554433322 2334444432 1 13577777777777
Q ss_pred CChhHHHHHHhhCCC--CChhHHHHHHHHHhcCCCHHHHHHHH-h---hCCCCCeehHHHHHHHHHh--cCChHHHHHHH
Q 004024 230 KRLGDAKWIFDRMPV--RDEVSWNTMITGYAQNNYLAEAQRLF-E---EAPVKDVFTWTAMVSGYVQ--NGKVDEARMIF 301 (778)
Q Consensus 230 g~~~~A~~~~~~m~~--~d~~~~~~li~~y~~~g~~~~A~~~f-~---~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~ 301 (778)
|.++.|+.+|++... -.+.-++.+-+.|++-....-+..+= . ...+.|.+.+...+..+-. +++..-.-.++
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777766441 12222344444444321111111110 0 0001122222222222111 01111111111
Q ss_pred HhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhc---c------ccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee
Q 004024 302 DAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT---C------KNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI 372 (778)
Q Consensus 302 ~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~------~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~ 372 (778)
-+-...++.+|..-+.. ..|+..+-...+.+++ . +-...|..+.+.|-..|+++.|+.+|++..+-+-.
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 00000134444443333 2345556666666665 1 12246788888999999999999999987764332
Q ss_pred -------ehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 373 -------SWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 373 -------~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.|..-...=.++.+++.|+++.++..
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 34444444456677788888776654
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.22 E-value=4.8e-11 Score=124.10 Aligned_cols=249 Identities=14% Similarity=0.156 Sum_probs=85.4
Q ss_pred HHHHHhcCChhHHHHHhhhC-CC----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 347 ITGYAQSGEITHARNLFDRM-PQ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m-~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
..++.+.|++++|.+++++. .. .|..-|..+.......++.++|+..++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555321 11 13333443444444445555555555555443311 22223333333 34455
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-----DKDVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
.++|.++.....+. .+++..+..++..|.+.|+++++..+++... ..+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554443322 1334445556666677777777777776643 2355667777777777777777777777
Q ss_pred HHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 004024 497 SMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP- 573 (778)
Q Consensus 497 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p- 573 (778)
+..+ ..|+ ......++..+...|+.+++.+++....+.. ..+...+..+..+|...|+.++|...+++. ...|
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7777 5665 3455666677777777777777777665542 334455667777777777777777777766 2234
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|+.+...+..++...|+.+.|..+.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 455666777777777777777777776654
No 53
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=4.2e-08 Score=105.32 Aligned_cols=372 Identities=14% Similarity=0.160 Sum_probs=196.7
Q ss_pred HHHHHHhhcCCchhhhHhh--hhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHH
Q 004024 66 VAITTHMRNGCCDSALHVF--NSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 66 ~~~~~~~~~g~~~~A~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
+.|+.|.+.|++..|.+.. ++-+..|......+..++.+..-++.|-.+|+++..++-. +..|-+-.-+.+|+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHHHH
Confidence 5577888999888887543 2233456666666777777777778888888887755432 33333333344454
Q ss_pred HHHhhCCCCCcch----H--------------------HH---HHHHHHcCCChHHHHHHHHhcccCCcc--hHHHHHHH
Q 004024 144 NLFEMMPKRDVVS----W--------------------NT---MLSGYAQNGYADAARRIFDRMLEKNEI--SWNGLLAA 194 (778)
Q Consensus 144 ~~f~~m~~~d~~~----~--------------------~~---li~~~~~~g~~~~A~~~~~~m~~~d~~--t~~~ll~~ 194 (778)
++-+-.....+++ | |. .|.+......+..|+.+++.+...+.. -|.-+..-
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadh 774 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADH 774 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHH
Confidence 4433221111111 0 11 122223344445555555554433222 24555555
Q ss_pred HHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCC--hhHHHHHHHHHhcCCCHHHHHHHHhh
Q 004024 195 YVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRD--EVSWNTMITGYAQNNYLAEAQRLFEE 272 (778)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d--~~~~~~li~~y~~~g~~~~A~~~f~~ 272 (778)
|+..|+++.|.++|-+. ..++--|.+|.+.|++++|.++-.+...|. ..+|-+-..-.-+.|++.+|.+++-.
T Consensus 775 yan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 775 YANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 66666666666665432 234455566666666666666655554332 23344444445556666666666655
Q ss_pred CCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC-CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHH
Q 004024 273 APVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK-NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYA 351 (778)
Q Consensus 273 m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~ 351 (778)
+..||. -|..|-+.|..++.+++..+-... -..|-..+..-+...|++..|..-|-+. .-|.+-++||-
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-----~d~kaavnmyk 919 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-----GDFKAAVNMYK 919 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-----hhHHHHHHHhh
Confidence 555543 345566666666666655544322 2334455556666667777666655433 23556677777
Q ss_pred hcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHH
Q 004024 352 QSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQ 431 (778)
Q Consensus 352 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 431 (778)
..+-+++|.++-..-...|..- .+.-..++.=-.+.|.+++++. |+ +...++-.+..+.++.|..+-+.
T Consensus 920 ~s~lw~dayriaktegg~n~~k--~v~flwaksiggdaavkllnk~---gl------l~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEK--HVAFLWAKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHH--HHHHHHHHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchhhHHHHHHH
Confidence 7777777777655433222211 1111122222235555555542 10 11122334455667777666665
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004024 432 LVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD 471 (778)
Q Consensus 432 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 471 (778)
..+... +.+ .--+...+-..|++++|-+.+-+..+-|
T Consensus 989 ~~k~k~-~~v--hlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 989 AAKDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 555432 222 2234445667899999988887766533
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.5e-08 Score=99.74 Aligned_cols=303 Identities=13% Similarity=0.165 Sum_probs=195.5
Q ss_pred cCChHHHHHHHHhCCCCCcch---HHHHHHHHhccCChHHHHHHHHhhc-cccc------cHHHHHHHHHHhcCChhHHH
Q 004024 291 NGKVDEARMIFDAMPEKNTVS---WNAMIAGYVQTKRMDMARELFEAMT-CKNV------ASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~~~~t---~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~------~~~~~Li~~y~k~g~~~~A~ 360 (778)
+.+.++|.++|-+|.+.|..| -.++.+.|-+.|..|.|..+|..+. .||. .+.-.|..-|.+.|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 467788888888887765444 4467778888888888888888877 4443 23445677788999999999
Q ss_pred HHhhhCCCCCee---ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC
Q 004024 361 NLFDRMPQHDCI---SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF 437 (778)
Q Consensus 361 ~~f~~m~~~d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 437 (778)
.+|..+.+.+.. ..-.|+..|-+..+|++|++.-+++...|-.+..+-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 999998774443 4455788888888999999888888765533332211
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVG 512 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ 512 (778)
...|.-|...+.-..+++.|..++.+..+-| +..=-.+...+...|+++.|++.++...++ .|+. .+...
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~ 254 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEM 254 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 1123334455556677888888888775532 223333456678889999999999988884 4553 35566
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCh
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM-KNMPFEPDAATWGALLGACRLYGKT 591 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~Ll~a~~~~g~~ 591 (778)
+..+|.+.|+.+++..++..+... .+....-..|.+......-.++|...+ +...-+|+...+..|+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~------- 324 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY------- 324 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh-------
Confidence 777888888888888877776543 233333333434333333333443333 223344554444433332
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSV 660 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 660 (778)
.-.+ ++.|+|.+.....+.|....++..|.+-.-..+-+.|.|.-
T Consensus 325 -------------~l~d-----------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 325 -------------HLAD-----------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred -------------hhcc-----------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 1111 23466888888888888877888888777777777777754
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=4.2e-11 Score=87.90 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=47.3
Q ss_pred CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcc
Q 004024 369 HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418 (778)
Q Consensus 369 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~ 418 (778)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=4.1e-06 Score=89.78 Aligned_cols=448 Identities=15% Similarity=0.188 Sum_probs=272.6
Q ss_pred HHHhhcCCchhhhHhhhhCCCC-----ChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHH
Q 004024 69 TTHMRNGCCDSALHVFNSMPRR-----SSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
....++|+.....+.|++.+.. ....|...|......+-++-+.+++++-.+-++..-+--|.-+++.+++++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 3445788888888888776542 44578888888888899999999999887666666778888899999999999
Q ss_pred HHHhhCCCC----------CcchHHHHHHHHHcCCChH---HHHHHHHhcc--cCC--cchHHHHHHHHHhcCCHHHHHH
Q 004024 144 NLFEMMPKR----------DVVSWNTMLSGYAQNGYAD---AARRIFDRML--EKN--EISWNGLLAAYVQNGRIEEACM 206 (778)
Q Consensus 144 ~~f~~m~~~----------d~~~~~~li~~~~~~g~~~---~A~~~~~~m~--~~d--~~t~~~ll~~~~~~g~~~~a~~ 206 (778)
+.+...... +-..|+-+-+..+++-+.- ....+++.++ -+| .+.|++|.+-|.+.|.++.|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 998887633 3345666666666654433 3445566665 234 4579999999999999999999
Q ss_pred HHHhcccC--CccHhhHHHHHHHhcCChhHHHHHH-hh---CCCCChhHHHHHHHHHhc--CCCHHHHHHHHhhCCCCCe
Q 004024 207 LFESKANW--EVVSWNSLMGGFVKQKRLGDAKWIF-DR---MPVRDEVSWNTMITGYAQ--NNYLAEAQRLFEEAPVKDV 278 (778)
Q Consensus 207 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~-~~---m~~~d~~~~~~li~~y~~--~g~~~~A~~~f~~m~~~d~ 278 (778)
++++.+.. .+.-|+.+.+.|+....-.-+.++= .. -.+.|...+...+.-+.. ++...-.-.++-+-...++
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 99988764 3445667777776543322222221 00 001111111111111100 0111111111111112255
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHhCCCC---------CcchHHHHHHHHhccCChHHHHHHHHhhccccc-------cH
Q 004024 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEK---------NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNV-------AS 342 (778)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-------~~ 342 (778)
..|..-+.. ..|+..+-...|.+..+. -...|..+.+.|-..|+++.|+.+|+.....+- .+
T Consensus 350 ~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 566555543 346666666666665432 234688889999999999999999999883333 34
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
|-.-..+=.+..+++.|+++.++... |... . -.|..++.+-.+ .+++.+ ..|+-.++.-...|.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~----~-~~~yd~~~pvQ~-rlhrSl---------kiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNP----E-LEYYDNSEPVQA-RLHRSL---------KIWSMYADLEESLGT 492 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCch----h-hhhhcCCCcHHH-HHHHhH---------HHHHHHHHHHHHhcc
Confidence 55555555666678888888776542 2110 0 223333333222 122211 123333344445677
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCh-hHHHHHHHHHHHc---CChHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDV-ISWNTMIAGYARH---GFGKDALM 493 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~-~~~~~li~~~~~~---g~~~~Al~ 493 (778)
++..+.+++.++...+.....+-| ....+-...-++++.+++++-.. |++ ..||.-+.-+... -+.+.|..
T Consensus 493 festk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 888888888888877654443333 22234455568888888887654 554 3688777655532 36788999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHH--hccCcHHHHHHHHHHchh
Q 004024 494 LFESMKTVGIKPDDITMVGILSAC--SHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 494 l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~ 535 (778)
+|++..+ |..|...-+.-++-|- -.-|+...|+.+++....
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999888 6777766554454432 234777777777776543
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.10 E-value=1.1e-07 Score=104.98 Aligned_cols=467 Identities=12% Similarity=0.126 Sum_probs=251.8
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHhhCCC----CCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHH
Q 004024 120 QRDLVSWNVMISGYVRNKSLSAARNLFEMMPK----RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAY 195 (778)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~ 195 (778)
.||-+||.+||.-|+..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+. .|-+-||+.|+.+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 466677777777777777777666 6665542 23345666666666666665553 45566677777777
Q ss_pred HhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-
Q 004024 196 VQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP- 274 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~- 274 (778)
...|++.. ++..++ -. -.++..+...|....-..++-.+.
T Consensus 94 r~hGDli~-fe~veq-------dL-------------------------------e~i~~sfs~~Gvgs~e~~fl~k~~c 134 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DL-------------------------------ESINQSFSDHGVGSPERWFLMKIHC 134 (1088)
T ss_pred HhccchHH-HHHHHH-------HH-------------------------------HHHHhhhhhhccCcHHHHHHhhccc
Confidence 77766554 111111 00 112222233333333333322211
Q ss_pred CC-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccC-ChHHHHHHHHhhc-cccccHHHHHHHH
Q 004024 275 VK-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTK-RMDMARELFEAMT-CKNVASWNTMITG 349 (778)
Q Consensus 275 ~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~-~~~~a~~i~~~~~-~~~~~~~~~Li~~ 349 (778)
.| ....-...+.-..-.|.++.+++++..|... +. ++..+++-+.... .+++-..+-.... .+++.++.++++.
T Consensus 135 ~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 135 CPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 11 0001112233333445555555555555432 11 1111233322221 1222222222222 4788888888888
Q ss_pred HHhcCChhHHHHHhhhCCCCCe----eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHH
Q 004024 350 YAQSGEITHARNLFDRMPQHDC----ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELG 425 (778)
Q Consensus 350 y~k~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 425 (778)
-.-.|+++.|..++.+|.++.. .-+-.++-| .+....+..+++-|+..|+.|+..|+.--+-.|...|....+
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888999999999988887543 223334444 777788888899999999999999988777776664443322
Q ss_pred HHH-----------HHHHH----------------------H---cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004024 426 KQL-----------HGQLV----------------------K---VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD 469 (778)
Q Consensus 426 ~~i-----------~~~~~----------------------~---~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 469 (778)
... ...+. + .|+.....+|.-.+. ....|.-++..++-..+..
T Consensus 291 ~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 291 EEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred ccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcC
Confidence 211 00000 0 133322233322221 1224555566666555543
Q ss_pred C-------ChhHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCChh------------
Q 004024 470 K-------DVISWNTMIAGYARHG----------------------FGKDALMLFESMKTVGIKPDDI------------ 508 (778)
Q Consensus 470 ~-------d~~~~~~li~~~~~~g----------------------~~~~Al~l~~~m~~~g~~pd~~------------ 508 (778)
| ++..+..++.-|.+.- +..+..++... ..||..
T Consensus 370 pt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 370 PTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHH
Confidence 2 3334444443332211 11111111111 123321
Q ss_pred ----------------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 004024 509 ----------------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-- 570 (778)
Q Consensus 509 ----------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-- 570 (778)
.-..++.+|...-+..++...-+.... +-+ ...|..||+.+.+..++++|..+..+..
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 112233334433333444332222211 111 2568999999999999999999998884
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCC
Q 004024 571 ---FEPDAATWGALLGACRLYGKTELAEKAAEVIFEM---EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVT 644 (778)
Q Consensus 571 ---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l---~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~ 644 (778)
+.-|..-+..+.....+++....+..+.+...+. +|.-......+-|--+.+|+.+...+..+.....|+.. .
T Consensus 521 d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t 599 (1088)
T KOG4318|consen 521 DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T 599 (1088)
T ss_pred chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c
Confidence 2234455777888888888888888888777652 34444556677788889999999999999999988876 4
Q ss_pred ceeE
Q 004024 645 GYSW 648 (778)
Q Consensus 645 g~s~ 648 (778)
|--|
T Consensus 600 gPl~ 603 (1088)
T KOG4318|consen 600 GPLW 603 (1088)
T ss_pred ccce
Confidence 5444
No 58
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=2.8e-06 Score=91.70 Aligned_cols=408 Identities=19% Similarity=0.173 Sum_probs=223.4
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCc-chHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHH
Q 004024 160 MLSGYAQNGYADAARRIFDRMLEKNE-ISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWI 238 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~~d~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (778)
.|.+|....++++|+.+-+..-.|.. ..-.+.+.++...|+-+.|-++-. .+- --.+-|..|.+.|.+-.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----sdg-d~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE----SDG-DGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----ccC-ccHHHHHHHHHcCCchHHHHh
Confidence 45566666666666665554433321 122334445555555555544321 111 123557778888887777655
Q ss_pred Hhh--CCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeeh---------------------------HHHHHHHHH
Q 004024 239 FDR--MPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFT---------------------------WTAMVSGYV 289 (778)
Q Consensus 239 ~~~--m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~---------------------------~~~li~~~~ 289 (778)
-.. ....|......+..++.+...++.|-.+|+++..+|-.. -......+.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 321 123344444555555555555566666666555432210 001111222
Q ss_pred hcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhcccc--ccHHHHHHHHHHhcCChhHHHHHhhhCC
Q 004024 290 QNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKN--VASWNTMITGYAQSGEITHARNLFDRMP 367 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 367 (778)
+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+...+ .-.|..+.+-|+..|+++.|+++|-+..
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 2333333333332211 11112233334444555555555444222 1224444455555555555555554332
Q ss_pred CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHH
Q 004024 368 QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNAL 447 (778)
Q Consensus 368 ~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 447 (778)
.++--|..|.++|++++|.++-.+-. |-+.....|-+-
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~~-------------------------------------~~e~t~~~yiak 830 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEECH-------------------------------------GPEATISLYIAK 830 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHhc-------------------------------------CchhHHHHHHHh
Confidence 23334455555555555554433221 222334445455
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEK 525 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 525 (778)
..-.-+.|++.+|++++-.+..|+.. |..|-++|..++.+++.++- .||. .|-..+..-+-..|++..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhH
Confidence 55566788999999998888888753 77889999999998888763 4443 355566667778899999
Q ss_pred HHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CC-HHHHHHHH------HHHHHcCChHHHH
Q 004024 526 GTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE---PD-AATWGALL------GACRLYGKTELAE 595 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~---p~-~~~~~~Ll------~a~~~~g~~~~a~ 595 (778)
|.+.|-+... |..-+++|-.++.|++|.++-+.-+-. .. ...|.--+ ..+-+||-++.|.
T Consensus 901 ae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 901 AEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 9888866532 677889999999999999988765311 11 23443222 2234556555554
Q ss_pred HHH------HHHHhc-----CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 596 KAA------EVIFEM-----EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 596 ~~~------~~~~~l-----~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..+ +-++++ ...-+..++.++..+...|++++|.+.+-...+.+
T Consensus 971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 322 222222 23345678888999999999999988776555443
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=1.6e-08 Score=115.18 Aligned_cols=211 Identities=12% Similarity=-0.014 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
+++++|...+..+++.. +.+...+..+..++...|++++|...|++..+ | +...|..+...|...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44677777777777664 55677888888899999999999999999865 4 45678889999999999999999999
Q ss_pred HHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004024 497 SMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP 573 (778)
Q Consensus 497 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 573 (778)
+..+ +.|+.. .+..++.++...|+.++|...+..+... ..| +...+..+...|...|+.++|...++++ +..|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9998 677654 3334455567789999999999987653 234 3555777888999999999999999887 5556
Q ss_pred CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 574 DAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 574 ~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.. .++.|...+...| +.+...++++++..-..+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 644 4555555666666 4788888888875544444444588899999999998888 666554
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.9e-07 Score=96.33 Aligned_cols=446 Identities=15% Similarity=0.097 Sum_probs=236.2
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHhh--CCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCC-CCcchHHHHHHHHHc
Q 004024 90 RSSVSYNAMISGYLLNGQLDPARQVFDQ--MPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPK-RDVVSWNTMLSGYAQ 166 (778)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 166 (778)
.|+..---+.++|.-.|....|..+... +...|.....-....+.+..+++.|..+...-.. .+++++-.-=. +.
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--AN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hc
Confidence 3444444566777777777776665543 4466777777777778888888888888774321 11211110000 00
Q ss_pred CCChHHHHHHHHhcccCCcch--HHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCC
Q 004024 167 NGYADAARRIFDRMLEKNEIS--WNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~d~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (778)
.-..+.+. ++...+..+ +-.-.+.|......++|++.+.+++..|+..+.++...-... +-.+.+.|+.+..
T Consensus 125 ~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 125 TLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLES 198 (611)
T ss_pred eeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhc
Confidence 00000000 111111111 111112345556677888888887777766554443322221 1112122222222
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhh----C---------C-------CCCeehHHHHHHHHHhcCChHHHHHHHHhC
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEE----A---------P-------VKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~----m---------~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 304 (778)
.|....+ ..+.+.-+.+|+- + + ..|+...-.-..-+...+++.+..++++..
T Consensus 199 l~~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~l 270 (611)
T KOG1173|consen 199 LDLAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEEL 270 (611)
T ss_pred ccHHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHH
Confidence 2211100 0011111112210 0 0 123333444555677788899999999888
Q ss_pred CCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe---eehh
Q 004024 305 PEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC---ISWA 375 (778)
Q Consensus 305 ~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~ 375 (778)
.+. ....+..-|.++...|+..+-..+=..++ |....+|-++.--|.-.|..++|++.|.+...-|. ..|-
T Consensus 271 le~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 271 LEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred HhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 765 33344455667777777666555555555 66778899999888888999999999988765443 4788
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.....|+-.|..+.|+..|...-+-= +-..-.+--+---|.+.++++.|.+.+.++.... +.|+.+
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv------------ 416 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLV------------ 416 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchh------------
Confidence 88888999999999988887654420 0000001111112334444444444444443322 334444
Q ss_pred CHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---C-ChhHHHHHHHHHhccCcHHHHHHH
Q 004024 456 SVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTV--GIK---P-DDITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 456 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~--g~~---p-d~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.+-+.-..-..+.+.+|..+|+..... .+. + -..+++.+..+|.+.+..++|+..
T Consensus 417 -------------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 417 -------------------LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred -------------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 444444334444455555555444310 000 1 123455555666666666666666
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACR 586 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~ 586 (778)
|+.... -.+-+..+|+.+.-.|.-.|+++.|.+.|.+. .++||..+-..+|+.+.
T Consensus 478 ~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 665543 12225666667777777777777777777665 56777766666666544
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.3e-06 Score=92.86 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYAR-HGFGKDALMLFESMKTVGIKPDD--ITMVGILSA 516 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~-~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a 516 (778)
.--++|+.+|. +..+.+++.-...+. |....=+.+..++-. .....+|.+++...-+ -.|+. +.....+.-
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 34466777775 556677777776655 333333333333332 2357778888877766 34554 334444455
Q ss_pred HhccCcHHHHHHHHH--------HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHH
Q 004024 517 CSHTGLVEKGTEYFY--------SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--------PFEPD-AATWG 579 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~~ 579 (778)
....|+++.|.+++. .+.+ .+- .+.+-..++.++.+.+.-+-|-.++.+. +-++. ..+|.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 678899999999988 4432 233 3445667888888888755555554433 32333 23444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 580 ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 580 ~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
-+..-=.++|+-+.|...++++++..|++....+.|.-.|+... .+.|..+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 44455567899999999999999999999999999999988763 4455444
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=6.9e-08 Score=95.12 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=135.0
Q ss_pred CChHHHHHHHHhcccCCcchH---HHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCC
Q 004024 168 GYADAARRIFDRMLEKNEISW---NGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244 (778)
Q Consensus 168 g~~~~A~~~~~~m~~~d~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (778)
...++|.++|-+|.+.|..|+ -+|.+.|.+.|..+.|+.+|....+.--.|++-
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q----------------------- 105 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ----------------------- 105 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH-----------------------
Confidence 455566666666664444433 455566666666666766666554431111110
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCe---ehHHHHHHHHHhcCChHHHHHHHHhCCCCCcc--------hHH
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDV---FTWTAMVSGYVQNGKVDEARMIFDAMPEKNTV--------SWN 313 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--------t~~ 313 (778)
-....-.|..-|...|-+|.|+.+|..+.+.+. .....|+..|-+..+|++|++.-+++.+-+.. .|.
T Consensus 106 -r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 106 -RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred -HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 112234456667777888888888877765333 34556788888888888888887766553222 344
Q ss_pred HHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee----ehhhHHHHHHhcCC
Q 004024 314 AMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI----SWAAIIAGYAQSGY 386 (778)
Q Consensus 314 ~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----~~~~li~~~~~~g~ 386 (778)
-+...+....+.+.|+.++..+. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. .-..|..+|.+.|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 44455555677888888888777 455666666778888888888888888888776652 45566777888888
Q ss_pred hhHHHHHHHHHhhc
Q 004024 387 SEDSLRLFIEMKRY 400 (778)
Q Consensus 387 ~~~Al~l~~~m~~~ 400 (778)
+++.+..+.++.+.
T Consensus 265 ~~~~~~fL~~~~~~ 278 (389)
T COG2956 265 PAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888877777654
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.99 E-value=2.3e-07 Score=94.41 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=159.7
Q ss_pred cCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHh
Q 004024 291 NGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLF 363 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f 363 (778)
.|++.+|.++..+-.+. ....|.....+.-..|+.+.+-++..++- .++..+.-+........|+++.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 36666666666554332 33344444555566666666666666665 223344555556666777777777666
Q ss_pred hhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 364 DRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 364 ~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
+++. .++..........|.+.|++.+.+.++.+|.+.|+--|+. ..++ .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e-----------------~~~l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE-----------------AARL-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH-----------------HHHH-----------H
Confidence 6543 3455666777777888888888888888887776433321 1111 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 517 (778)
..+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++-.+.+..|+ ...+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhh
Confidence 12233333333333333333344454443 3455555666666677777777777777666666665 2223345
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
...++.+.-.+..+.-.+.++..| ..+.+|..+|.+.+.|.+|.+.++.. +..|+...|.-+..++-..|+.+.|..
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 555555555555555555445444 44556666666666666666666644 556666666666666666666666666
Q ss_pred HHHHHHh
Q 004024 597 AAEVIFE 603 (778)
Q Consensus 597 ~~~~~~~ 603 (778)
..+..+-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 6665553
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.2e-05 Score=86.75 Aligned_cols=258 Identities=18% Similarity=0.211 Sum_probs=165.5
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
|++|.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+ .-|+..|.-++.++++.|.+++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555544444433 45799999999999999999998843 2356789999999999999999999998776
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
++ .-+|.++ +.|+-+|++.+++.|-++++. -|+..-......-|...|.++.|.-.+.. .+.|..
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence 65 6677665 479999999999999999984 67888888889999999999988887753 467888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeC-------CEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCc
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQ-------NKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGF 687 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~-------~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy 687 (778)
|+..+...|.+..|...-++...-..-|+.+...|+-+ .-+|--+ | ..+|++|.+.-.+.||
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv-----h------adeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIV-----H------ADELEELIEYYQDRGY 1294 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEE-----e------hHhHHHHHHHHHhcCc
Confidence 88888888888877765444433333233332222210 0011111 1 1356777777777777
Q ss_pred ccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCC--------CCcEEEEecccccCccchhhHHh
Q 004024 688 VYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPA--------GRPIRVMKNLRVCEDCHNAIKHI 748 (778)
Q Consensus 688 ~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~--------~~~i~i~knlr~c~dch~~~k~~ 748 (778)
--..-..+..--.=|+.++- .- --|||-|+--.... .+.+-|-|=+|-|..-|-+..++
T Consensus 1295 FeElIsl~Ea~LGLERAHMg-mf-TELaiLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMG-MF-TELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHH-HH-HHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 43321111000000111110 01 11444443221100 23455668899999888776554
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=1.1e-07 Score=95.45 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=136.4
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..+..+...|...|++++|+..|++..... | .+...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--P----------------------------------DDYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHHH
Confidence 345566677777788888888877775432 2 2334555566777
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 527 (778)
...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++.......|. ...+..+...+...|+.++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888876643 3455677777778888888888888888776432232 334555666777888888888
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
+.|....+.. +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|+.+.|....+.+.+..
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8888776531 223566777888888888888888888776 2223 45566677777778888888888888776654
Q ss_pred C
Q 004024 606 P 606 (778)
Q Consensus 606 p 606 (778)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 4
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=4.5e-08 Score=102.10 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=154.9
Q ss_pred ccHHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 420 ASLELGKQLHGQLVKVG-FEA--GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666777776776432 222 245677788889999999999999998865 367899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-
Q 004024 494 LFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-P- 570 (778)
Q Consensus 494 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~- 570 (778)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 77864 5777888888999999999999998875 3554432222333455678899999999654 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 571 FEPDAATWGALLGACRLYGKTELAEKAAEVIF-------EMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 571 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..|+...|. ......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333332 222335665444 2444444 5667777899999999999999999999998877643
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7e-07 Score=92.71 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEK 525 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~ 525 (778)
.+.-+|+.-.|..-|+.... | ++..|--+...|++..+.++-...|.+... +.| |..+|-.-.....-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHH
Confidence 45678999999999998865 3 333388888999999999999999999988 666 45567666666667788999
Q ss_pred HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 526 GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
|..-|+..+ .+.| ++..|-.+.-++.|.+++++++..|++. .++.-+.+|+-....+..+++++.|.+.+++++
T Consensus 413 A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999998876 5666 4667777888888999999999999987 333446688888888999999999999999999
Q ss_pred hcCCC------CCchHHHHHHHhhh-cCCcchHHHHHHHHH
Q 004024 603 EMEPE------NAGMYVLLSNLYAA-SGRWGDVSKVRLKMR 636 (778)
Q Consensus 603 ~l~p~------~~~~y~~L~~~y~~-~g~~~~a~~~~~~m~ 636 (778)
+|+|. ++.+++.=+-+..+ .++.+.|.++.....
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 99999 77777765554443 255556666655443
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.94 E-value=2.1e-08 Score=110.39 Aligned_cols=263 Identities=13% Similarity=0.149 Sum_probs=192.2
Q ss_pred HHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004024 392 RLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD 471 (778)
Q Consensus 392 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 471 (778)
.++-.|+..|+.||.+||.+++.-|+..|+.+.|- ++..|.-..++.+..++++++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999988888999999999999999999887775 788
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
..+|+.|..+|++||+... ++..++ -...+...++..|.-..-..++..+.-..+..||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999866 333333 1233445566667666666666655444456666543 556
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 552 LLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG-KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
.+.-.|.++.+.++...+|...-.......|.-|..-. .++.-....+.+.+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66778999999999999984432111111355555544 34444444444445 34 45888888888899999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCcc
Q 004024 631 VRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLV 694 (778)
Q Consensus 631 ~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~ 694 (778)
+...|+++|..-.|.+-|--+- |..+- .-++...+-|.+.|..|+.+.+
T Consensus 226 ll~emke~gfpir~HyFwpLl~--------g~~~~-------q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLL--------GINAA-------QVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhh--------cCccc-------hHHHHHHHHHHHhcCCCCcchh
Confidence 9999999999776665554332 22222 2455667788899999987643
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=98.93 E-value=9.1e-08 Score=109.05 Aligned_cols=177 Identities=14% Similarity=0.002 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.|++++|...+++..+ .+...|..+...+...|++++|+..|++..+ +.|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568999999998865 3677888888899999999999999999999 67875 4677778889999999999999
Q ss_pred HHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 530 FYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 530 ~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
++...+ +.|+. ..+..+...+...|++++|.+.+++.- ..|+ +..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999875 45543 223334445677899999999988762 2354 4456677777788999999999999998888
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.+......|+..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888988998888 477776666554
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=1e-07 Score=103.70 Aligned_cols=191 Identities=20% Similarity=0.246 Sum_probs=143.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChh-
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKT-----VGIKPDDI- 508 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~pd~~- 508 (778)
.+..+|...+++++|..+|+++.. + -..+++.|...|...|++++|...+++..+ .|..+..+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 466788888888888888887743 1 134677777888889988888777776543 23333332
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-------C--CC
Q 004024 509 -TMVGILSACSHTGLVEKGTEYFYSMNRDYG--VIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM-------P--FE 572 (778)
Q Consensus 509 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~--~~ 572 (778)
-++.+...|.+.+.+++|..++....+.+. ..++ ..+|+.|..+|-..|+++||++++++. . ..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 366777789999999999999987766544 2222 467999999999999999999999877 1 12
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 573 PD-AATWGALLGACRLYGKTELAEKAAEVIFE----MEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 573 p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~----l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+. ....+-|..+|...++.+.|.++|+.... ..|+++ .+|..|+-+|...|++++|.++-....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 44677888999889999999999988765 345554 467889999999999999999866553
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5e-06 Score=84.69 Aligned_cols=267 Identities=11% Similarity=0.011 Sum_probs=184.9
Q ss_pred cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhH---HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchH
Q 004024 337 CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAI---IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVL 413 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 413 (778)
+.|+....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|+.+.--.+...+.... +-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 67888899999999999999999999998776665544443 223566788887777777665421 01111111111
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--C-CChhHHHHHHHHHHHcCChHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV--D-KDVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~ 490 (778)
...-...+.+.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|...+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 22234456666666666665543 2223333222345566799999999998764 3 378899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHH-HHH-hccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 491 ALMLFESMKTVGIKPDDITMVGIL-SAC-SHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~ll-~a~-~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
|+.+-+..... +..+..+...+. ..| -....-++|.+++++-. .+.|+ ...-+.+..++.+.|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99888776552 222333443331 222 23344678888887654 55675 4445667788889999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 568 NM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 568 ~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+. ...||....+.|....+..+.+..|...|..++.++|++-
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 76 5678999999999999999999999999999999999983
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=5.3e-06 Score=88.38 Aligned_cols=120 Identities=9% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCC-eeehhhHHHHHH--hcCChhHHHHHHHHHhhcCcccCcccc--cchHHHh
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHD-CISWAAIIAGYA--QSGYSEDSLRLFIEMKRYGERLNRSPF--TSVLSTC 416 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~~--~~g~~~~Al~l~~~m~~~g~~pd~~t~--~~ll~a~ 416 (778)
.-++|+.+|. +..+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .|+.... ...+...
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence 3455666664 44566666666666533 223333333322 222455666665554432 2332211 2222334
Q ss_pred cccccHHHHHHHHH--------HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 417 ANLASLELGKQLHG--------QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 417 ~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
...|+++.|.+++. .+.+.+.. +.+..+++.+|.+.++-+.|..++++.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 56677777777776 33333333 334456777777777777777777654
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=1.1e-06 Score=89.45 Aligned_cols=250 Identities=15% Similarity=0.153 Sum_probs=184.9
Q ss_pred cCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
.|++..|.++..+-.+.+-.|- ..|.....|.-..|+.+.+..+..++.+..-+++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4667777777666555443321 233334445556777777777777777764466777777788888888999988887
Q ss_pred HHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 464 FEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-------ITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
.++..+ ++.........+|.+.|++.+.+.+..+|.+.|+--|+ .++.+++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 776543 67788888899999999999999999999998866553 46888888888888887777777776
Q ss_pred hhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 534 NRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 534 ~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.. ...-++..-.+++.-|.++|..++|.+++++. +-.-|+. -..+-.|..-+|.+.-++.+++.+...|++|..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 55 33445666778888899999999999988766 3222333 2223455667788888888888888889888888
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|+.+|.+.+.|.+|.+.++...+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 89999999999999998888865553
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=2.8e-07 Score=87.04 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=125.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDL 552 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 552 (778)
...+.-+|.+.|+...|.+-+++.++ ..|+. .++..+...|...|..+.|.+.|+... .+.| +-+..|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 33455667777777777777777776 55654 366666667777777777777777665 3445 45566777777
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
|+..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...+++.....|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8888899999999888733333 558888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 004024 629 SKVRLKMRDRGV 640 (778)
Q Consensus 629 ~~~~~~m~~~g~ 640 (778)
...++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887664
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=6.6e-07 Score=93.40 Aligned_cols=226 Identities=12% Similarity=-0.008 Sum_probs=149.8
Q ss_pred CChhHHHHHHHHHhhcC-cccCc--ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYG-ERLNR--SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g-~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
+..+.++.-+.++.... ..|+. ..|...-..+...|..++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555666666655432 11221 123333444556677777777776666654 456788899999999999999999
Q ss_pred HHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 462 HAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 462 ~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
..|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+.......+..+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99999865 3 467888899999999999999999999988 677654322223334567889999999976543 2
Q ss_pred CCCChHHHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-C
Q 004024 539 VIPNSKHYTCMVDLLGRAGRL--DEAQNLMKNM-P----FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-A 609 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~--~eA~~~~~~m-~----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-~ 609 (778)
..|+... ..++..+ .|++ +++.+.+.+- . ..| ...+|..|...+...|+.+.|+..++++++++|.+ .
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 3444 3333333321 1 122 24589999999999999999999999999999754 3
Q ss_pred chHHHHHHH
Q 004024 610 GMYVLLSNL 618 (778)
Q Consensus 610 ~~y~~L~~~ 618 (778)
..-..+..+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.80 E-value=3.9e-07 Score=99.27 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=140.8
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.+...|...+++++|..+|+++...- ....-...+.-..+++.|...|.+.|
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~----------------------------e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR----------------------------EEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH----------------------------HHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 45566777888888888888776420 00000001112334455666788888
Q ss_pred CHHHHHHHHHhccC----------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCh----hHHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD----------KDVI-SWNTMIAGYARHGFGKDALMLFESMKTV---GIKPDD----ITMVGILSAC 517 (778)
Q Consensus 456 ~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~---g~~pd~----~t~~~ll~a~ 517 (778)
++++|...+++..+ +.+. -.+.++..|...+++++|..++++..+. -..++. -++..+...+
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 88888777776532 2333 3566777788889999999998876442 133444 3688888899
Q ss_pred hccCcHHHHHHHHHHchhhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDY-----GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--------PFEPD-AATWGALL 582 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~~~Ll 582 (778)
-+.|.+++|.++|+++.+.. +..+ ...+++-|...|.+.++.++|.++|.+. |-.|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999876542 2222 2456788888999999999898888765 34556 45899999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~ 603 (778)
..|+..|++|.|+++.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998874
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=3e-06 Score=94.97 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=172.1
Q ss_pred cccHHHHHHHHHHh----cC----ChhHHHHHhhhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc
Q 004024 339 NVASWNTMITGYAQ----SG----EITHARNLFDRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS 407 (778)
Q Consensus 339 ~~~~~~~Li~~y~k----~g----~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 407 (778)
+..+|..|+.-|.+ +| +...|...+.+.. ..+...||+|--. ...|.+.-|.--|-+-... .+-+..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchh
Confidence 34555555544433 22 2235666666543 3566778877655 5556666666555544432 233556
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-----c---CCChhHHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI-----V---DKDVISWNTMI 479 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-----~---~~d~~~~~~li 479 (778)
+|..+--.|....+++.|.+.+..+.... +.+..-+--..-.-...|+.-++..+|..- . .++..-|-.-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 77777777788888888888888776543 233333322222234567777777777652 1 14566666655
Q ss_pred HHHHHcCChHHHHHHHHHHHH---------CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 480 AGYARHGFGKDALMLFESMKT---------VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
.-..++|+.++-+...++.-. .|..-+...|.......-|.+...++.+...+...-...+-+...|+...
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 566677776654444333221 12333456777777778888888887777666543223334555666443
Q ss_pred ----HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH---HHHhhhcC
Q 004024 551 ----DLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL---SNLYAASG 623 (778)
Q Consensus 551 ----~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L---~~~y~~~g 623 (778)
.++...|.++.|..-+...+.+-|..+-++-++. ...|+++.+...+++++.+--.+...-+++ +.....+|
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcc
Confidence 3444467788777777666666666555555544 456789999999999998765554433333 33444566
Q ss_pred CcchHHHHHHHH
Q 004024 624 RWGDVSKVRLKM 635 (778)
Q Consensus 624 ~~~~a~~~~~~m 635 (778)
.-+.|....-..
T Consensus 1090 ~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1090 QKNDAQFLLFEV 1101 (1238)
T ss_pred cchHHHHHHHHH
Confidence 666776654333
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.3e-07 Score=90.27 Aligned_cols=228 Identities=13% Similarity=0.082 Sum_probs=149.3
Q ss_pred hhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004024 375 AAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC 454 (778)
Q Consensus 375 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 454 (778)
+.|..+|.+.|.+.+|.+.|+.-...- |-..||.-+-.+|.+..+.+.|..++..-.+. ++-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 567888999999999999888877654 33345555555666666666666655554443 233444444444555555
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
++.++|.++++...+ .++.+...+..+|.-.|+++-|+..++++.+.|+. +..-|..+.-.|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 556666666555543 23344444455555555666666666666555543 33344555555555555555444444
Q ss_pred HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 532 SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 532 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
..... | -.|+ ..+|-.|......-||+..|.+.++-.+.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 33221 1 1344 45788888888888999999999999999999999
Q ss_pred chHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 610 GMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 610 ~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..|+.|+-+-.+.|+.++|..++...++..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999888753
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00014 Score=80.21 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=137.7
Q ss_pred HhhcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCC-------------CCcchHHHHHHHHHcCC
Q 004024 71 HMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ-------------RDLVSWNVMISGYVRNK 137 (778)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------~~~~~~~~li~~~~~~g 137 (778)
|..-|..+.|.+..+.+ .+..+|..|.++|.+.++++-|.-.+..|.. ++ ..-......-...|
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 45556666665433332 3456788999999998888888877777752 21 11111222234568
Q ss_pred ChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccC-CcchHHHHHHHHHhcCCHHHHHHHHHhcccCC-
Q 004024 138 SLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEK-NEISWNGLLAAYVQNGRIEEACMLFESKANWE- 215 (778)
Q Consensus 138 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~- 215 (778)
.+++|..+|++..+-| .|=..|-..|.+++|.++-+.--+- =..||..-..-+-..++.+.|++.|++.-.+-
T Consensus 815 MlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 8888888888776543 3455677788888888876643211 12356666666667778888888877543221
Q ss_pred ----------------------ccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhC
Q 004024 216 ----------------------VVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEA 273 (778)
Q Consensus 216 ----------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m 273 (778)
...|.--....-..|+.+.|+.++... .-|-+++...|-.|+.++|-++-++-
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHHHHhc
Confidence 111222222223456666666666542 23555666666666666666665553
Q ss_pred CCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 274 PVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 274 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
. |.....-|...|-..|++.+|+.+|-+. .+|...|+.|-.
T Consensus 965 g--d~AAcYhlaR~YEn~g~v~~Av~FfTrA-----qafsnAIRlcKE 1005 (1416)
T KOG3617|consen 965 G--DKAACYHLARMYENDGDVVKAVKFFTRA-----QAFSNAIRLCKE 1005 (1416)
T ss_pred c--cHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 2 4555566777777777777777777665 345555554433
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.9e-06 Score=81.20 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHH-HHHHHHh
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT-CMVDLLG 554 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-~lv~~l~ 554 (778)
.+|.+.+.-.-++++.+-.++....- +.-|.+.-..+..|.+..|...+|.++|-.+... .++ |..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHH
Confidence 34455555555566666666655543 2233333334566777777777777777665421 222 334444 3456788
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 555 RAGRLDEAQNLMKNMPFEPDAATWG-ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 555 r~g~~~eA~~~~~~m~~~p~~~~~~-~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+.|+++-|.+++-++.-..+..+.- .+..-|.+.+.+--|-++|..+..++|.. ..+ .|+...-..++.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~ 509 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFR 509 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHH
Confidence 8899999999888886344444443 44478999999988999999888888753 211 233334445555
Q ss_pred HHHhCCCccCCc
Q 004024 634 KMRDRGVKKVTG 645 (778)
Q Consensus 634 ~m~~~g~~k~~g 645 (778)
.+.....++.|+
T Consensus 510 ~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 510 QLANHKTDPIPI 521 (557)
T ss_pred HHHcCCCCCCch
Confidence 555444444444
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=1.5e-05 Score=87.63 Aligned_cols=405 Identities=12% Similarity=0.077 Sum_probs=246.7
Q ss_pred CccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----CCeehHHHHHHH
Q 004024 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV----KDVFTWTAMVSG 287 (778)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~ 287 (778)
+...|..|.-+...+|+++.+.+.|++.. -.....|+.+...|..+|.-..|..+++.-.. |+..+--.|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 45567777778888888888888888776 23456788888888888888888888876542 333333333332
Q ss_pred -HH-hcCChHHHHHHHHhCCCC--------CcchHHHHHHHHhcc----C-------ChHHHHHHHHhhc---cccccHH
Q 004024 288 -YV-QNGKVDEARMIFDAMPEK--------NTVSWNAMIAGYVQT----K-------RMDMARELFEAMT---CKNVASW 343 (778)
Q Consensus 288 -~~-~~g~~~~A~~l~~~m~~~--------~~~t~~~ll~~~~~~----~-------~~~~a~~i~~~~~---~~~~~~~ 343 (778)
|. +.|..++++++-.+.... ....+..+.-+|... . ...++.+.++..+ +.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33 236667776666555431 344444444444322 1 1235556666665 4555555
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCC----CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccC-cccccchHHHhcc
Q 004024 344 NTMITGYAQSGEITHARNLFDRMP----QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN-RSPFTSVLSTCAN 418 (778)
Q Consensus 344 ~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 418 (778)
.-|.--|+..++++.|.+...+.. ..+...|.-+.-.+...+++.+|+.+.+....+- |+ ..-...-+..-..
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhh
Confidence 556667888888888887776643 3466788888888888889999988887765531 11 1111111111111
Q ss_pred cccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChh-HHHHHHHHHHHcCChHHH
Q 004024 419 LASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVI-SWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~-~~~~li~~~~~~g~~~~A 491 (778)
.++.+++......+...-- .+. ....|+-....+.+..+.- .|.+ ++..+ .+..+ -+.+.+
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~ 627 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSA 627 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhc
Confidence 3333333332222211000 000 0011112223333333311 1222 22222 22222 111111
Q ss_pred HHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 492 LMLFESMKTVGIKPDDI--------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
..-.. |...-+.|... .+......+...+..++++..+.+..+ +.| ....|......+...|.++||
T Consensus 628 ~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 628 GSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred ccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 10000 22222333221 244555677888999999888877753 344 455666677888899999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK--AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~--~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+.|... .+.|+ +.+..+|...+...|+...|+. +...+++++|.++..+..|+.++-+.|+.++|.+.|...-+
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9988766 67887 5588889899999999999988 99999999999999999999999999999999999987765
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00016 Score=74.13 Aligned_cols=401 Identities=13% Similarity=0.068 Sum_probs=214.3
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehH-HHHHHHHHhcC-ChHHHHHHHHhCCCCCcchHHHHHHHHhcc-
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTW-TAMVSGYVQNG-KVDEARMIFDAMPEKNTVSWNAMIAGYVQT- 322 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~- 322 (778)
|...-.-++..|-..++-+.|.....+.+..-...- |.|+.-+-+.| +-.++.--+......-+.....+. +..+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~-~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE-ALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH-HHHHHh
Confidence 445556788889899999999999988886544334 44444444333 222222222222222222211111 11111
Q ss_pred -CChHHHHHHHHhhc-cccccHHHHHHHHHHhc--CChhHHHHHhhhCC-----CCCeeehhhHHHHHHhcCChhHHHHH
Q 004024 323 -KRMDMARELFEAMT-CKNVASWNTMITGYAQS--GEITHARNLFDRMP-----QHDCISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 323 -~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~Al~l 393 (778)
...+.+--....+. +++......-+.+|+.+ ++-..|...|-.+. ..|+....++...+...|+.++|...
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 11111111111111 33333444445555554 33334444433322 23556677888888889999999999
Q ss_pred HHHHhhcCcccCcccccchH-HHhcccccHHHHHHHHHHHHHcC-CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004024 394 FIEMKRYGERLNRSPFTSVL-STCANLASLELGKQLHGQLVKVG-FEAG-CFVGNALLVMYCKCGSVEEAYHAFEEIVDK 470 (778)
Q Consensus 394 ~~~m~~~g~~pd~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g-~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 470 (778)
|.+.+. +.|+.++-.-+- -.....|+.+....+..++.... .... .++..+ ..-...+++.|..+-++..+-
T Consensus 255 Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~---~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 255 FSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ---LLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh---hhhhhhhHHHHHHHHHHHhcc
Confidence 988765 334433211110 11234455555555544443221 1111 111111 112234566666666655543
Q ss_pred Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH
Q 004024 471 DVI---SWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 471 d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
|.. .+-.=...+.+.|+.++|.-.|+..+. +.| +-..|.+++..|...|.+.||.-.-+...+. +.-+..+.
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~L 405 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSL 405 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhh
Confidence 332 232223455666777777777777666 555 3456777777777777777776555444332 11233333
Q ss_pred HHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 547 TCMV-DLLGR-AGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 547 ~~lv-~~l~r-~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
+.+. +.+.- .---++|.+++++. .++|+ ....+.+..-|...|..+.+..++++.+...|++ ..++.|+.++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 3331 22221 12245677777655 56666 3355556666777777777777777777777765 6677777777777
Q ss_pred CCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 623 GRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
..+.+|.+.+..... ..|+.+.-.+-|+.|+++++
T Consensus 485 Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence 777777777665443 46777777888888888776
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=2.9e-05 Score=77.36 Aligned_cols=204 Identities=13% Similarity=0.149 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcchHHHHH---HHHhccCChHHHHHHHHhhc--cccccHH-HHHHHHHHhcCChhH
Q 004024 285 VSGYVQNGKVDEARMIFDAMPEKNTVSWNAMI---AGYVQTKRMDMARELFEAMT--CKNVASW-NTMITGYAQSGEITH 358 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll---~~~~~~~~~~~a~~i~~~~~--~~~~~~~-~~Li~~y~k~g~~~~ 358 (778)
...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|..-+..++ .||-... -.-...+.|.|.++.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 33444445555555555555444443333332 24444555555555555554 2221110 111234567777777
Q ss_pred HHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCC
Q 004024 359 ARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFE 438 (778)
Q Consensus 359 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 438 (778)
|..=|+.+.+.++. -+....++.+.-..++-..+. ..+......|+...+......+++.. +
T Consensus 125 A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~----------------~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 125 AEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLV----------------QQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHH----------------HHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 77777776553321 011111111111111111111 12222334456666666666665543 6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhc---cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEI---VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.|...+..-.+.|.+.|++..|+.-++.. ...+....--+-..+-.-|+.+.++...++-.+ +.||.-
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 78888888889999999999998766654 445666777777788889999999999998888 788864
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.7e-05 Score=75.11 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHH-HHHHHcCChHHHHHH
Q 004024 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMI-AGYARHGFGKDALML 494 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li-~~~~~~g~~~~Al~l 494 (778)
.-+++...-....+...-...|.+.+| +..+++..|...+|+++|-.+.. +|-.+|-+|+ .+|.++++++-|.++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555555555544444445555554 67778888888888888877755 4566676654 567788888888777
Q ss_pred HHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHchhhcCCCCChHHHH
Q 004024 495 FESMKTVGIKPDDITMVGIL-SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT 547 (778)
Q Consensus 495 ~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 547 (778)
+-++. ...+..+...++ .-|.+.+.+--|-+.|+.+. ...|+++.|.
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnWe 498 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENWE 498 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccccC
Confidence 65543 222444444443 46888888888888887775 4567766653
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=0.00012 Score=80.67 Aligned_cols=394 Identities=16% Similarity=0.174 Sum_probs=206.0
Q ss_pred CCCcchHHHHHH--HHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc------------cCCc
Q 004024 120 QRDLVSWNVMIS--GYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML------------EKNE 185 (778)
Q Consensus 120 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~~d~ 185 (778)
.-|..+-.++++ .|..-|+.+.|.+-..-+. .-.+|..|.++|.+..+++-|.-.+..|. +.+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 345666666664 3566677777766555443 34567777777777777777766666664 1111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCC-ChhHHHHHHHHHhcCCCHH
Q 004024 186 ISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVR-DEVSWNTMITGYAQNNYLA 264 (778)
Q Consensus 186 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~y~~~g~~~ 264 (778)
.+-.-+.-.....|.+++|+.++++-.+.| .|=..|-..|.+++|.++-+.-..- =..||..-..-+-..++.+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 222222333456777888888887766543 3445666777888777775532110 1124444444455566777
Q ss_pred HHHHHHhhCCCC-----------------------CeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 265 EAQRLFEEAPVK-----------------------DVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 265 ~A~~~f~~m~~~-----------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
.|.+.|++...+ |...|.-....+-..|+.+.|+.+|.... -|.++++..|-
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCI 950 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEee
Confidence 777777654322 22233333333344455666665555432 24455555555
Q ss_pred cCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcC
Q 004024 322 TKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYG 401 (778)
Q Consensus 322 ~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 401 (778)
.|+.++|-++-++- .|......|..+|-..|++.+|...|-+.. ++..-|..+-.++ .++-+.-+.-|-
T Consensus 951 qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd-~~d~L~nlal~s--- 1019 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKEND-MKDRLANLALMS--- 1019 (1416)
T ss_pred ccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcC-HHHHHHHHHhhc---
Confidence 66666665554442 344445556666666666666666665442 1222222222211 111111111110
Q ss_pred cccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------
Q 004024 402 ERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD------------ 469 (778)
Q Consensus 402 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------------ 469 (778)
...++-.+-.++ .+.|... .--+..|-|.|.+.+|+++-=+-.+
T Consensus 1020 ----------------~~~d~v~aArYy---Ee~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1020 ----------------GGSDLVSAARYY---EELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred ----------------CchhHHHHHHHH---HHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 111111222222 2222111 1234467888888888765322211
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----h
Q 004024 470 --KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----S 543 (778)
Q Consensus 470 --~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 543 (778)
.|+...+--..-+..+.++++|..++-...+ |...+..|...|. .-..++-+.|.....-.|+ .
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccHHHHH
Confidence 3555555556667778888888888766554 4455555554432 2223333344322222333 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
.....+.+.+.+.|.+..|-+-|.+.+
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 345566677888888888877776664
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.58 E-value=2.6e-05 Score=85.78 Aligned_cols=415 Identities=13% Similarity=0.082 Sum_probs=254.0
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChhHHHHHHhhCCC----C-ChhHHHHH
Q 004024 182 EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLGDAKWIFDRMPV----R-DEVSWNTM 253 (778)
Q Consensus 182 ~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-d~~~~~~l 253 (778)
+.|...|-.+.-+....|+++.+-+.|++....- ...|+.+...|..+|.-..|..+++.-.. | |+..+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3467778888888899999999999999887653 35799999999999999999999987652 2 22222222
Q ss_pred HHHHh-cCCCHHHHHHHHhhCCC--------CCeehHHHHHHHHHhc-----------CChHHHHHHHHhCCCC---Ccc
Q 004024 254 ITGYA-QNNYLAEAQRLFEEAPV--------KDVFTWTAMVSGYVQN-----------GKVDEARMIFDAMPEK---NTV 310 (778)
Q Consensus 254 i~~y~-~~g~~~~A~~~f~~m~~--------~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~---~~~ 310 (778)
-..|. +.+.++++...-.+... .....+-.+.-+|... ....++++.+++..+. |..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22232 33455554443333221 1334455555454332 1235667777777542 555
Q ss_pred hHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHh
Q 004024 311 SWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQ 383 (778)
Q Consensus 311 t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~ 383 (778)
...-+.--|+..++++.|.+...+.. ..+...|.-|.-.+.-.+++.+|+.+.+...+. |.+.-..-|..-..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 54455556778889999999988877 567788999999999999999999998865432 21111112222233
Q ss_pred cCChhHHHHHHHHHhhc--CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHH
Q 004024 384 SGYSEDSLRLFIEMKRY--GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVG---NALLVMYCKCGSVE 458 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~---~~Li~~y~k~g~~~ 458 (778)
-++.++|+.....|..- ...|=..|. . .|....-+.-...... .....+.++ .+++..=.+.-..+
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhcccc
Confidence 67888888887777541 000000000 0 0000000000000000 000011111 12222111111111
Q ss_pred HHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHH
Q 004024 459 EAYHAFEEIVDKD------VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 459 ~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
.....+...+.|+ ...|......+...++.++|...+.+... +.|-. ..|......+...|..++|.+.|.
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 2222222222333 23466666777888888888877777665 44533 234444455667788899998887
Q ss_pred HchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 532 SMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQN--LMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 532 ~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
... -+.|+ +..-.++..+|.+.|+..-|.. ++..+ .+.|+ ...|-.|.....+.|+.+.|...|.-+.++++
T Consensus 709 ~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 765 56674 6677888899999998766666 77766 56775 77999999999999999999999999999998
Q ss_pred CCCc
Q 004024 607 ENAG 610 (778)
Q Consensus 607 ~~~~ 610 (778)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 8764
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.1e-05 Score=81.14 Aligned_cols=209 Identities=14% Similarity=0.113 Sum_probs=131.5
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVI----------SWNTMIAGYA 483 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----------~~~~li~~~~ 483 (778)
++.-+..+++.+.+-+...+... .++.-++.....|...|...+....-+...+..-. +..-+..+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444445555666555555544 45555566666677777766665555444332211 1122334566
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~e 561 (778)
..++++.|+..|.+....-..||..+ +....+++....+... -+.|.. +--.+ ..-+-+.|++.+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gdy~~ 376 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGDYPE 376 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccCHHH
Confidence 67788888888888766555555332 2223344443333321 223322 11112 455667888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|...+.++ ...| |+..|.....++.+.|++..|..-++..++++|+....|..=+-++....+|++|.+.+..-.+
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888776 3455 4667888888888888888888888888888888888888888888888888888888876655
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=3.4e-05 Score=83.27 Aligned_cols=295 Identities=11% Similarity=-0.043 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC---CCeee---hhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccc---
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ---HDCIS---WAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTS--- 411 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~---~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~--- 411 (778)
.+..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++.... .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 344455555556666665555544322 12111 112233456678888888888877664 24333 2211
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~ 488 (778)
........+....+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 11111123344444444333 1111122334445566778889999999999998755 3456778888889999999
Q ss_pred HHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-H--HHHHHHhhcCC----
Q 004024 489 KDALMLFESMKTVGI-KPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-T--CMVDLLGRAGR---- 558 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~lv~~l~r~g~---- 558 (778)
++|+.++++.....- .|+. ..+..+...+...|+.++|..+++.........+..... + .+...+...|.
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998876321 1222 134456677888999999999998875321211222111 1 22333333442
Q ss_pred --HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C--------CCCchHHHHHHHhhhcCCcc
Q 004024 559 --LDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEME-P--------ENAGMYVLLSNLYAASGRWG 626 (778)
Q Consensus 559 --~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~-p--------~~~~~y~~L~~~y~~~g~~~ 626 (778)
++++....... +.............++...|+.+.|...++.+.... + .......+.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 22222222111 111112223355666778889999999998876532 1 13456678888999999999
Q ss_pred hHHHHHHHHHhCC
Q 004024 627 DVSKVRLKMRDRG 639 (778)
Q Consensus 627 ~a~~~~~~m~~~g 639 (778)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766543
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.3e-06 Score=84.46 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=138.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CCcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCCh
Q 004024 282 TAMVSGYVQNGKVDEARMIFDAMPE--KNTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 282 ~~li~~~~~~g~~~~A~~l~~~m~~--~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~ 356 (778)
+.|...|.+.|.+.+|.+.|+.-++ +-+.||..+-++|.+..+.+.|..++.+.. +.|+.....+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 5677788888888888888877654 367788888888888888888888888777 55555556667777778888
Q ss_pred hHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHH
Q 004024 357 THARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLV 433 (778)
Q Consensus 357 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 433 (778)
++|.++++...+ .++.+..++..+|.-.++++-|+..|+++.+.|+. +..-|..+--.|.-.++++.+.--+.+..
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 888888887654 35566667777888888888888888888887753 23334444444555555555555555544
Q ss_pred HcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 434 KVGFEAG--CFVGNALLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 434 ~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..--.|+ ..+|-.|.......|++..|.+.|+-.... +..++|.|.-.-.+.|+.++|..+++....
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3322221 223333444444455555555555544332 233455555545555555555555555444
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=6.7e-06 Score=84.72 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc---
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH--- 519 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~--- 519 (778)
+......+|...|++++|.+++.+. .+.......+..|.+.++.+.|.+.++.|.+ +..|. +...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHh
Confidence 3333445677788888888877765 4555556667788888888888888888876 34443 33333333221
Q ss_pred -cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 520 -TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 520 -~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
...+.+|..+|+++... ..+++.+.+.+..+....|++++|+..+
T Consensus 179 g~e~~~~A~y~f~El~~~----------------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK----------------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC----------------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc----------------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 12344444444444332 2344555555555555666666666666
Q ss_pred HHHHhcCCCCCchHHHHHHHhhhcCCc-chHHHHHHHHHh
Q 004024 599 EVIFEMEPENAGMYVLLSNLYAASGRW-GDVSKVRLKMRD 637 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~~~y~~~g~~-~~a~~~~~~m~~ 637 (778)
+.+++.+|+++.+...++-+....|+. +.+.+.+..+++
T Consensus 225 ~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 225 EEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666666666666666 334455555554
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=0.00033 Score=75.96 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=89.3
Q ss_pred CChhHHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH
Q 004024 470 KDVISWNT--MIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 470 ~d~~~~~~--li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
|....|+. ++..|-..|+++.|+.+.+..+. -.|+.+ -|..-...+.|.|++++|..++++..+- -.||...=
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHH
Confidence 55566765 56677888999999999999887 678765 4555667899999999999999988642 23455444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHHcCChHHHHHHHHHHH
Q 004024 547 TCMVDLLGRAGRLDEAQNLMKNMPFEP-D--------AATWGALL--GACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 547 ~~lv~~l~r~g~~~eA~~~~~~m~~~p-~--------~~~~~~Ll--~a~~~~g~~~~a~~~~~~~~ 602 (778)
+--+.-..|+.+.++|.++.....-+- + ...|--+= .++.+.|++.+|.+-+..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 455666779999999999876552111 1 22454443 56677777766665554433
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.49 E-value=7.9e-05 Score=82.52 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc------------------CCChhHH--HHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV------------------DKDVISW--NTMIAGYA 483 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------~~d~~~~--~~li~~~~ 483 (778)
.+..+.....+.|+| .+++.|-..|....+.+-..+++.... .|....| .-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 344444555556643 244555556665444444444444431 1333345 44566788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e 561 (778)
..|+.++|+++.++.++ ..|+.+ .|..-...+-|.|++++|.+.++.... +.+ |-..=+-.+..+.|+|+.++
T Consensus 206 ~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999998 678855 677778899999999999999998763 344 44555567788899999999
Q ss_pred HHHHHHhCC---CCCC------HHHH--HHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 562 AQNLMKNMP---FEPD------AATW--GALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 562 A~~~~~~m~---~~p~------~~~~--~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|.+.+.... ..|- ..+| .....+|.+.|++..|.+-+..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999887662 1221 2255 3446788999999999988887765
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.49 E-value=3.3e-05 Score=73.34 Aligned_cols=197 Identities=14% Similarity=0.097 Sum_probs=141.2
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.+.-+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D------------------------------------Ps~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD------------------------------------PSYYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHHcC
Confidence 34456666666666666666665532 445566777888888888
Q ss_pred CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 456 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
..+.|.+-|++... .+-...|....-+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|.++|.
T Consensus 84 e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 84 ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 88888888887644 4556677777778888888888888888876432222 3477777777778888888888888
Q ss_pred HchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 532 SMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 532 ~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...+ +.| .......|.+.....|++-+|..+++.. ...++..+.--.+..-+..||.+.+-+.-.++..+-|..
T Consensus 164 raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7764 233 3455667888888889999998888776 234666665556666677888888888888888888877
Q ss_pred Cch
Q 004024 609 AGM 611 (778)
Q Consensus 609 ~~~ 611 (778)
...
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 543
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=0.00013 Score=82.41 Aligned_cols=292 Identities=12% Similarity=0.014 Sum_probs=139.2
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCccc-CcccccchH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERL-NRSPFTSVL 413 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 413 (778)
.+...||+|.-. ..-|.+.-|...|-+-. .....+|..+-..+.++.+.+-|...|...+.- .| |...+....
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEA 891 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHH
Confidence 344555555444 44455555555554332 234456666666666666666666666655542 22 222222222
Q ss_pred HHhcccccHHHHHHHHHH--H--HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------C-ChhHHH
Q 004024 414 STCANLASLELGKQLHGQ--L--VKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD------------K-DVISWN 476 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~--~--~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------------~-d~~~~~ 476 (778)
..-...|+.-....++.. . .+.|-.++...+-+-.......|+.++-...-+++.. | +...|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 222233433334444333 1 1122223332222222223344554444333333321 1 344566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTV-GIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR 555 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 555 (778)
+.....-+.+.+++|.++..+.+.- ..+-|..+|+.+. ...|++.-+..-|+......+..|-..-=..+.-.++-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak---~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l 1048 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK---PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL 1048 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH
Confidence 6666666667777777777665421 0233444444321 22233333333333333333443322211122222222
Q ss_pred --cCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 556 --AGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 556 --~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.|+++++.+.|++. .-+.| ++....++..-...+..+.|....=+..++.|.+.+....|.-+|.-..+-..-
T Consensus 1049 Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~s 1128 (1238)
T KOG1127|consen 1049 FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGS 1128 (1238)
T ss_pred HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhh
Confidence 57778888888776 12334 334455555556667777777777777777777777777776666555444443
Q ss_pred HHHHHHH
Q 004024 629 SKVRLKM 635 (778)
Q Consensus 629 ~~~~~~m 635 (778)
.-+.+.+
T Consensus 1129 saileel 1135 (1238)
T KOG1127|consen 1129 SAILEEL 1135 (1238)
T ss_pred HHHHHHH
Confidence 3333333
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.003 Score=71.65 Aligned_cols=191 Identities=14% Similarity=0.183 Sum_probs=119.9
Q ss_pred CChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHH
Q 004024 354 GEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLV 433 (778)
Q Consensus 354 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 433 (778)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++.-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444444333 47999999999999999999887543 356678999999999999999999888888
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh--------------------------hHHHHHHHHHHHcCC
Q 004024 434 KVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV--------------------------ISWNTMIAGYARHGF 487 (778)
Q Consensus 434 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~--------------------------~~~~~li~~~~~~g~ 487 (778)
+..-+|. +-+.||-+|+|.+++.+-++... -||+ .-|..|...+...|+
T Consensus 1161 kk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1161 KKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7765555 45679999999999888766543 2333 334444445555555
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 488 GKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+..|.+.-++. .+.-||--+-.||...+.+.-|. |.. ..+.-..+-..-++..|...|.++|-..+++
T Consensus 1236 yQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1236 YQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555444332 12335555555665554443331 111 1222234445556666666677766666665
Q ss_pred hC
Q 004024 568 NM 569 (778)
Q Consensus 568 ~m 569 (778)
..
T Consensus 1304 a~ 1305 (1666)
T KOG0985|consen 1304 AG 1305 (1666)
T ss_pred hh
Confidence 54
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.3e-06 Score=89.97 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=149.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh------
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI------ 508 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~------ 508 (778)
+.+...|--|...-...++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.++.-+.. +|-.+
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~--~p~y~~l~~a~ 393 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN--KPKYVHLVSAG 393 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CccchhccccC
Confidence 33455555555556666666677777777655 35666777778888889889999998887652 22111
Q ss_pred ---HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004024 509 ---TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLG 583 (778)
Q Consensus 509 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~ 583 (778)
.+..- ....+........++|-.+....+..+|++.+.+|.-+|--.|.+++|.+-|+.. ..+|+ ..+||-|..
T Consensus 394 ~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 394 ENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred ccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 00000 1223334455667778887777677788889999999999999999999999987 67785 779999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 584 ACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 584 a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
.+......++|+.+|.++++|.|.-..+-..|+-.|...|.++||.+.+-...
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999865543
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.6e-07 Score=60.95 Aligned_cols=34 Identities=38% Similarity=0.673 Sum_probs=28.6
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004024 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV 468 (778)
Q Consensus 435 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 468 (778)
.|+.||..+||+||++|+|.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=0.0002 Score=77.22 Aligned_cols=165 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHH-H
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDV--ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITM-V 511 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~--~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~-~ 511 (778)
...+..+...|...|++++|...+++... ++. ..|..+...+...|+.++|+.++++.......++ .... .
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 34445556666666666666666665533 111 2344556666667777777777776643211011 1111 1
Q ss_pred --HHHHHHhccCcHHHHHHH--HHHchhhcCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC---C------H
Q 004024 512 --GILSACSHTGLVEKGTEY--FYSMNRDYGV-IPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEP---D------A 575 (778)
Q Consensus 512 --~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p---~------~ 575 (778)
.++.-....|..+.+.+. .........- ......-...+.++...|+.++|..+++.+. .+. . .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 222223333332222222 1111110000 0011111235556677788888888776651 111 1 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
.+.-...-++...||.+.|.+.+..++++-
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111122234557788888888888777653
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=0.00058 Score=74.11 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=93.6
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhhCC--C-CCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHH
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAP--V-KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAG 318 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~ 318 (778)
.+.+.|..+.-.+-...++++|.+.|.... + .|...|.-+.-.-++.|+++.....-....+. ....|....-+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345667766666666677777777776543 2 24455655555555666666555554444432 44556666666
Q ss_pred HhccCChHHHHHHHHhhc-----cccccHHHHH------HHHHHhcCChhHHHHHhhhCCCC--C-eeehhhHHHHHHhc
Q 004024 319 YVQTKRMDMARELFEAMT-----CKNVASWNTM------ITGYAQSGEITHARNLFDRMPQH--D-CISWAAIIAGYAQS 384 (778)
Q Consensus 319 ~~~~~~~~~a~~i~~~~~-----~~~~~~~~~L------i~~y~k~g~~~~A~~~f~~m~~~--d-~~~~~~li~~~~~~ 384 (778)
.--.|+...|..+.++.. .++...+.-. .....+.|..++|.+.+...... | ...--+...-+.+.
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence 666677777776666655 1233222221 12345566667766666544321 1 11223344556677
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++.++|..+++.++.. .||.+-|.-.+.
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 7777777777777664 366555544433
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=1.9e-05 Score=79.69 Aligned_cols=179 Identities=15% Similarity=0.020 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----H
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD-V---ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI----T 509 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~----t 509 (778)
....+-.+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 445556666777778888888888877654 22 1 3566677777778888888888888776 445432 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHchhhcCCCCChHH-HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 510 MVGILSACSHT--------GLVEKGTEYFYSMNRDYGVIPNSKH-YTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 510 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
+..+..++... |+.++|.+.|+.+... .|+... +..+. +.+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 33333344433 5667777777766643 233211 11111 111111100 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.++++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567788999999999999999877654 68899999999999999999998887764
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=4.9e-07 Score=59.63 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.38 E-value=0.00021 Score=87.51 Aligned_cols=352 Identities=14% Similarity=0.044 Sum_probs=210.7
Q ss_pred HHHhcCChHHHHHHHHhCCCCCcc--hHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHH
Q 004024 287 GYVQNGKVDEARMIFDAMPEKNTV--SWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 287 ~~~~~g~~~~A~~l~~~m~~~~~~--t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
.+...|++.+|+..+......+.. ............|+++........+. ..+..........+...|++++|.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 345556666665555444332111 11111223344566776666666553 233444445556667788888888
Q ss_pred HHhhhCCC----CC---e---e--ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc----ccccchHHHhcccccHHH
Q 004024 361 NLFDRMPQ----HD---C---I--SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR----SPFTSVLSTCANLASLEL 424 (778)
Q Consensus 361 ~~f~~m~~----~d---~---~--~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~ 424 (778)
..++...+ .+ . . ....+...+...|++++|...+++....-...+. .....+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 87765421 11 1 1 1111223456788999999999887653111111 122233334566889999
Q ss_pred HHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------CC----hhHHHHHHHHHHHcCCh
Q 004024 425 GKQLHGQLVKV----GF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-------KD----VISWNTMIAGYARHGFG 488 (778)
Q Consensus 425 a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~d----~~~~~~li~~~~~~g~~ 488 (778)
+...+...... |- .........+...+...|++++|...+++... ++ ...+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 98888777543 21 11123445567778889999999998876533 11 22344455566777999
Q ss_pred HHHHHHHHHHHHCC--CCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-----HHHHHHHhhcCCH
Q 004024 489 KDALMLFESMKTVG--IKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-----TCMVDLLGRAGRL 559 (778)
Q Consensus 489 ~~Al~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~ 559 (778)
++|...+.+..... ..|. ..++..+.......|+.++|.+.+...............+ ......+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99999998876531 1222 2234445556778899999999888875421111111111 1122445568999
Q ss_pred HHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHhhhcCCcch
Q 004024 560 DEAQNLMKNMPF-E-PDA----ATWGALLGACRLYGKTELAEKAAEVIFEMEP------ENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 560 ~eA~~~~~~m~~-~-p~~----~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p------~~~~~y~~L~~~y~~~g~~~~ 627 (778)
++|.+.+..... . ... ..+..+..++...|+.+.|...++++++... .....+..++.+|...|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999877621 1 111 1244566777888999999999999887532 123467788999999999999
Q ss_pred HHHHHHHHHhC
Q 004024 628 VSKVRLKMRDR 638 (778)
Q Consensus 628 a~~~~~~m~~~ 638 (778)
|.+.+....+.
T Consensus 750 A~~~L~~Al~l 760 (903)
T PRK04841 750 AQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHH
Confidence 99988777653
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.37 E-value=1.5e-05 Score=82.09 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=95.4
Q ss_pred HHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHH
Q 004024 348 TGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQ 427 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 427 (778)
.+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.+ .| .+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~----------------- 167 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILT----------------- 167 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHH-----------------
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHH-----------------
Confidence 4556667777777766654 233344455666777777777777777776532 11 1111
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 004024 428 LHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504 (778)
Q Consensus 428 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 504 (778)
.+..+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..++.+.|++++|.+++.+..+ ..
T Consensus 168 --------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~ 231 (290)
T PF04733_consen 168 --------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KD 231 (290)
T ss_dssp --------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-
T ss_pred --------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hc
Confidence 1233445555444567888888888755 4566777788888888888888888888665 44
Q ss_pred CC-hhHHHHHHHHHhccCcH-HHHHHHHHHchhh
Q 004024 505 PD-DITMVGILSACSHTGLV-EKGTEYFYSMNRD 536 (778)
Q Consensus 505 pd-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 536 (778)
|+ ..|+..++....+.|.. +.+.+++..+...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 44677777777888877 6677788887754
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.0029 Score=67.57 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLV 523 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~ 523 (778)
+...|.+.++.+.|...|.+... ++.... .+....++++...+...- +.|+.. -.-.-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34467777888888888877543 221111 122334555555554443 444432 122224566778888
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDA-ATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
..|...+.++++. -+-|...|..-.-.|.+.|.+.+|++=-+.. ...|+. -.|.-=..++..-.+++.|...+++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887754 1335777888888888888888777655444 345553 34544455566667899999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
++++|++......+...+.....-+...++
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 999999988888887777664333333333
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=1.2e-05 Score=73.96 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004024 493 MLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-P 570 (778)
Q Consensus 493 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 570 (778)
.+|++..+ +.|+. +.....++...|++++|...|..... +.| +...|..+..++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 45554 33445566667777777777776653 334 5666777788888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 571 FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 571 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..| ++..|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 46788888888888999999999999999999999888888777654
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.32 E-value=7.8e-05 Score=82.58 Aligned_cols=257 Identities=9% Similarity=0.056 Sum_probs=134.1
Q ss_pred HHHHHhcCChhHHHHHhhhCCC--CCeeeh-hhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcc-----
Q 004024 347 ITGYAQSGEITHARNLFDRMPQ--HDCISW-AAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN----- 418 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m~~--~d~~~~-~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----- 418 (778)
...+...|++++|++.++.-.. .|..+| ......|.+.|+.++|..+|+.+...+ ||...|-..+..|..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888876543 344444 445566778888888888888888754 676666555544431
Q ss_pred -cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 419 -LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 419 -~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
....+.-.+++..+...- |.......+.-.+..-..+ -..+...+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~ 136 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRP 136 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence 112333344444332221 1100000010000000011 1123333344
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhc-------------CCCCChH--HHHHHHHHHhhcCCHHHH
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY-------------GVIPNSK--HYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~y~~lv~~l~r~g~~~eA 562 (778)
+...|+++ +|+.|-.-|......+-..+++....... .-.|+.. ++..+...|-+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44445432 33333333333333333333333222110 1123332 233445666677777777
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
++++++. ...|. +..|..-...+...|+++.|....+.+.++++.|--.-.-.+..+.++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 7777654 44555 335556666666777777777777777777777755556666666777777777777666655444
No 107
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=8e-05 Score=77.79 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChhHHHHHHH
Q 004024 443 VGNALLVMYCKCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG--KDALMLFESMKTVGIKP-DDITMVGILS 515 (778)
Q Consensus 443 ~~~~Li~~y~k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~--~~Al~l~~~m~~~g~~p-d~~t~~~ll~ 515 (778)
+++-.-..+.+.| .+++++..++++.+ ++..+|+--...+.+.|.. ++++++++++.+ ..| |..+|.....
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3333333444555 46777777776654 4555676555555555553 567777777776 455 4456777777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHh-CCCCCC-HHHHHHHHHHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA---GR----LDEAQNLMKN-MPFEPD-AATWGALLGACR 586 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~---g~----~~eA~~~~~~-m~~~p~-~~~~~~Ll~a~~ 586 (778)
++.+.|++++++++++.+.+. . .-+...|+....++.+. |. .+++.++..+ +...|+ ...|+.+.+.+.
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 777778888888888877753 1 11344454444444333 22 3466677644 355664 779999999988
Q ss_pred HcC----ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 587 LYG----KTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 587 ~~g----~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.++ +...+...+..+++.+|+++.++..|+.+|+..
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 229 DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 743 446688889999999999999999999999864
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=5.4e-05 Score=88.12 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=167.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK--------DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 509 (778)
+.+...|-..|......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+ ..--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 556677777788888899999999999987541 245799999999999999999999999987 3333456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPDAATWGALLGAC 585 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~ 585 (778)
|..|+..|...+..++|-++++.|.++++ -....|...++.+.+...-+.|.+++++. |-+-......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999888 45677999999999999999999998776 3222344445555556
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.++||.++|+.+|+-++.-.|.-...|..++++-.+.|..+.+..+|++.-..++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999988765
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0027 Score=67.67 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA-GCFVGNALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~ 465 (778)
.+.....++++...-..--..+|...++.--+..-++.|+.+|..+.+.+..+ +++++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443222223456667777777778888888888888877666 7888888888777 467788888888
Q ss_pred hccC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcC--
Q 004024 466 EIVD--KDV-ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYG-- 538 (778)
Q Consensus 466 ~m~~--~d~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 538 (778)
--.. +|. .--+..+.-+..-|+-..|..+|++....++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6544 333 33355566667778888888888888877666664 3677777777777777777777666665554
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA 562 (778)
..|...+-..+++.|+-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 454444555566666655544433
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=0.0015 Score=80.07 Aligned_cols=355 Identities=9% Similarity=0.012 Sum_probs=218.6
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCCCeeh--HHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHH
Q 004024 254 ITGYAQNNYLAEAQRLFEEAPVKDVFT--WTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDM 327 (778)
Q Consensus 254 i~~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~ 327 (778)
...|...|++.+|..........+... ...........|+++.+...+..+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344566777777777666655442211 11122234556778777777777632 133333444455567788888
Q ss_pred HHHHHHhhc----cc----cc----cHHHHHHHHHHhcCChhHHHHHhhhCCC----CCe----eehhhHHHHHHhcCCh
Q 004024 328 ARELFEAMT----CK----NV----ASWNTMITGYAQSGEITHARNLFDRMPQ----HDC----ISWAAIIAGYAQSGYS 387 (778)
Q Consensus 328 a~~i~~~~~----~~----~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~~~~g~~ 387 (778)
+...+..+. .. +. .....+...+...|++++|...+++..+ .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888877664 11 11 1122234556778999999888887532 221 2345555667788999
Q ss_pred hHHHHHHHHHhhcCcccC-----cccccchHHHhcccccHHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcC
Q 004024 388 EDSLRLFIEMKRYGERLN-----RSPFTSVLSTCANLASLELGKQLHGQLVKV----GFEA---GCFVGNALLVMYCKCG 455 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~Li~~y~k~g 455 (778)
++|...+.+.....-... ..++..+...+...|+++.|...+...... +... ...++..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988765321111 123334445567789999999888776542 3211 2334555666777889
Q ss_pred CHHHHHHHHHhccC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhHHH-----HHHHHHhccC
Q 004024 456 SVEEAYHAFEEIVD------K--DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDDITMV-----GILSACSHTG 521 (778)
Q Consensus 456 ~~~~A~~~f~~m~~------~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~-----~ll~a~~~~g 521 (778)
++++|...+++... + ....+..+...+...|+.++|.+.+++.....-. .....+. ..+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999998887633 1 1234445666788899999999999888552111 1111111 1123445578
Q ss_pred cHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCh
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWGALLGACRLYGKT 591 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~Ll~a~~~~g~~ 591 (778)
..+.+.+++........-.+. ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999988775431111110 111345667788899999999888765 22222 23566667888899999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 004024 592 ELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~ 608 (778)
+.|...+.+++++....
T Consensus 748 ~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 748 SEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999986543
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=2.2e-05 Score=71.10 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+.+..-.+...+...|++++|.++|+-. -+.|. ..-|-.|...|...|+++.|..++.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445666778899999999999887 45664 668999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 620 AASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
...|+.+.|.+-|+...... + .+|+-.+|.++-+.....|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999998766521 1 46777777776666555554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=8e-05 Score=72.44 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=92.2
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HHcCC--hHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGAC-RLYGK--TELA 594 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~-~~~g~--~~~a 594 (778)
.+..+++...+....+. -..+.+.|..+...|...|++++|.+.+++. ...|+ ..+|..+..+. ...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666555432 2336778888888888999999999988877 45564 66777777764 56676 5899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..+++++++++|+++.++..|+..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988764
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=9.3e-05 Score=79.19 Aligned_cols=211 Identities=16% Similarity=0.228 Sum_probs=143.4
Q ss_pred hccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCC---eeehhhHHHHHHhcCChhHHHHH
Q 004024 320 VQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHD---CISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 320 ~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l 393 (778)
.+.|++.+|.-.|+..+ +.+...|--|.......++=..|+..+.+..+-| ....-+|...|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34555666665565555 3445556666666666666666666666555433 33444555567777777777777
Q ss_pred HHHHhhcCcc--------cCcccccchHHHhcccccHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004024 394 FIEMKRYGER--------LNRSPFTSVLSTCANLASLELGKQLHGQL-VKVGFEAGCFVGNALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 394 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 464 (778)
|+.-.....+ ++..+-.. ........+....++|-.+ ...+...|+.+...|.-.|--.|+++.|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766443210 11111100 2223334445555555444 55565688888999999999999999999999
Q ss_pred HhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 465 EEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 465 ~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+.... | |...||-|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.++|-+..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 98865 3 788999999999999999999999999999 899976 34456668999999999998886643
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=5.2e-05 Score=69.70 Aligned_cols=98 Identities=11% Similarity=-0.057 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+.|+ ++......+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 4566788899999999999999887 4556 5779999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 004024 617 NLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+|...|+.++|.+.++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999887664
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.17 E-value=0.00013 Score=73.66 Aligned_cols=179 Identities=14% Similarity=0.094 Sum_probs=124.7
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh---HHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFE-A-GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD-VI---SWNTMI 479 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~---~~~~li 479 (778)
.+......+...|+++.|...+..+.+..-. + ....+..+...|.+.|++++|...|+++.+ |+ .. +|..+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 4555566778899999999999998775421 1 124567788999999999999999999865 32 22 455566
Q ss_pred HHHHHc--------CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 480 AGYARH--------GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 480 ~~~~~~--------g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.++.+. |+.++|++.|+++.. ..|+..-....+.... .... .. ......+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~---~~~~------~~---------~~~~~~~a~ 174 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD---YLRN------RL---------AGKELYVAR 174 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH---HHHH------HH---------HHHHHHHHH
Confidence 666654 788999999999988 5676532211111110 0000 00 011235667
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 552 LLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.|.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|...++.+...-|
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 889999999999988776 43343 56889999999999999999998888776555
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0011 Score=65.15 Aligned_cols=398 Identities=12% Similarity=0.049 Sum_probs=216.2
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCeehHH-HHHHHHHhcC
Q 004024 219 WNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDVFTWT-AMVSGYVQNG 292 (778)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~-~li~~~~~~g 292 (778)
+++.+..+.+..++++|.+++..-. +++....+.|...|-...++..|-..++++.. |...-|. --...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 3444444555556666666554443 23445566777777788888888888877653 2222221 1234456678
Q ss_pred ChHHHHHHHHhCCCC-CcchHHHHHH--HHhccCChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHHHhhhCCC
Q 004024 293 KVDEARMIFDAMPEK-NTVSWNAMIA--GYVQTKRMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARNLFDRMPQ 368 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~-~~~t~~~ll~--~~~~~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 368 (778)
.+.+|+.+...|... +...-..-+. .....+++..++.+.++.. +.+..+.+...-...+.|+.+.|.+-|....+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 888888888888764 2111111122 2234677777777777776 45566666666667788899999988887764
Q ss_pred ----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc----ccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 369 ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP----FTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 369 ----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
...+.||.-+. ..+.|+...|+++..++.+.|++--... -+-.++ ...+..-..+|...+
T Consensus 173 vsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal------- 240 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSAL------- 240 (459)
T ss_pred hcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHH-------
Confidence 23456665544 4466888999999999888876532110 000111 000011111111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
+..+|.-...+-+.|+.+.|.+.+-.|+. -|++|...|.-.- ..|++-+..+-+.-+.+ +.| ...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHH
Confidence 11222233456788999999999999975 3788876654322 23444444444444444 345 356999999
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG-RAGRLDEAQNLMKNMPFEPD--AATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~-r~g~~~eA~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~ 591 (778)
-.|++...++-|-.++.+-..-.---.+...|+ |++.+. -.-..++|++-+....-.-. ......-+.-- ++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~-r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA-RHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 999999999988887754211000001223333 233333 23456666655544310000 00000000111 12222
Q ss_pred HHH----HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 592 ELA----EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 592 ~~a----~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+++ .+-++..+|+- -.....-+++|-...++.-+.++|..-.
T Consensus 396 d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 222 22223333321 1234455777888888888888876543
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=3.9e-06 Score=56.02 Aligned_cols=35 Identities=40% Similarity=0.692 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD 507 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 507 (778)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=5.8e-05 Score=82.70 Aligned_cols=215 Identities=15% Similarity=0.086 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccc
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 420 (778)
..-..+...+.++|-...|..+|+++. .|.-.|-.|...|+..+|..+.++-.+ -
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k------------------ 453 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--K------------------ 453 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--C------------------
Confidence 344566778888888888888888763 477778888888888888777776655 2
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+|+...|..|.|....-.-++.|.++++....+--.+|+-.+ .+.++++++.+.|+.-.+
T Consensus 454 -----------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~ 513 (777)
T KOG1128|consen 454 -----------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLE 513 (777)
T ss_pred -----------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhh
Confidence 334444444444444444455555555544332111222111 124566666666665444
Q ss_pred CCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHH
Q 004024 501 VGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAA 576 (778)
Q Consensus 501 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~ 576 (778)
+.|= ..||-....+..+.++++.+.+.|.... ...| +.+.||.+-.+|.+.|+..+|...+++. ... -+.-
T Consensus 514 --~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 514 --INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred --cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 3332 2244444444445555555555554433 2233 2344444444555555555554444443 111 1223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
+|....-....-|+.+.|.+++.++.++.
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 45444444445555555555555555543
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.00015 Score=79.49 Aligned_cols=188 Identities=19% Similarity=0.134 Sum_probs=124.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS 515 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 515 (778)
+++|-...--.+.+.+.++|-..+|..+|++. ..|--.|..|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45677777778889999999999999999874 4677788999999999999998888777 5788888988888
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTEL 593 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~ 593 (778)
..-....+++|+++++..... .-..+.....+.++++++.+.++.. .+.|- ..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888888888888765432 0001111222345555555555432 33342 3455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|.++|...+.++|++...++.|+-.|...|+-.+|...+++..+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 666666556666666555666665565555555555555554443
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00023 Score=69.78 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 526 (778)
.-|.|+.+.|.+-|+...+ ...+.||.-+ +.-+.|++..|+++..+.++.|++-.+.. ..|.+-++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~teg 223 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEG 223 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------Cccceecc
Confidence 4467777777777777655 3445666544 34456888888888888888886532210 01221121
Q ss_pred HHHHHHchhhcCCCCChHHHHHH-------HHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHH
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCM-------VDLLGRAGRLDEAQNLMKNMP----FEPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~l-------v~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
..+ +.. -.|-.-|-+.+ ...+.+.|+.+.|.+-+..|| -+.|++|...+.-. -..+++..+.
T Consensus 224 iDv-rsv-----gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 224 IDV-RSV-----GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred Cch-hcc-----cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccH
Confidence 110 000 01112222333 334567888999999888886 23467776554322 2345666777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+-+.-+++++|-.+.++-.|.-+|++..-++-|..+..
T Consensus 297 ~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 77778888888777888888888988888888887764
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.06 E-value=0.00023 Score=83.14 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=138.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc--------cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC-C-eeehhhH
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT--------CKNVASWNTMITGYAQSGEITHARNLFDRMPQH-D-CISWAAI 377 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d-~~~~~~l 377 (778)
....|...+.-....++++.|+.+.+++. +.-..+|.+++++-.--|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556666666666666666666666665 112345666666666666666667777766542 2 2456666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCC
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~ 456 (778)
...|.+.+..++|-++|+.|.+. +.-....|...+..+.+...-+.|+.++.++++.-- ...+.+..-.+.+-.|+|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 67777777777777777777653 233444555666666666666667777666665421 1245556667788889999
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 457 VEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 457 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.+.++.+|+.... +-...|+..|..-.+||+.+.+..+|++....++.|-..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 9999999998865 356789999999999999999999999999998888643
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=5.1e-06 Score=55.42 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=33.0
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.00082 Score=70.97 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL-SACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCM 549 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 549 (778)
...|.-..-.+...|+.++|+..++.++. -.||..-|..+. ..+...|++++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 33444444555667888888888888877 567666555443 466778888888888887764 3554 3444556
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
.++|.+.|++++|...++.. ..+-|+..|..|..+|...||..++..+. +..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 77888888888888888776 23346788999999999988877766544 456778899999
Q ss_pred HHHHHHHHHhCC
Q 004024 628 VSKVRLKMRDRG 639 (778)
Q Consensus 628 a~~~~~~m~~~g 639 (778)
|.......+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 998888877754
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00033 Score=68.15 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=106.1
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGA 580 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 580 (778)
..|+.......-.++.-.|+-+.+..+.......++ -+.+.....+....+.|++.+|...+++. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456443335555677777777777777665433211 23444555888899999999999999988 44567889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+.-+|-+.|+.+.|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988776543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.00 E-value=0.00046 Score=67.10 Aligned_cols=155 Identities=8% Similarity=0.103 Sum_probs=112.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+ ..|+ ...|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777655544332221 011225666778877877777 4554 45677777788888999999
Q ss_pred HHHHHHchhhcCCCC-ChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 527 TEYFYSMNRDYGVIP-NSKHYTCMVDLL-GRAGR--LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|..++...|+++.|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 988887764 445 577777888764 67777 58999999887 45664 67888888999999999999999999
Q ss_pred HHhcCCCCCchHHHH
Q 004024 601 IFEMEPENAGMYVLL 615 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L 615 (778)
+++++|.+..-+-.+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998876555443
No 126
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.98 E-value=0.0028 Score=63.67 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=168.0
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHH---HHHHhcCChHHHHHHHHhCCCCCcchHHHH---HHHHhccCChH
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV---SGYVQNGKVDEARMIFDAMPEKNTVSWNAM---IAGYVQTKRMD 326 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~t~~~l---l~~~~~~~~~~ 326 (778)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++.-+..+.+- ...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444455556666666666666655555555543 345556666666655555544322112111 22455667777
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
.|..-|+.++..++.- +....++.+.--+++-+.+. .++..+.-+|+...|++....+.+ +.|-.
T Consensus 124 ~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~------------~ql~s~~~~GD~~~ai~~i~~llE--i~~Wd 188 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLV------------QQLKSASGSGDCQNAIEMITHLLE--IQPWD 188 (504)
T ss_pred HHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHH------------HHHHHHhcCCchhhHHHHHHHHHh--cCcch
Confidence 7777776666222210 11112222222222221111 122333445555555555555544 22322
Q ss_pred cc-ccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 004024 407 SP-FTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYA 483 (778)
Q Consensus 407 ~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~ 483 (778)
.. +..=..++...|.+..|..-...+.+..-+ ++...--+-..|-+.|+.+.++...++..+ ||--.. |.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C------f~ 261 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC------FP 261 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH------HH
Confidence 22 222223344455555554444444443322 333333455667778888888888887765 332211 11
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCC
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGR 558 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~ 558 (778)
.-....+..+.++.|.+. ...+.+.++.+-.+...+ ..|. ...+..+-..+...|+
T Consensus 262 ~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCC
Confidence 112223333333333321 112222222222222221 1222 1122334445566778
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 559 LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 559 ~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+-+|++.-.+. .+.|| +.++.--..|+..-..++.|+.-++++.+++|+|..+-.-+ +.|.++.+...
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkqs~ 392 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHhc
Confidence 88887776655 56666 55777677777778889999999999999999885443322 44555555444
Q ss_pred hCCCccCCc
Q 004024 637 DRGVKKVTG 645 (778)
Q Consensus 637 ~~g~~k~~g 645 (778)
++..-|+-|
T Consensus 393 kRDYYKILG 401 (504)
T KOG0624|consen 393 KRDYYKILG 401 (504)
T ss_pred cchHHHHhh
Confidence 444444444
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.00039 Score=80.04 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=139.1
Q ss_pred cccchHH-HhcccccHH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---C---CChhHHHHHH
Q 004024 408 PFTSVLS-TCANLASLE-LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV---D---KDVISWNTMI 479 (778)
Q Consensus 408 t~~~ll~-a~~~~~~~~-~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~---~d~~~~~~li 479 (778)
|...++. +.+..|.-+ .|+++|.++.+ ++. +.|.+..+..-+-+.. . .++..+-.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La 93 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVLVA 93 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHHHH
Confidence 4444444 355666544 45677777643 233 3333333332222221 1 3577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG 557 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 557 (778)
....+.|..++|+.+++...+ +.||.. .+..+..++.+.+.+++|+...++... ..| +..+...+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhc
Confidence 889999999999999999999 899876 677888899999999999999998864 456 5677788889999999
Q ss_pred CHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 558 RLDEAQNLMKNMP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 558 ~~~eA~~~~~~m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
+.++|.++|++.- -.|+ +.+|.++..++...|+.+.|..+|+++++...+.+..|.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999882 3455 779999999999999999999999999998766555543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.00088 Score=77.95 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred chHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHH
Q 004024 411 SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 411 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 490 (778)
.+..+|.++|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+.. .-|...+++.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~ 187 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchH
Confidence 34444455555555555555555554 55666666667677766 7777766665532 22555566777
Q ss_pred HHHHHHHHHHCCCCCChh
Q 004024 491 ALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~ 508 (778)
+.+++.++.. ..|+.+
T Consensus 188 ~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 188 IEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHHHHHHh--cCcccc
Confidence 7777777766 455544
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00012 Score=66.55 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 539 VIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 539 ~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
..| +......+...+...|+.++|.+.++.. ...| +...|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445666777788888888888888776 4445 467888888888889999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 004024 616 SNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998876653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.00094 Score=76.97 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=118.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV- 511 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~- 511 (778)
.++.++..+--|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..||..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4566788888899999999999999999999866 5 456788899999999999999999999998 789877655
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLG 583 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~ 583 (778)
.+..++.+.|..++|..+|+.+... ..-+...+..+..++...|+.++|...|++. -..|..-.|+.+++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 4555778999999999999999862 2224778888999999999999999999887 23455555555543
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=1.9e-05 Score=52.28 Aligned_cols=34 Identities=38% Similarity=0.656 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888999999998888887
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00069 Score=65.98 Aligned_cols=152 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhcc
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHT 520 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~ 520 (778)
.-+-..|--.|+-+++..+...... .|....+..+....+.|++.+|+..|++... ..| |..+++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3344445555555555555555322 3444455566666666666666666666655 333 344555555566666
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE--PDAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~--p~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
|+.++|..-|.+..+-.+-+ ...++.|.-.|.-.|++++|..++...-.. .|..+-..|.-+-...|+++.|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555432222 233455555555556666666655554211 23445555555555556655555554
Q ss_pred HH
Q 004024 599 EV 600 (778)
Q Consensus 599 ~~ 600 (778)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.87 E-value=0.061 Score=57.75 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.+|-..+..-.+..-.+.|..+|.+..+.+..+-++ ...+++. +--+++.+-|.++|+.=.+.||-.| .--.+.+|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 357777777777777889999999999999888444 4444444 4457888999999998777666544 33457888
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHhhhc
Q 004024 552 LLGRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA----GMYVLLSNLYAAS 622 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~y~~L~~~y~~~ 622 (778)
-|.+.|+-.-|..+|++. .+.|| ..+|..+|.-=..-||+....++-++....-|.+. ..-.++...|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 899999999999999887 23455 46999999999999999999999998887655221 2234556677777
Q ss_pred CCcchHHHHHHHH
Q 004024 623 GRWGDVSKVRLKM 635 (778)
Q Consensus 623 g~~~~a~~~~~~m 635 (778)
+....-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 7776655555555
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.81 E-value=0.0014 Score=69.33 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
.....|..++|+..+..+.+. .| |+.-.....+++.++|+.++|.+.++++ ...|+ ...|-.+..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 455779999999999998753 45 5666667889999999999999999988 56777 778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|++.++....-+|+++..|..|+..|...|+..++..-+.++-.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00019 Score=76.54 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=95.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY 588 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~ 588 (778)
.+++..+...+++++|.++|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 45566666777788888888877654 244 3445777777778888888888776 2233 556666666778889
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
++.+.|..+++++.++.|++..++..|+.+|...|+|++|.-....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998888764
No 136
>PLN02789 farnesyltranstransferase
Probab=97.78 E-value=0.0028 Score=66.32 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=130.7
Q ss_pred HHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHG-FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGL- 522 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~- 522 (778)
..+.+.++.++|..+.+++.+. +..+|+.--..+...| +.++++..++++.+ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 3455567888999999888653 4556776666677777 67999999999998 45644 345544444555665
Q ss_pred -HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCh----
Q 004024 523 -VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY---GKT---- 591 (778)
Q Consensus 523 -~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~---g~~---- 591 (778)
.++...+++.+.+ +.| +...|+....++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3677888877764 345 5677888888888999999999999988 3344 577888877666554 222
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC----CcchHHHHHHH
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASG----RWGDVSKVRLK 634 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g----~~~~a~~~~~~ 634 (778)
+......+++++++|+|.+++.-+..+|...+ +..+|.+....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 46777778999999999999999999998743 33445555443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=2.9e-05 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=30.9
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCccc
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERL 404 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 404 (778)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.0019 Score=75.30 Aligned_cols=147 Identities=11% Similarity=0.153 Sum_probs=108.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
+...+..+..+|.+.|+.+++..++++++ +.|+.+.|.+...|+.. ++++|++++.+... .|...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~ 182 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKK 182 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhh
Confidence 44567778888888888888888888888 67788888888888888 88888888776533 37777
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
+++.++++++.++... .|+.+. .-.++.+.+... |+..-+.++-.|...|-+..+++++..+
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d---------------~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFD---------------FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhc--Ccccch---------------HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 8888999999888764 244332 223344444433 5555666777788889999999999999
Q ss_pred HHhccC---CChhHHHHHHHHHH
Q 004024 464 FEEIVD---KDVISWNTMIAGYA 483 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~ 483 (778)
|+.+.+ .|.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 998866 45566677777776
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.00099 Score=71.11 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSH 519 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 519 (778)
-.+-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++..+|++++++... ..|+. .....-...|..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 344456777778889999999999999887777777788889899999999999999987 45544 334444456788
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP 573 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 573 (778)
.++.+.|+++.+.+. ...|+ -.+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999887 45674 5689999999999999999999999998654
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.5e-05 Score=49.21 Aligned_cols=31 Identities=35% Similarity=0.779 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGI 503 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 503 (778)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.62 E-value=0.0013 Score=59.72 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004024 494 LFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF 571 (778)
Q Consensus 494 l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 571 (778)
++++... ..|+.. ....+...+...|+.++|.+.|+.+... -..+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 455443 3445555667777788887777776543 1225666777888888888888888888766 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 004024 572 EP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 572 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 46677788888889999999999999999999988553
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=6e-05 Score=48.59 Aligned_cols=31 Identities=32% Similarity=0.693 Sum_probs=25.9
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCc
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE 402 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 402 (778)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.16 Score=57.99 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCcc
Q 004024 577 TWGALLGACRLYGKT---ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKK 642 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~---~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k 642 (778)
+-+.|+..|++.+|. -+|+-++|..+...|.|..+-..|..+|.-.|-...|.++++.|.-+.|..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 456677888888765 356666677777888888888888899999999999998888887666543
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.045 Score=57.22 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 527 (778)
|.-+...|+...|.++-.+..-||-.-|-..|.+|+..|++++-.++... +-.++-|.-++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44456678889999998888888988999999999999999877665432 224588888899999999999998
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
.+...+. +.--+.+|.++|.+.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8887632 24567888899999988776544
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.00063 Score=72.81 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=50.6
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
+.+.|++++|+++++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455666666655554 33343 44555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 004024 631 VRLKMRD 637 (778)
Q Consensus 631 ~~~~m~~ 637 (778)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655443
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.00072 Score=67.13 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
-+|.+.|..+.|.+--+.. .+.|. .-+|..|..++...|++++|+++|+++++++|+|......|..+--+.
T Consensus 123 AAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 123 AAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 3444444444444433333 34555 347888888888888888888888888888888865555554443333
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.51 E-value=0.034 Score=57.18 Aligned_cols=206 Identities=21% Similarity=0.226 Sum_probs=143.8
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChh--HHHHHHHHHHH---c
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-----DKDVI--SWNTMIAGYAR---H 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~--~~~~li~~~~~---~ 485 (778)
.-+.|+.+.++++-+..-..- +.-.....++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-++ .
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 345677777777776664432 3345677889999999999999999998654 35543 23334443332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC-----H
Q 004024 486 GFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR-----L 559 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~-----~ 559 (778)
-+...|...-.+..+ +.||-+. -+.-..++.+.|++.+|-.+++.+.+ .+|.+......+ +.|.|+ +
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHH
Confidence 456667776666665 8888764 34455688999999999999999864 467776654433 445664 2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc-CCcchHHHHHH
Q 004024 560 DEAQNLMKNMPFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS-GRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g~~~~a~~~~~ 633 (778)
+.|..+ ++ ++|| ...--++..+-...|++..|...++.+..++|.. +.|.+|+++-... |+-.++.....
T Consensus 316 kRa~~L-~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 316 KRAKKL-ES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHH-Hh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 233222 23 4565 4566677788888999999999999999999988 8899999997655 77776665544
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.00073 Score=56.05 Aligned_cols=92 Identities=26% Similarity=0.334 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG 623 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g 623 (778)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++.++.|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777888888888888776 33443 4677777788888899999999999999999988888889999999999
Q ss_pred CcchHHHHHHHHHh
Q 004024 624 RWGDVSKVRLKMRD 637 (778)
Q Consensus 624 ~~~~a~~~~~~m~~ 637 (778)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888776654
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.016 Score=56.68 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=71.2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 429 HGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 429 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.+.+.......+......-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|++ + -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHH
Confidence 3444443334443333333446778888888888877743333333332 334455667788888888876 2 2445
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 509 TMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 509 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
|.+.+..++.. .+.+.+|.-+|++|..+ ..|+..+.+-+.-+....|+++||+.++++.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 66555555432 23455555566555542 3344444444444444455555555555444
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.018 Score=55.97 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMI---AGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG 521 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 521 (778)
.-+.-+..-+|+.+.|..+++.+..+=+-+...+. .-+-..|++++|+++++...+.. +.|.+++.--+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444556789999999999887552222222211 12445799999999999999865 346677877777777778
Q ss_pred cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC---ChHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYG---KTELAEK 596 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g---~~~~a~~ 596 (778)
.--+|++-+....+ .+..|.+.|.-+.++|...|.+++|.--++++ -+.|- +..+..|.......| |++.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 87788888887776 45568889999999999999999999888888 34553 445555655555444 8899999
Q ss_pred HHHHHHhcCCCCCc
Q 004024 597 AAEVIFEMEPENAG 610 (778)
Q Consensus 597 ~~~~~~~l~p~~~~ 610 (778)
.+++.+++.|.+..
T Consensus 213 yy~~alkl~~~~~r 226 (289)
T KOG3060|consen 213 YYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHhChHhHH
Confidence 99999999996543
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00013 Score=60.02 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 556 AGRLDEAQNLMKNM----PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 556 ~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2222455666677778888888888888887 777777767777778888888888888887
Q ss_pred HHH
Q 004024 632 RLK 634 (778)
Q Consensus 632 ~~~ 634 (778)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.003 Score=58.18 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 550 VDLLGRAGRLDEAQNLMKNMP-FEPDA----ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
...+...|++++|...++... ..||. ..+-.|...+...|+++.|...++.. .-.|-.+..+.+++++|...|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344445555555555554441 11221 22333444445555555555555431 1222233445566666666666
Q ss_pred cchHHHHHH
Q 004024 625 WGDVSKVRL 633 (778)
Q Consensus 625 ~~~a~~~~~ 633 (778)
+++|...++
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 666665554
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00035 Score=54.98 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC-CcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG-RWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g-~~~~a~~~~~~m~~ 637 (778)
++.+|..+...+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999988776543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0027 Score=55.93 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
+..+..++.+.|++++|.+.++.. ...|+ ..+|..+..++...|+.+.|...++++++..|+++...
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 344555566666666666665554 11222 34566666666677777777777777777777765433
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0018 Score=57.09 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHH
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVLL 615 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~L 615 (778)
..+-..+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++.+++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556777788899999999988877 22343 3466678888999999999999999999999886 4568899
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCC
Q 004024 616 SNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+.+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999887753
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.01 Score=66.42 Aligned_cols=139 Identities=17% Similarity=0.110 Sum_probs=72.5
Q ss_pred cCCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 468 VDKDVISWNTMIAGYARH--G---FGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 468 ~~~d~~~~~~li~~~~~~--g---~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
...|...|...+.|.... + ...+|+.+|++..+ ..||.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 335778888888775432 2 36789999999998 788853 222221111100 01111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM---P-FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
.. .+.++.+.+..++. + ...++.+|.++.-.....|+.+.|...++++++++| +...|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 01122222222221 1 122344555554444455666666666666666666 3456666666
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|...|+.++|.+.++....
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666555443
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.48 Score=52.50 Aligned_cols=369 Identities=12% Similarity=0.088 Sum_probs=188.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcccC-CccHhhHH----------HHHHHhcCChhHHHHHHhhCCCCChhHHH
Q 004024 183 KNEISWNGLLAAYVQNGRIEEACMLFESKANW-EVVSWNSL----------MGGFVKQKRLGDAKWIFDRMPVRDEVSWN 251 (778)
Q Consensus 183 ~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~d~~~~~ 251 (778)
|.+..|..+.......-.++-|...|-+.... |+....-| ...-+--|++++|++++-.|..+|.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh----
Confidence 44556666665555555555555555433221 21110000 0111224788888888887776664
Q ss_pred HHHHHHhcCCCHHHHHHHHhhCCCCC-----eehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChH
Q 004024 252 TMITGYAQNNYLAEAQRLFEEAPVKD-----VFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 252 ~li~~y~~~g~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~ 326 (778)
-|.++.+.|++-...++++.....+ ...|+.+...++....+++|.+.|..-... ...+.++.....++
T Consensus 766 -Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 766 -AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFG 839 (1189)
T ss_pred -hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhh
Confidence 3566777788777777776544221 246788888888888888888777664321 12344454444444
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
+-+.+. .-.+.|....-.+.+|+.+.|.-++|.+.|-+-..|. +-+..|...+++.+|.++-++.+. |..
T Consensus 840 ~LE~la-~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv 909 (1189)
T KOG2041|consen 840 ELEVLA-RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQV 909 (1189)
T ss_pred hHHHHH-HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhH
Confidence 433222 2225566677778888888888888888776665542 344556667777777776654432 111
Q ss_pred ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hHHHH-----H
Q 004024 407 SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV---ISWNT-----M 478 (778)
Q Consensus 407 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~-----l 478 (778)
.| ++.- .+-++. .+.. + .--|.++.|.|+.-+|-+++.+|.++.. +.+-- .
T Consensus 910 ~t---liak--------~aaqll---~~~~------~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYV 968 (1189)
T KOG2041|consen 910 QT---LIAK--------QAAQLL---ADAN------H-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYV 968 (1189)
T ss_pred HH---HHHH--------HHHHHH---hhcc------h-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHH
Confidence 11 1110 111111 1111 0 1136778888888788788777754211 11111 1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC
Q 004024 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR 558 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 558 (778)
+.++. ..+..++++-.++....|...|... +..+|..+++-++.+.... | ....|+-.|..--.+-|+
T Consensus 969 L~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 969 LGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred HHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhch
Confidence 11111 1223344444444444443333211 2233444444444443222 1 134555555555667888
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 559 LDEAQNLMKNM----PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 559 ~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
++.|+.---.. .+-|-..+|.-|.-+-+....+..--+++-++...
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 88887653332 23344555554432222223333333444444433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.21 E-value=0.0077 Score=57.28 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=89.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYT 547 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 547 (778)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..++...... .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777788888999999999998887433332 246667777788888888888888877643 34 345555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
.+..+|...|+...|..-.+.. ...++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6666777766665554332221 123577888999999999887 66666666666653
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.20 E-value=0.014 Score=53.61 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=41.5
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~ 591 (778)
..+...|++++|...|+..... .-.|.. ...-.|..++...|++++|+..++..+-.+ .+..+..+...+...|+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH
Confidence 3444445555555555554432 111111 122234455555666666666665543111 233445555566666666
Q ss_pred HHHHHHHHHH
Q 004024 592 ELAEKAAEVI 601 (778)
Q Consensus 592 ~~a~~~~~~~ 601 (778)
+.|...|+++
T Consensus 135 ~~A~~~y~~A 144 (145)
T PF09976_consen 135 DEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0018 Score=64.35 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=78.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
.+-+.+.+++++|++.+.+. .+.| |++.|..=..+|.+.|.++.|.+..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44566789999999999877 6666 577778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004024 628 VSKVRLKMRD 637 (778)
Q Consensus 628 a~~~~~~m~~ 637 (778)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999886554
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.015 Score=56.41 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHhccC--------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-HHhccCcH
Q 004024 454 CGSVEEAYHAFEEIVD--------KDVI-SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS-ACSHTGLV 523 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~--------~d~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~ 523 (778)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++++... + |.+.-...+=. -+-..|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3578888888888743 2222 2344455666789999999999998875 2 66543322222 23457899
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
++|.++++++..+- +-|..+|--=+-++-..|+--+|++-+.+. .+-.|...|.-|-..|...|+++.|...+|.+
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998752 335666766666777778877888877766 46678999999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcch---HHHHHHHHHh
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGD---VSKVRLKMRD 637 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~---a~~~~~~m~~ 637 (778)
+=+.|.++..+-.|+.++...|-.+. +.+++....+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888876443 4445544443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.00073 Score=52.39 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 582 LGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 582 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+...|+++.|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777777777766654
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.10 E-value=0.0036 Score=59.52 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
...|..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666667777778888888877765 22222 4578888888899999999999999999999999999999999
Q ss_pred HhhhcCC
Q 004024 618 LYAASGR 624 (778)
Q Consensus 618 ~y~~~g~ 624 (778)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988777
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0034 Score=59.52 Aligned_cols=93 Identities=12% Similarity=-0.101 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
....|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|...++++++++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666777788889999999988876 23333 358889999999999999999999999999999999999999
Q ss_pred HHhh-------hcCCcchHHHHHHH
Q 004024 617 NLYA-------ASGRWGDVSKVRLK 634 (778)
Q Consensus 617 ~~y~-------~~g~~~~a~~~~~~ 634 (778)
.+|. ..|++++|...++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998 77888766655543
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0034 Score=64.76 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=70.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-----DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-----~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
+-..+.|++.+|.+.+.+. .+.| ++-.|.....+....|+.+.|..-.+.+++++|.-..+|..-+++|...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999888776 4444 455566666677788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 004024 625 WGDVSKVRLKMRD 637 (778)
Q Consensus 625 ~~~a~~~~~~m~~ 637 (778)
|++|.+-++..-+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988776554
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0024 Score=63.95 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG---KTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g---~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
|.+.|-.|...|.+.|+.++|..-+.+. .+.| ++..+..+..++.... +..++..++++++.++|.|..+..+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7899999999999999999999999877 4444 4667777776665443 568999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCcee
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
-.+...|++.+|...++.|.+......|..+
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999987665555433
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.00091 Score=52.37 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|+++.|...++++++.+|+++.....|+.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888888888775544
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.048 Score=53.48 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=99.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH----Hhh
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL----LGR 555 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~----l~r 555 (778)
..|...|++++|++..+.... + +... .=.....+...++-|.+.++.|..- .+..+.+-|..+ ..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~~A--l~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EAAA--LNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HHHH--HHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhcc
Confidence 456777888888888776211 1 1111 1122344566778888888888642 233444444444 444
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH-HH
Q 004024 556 AGRLDEAQNLMKNMP--FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK-VR 632 (778)
Q Consensus 556 ~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~-~~ 632 (778)
.+...+|.-+|++|. ..|++.+.+-...+|...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++.+ ..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 567889999999883 667888888888888888999999999999999888888877777766677787766643 34
Q ss_pred HHHH
Q 004024 633 LKMR 636 (778)
Q Consensus 633 ~~m~ 636 (778)
..++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.06 E-value=0.00034 Score=46.05 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 598 AEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 598 ~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
++++++++|+++.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.02 E-value=0.0071 Score=55.33 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=75.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.-+-..|++++|+.+|+-. -..| +..-|..|...|...++++.|...+..+..++++||.++...+..|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345789999999999876 2233 4557889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.+....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999987765
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.02 E-value=0.0074 Score=64.65 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+++.|...++++++++|+++.....+..+..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666655 34453 5567777777788888888888888888888888777766665543
Q ss_pred hc
Q 004024 621 AS 622 (778)
Q Consensus 621 ~~ 622 (778)
..
T Consensus 116 kl 117 (356)
T PLN03088 116 KI 117 (356)
T ss_pred HH
Confidence 33
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.00 E-value=0.03 Score=53.01 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTC 548 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 548 (778)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++..... .| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566666666777777777777777766322221 135556666666777777777776665532 22 2334444
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 549 MVDLLG-------RAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 549 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+..++. +.|++++|... .+.|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 444444 33444443322 345677778888888865
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.75 Score=51.07 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHH--HHHcCChHHHHHHHHHHHH-CCCCCChhHHHHH
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAG--YARHGFGKDALMLFESMKT-VGIKPDDITMVGI 513 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~Al~l~~~m~~-~g~~pd~~t~~~l 513 (778)
|-+.++-++.+.. -+....|.-||-+ ....|..+.|++.--.+.. +.+-|....|..+
T Consensus 1003 ~~l~~~~ri~~n~-WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1003 GLLAEQSRILENT-WRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhHHHHHHhh-hhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 3344444444322 1334445544444 3456777777775444332 1144444444433
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.99 E-value=0.0022 Score=49.62 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=50.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+...+.+.|++++|.+.+++. ...|+ ...|..+..++...|+++.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 355677889999999999887 45575 66899999999999999999999999999999874
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.98 E-value=0.008 Score=62.04 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHH----HHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAG----YAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~----~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+|..++...-+.+.++.|+.+|.+..+....+|...+.. |...++.+.|..+|+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl------------------ 63 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL------------------ 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------------------
Confidence 3566667777777777777777777665444444433321 112333444555555443
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C----ChhHHHHHHHHHHHcCChHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K----DVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~----d~~~~~~li~~~~~~g~~~~ 490 (778)
+. ++.+...+...++++.+.|+.+.|+.+|++... + -...|...|.-=.+.|+.+.
T Consensus 64 -----------------k~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 64 -----------------KK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp -----------------HH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred -----------------HH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 33 366778888899999999999999999999866 2 33589999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHH
Q 004024 491 ALMLFESMKTVGIKPDDITMVGI 513 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~l 513 (778)
+.++.+++.+ .-|+.-++..+
T Consensus 126 v~~v~~R~~~--~~~~~~~~~~f 146 (280)
T PF05843_consen 126 VRKVEKRAEE--LFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHH--HTTTS-HHHHH
T ss_pred HHHHHHHHHH--HhhhhhHHHHH
Confidence 9999999988 56664444333
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.68 Score=49.05 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHH
Q 004024 561 EAQNLMKNMPFEPD----AATWGALLGA--CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 561 eA~~~~~~m~~~p~----~~~~~~Ll~a--~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
+-++++++.++.|- ...-|.|..| ...+|++.++.-...-+.+..| ++.+|.+++-......+++||..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34556677766553 3455555544 4679999999999999999999 889999999999999999999999874
Q ss_pred H
Q 004024 635 M 635 (778)
Q Consensus 635 m 635 (778)
+
T Consensus 521 L 521 (549)
T PF07079_consen 521 L 521 (549)
T ss_pred C
Confidence 3
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.89 E-value=0.011 Score=48.80 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
+|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|.++|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------------- 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE----------------- 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 355566667777777777777777766 33432 3344444444444555555555544432
Q ss_pred HhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 553 LGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
..| +..+|..+...+...|+.+.|...++++++..|
T Consensus 63 ------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 63 ------------------LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ------------------CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 122 223455555555556666666666666655554
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.80 E-value=0.0028 Score=50.37 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888877653
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.05 Score=53.02 Aligned_cols=182 Identities=12% Similarity=0.042 Sum_probs=116.5
Q ss_pred HHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCeee--------hhhHHHHHHhcCChhHHHHHHHHHhhc
Q 004024 331 LFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDCIS--------WAAIIAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 331 i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~--------~~~li~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
+|.++......-+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-.|.+.-.+.++.+..+.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 44444444455567777766665555555555554322 22222 345556666667777777888888776
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCh
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG-----FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~ 472 (778)
..+.+..-.+.+.+.-.+.|+.+.+...++.+.+.. +.....+.......|.-..++.+|...|++++. .|+
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 555555556666666677788888888888776643 233333444444456677888889999988866 355
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
+.-|.=.-+..-.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 5566555555667899999999999988 667665554443
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.72 E-value=0.76 Score=47.55 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----h-hHHHHHHHHHhccCcHHHHHHHHHHchhh-cCCCCC--hHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPD-----D-ITMVGILSACSHTGLVEKGTEYFYSMNRD-YGVIPN--SKH 545 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 545 (778)
+..+...+.+.|++++|+++|++....-...+ . ..|...+-.+...|+...|.+.|+..... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34456677888888888888888776433222 1 12333333555667777888777776532 122222 222
Q ss_pred HHHHHHHHh--hcCCHHHHHHHHHhCC
Q 004024 546 YTCMVDLLG--RAGRLDEAQNLMKNMP 570 (778)
Q Consensus 546 y~~lv~~l~--r~g~~~eA~~~~~~m~ 570 (778)
...|++++- ....+++|..-++.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 334444442 2345666776676663
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.70 E-value=0.04 Score=56.90 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA-CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
+|..++...-+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|..+|+...+.++- +...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 45666666666666666666666665422 1122233333332 23345566677777777765443 55667888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+|+.+....+.+++.+.-|++ .....+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHhh
Confidence 88899999999998876 22232 3599999999999999999999999999998885 33444555443
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.69 E-value=0.03 Score=51.71 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchH
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMY 612 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y 612 (778)
.+.|++.+--.|...+.+.|+..||...+++. ++.-|+...-.+..+...-++...+...++++.+-.|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44455554445555555555555555555444 23344444444445544555555555555555554443 33444
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHH
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
.+++..|+..|+..+|..-++...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Confidence 455555555555555554444433
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=1.7 Score=49.08 Aligned_cols=319 Identities=13% Similarity=0.123 Sum_probs=185.2
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhCCCCC---hhHHHHHHHHHhcCCC---HHHHHHHHhhCCC--CCeehHHHHHHHHHh
Q 004024 219 WNSLMGGFVKQKRLGDAKWIFDRMPVRD---EVSWNTMITGYAQNNY---LAEAQRLFEEAPV--KDVFTWTAMVSGYVQ 290 (778)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~ 290 (778)
-..+++-+...+.+..|.++-..+..|- ..++.....-+.+..+ -+-+..+=+++.. .+.++|..+..---+
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3567788888899999999988887554 4566666666666532 2334444445554 467889888888889
Q ss_pred cCChHHHHHHHHhCCCC--------CcchHHHHHHHHhccCChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHH
Q 004024 291 NGKVDEARMIFDAMPEK--------NTVSWNAMIAGYVQTKRMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~--------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~ 361 (778)
.|+.+-|..+++.=... +..-+...+.-+...|+.+...+++-++. ..+...+...+ .+...|..
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l------~~~p~a~~ 593 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL------RNQPLALS 593 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH------HhchhhhH
Confidence 99999999888654332 44456666777777888877777766655 11111111111 11222333
Q ss_pred HhhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHH--HHh----hcCcccCcccccchHHHhcccccHHHHHH-------
Q 004024 362 LFDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFI--EMK----RYGERLNRSPFTSVLSTCANLASLELGKQ------- 427 (778)
Q Consensus 362 ~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~--~m~----~~g~~pd~~t~~~ll~a~~~~~~~~~a~~------- 427 (778)
++.+.-. .|.. .+-+.| +.++-.+++.-|. ... ..|..|+ ....-++|++......+.+
T Consensus 594 lY~~~~r~~~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 594 LYRQFMRHQDRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHhhchh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 3332211 1110 011111 1122222222211 100 0122222 2223344444333221111
Q ss_pred ---HHHHHH-HcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004024 428 ---LHGQLV-KVGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVG 502 (778)
Q Consensus 428 ---i~~~~~-~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 502 (778)
+...+. +.|.. .|..+.. -+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-.++-+.+.
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~d-Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk--- 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHD-TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK--- 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHH-HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC---
Confidence 111111 12221 2222222 23345567899999999998888888888888899999999988777766543
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+ ++-|.-...+|.+.|+.+||.+|+..... +.-.+++|.+.|.+.+|.++--
T Consensus 743 --s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 --S-PIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --C-CCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 2 56677788899999999999999866531 1257888999999999887653
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.64 E-value=0.0048 Score=48.38 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYG-KTELAEKAAEVIFEMEP 606 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p 606 (778)
+...|..+...+.+.|++++|+..+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777888888888999998888776 45665 668899999999999 79999999999999998
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.60 E-value=0.0024 Score=49.89 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 555 RAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 555 r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
..|++++|+++++++ ...| +..++..+..++...|+++.|+..++++...+|+++..+.+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555544 2233 3445555555555555555555555555555555544444443
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.55 E-value=1.4 Score=46.83 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=70.6
Q ss_pred HhcCC-HHHHHHHHHhccC---CChhHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCChhHH----HHHHH-
Q 004024 452 CKCGS-VEEAYHAFEEIVD---KDVISWNTMI----AGYARH---GFGKDALMLFESMKTVGIKPDDITM----VGILS- 515 (778)
Q Consensus 452 ~k~g~-~~~A~~~f~~m~~---~d~~~~~~li----~~~~~~---g~~~~Al~l~~~m~~~g~~pd~~t~----~~ll~- 515 (778)
-+.|. -+.|.++++.+.+ -|...-|... .+|.+. ....+-+.+-+-..+.|+.|-.+.= +.+-.
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 6677777776644 3444444332 223221 1233444444445566777644332 22222
Q ss_pred -HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 516 -ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 516 -a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
-+-..|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.+.+.+.| |+..+|++
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 2345577776655443333 577888888888877788888888888888876 46666654
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.52 E-value=0.021 Score=54.51 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=74.2
Q ss_pred HHHHHhc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-------------
Q 004024 461 YHAFEEI--VDKDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHT------------- 520 (778)
Q Consensus 461 ~~~f~~m--~~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 520 (778)
...|+.. ..+|-.+|..+|..|.++ |+.+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 446777777777777643 66677777788888888888888888888766432
Q ss_pred ---CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 521 ---GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 521 ---g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
.+.+-|+++++.|.. +|+.||.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 345678999999975 59999999999999999988764
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.51 E-value=0.027 Score=60.59 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=86.4
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhH
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV--GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVIS 474 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~ 474 (778)
+.+...+.+..+++.|....+++.+..+.-..... ....-..+..++|..|.+.|..+.|..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455566666777777777777777776666554 2223344445788888888888888888776443 78888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT 520 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 520 (778)
+|.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777778877777777655
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.49 E-value=0.051 Score=60.93 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 591 TELAEKAAEVIFEM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 591 ~~~a~~~~~~~~~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.+.+.+.+++..++ +|.++..|..++-++...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34566666666664 77788889999999999999999999999887765
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.25 Score=52.15 Aligned_cols=159 Identities=22% Similarity=0.194 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---Chh----HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DVI----SWNTMIAGYAR---HGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~~----~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
|+-.|-...+++.-.++.+.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444588888888888888888652 211 11122334445 78889999999886666667777777666665
Q ss_pred Hh---------ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH----HHHHH---Hh----C-CCCC--
Q 004024 517 CS---------HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE----AQNLM---KN----M-PFEP-- 573 (778)
Q Consensus 517 ~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e----A~~~~---~~----m-~~~p-- 573 (778)
|- .....++|...|.+. |.+.|+..+--.++-++..+|...+ ..++- .. - ...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 42 123466777776643 4666665444444555555554222 22221 11 1 1223
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
|-..+.+++.++...||.+.|.+++++++.+.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44455799999999999999999999999998765
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.46 E-value=0.0079 Score=49.36 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=49.0
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 004024 485 HGFGKDALMLFESMKTVGI-KPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 562 (778)
.|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|.++++. . ...|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887322 11334444567777788888888888776 2 22232 23333446677777777777
Q ss_pred HHHHHh
Q 004024 563 QNLMKN 568 (778)
Q Consensus 563 ~~~~~~ 568 (778)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=0.58 Score=48.55 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=150.9
Q ss_pred hhhHHHHHHhc--CChhHHHHHHHHHhhcCcccCcccccchHHHhc--ccccHHHHHHHHHHHHHcCCCCchhHH--HHH
Q 004024 374 WAAIIAGYAQS--GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA--NLASLELGKQLHGQLVKVGFEAGCFVG--NAL 447 (778)
Q Consensus 374 ~~~li~~~~~~--g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~L 447 (778)
|.+|-.|+... |+...|-++-.+-.+ -+..|...+.-+|.+-+ -.|+.+.+++-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 44444444433 444444444333321 13345555555555543 246777777777776642 222211 223
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhH--HHHHHHHHhcc-
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDIT--MVGILSACSHT- 520 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t--~~~ll~a~~~~- 520 (778)
.----+.|..+.|+..-+..-. | =.-.|.+.+...+..|+++.|+++.+.-.+.. +.||..- -..||.+-..+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3333567888888888777644 3 24578889999999999999999998776543 4565432 22344332211
Q ss_pred --CcHHHHHHHHHHchhhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHH-H
Q 004024 521 --GLVEKGTEYFYSMNRDYGVIPNSKHYTCM-VDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELA-E 595 (778)
Q Consensus 521 --g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-v~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a-~ 595 (778)
.+...|...-.+ ...+.|+..--..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|.....+ +.||..+. .
T Consensus 241 ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHH
Confidence 223344433322 23566765443333 47889999999999999998 668888888655543 56665333 3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
+-++++.++.|+|......++..-...|++..|.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 4456778899999988888888777777776554
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.41 E-value=0.39 Score=49.68 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=63.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-CcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT-GLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDL 552 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~ 552 (778)
.+..|...|++..|-+++.++-+ .|-.. |++++|.++|.....-|..... ...+.-+.++
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34555555655555555544332 33344 5666666666655443322221 3445567788
Q ss_pred HhhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 553 LGRAGRLDEAQNLMKNMP---FE-----PDAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~---~~-----p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+.+.|++++|.+++++.. .+ .+.. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888889999988887751 11 1111 12122223445688999999999998888864
No 194
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.7 Score=49.34 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHhcCChhHHHHHHhhCCCC-----ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHH
Q 004024 225 GFVKQKRLGDAKWIFDRMPVR-----DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDE 296 (778)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~-----d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 296 (778)
.+.+.+.+++|..+-+..... -..++-..|+.+.-.|++++|-.+.-.|...+..-|.--+.-++..++...
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 344444455555444433311 123455566666666666666666666666566666666666655555443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.35 E-value=0.075 Score=46.66 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=66.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHh
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLG 554 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 554 (778)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999887665 34677888889999999999999998876543211 1222223445677
Q ss_pred hcCCHHHHHHHHHh
Q 004024 555 RAGRLDEAQNLMKN 568 (778)
Q Consensus 555 r~g~~~eA~~~~~~ 568 (778)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88899888887643
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.33 E-value=0.0063 Score=42.80 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
.+|..|..++...|+++.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988887764
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.29 E-value=0.047 Score=49.81 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccC
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTG 521 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 521 (778)
++..-+...|++++|.++|+-+.. .+..-|-.|...+-..|++++|++.|..... +.|| ..++-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344455677888888888887644 3566788888888888888999998888888 5564 456777777788888
Q ss_pred cHHHHHHHHHHchhhcC
Q 004024 522 LVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~ 538 (778)
+.+.|.+.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888887765433
No 198
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.24 E-value=0.052 Score=46.03 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccC--------cHHHHHHHHHHchhhcCCCCChHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGI-KPDDITMVGILSACSHTG--------LVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
...|..+...|++...-.+|+.+++.|+ .|...+|+.+|.+-.+.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666667999999999999999999 899999999998776543 244566777788765 788888888
Q ss_pred HHHHHHHhh
Q 004024 547 TCMVDLLGR 555 (778)
Q Consensus 547 ~~lv~~l~r 555 (778)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876643
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.11 E-value=0.57 Score=43.58 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=94.4
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI-PNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AAT 577 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~ 577 (778)
+.|+...-..+..+....|+..||...|.+... |+- -|....-.+..+....|++.+|...+++. ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567666667777888888888888888887765 443 35555556666677778888888888776 22222 223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
--.+...+...|..+.|+..++.++.--|.- ..-...+.+++++|+.+++..-....-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3445577888999999999999999988764 556677888999999998876554443
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.07 E-value=0.064 Score=57.78 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-K-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 509 (778)
+.+.+......+++......+++++..++-+... | -..|..++|..|..+|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3344555556677777777778888888877643 2 123556999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
|+.++..+.+.|++..|.++...|... +.-.+..++...+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888654 5555666666555555554
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.06 E-value=0.048 Score=47.86 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHhhh
Q 004024 550 VDLLGRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPE---NAGMYVLLSNLYAA 621 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~---~~~~y~~L~~~y~~ 621 (778)
..++-..|+.++|+.++++. +.... ...+-.+.++++..|++++|..++++.++-.|+ +....+.++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455667777887777765 22221 335667778888889999999999988887777 66677788888888
Q ss_pred cCCcchHHHHHH
Q 004024 622 SGRWGDVSKVRL 633 (778)
Q Consensus 622 ~g~~~~a~~~~~ 633 (778)
.|++++|.+..-
T Consensus 88 ~gr~~eAl~~~l 99 (120)
T PF12688_consen 88 LGRPKEALEWLL 99 (120)
T ss_pred CCCHHHHHHHHH
Confidence 999999888754
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.06 E-value=0.052 Score=51.91 Aligned_cols=102 Identities=22% Similarity=0.191 Sum_probs=70.9
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
+.|.++-.......|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ ..- ...+-+-|++++++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------F~h--yp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------FMH--YPRQQECAIDLLEQ 128 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------hcc--CcHHHHHHHHHHHH
Confidence 346677777778888899999999999999988765 3322 11222211 111 12345779999999
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcH-HHHHHHHHHch
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLV-EKGTEYFYSMN 534 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 534 (778)
|...|+.||..|+..++..+.+.+.. .+.++...-|-
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999877653 33334433343
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.04 E-value=0.38 Score=48.38 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.-|.+.|++.-|..-++.+++--|+.+ .+...+.+.|...|..++|.++.+.+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 446778899999999999999877754 4667888999999999999998876653
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.04 E-value=0.36 Score=52.96 Aligned_cols=262 Identities=16% Similarity=0.182 Sum_probs=134.7
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHhCCCC-----------CcchHHHHHHHHhccCChHHHHHHHHhhc-cccccHH--H
Q 004024 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEK-----------NTVSWNAMIAGYVQTKRMDMARELFEAMT-CKNVASW--N 344 (778)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~~~~--~ 344 (778)
+.+.+=+--|...|.+++|.++-.--... +.-.++..=++|.+..++..-+-+.+.-. ..+..+- -
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34555556677788888876542211110 22334444445555544433222211111 1111111 1
Q ss_pred HHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHH
Q 004024 345 TMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424 (778)
Q Consensus 345 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 424 (778)
.+.+.++-.|.+.+|-++|.+ +|....|+++|..|+.-+ ...-+...|..++
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHH
Confidence 234556667778888777754 456667777777665321 1111222333333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 004024 425 GKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504 (778)
Q Consensus 425 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 504 (778)
-+.+.+.-... ..++.--.+-..|+...|+.++|..+ ++.+|-.+-++++-+++-.
T Consensus 689 KKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~---- 744 (1081)
T KOG1538|consen 689 KKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK---- 744 (1081)
T ss_pred HHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----
Confidence 33222211110 00111112234455566666666444 3445555556665555433
Q ss_pred CChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH-HHHHH-
Q 004024 505 PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-FEPDAA-TWGAL- 581 (778)
Q Consensus 505 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~L- 581 (778)
.+..+...+..-+-+...+.-|-++|.+|-. ...++++....|+|+||..+-++.| +.||+. -|...
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWL 814 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHh
Confidence 2333444444455556666778888887743 3468899999999999999999986 556643 22222
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHH
Q 004024 582 ---------LGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 582 ---------l~a~~~~g~~~~a~~~~~~~~ 602 (778)
-.|+.+.|...+|.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 245556666666666666554
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.99 E-value=0.02 Score=61.00 Aligned_cols=64 Identities=14% Similarity=-0.050 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM---YVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~---y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...|..+..++...|++++|...++++++++|++..+ |..++.+|+..|+.++|.+.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677888888888888888888888888888887643 778888888888888888777666553
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.96 E-value=0.022 Score=45.13 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.+|.+.+++++|.+.++.+ ...|+ +..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678889999999999887 45565 66788888889999999999999999999999886655443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.93 E-value=0.039 Score=56.01 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVL 614 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~ 614 (778)
...|..-++++.+.|++++|...|+.. ...|+ +.++--|..++...|+++.|...|+++++..|+++ .++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345666667766778888888877766 22333 23556677778888899999999999888877754 45556
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.++++...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 68888888999999888887665
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.88 E-value=2.8 Score=43.91 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 004024 254 ITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFE 333 (778)
Q Consensus 254 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~ 333 (778)
|.-+...|....|.++-.+...||..-|-..|.+|++.++|++-..+... +..+.-|-..+.+|.+.|+..+|..+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 44444556666666666666656666666666666666666655554332 3355666666666666666666665554
Q ss_pred hhccccccHHHHHHHHHHhcCChhHHHHHhhh
Q 004024 334 AMTCKNVASWNTMITGYAQSGEITHARNLFDR 365 (778)
Q Consensus 334 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 365 (778)
.+ .+..-+.+|.++|++.+|.+.--+
T Consensus 262 k~------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 262 KI------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred hC------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 42 224556677777777777665433
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.073 Score=55.56 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=85.2
Q ss_pred HHHhhcCCHHHHHHHHHhC--------CCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 551 DLLGRAGRLDEAQNLMKNM--------PFEP---------DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m--------~~~p---------~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
+.|.+.|++..|...+++. +..+ -..++..|...+.+.+++..|.+..++.++++|+|..++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655442 1111 1335666777778889999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.-+.+|...|.++.|...++++.+ ..|..++|...|..+.+++++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998886 356778888888888888775
No 210
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.75 E-value=2.1 Score=41.53 Aligned_cols=194 Identities=23% Similarity=0.192 Sum_probs=141.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
...........+...+.+..+...+..... .....+..+...+...+...++++.+.........+. .......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence 356667777888888888888888877642 3455666777777888888999999998887433331 2222222
Q ss_pred H-HHhccCcHHHHHHHHHHchhhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHH
Q 004024 515 S-ACSHTGLVEKGTEYFYSMNRDYGVIP----NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD--AATWGALLGACR 586 (778)
Q Consensus 515 ~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~Ll~a~~ 586 (778)
. ++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+.
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 137 LGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 3 78889999999999988743 333 3344444445567788999999888776 33344 567888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++.+.+...+....+..|.....+..++..+...|.++++.........
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999999998666777888888777778888877766554
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.56 E-value=0.11 Score=47.67 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+...++..+...|+++.+...+++++..+|.+-..|..|..+|...|+..+|.++++.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999999999999999999888753
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.56 E-value=4 Score=43.37 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=65.2
Q ss_pred HHHhhCC--CCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCc---chHHHHHHHHHcCCChHHHHHHHHhcc--cCCc
Q 004024 113 QVFDQMP--QRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDV---VSWNTMLSGYAQNGYADAARRIFDRML--EKNE 185 (778)
Q Consensus 113 ~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~ 185 (778)
++=+++. +.|..+|-.||.-|...|..++.++++++|..|-+ .+|.--+++-....+++....+|.+.+ .-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 4455555 34778999999999999999999999999987765 367777877777788888888888876 3356
Q ss_pred chHHHHHHHHHhcC
Q 004024 186 ISWNGLLAAYVQNG 199 (778)
Q Consensus 186 ~t~~~ll~~~~~~g 199 (778)
..|...+.--.+..
T Consensus 110 dLW~lYl~YIRr~n 123 (660)
T COG5107 110 DLWMLYLEYIRRVN 123 (660)
T ss_pred hHHHHHHHHHHhhC
Confidence 66666665444433
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.51 E-value=0.89 Score=45.73 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=27.9
Q ss_pred HHHHhcCChhHHHHHhhhCCCCCeee------hhhHHHHHHhcCChhHHHHHHHHHhhc
Q 004024 348 TGYAQSGEITHARNLFDRMPQHDCIS------WAAIIAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~~~d~~~------~~~li~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
..+.+.|++++|.+.|+.+....+.+ .-.++.+|.+.+++++|...|++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445566666666666654322211 112344556666666666666666553
No 214
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.46 E-value=0.063 Score=45.54 Aligned_cols=80 Identities=15% Similarity=0.022 Sum_probs=64.5
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHhhcCc-ccCcccccchHHHhcccc--------cHHHHHHHHHHHHHcCCCCchhHH
Q 004024 374 WAAIIAGYAQSGYSEDSLRLFIEMKRYGE-RLNRSPFTSVLSTCANLA--------SLELGKQLHGQLVKVGFEAGCFVG 444 (778)
Q Consensus 374 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~ 444 (778)
-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777777999999999999999999 899999999998876532 355667788888888888888888
Q ss_pred HHHHHHHHh
Q 004024 445 NALLVMYCK 453 (778)
Q Consensus 445 ~~Li~~y~k 453 (778)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876654
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.44 E-value=0.099 Score=45.36 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=74.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHhhhcCCc
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA----GMYVLLSNLYAASGRW 625 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~y~~L~~~y~~~g~~ 625 (778)
+++.+|++++|++.|.+. .+-| .+..||.-..+++.+|+.+.|..-+++++++.-+.. ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567889999999998776 3344 578899999999999999999999999999864332 3688999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 004024 626 GDVSKVRLKMRDRGV 640 (778)
Q Consensus 626 ~~a~~~~~~m~~~g~ 640 (778)
++|..-|+...+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998887664
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=6.2 Score=44.78 Aligned_cols=320 Identities=13% Similarity=0.159 Sum_probs=175.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC---cchHHHHHHHHhccC---ChHHHHHHHHhhcc--ccccHHHHHHHHHHh
Q 004024 281 WTAMVSGYVQNGKVDEARMIFDAMPEKN---TVSWNAMIAGYVQTK---RMDMARELFEAMTC--KNVASWNTMITGYAQ 352 (778)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~t~~~ll~~~~~~~---~~~~a~~i~~~~~~--~~~~~~~~Li~~y~k 352 (778)
-..+|+-++..+.+..|+++-..+..|. ...|.....-+.+.. +.+.+..+-+++.. .....|.....---.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 4456777777788888888887777663 445555554444442 22333333333332 334456666666667
Q ss_pred cCChhHHHHHhhhCCCC--------CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHH
Q 004024 353 SGEITHARNLFDRMPQH--------DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424 (778)
Q Consensus 353 ~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 424 (778)
+|+.+-|..+.+.=+.. +.--+..-+.-..+.|+.+-...++..|...- +...|.- -+.....
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhchh
Confidence 77777777776643321 11123334444555566665555555554321 0000000 0111222
Q ss_pred HHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHH--Hhc-----cCCChhHHHHHHHHHHHcCC---hHH---
Q 004024 425 GKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAF--EEI-----VDKDVISWNTMIAGYARHGF---GKD--- 490 (778)
Q Consensus 425 a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f--~~m-----~~~d~~~~~~li~~~~~~g~---~~~--- 490 (778)
|..++.+..+. +- ..|-+.|-...+. .+...| +.. .+.-.........++++... ..+
T Consensus 591 a~~lY~~~~r~~~~-------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR-------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhHHHHHHHHhhch-------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 33333333221 10 0112222222222 121111 110 01111112223334443322 122
Q ss_pred ----HHHHHHHHHH-CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004024 491 ----ALMLFESMKT-VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 491 ----Al~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
-+++++.+.. .|..-...|..-.+.-+.+.|+..+|.++-... . .||-..|-.=+.+|+..++|++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 2223333322 234455667777788899999999998876554 3 37888888888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 566 MKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 566 ~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
-+++. .+.-|.-...+|.+.||.++|.+.+-+.-.+ .-...+|...|+..+|.+.--
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 88873 2455677789999999999999887665332 256788999999999987643
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=3.3 Score=43.59 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=89.7
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcc
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD--K-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHT 520 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~--~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~ 520 (778)
+...|.|++..|.+.+.+... | +...|-.......+.|+.++|+.--++... +.|..+ .+..-..++.-.
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 556788999999999988754 2 334455556667788999999988887765 444322 222222344556
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
+.+++|.+.|+...+. .-+.++-.. +.+|..-+++.. -.-|-.+++.-+...+.+......+.
T Consensus 335 e~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikkayrk~ 397 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSK----RKDWYKILGISRNASDDEIKKAYRKL 397 (486)
T ss_pred HHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhHHHHH
Confidence 7888888888876543 112222211 223333333221 11244444444555555555555555
Q ss_pred HHhcCCCCC-ch-------HHHHHHHhhhcCCcchHHH
Q 004024 601 IFEMEPENA-GM-------YVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 601 ~~~l~p~~~-~~-------y~~L~~~y~~~g~~~~a~~ 630 (778)
.+...|+-. +. +-..++.|.-.++.++..+
T Consensus 398 AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 398 ALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 555555521 11 3344555555555554443
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.40 E-value=1.2 Score=47.93 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=42.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV----ISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+.+...++.+...|.+.|++++|...|++..+ |+. .+|..+..+|+..|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777777777776543 432 2477777777777777777777777766
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.25 E-value=0.33 Score=49.34 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTEL 593 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~ 593 (778)
.|++++|...|+.+.+.|.-.+ ....+-.+..+|...|++++|...|+.+ |..|. +..|-.+...+...|+.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3455555555555544432221 1223445666666777777777766665 32222 3355555666778899999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 004024 594 AEKAAEVIFEMEPENAG 610 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~ 610 (778)
|...++++++..|++..
T Consensus 236 A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHCcCCHH
Confidence 99999999999988743
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.21 E-value=6.4 Score=43.63 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=126.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS 515 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 515 (778)
.+..+|..-++.-.+.|+.+.+.-.|+....| =..-|--.+.-....|+.+-|-.+...-.+--++-.+.+-..--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888888999999999999988664 223455544444445888888777776655433334443333334
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQ---NLMKNM-PFEPDAATWGALL-----GAC 585 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~Ll-----~a~ 585 (778)
-+-+.|+.+.|..+++....++ |+. +.-.--+...-|.|..+.+. +++... +.+-+..+...+. --+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4677899999999999998764 543 22223456677889999888 555544 3333333333332 123
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
...++.+.|..++.++.+..|.+...|..+.++....+-.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 4568999999999999999999999999999987777633
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.19 E-value=0.18 Score=44.73 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPDAATWGALLGACRLY 588 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+.|+.....+++.+|+..|++..|+++++.. |++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777776544 5555577777777554443
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=1.3 Score=43.51 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=115.2
Q ss_pred HHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChh--------HHHHHHHHHHHcCChHHHHHH
Q 004024 426 KQLHGQLVK-VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVI--------SWNTMIAGYARHGFGKDALML 494 (778)
Q Consensus 426 ~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~--------~~~~li~~~~~~g~~~~Al~l 494 (778)
+.+|..+.+ .|.+ +++|+..|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgnp-----qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGNP-----QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 455555543 2332 34566666555555555555554332 2222 335666666777888888999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 495 FESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG----VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 495 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
+++.++..-+-+.+-...+.+.-.+.|+++.+..+|+...+..+ +.-+.-..-.+..+|.-++++.+|...+.+.+
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 99999865455677778888888999999999999997665422 22222222333345556778888888888775
Q ss_pred C-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 571 F-EPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 571 ~-~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
. .|. +..-|+-.-..--.|+...|.+..+.+.+..|.....-..+.|
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 3 232 3333333223334578888888888888888875444333333
No 223
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1 Score=40.85 Aligned_cols=120 Identities=15% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLV 523 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 523 (778)
+|..+.+.|........++.+... +....|.+|..|++.+ .++.++.++. .++......++..|...+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 444455555555555555554332 3445556666666543 3344444442 23445555677777777777
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA-GRLDEAQNLMKNMPFEPDAATWGALLGACR 586 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~ 586 (778)
+++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 777777766532 33344444444 7778888877763 25567777776654
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.96 E-value=0.79 Score=40.13 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|..++..++..+.... .+..-++.++.--..+-+-+-..+.++++-+.|.+.| +|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHHH
Confidence 346666777777666542 1233344444433333333444455555544443333 34444433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
.-+-.+. .+....+--|.+....|.-+.-.+++..+..-+..+|...+-++++|.+.|...++.++++..-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 122233445677778888898899999888766677889999999999999999999999999999985
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.94 E-value=0.042 Score=44.20 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-------P-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.|+.+...|.+.|++++|++.+++. + -.|+ ..++..+...+...|+.+.|+..+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555544433 1 1122 33445555555555555555555555544
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.93 E-value=0.44 Score=52.33 Aligned_cols=225 Identities=12% Similarity=0.121 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCCchHHHHH--HhhCCC----CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCC
Q 004024 95 YNAMISGYLLNGQLDPARQV--FDQMPQ----RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNG 168 (778)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~--f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 168 (778)
++.-=.+|.+-+++.--+-+ ++++.+ |+.. .+...++-.|.+.+|-++|.+--..+ -.+.+|....
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlR 672 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLR 672 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHH
Confidence 44445666666555433222 233332 3332 22334566678888888887654332 2344455444
Q ss_pred ChHHHHHHHHhcc--------------cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhH
Q 004024 169 YADAARRIFDRML--------------EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGD 234 (778)
Q Consensus 169 ~~~~A~~~~~~m~--------------~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 234 (778)
.++.|.++...-. ..|+.---+....+...|+.++|..+. ...|-.+-
T Consensus 673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 5555554443221 011111112223334445555554432 23333444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHH
Q 004024 235 AKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNA 314 (778)
Q Consensus 235 A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ 314 (778)
+.++-.++...+..+.-.+..-+-+...+.-|-++|.+|.. ..++++.....+++.+|..+-++..+--...|.-
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~p 809 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMP 809 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccccccccch
Confidence 44444444433444444444444455556666666666653 2344556666677777777766666543334444
Q ss_pred HHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCC
Q 004024 315 MIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQ 368 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 368 (778)
-.+-++...++++|.+. |.|.|+-.+|.++++++..
T Consensus 810 yaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhh
Confidence 55566666666666653 3466777777777777654
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=94.80 E-value=0.76 Score=49.45 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHH-CCCCCChhHHHHHHHHHhc----------cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhh
Q 004024 488 GKDALMLFESMKT-VGIKPDDITMVGILSACSH----------TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGR 555 (778)
Q Consensus 488 ~~~Al~l~~~m~~-~g~~pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 555 (778)
.+.|+.+|.+... +.+.|+...-...+.-|-. .....+|.+.-.... .+.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4677888888771 2267765433333332211 223445555555444 3344 45556666666777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH--HHHHHhhhcCCcchHHHH
Q 004024 556 AGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV--LLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~--~L~~~y~~~g~~~~a~~~ 631 (778)
.|+++.|..+|++. .+.|| +.+|......+...|+.+.|.+.+++.++++|.-.++-+ +..++|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77788888888877 56776 557777777778889999999999999999987655443 4444566655 5566655
Q ss_pred H
Q 004024 632 R 632 (778)
Q Consensus 632 ~ 632 (778)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.64 E-value=0.17 Score=52.48 Aligned_cols=127 Identities=12% Similarity=0.017 Sum_probs=89.1
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CC--Chh
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVK----VGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIV-------DK--DVI 473 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~--d~~ 473 (778)
.|..+-+.+.-+|+++++...|..-.. .|-. .....++.|.+.|.-.|+++.|.+.++... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666778899999988876432 2321 234456678888889999999999887642 23 234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----C-CCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTV----G-IKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~----g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+..+|...|.-...+++|+..+.+-..- + ..-....+.++..++...|.-++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6777888888888899999988765431 1 11223467888889999999999987766543
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.54 E-value=0.25 Score=45.30 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESM 498 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m 498 (778)
..++..+...|+.++|.+..+.+.. | |...|..+|.+|...|+..+|++.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555444432 1 3334444555555555555555544444
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.50 E-value=0.036 Score=57.30 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHcCCChHHHHHHHHhcccC---Cc----chHHHHHHHHHhcCCHHHHHHHHH
Q 004024 164 YAQNGYADAARRIFDRMLEK---NE----ISWNGLLAAYVQNGRIEEACMLFE 209 (778)
Q Consensus 164 ~~~~g~~~~A~~~~~~m~~~---d~----~t~~~ll~~~~~~g~~~~a~~~~~ 209 (778)
+|+.|+.+....+|+..++. |. ..|..|.++|.-.+++++|++.|.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 45666666666666666532 21 234555556666667777777664
No 231
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.14 E-value=15 Score=42.85 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=58.4
Q ss_pred cCCChhHHHHHHhhCCC--CCcchHHHHHHHH--HcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHH
Q 004024 135 RNKSLSAARNLFEMMPK--RDVVSWNTMLSGY--AQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACML 207 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~--~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~ 207 (778)
..+++..|++..++..+ ||. .|...+.++ .+.|+.++|..+++..- ..|..|...+-..|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566677766665542 433 344444544 46777777777776654 23666777777777777777777777
Q ss_pred HHhcccCCc--cHhhHHHHHHHhcCCh
Q 004024 208 FESKANWEV--VSWNSLMGGFVKQKRL 232 (778)
Q Consensus 208 ~~~~~~~~~--~~~~~li~~~~~~g~~ 232 (778)
++++...++ .....+..+|.+.+++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 777766543 2333444455554444
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.09 E-value=0.057 Score=43.39 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC---CCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEME----PE---NAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~----p~---~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..+++.+...+...|++++|+..+++++++. ++ -..++..++.+|...|++++|.+.++...
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3478889999999999999999999999752 22 24568899999999999999999987654
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.01 E-value=0.64 Score=41.75 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
...|..-.. ..+.|++++|.+.|+.+ |..|- .-+---|+.++...|+++.|...+++.+++.|.++.
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344443333 34678999999888877 54443 345566889999999999999999999999999865
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.89 E-value=6.5 Score=37.94 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=129.9
Q ss_pred HHHhcccccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh-hHHHHHHH-HHHHcCC
Q 004024 413 LSTCANLASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV-ISWNTMIA-GYARHGF 487 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~-~~~~~li~-~~~~~g~ 487 (778)
.......+.+..+.......... ........+..+...+...+..+.+.+.+..... ++. ..+..... .+...|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC
Confidence 33344444444444444444332 2344455566667777777888888888887765 222 23333334 6888999
Q ss_pred hHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 488 GKDALMLFESMKTVGIKP----DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
.++|...|.+... ..| ....+......+...+..+++...+...... ... ....+..+...+...|.+++|
T Consensus 146 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 146 YEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHH
Confidence 9999999999865 444 2334444444567788999999999888753 222 367788888889999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
...+... ...|+ ...+..+...+...++.+.+...+++..+..|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9988877 34454 456666666666667899999999999999887
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.84 E-value=2.9 Score=40.81 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
....+.+.|++.+|++.|+++... -|+ ......+..++-..|+.++|...|+...+.|.-.|... +.....++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 344556677777777777777763 232 12344556667777777777777777766655555432 11111111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-----------------chHHHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA-----------------GMYVLLS 616 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-----------------~~y~~L~ 616 (778)
+.-....... ... +..+....|...++.+++.-|+++ ..-..++
T Consensus 88 ~~~~~~~~~~------~~~-------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL------RSD-------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-------TT----------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch------hcc-------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000 001 111223344444444444444433 2234567
Q ss_pred HHhhhcCCcchHHHHHHHHHh
Q 004024 617 NLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|.+.|.|.-|..-++.+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 889999999999888887765
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.73 E-value=0.66 Score=41.18 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT 520 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 520 (778)
..++.++|-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 45667777788888888877777765422111 11111111 112234789999999999999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999988888888877753
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.73 E-value=11 Score=40.17 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-HHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-TCMVD 551 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~lv~ 551 (778)
.|...+..-.+..-.+.|..+|-+..+.| +.|+...+.+.+.-++ .|+..-|..+|+.=...+ ||...| .-.++
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 45556665555555667777777777776 4455555666655443 455666666666544332 333332 23445
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 552 LLGRAGRLDEAQNLMKNM-P-FEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~-~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
-+.+-++-+.|..+|++. | ++.+ ..+|..++.-=...|++..+..+-+++.++-|+.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 556667777777777644 1 2223 4467777776677777777777777777777765
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.61 E-value=5 Score=47.91 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHh
Q 004024 261 NYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDA 303 (778)
Q Consensus 261 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 303 (778)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++..
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKP 933 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheecc
Confidence 45667766666654 33455566666677888888776643
No 239
>PRK09687 putative lyase; Provisional
Probab=93.55 E-value=10 Score=39.05 Aligned_cols=75 Identities=5% Similarity=-0.026 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEI-VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
.++..+-..-+.++++.|+. .|...+-+. ..++ ..-..+.++...|.. +|+..+.++.+ -.||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHH
Confidence 44666666677777888874 344444433 3333 234567778888875 68888888776 34566555555555
Q ss_pred Hh
Q 004024 517 CS 518 (778)
Q Consensus 517 ~~ 518 (778)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 43
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=93.55 E-value=0.78 Score=49.36 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGR---------AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG 589 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g 589 (778)
..+.|..+|.+....-.+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356778888887754466775 4445544433221 22345666666555 4455 5666667777777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.+.|...++++.+++|+.+..+...+.+..-+|+.++|.+..+...+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998876443
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.38 E-value=1.2 Score=48.18 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=111.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHH---
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLD--- 560 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~--- 560 (778)
+..+.+.-+++-++..+ +.||..+...+| |--.+..+.++.++|++..+. | .. .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EA-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HH-------hhchhhhhhccc
Confidence 34455556666666666 667765443333 233445567777777765442 0 00 111111010
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...+.+.+-+..|-..+=..|...+++.|..++|.+.++.+++..|. +-.....|.+.+...+++.|+..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111122233334455667777788888888888888776664 3456677778888888888888877776554
Q ss_pred CCccCCceeEEEeCCEEEEEEeCCCCCcch-------HHHHHHHHHHHHHHHhCCcccCCCccccccchhhHhhh-hhhh
Q 004024 639 GVKKVTGYSWLEVQNKVHTFSVGDTLHPEK-------DRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHM-LRYH 710 (778)
Q Consensus 639 g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~-------~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~-l~~h 710 (778)
...|....+|...-=+ .=.+||+..|+. ......++-+.+.++--++||+--.-.-.+--. -|.+ -..-
T Consensus 325 ~lpkSAti~YTaALLk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGD 401 (539)
T PF04184_consen 325 SLPKSATICYTAALLK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGD 401 (539)
T ss_pred cCCchHHHHHHHHHHH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCc
Confidence 4444333333210000 001233333321 123345667777888888888632211111111 1222 2345
Q ss_pred hHHHHHHHhhh
Q 004024 711 SEKLAVAYGIL 721 (778)
Q Consensus 711 se~la~~~gl~ 721 (778)
||-+|-||--+
T Consensus 402 SEAiaYAf~hL 412 (539)
T PF04184_consen 402 SEAIAYAFFHL 412 (539)
T ss_pred HHHHHHHHHHH
Confidence 77777766433
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.36 E-value=0.2 Score=32.47 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
..|..+...+...|+++.|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888999999999999999999999975
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.35 E-value=0.15 Score=33.22 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999974
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.19 E-value=1 Score=44.75 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHhcc--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----------
Q 004024 460 AYHAFEEIV--DKDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG----------- 521 (778)
Q Consensus 460 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 521 (778)
.++.|.... ++|-.+|-+++..+..+ ++.+=....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666665 67888999999888765 566667777889999999999999999998765432
Q ss_pred -----cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 004024 522 -----LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL-DEAQNLMKNM 569 (778)
Q Consensus 522 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~-~eA~~~~~~m 569 (778)
+-+-|+.++++|.. +|+.||-++-..|++++||.|.. .+...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 33457889999964 69999999999999999999874 4455555445
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.01 E-value=8.5 Score=39.65 Aligned_cols=20 Identities=10% Similarity=-0.155 Sum_probs=14.6
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 004024 583 GACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~ 602 (778)
..+...+|++.|...++-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 44567788888888887544
No 246
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.90 E-value=4.3 Score=39.57 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcc
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD--KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHT 520 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~ 520 (778)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|+..|++.++ .-|+. +.+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHH
Confidence 345677899999999998865 32 23455677888899999999999999887 44543 2333333333322
Q ss_pred C-------------cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004024 521 G-------------LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRL 587 (778)
Q Consensus 521 g-------------~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~ 587 (778)
. ...+|...|+. ++.-|=.+...++|...+..+.-.- ..-=-.+..-+.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 12333444443 4444444455555555444331000 0000123355677
Q ss_pred cCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHhhhcCCcchH
Q 004024 588 YGKTELAEKAAEVIFEMEPENAG---MYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~~~~---~y~~L~~~y~~~g~~~~a 628 (778)
.|.+.-|..-++.+++.-|+.+. +...|...|.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88899999999999998888643 456778888888887743
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.90 E-value=0.97 Score=49.62 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=70.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG 589 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g 589 (778)
...++.-+-+.|..+.|+++-..-. .=.++..+.|+++.|.++.++.+ +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 4444445555555665555432211 12455667899999988877654 7779999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
|++.|++++++. .-+..|+-+|...|+.+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999988874 456778888888888877766666665554
No 248
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=1.7 Score=44.06 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
|...|-.|...|..+|++..|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 566777777777777777777777777666
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.13 E-value=9.5 Score=37.92 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGI-KP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~-~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 544 (778)
=+..-.+.|++++|.+.|+.+..+-. .| ...+-..++-|.-+.++.++|...+++..+.|+-.||+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34444566777777777777765321 11 233455555666667777777777777666666666654
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.95 E-value=5.7 Score=35.90 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=74.8
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHH
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 491 (778)
++..+...+.......+++.+.+.+ ..+..+.|.|+.+|++.. .++....++. ..+......++..|.+++.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444444445555555555555554 356778888999998764 3445555552 33445556678888888888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHh-ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 492 LMLFESMKTVGIKPDDITMVGILSACS-HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
..++.++.. +...+.... +.++++.|.+++.+- .+.+.|..++..+
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~ 135 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHH
Confidence 888887633 112222222 337888888888752 1455666666544
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.93 E-value=2.6 Score=46.96 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=59.0
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchh------HHHHHHHHHH----hcCCHHHHHHHHHhccC--CChhHHHH
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCF------VGNALLVMYC----KCGSVEEAYHAFEEIVD--KDVISWNT 477 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~------~~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~ 477 (778)
..+++...-.|+-+.|.+.+....+.+--..+. .|...+..+. ....++.|.++++.+.+ |+...|.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344555555566666666666554432111111 1122222111 23455666666666655 56555544
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHCCC---CCChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 478 MI-AGYARHGFGKDALMLFESMKTVGI---KPDDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 478 li-~~~~~~g~~~~Al~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
.- ..+...|+.++|++.|++...... +.....+--+...+.-.+++++|.++|..+.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 33 234456666666666665442110 01122223333344445555555555555554
No 252
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.20 E-value=5.5 Score=38.25 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred HHhcCCHHHHHHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|-..|-.+-|+--|.+... |+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++-..|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 3334555555555555432 33 45678777777888899999999888877 5553 33444444456677888888
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.+-|...-..-.-.|-...|- .+--+.-++.+|..-+.+--...|..-|+.-+-.+.. |.+. -+.+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 776655433222233222222 2223444666776544332225566677766654432 2221 1223333333222
Q ss_pred CC-------CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 607 EN-------AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 607 ~~-------~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++ ..+|.-|+.-|...|..++|..+++....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22 35788999999999999999999998765
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.12 E-value=29 Score=38.70 Aligned_cols=178 Identities=8% Similarity=0.017 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHhcCChhHHHHHhhhCCCCC---eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 339 NVASWNTMITGYAQSGEITHARNLFDRMPQHD---CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 339 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+|..-++.-.+.|+.+...-+|++..-+= ...|--.+.-....|+.+-|-.++..-.+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566666777777777777777777654331 123433333333446666665555444332222111111111122
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhccC--CChhHHHHHHHHH-----HHc
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY---HAFEEIVD--KDVISWNTMIAGY-----ARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~---~~f~~m~~--~d~~~~~~li~~~-----~~~ 485 (778)
+-..|+...|+.+++.+...- +.-+.+-.--+.+--+.|..+.+. .+...... .+....+.+.--+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445667777777777766554 333334444466666777777776 33333322 2222333333222 235
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMVGILSACS 518 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 518 (778)
++.+.|..++.+|.+. +.++..-|..++.-+.
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 6777788888777763 3334444555555443
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.95 E-value=1.9 Score=43.08 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM----P---FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVL 614 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m----~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~ 614 (778)
.|+.-+++| ..|++.+|...|..- | ..|++.-| |..++...|+++.|...|..+..--|++ |..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666655 566788887766554 3 45666666 6777888888888888888888866654 566888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+.+..+.|+.++|..+++...++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888776653
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.54 E-value=7.2 Score=42.40 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=70.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHH
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-F-EPD--AATWGALLGACRL 587 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~--~~~~~~Ll~a~~~ 587 (778)
.+...+-+.|..+||.+.|.+|.+++...-.......|+..|...+...|+..++.+.+ + -|. ...|++.|--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34455667899999999999998765543345566678999999999999999998874 1 244 3456655544454
Q ss_pred cCCh---------------HHHHHHHHHHHhcCCCCCch
Q 004024 588 YGKT---------------ELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 588 ~g~~---------------~~a~~~~~~~~~l~p~~~~~ 611 (778)
-+|. ..|.++..++.+.+|.-+..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4441 23567888999999887644
No 256
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.43 E-value=0.015 Score=53.31 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=32.5
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 465 (778)
..++..+.+.+.++...++++.+.+.+-..+..+.+.|+.+|++.+..+...+.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34555555556666666666666655545566677777777777655555555544
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.19 E-value=51 Score=39.94 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH----HHhccCcHHHHHHHH
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS----ACSHTGLVEKGTEYF 530 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~----a~~~~g~~~~a~~~~ 530 (778)
|++++|..-+.++. ...|.-.+.---+||.+.+|+.++ +|+..++..+.. -|...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566665555543 223444444445667777776654 455544444433 334455555555555
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT--WGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+..-+ ..--+.+|-.+|+|.+|+.+..++....|... -..|.+-|...+..-+|-++.+....
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----- 1027 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----- 1027 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----
Confidence 44321 11234455666777777777766643334332 24555666666655444444433221
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.+.--...|.++..|++|.++-.
T Consensus 1028 --d~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1028 --DPEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred --CHHHHHHHHhhHhHHHHHHHHHH
Confidence 11222334556666777766543
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.99 E-value=8.2 Score=43.05 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHH-HHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV-DLLGRAGRLDEAQNLMKNMPF------EPDAATWGALLGACRLYGKTE 592 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-~~l~r~g~~~eA~~~~~~m~~------~p~~~~~~~Ll~a~~~~g~~~ 592 (778)
...++.+.+++..+.+. -|+...|...- .++...|++++|.+.+++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777766654 34544443332 445556777777777775410 112333445566677788899
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHhhhcCCc-------chHHHHHHHHH
Q 004024 593 LAEKAAEVIFEMEPENAGMYV-LLSNLYAASGRW-------GDVSKVRLKMR 636 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~-~L~~~y~~~g~~-------~~a~~~~~~m~ 636 (778)
+|...+.++.+...-+.+.|. ..+-+|...|+. ++|.++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999888887776656554 556667778888 66666666554
No 259
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.81 E-value=1.4 Score=41.60 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC
Q 004024 551 DLLGRAGRLDEAQNLMKNM----PFEP---DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG 623 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m----~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g 623 (778)
+-+...|.+++|..-+... |--| ..+.|..-..+..+.+..+.|+....+++++.|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3345677777777766554 2111 13445555566778889999999999999999999899999999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 004024 624 RWGDVSKVRLKMRDRG 639 (778)
Q Consensus 624 ~~~~a~~~~~~m~~~g 639 (778)
++++|.+-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999888743
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.77 E-value=3.5 Score=43.48 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.+..+.-.+.+.+++.+|++.-++. ..+| |+-..--=..||...|+++.|+..++++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3455566667777777777766554 3344 3444444567888899999999999999999999988888888887777
Q ss_pred CCcchH-HHHHHHHHh
Q 004024 623 GRWGDV-SKVRLKMRD 637 (778)
Q Consensus 623 g~~~~a-~~~~~~m~~ 637 (778)
.+.++. .+++..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 666655 667777754
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=3.1 Score=42.45 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=112.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHH----HHHHhhcCCH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCM----VDLLGRAGRL 559 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----v~~l~r~g~~ 559 (778)
-.|+..+|-..++++.+. .+.|-..+.-.-.+|...|+.+.-...++.+.. .-.|+...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888874 445667777778899999999988888888764 335565555544 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
++|++.-++. .+.| |.-.-.++.......|..++|.+..++--..=.+ -+-.|-..+-.|.+.+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998877 5555 3445566777777888888887766554332111 13456677778888999999999987
Q ss_pred HHHhCCCccCCc
Q 004024 634 KMRDRGVKKVTG 645 (778)
Q Consensus 634 ~m~~~g~~k~~g 645 (778)
.=.-+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654445555554
No 262
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=45 Score=38.48 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHcCCChhHHHHHHhhCCC--C---CcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHH
Q 004024 132 GYVRNKSLSAARNLFEMMPK--R---DVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIE 202 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~ 202 (778)
-+.+.+.+++|+..-..-.. + --..+-..|..+.-.|++++|-.+.-.|...+..-|.--+.-++..++..
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455666677666655442 1 12346666677777777777777766666666666655555555555443
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.58 E-value=31 Score=36.61 Aligned_cols=145 Identities=8% Similarity=-0.047 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHchhh-cCCCCChHH
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP---DDITMVGILSACSHTGLVEKGTEYFYSMNRD-YGVIPNSKH 545 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 545 (778)
....+|..++..+.++|+++.|...+.++...+..+ +...+..-....-..|+-++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345577788888888888888888888877643222 2223333344555667777777777666551 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHH------cCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM--P-FEP--DAATWGALLGACRL------YGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m--~-~~p--~~~~~~~Ll~a~~~------~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
...+...+.. ..+....- . ..+ -..++..+..-+.. .++.+.+...++.+.++.|+....+..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111100000 00000000 0 000 01122222222223 377888999999999999988888888
Q ss_pred HHHHhh
Q 004024 615 LSNLYA 620 (778)
Q Consensus 615 L~~~y~ 620 (778)
++..+.
T Consensus 298 ~a~~~~ 303 (352)
T PF02259_consen 298 WALFND 303 (352)
T ss_pred HHHHHH
Confidence 777664
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.51 E-value=4 Score=36.76 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 482 YARHGFGKDALMLFESMKTVGIKP--DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
..+.|++++|.+.|+.+...---+ ....-..++.++...|++++|...++..++.+.-.|++ .|.....+++.-...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHh
Confidence 345566666666666665531100 12234445555555555555555555555444444432 233333332221111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 560 DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+ ..+..+. +.=+-.+....|...++++++.-|++.
T Consensus 99 ~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 99 E---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred h---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 1111111 000111235677788888888888763
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=6.5 Score=39.80 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=74.8
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCChHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGAL---LGACRLYGKTEL 593 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~L---l~a~~~~g~~~~ 593 (778)
....|+..++...|...... ..-+.+.-..|...|...|+.++|..++..+|.+-...-|..| +.......+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34556666666666655432 1113445566778888889999999999888765544444331 222223333322
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
. ..++.-+.-+|+|...-..|+..|...|+.++|.+.+-.+.
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 23344556789999999999999999999999988755443
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.43 E-value=1.5 Score=44.80 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR 558 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 558 (778)
.-|.++|.+++|++.|.+-+. +.| |.+++..-..||.+...+..|..-.+....- -...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHH
Confidence 457778888888888887766 677 8888888777887776666554433332210 1123445555443
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 559 LDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
-.+ ..|+.++|.+-++.+++++|++..
T Consensus 174 AR~-------------------------~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 174 ARE-------------------------SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHH-------------------------HHhhHHHHHHhHHHHHhhCcccHH
Confidence 333 345667788888888888888643
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.25 E-value=7 Score=40.47 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHhccCcHHHHHHHHHHchhhcC--CCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHH-----HH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYG--VIP--NSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPDAA-----TW 578 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~--~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~-----~~ 578 (778)
.|..-.+.++++++.|+...+.-. -.| ....|..|..+|++..+.++|.-+..+. .++.=.. +.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 344444456666666665543111 111 2345666666666666666655443332 2111111 12
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----chHHHHHHHhhhcCCcchHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEM--EPENA----GMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l--~p~~~----~~y~~L~~~y~~~g~~~~a~~ 630 (778)
-.+.-+++..|.+..|.+..+.+.++ ...|. .....+++||-..|+.|.|..
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 22335566666666666666665543 22222 223456667776666665544
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=51 Score=38.37 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH----chhhcCCCCChHHHHHHHHHHh
Q 004024 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYS----MNRDYGVIPNSKHYTCMVDLLG 554 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~----m~~~~~~~p~~~~y~~lv~~l~ 554 (778)
+..+.++.+.+.++.+.+..-.. |+.-|..+|+-+.+.+.++.-.++..+ +.....++| ..+++.|+
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp-----l~VL~~La 782 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP-----LHVLQILA 782 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH-----HHHHHHHh
Confidence 33445555566666555554332 455566666666666655554443333 333323443 23667777
Q ss_pred hcCCH
Q 004024 555 RAGRL 559 (778)
Q Consensus 555 r~g~~ 559 (778)
+.+.+
T Consensus 783 kn~~l 787 (933)
T KOG2114|consen 783 KNGTL 787 (933)
T ss_pred cCCce
Confidence 77653
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=29 Score=35.37 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=80.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHH-HHHHHHHHhhcCC
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKH-YTCMVDLLGRAGR 558 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~ 558 (778)
.....|+..+|..+|..... ..|+ ...-..+..++...|+++.|..++..+-.+. .-+..+ ...=+..+.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence 34556677777777766665 2332 2344455566677777777777776653220 001111 1223455666665
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHhhhcCCcchH-HHHHHH
Q 004024 559 LDEAQNLMKNMPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME--PENAGMYVLLSNLYAASGRWGDV-SKVRLK 634 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~--p~~~~~y~~L~~~y~~~g~~~~a-~~~~~~ 634 (778)
..+..++..+..-.| |...--.|...+...|+.+.|...+-.++..+ -++..+--.|..++...|.-+.+ .+.|+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554455 34444555566666677666655554444432 33455566666666666644433 334444
Q ss_pred H
Q 004024 635 M 635 (778)
Q Consensus 635 m 635 (778)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
No 270
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=31 Score=35.53 Aligned_cols=216 Identities=11% Similarity=0.003 Sum_probs=97.6
Q ss_pred hCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCCh----hHHHHHHhhC--CCCCcchHHH
Q 004024 86 SMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSL----SAARNLFEMM--PKRDVVSWNT 159 (778)
Q Consensus 86 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~m--~~~d~~~~~~ 159 (778)
....+|..+.-..+.++...|..+-...+...+..+|...-...+.++++.|.. .++..++..+ ..+|..+-.+
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 334456656666666666666543333333333455666666666677776653 3566666654 3456555555
Q ss_pred HHHHHHcCCCh-----HHHHHHHHhcc-cCCcchHHHHHHHHHhcCCHHHHHHHHHhccc-CCccHhhHHHHHHHhcC-C
Q 004024 160 MLSGYAQNGYA-----DAARRIFDRML-EKNEISWNGLLAAYVQNGRIEEACMLFESKAN-WEVVSWNSLMGGFVKQK-R 231 (778)
Q Consensus 160 li~~~~~~g~~-----~~A~~~~~~m~-~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g-~ 231 (778)
.+.++...+.. ..+...+.... .+|..+--..+.++.+.++ .++...+-.+++ .+..+-...+.++.+.+ .
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 56665554321 22333333322 3344444455555555554 334444433333 22222223333333321 1
Q ss_pred hhHHHHHH-hhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC
Q 004024 232 LGDAKWIF-DRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 232 ~~~A~~~~-~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
...+...+ ..+..+|..+-..-+.++++.|+..-.-.+.+.+..++ ..-..+.++.+.|.. +|+..+..+.
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 12222222 22224455555555555555555322222222222222 223444455555553 3444444444
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.84 E-value=0.74 Score=29.77 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|..+...+...|+.+.|...+++.++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357777788888899999999999999988853
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.40 E-value=3 Score=42.34 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKT-----VGIKPDDITM 510 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~pd~~t~ 510 (778)
..++..++..|..+|+.+.+...+++... -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34667788999999999999999998865 3667899999999999999999999998866 4555554443
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.38 E-value=29 Score=34.63 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=99.1
Q ss_pred HhcCCHHHHHHHHHhccCCC---h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----
Q 004024 452 CKCGSVEEAYHAFEEIVDKD---V---ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT----- 520 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~----- 520 (778)
.+.|++++|.+.|+.+.... . .+--.++-++-+.+++++|+..+++....--.-..+-|..-|.+.++-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 46799999999999997632 2 233345567778999999999999988732211224455555554421
Q ss_pred --CcHHHH---HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHH
Q 004024 521 --GLVEKG---TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT--WGALLGACRLYGKTEL 593 (778)
Q Consensus 521 --g~~~~a---~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~Ll~a~~~~g~~~~ 593 (778)
.+...+ ..-|+....+| |+ +.--.+|..-+.... |... =.+...-|.++|...-
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 112222 22222222222 21 111122222111110 0000 0133456778888888
Q ss_pred HHHHHHHHHhcCCCCCc---hHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAG---MYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~---~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|..-++.+++--|+.+. .+-.|.++|...|..++|.+..+.+...
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888887666544 4556677899999999999988887754
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=26 Score=34.54 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCCch
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMP-----F--EPDA-ATWGALLGACRLYGKTELAEKAAEVIFEM----EPENAGM 611 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~-----~--~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l----~p~~~~~ 611 (778)
+.|.....+|.|..+++||-..+.+-. + -|+. -.+-+++-.+....|+..|++.++.--+. .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345556666777777777766655431 1 1222 12333333444455777777777775553 4555556
Q ss_pred HHHHHHHhhhcCCcchHHHHH
Q 004024 612 YVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 612 y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...|...| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 65565555 566777666654
No 275
>PRK15331 chaperone protein SicA; Provisional
Probab=88.06 E-value=1.6 Score=40.16 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHhcCChHHHHHHHHhCC--CC-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHH
Q 004024 288 YVQNGKVDEARMIFDAMP--EK-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 288 ~~~~g~~~~A~~l~~~m~--~~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~ 361 (778)
+-+.|++++|..+|+-+. .+ |..-+..|..++-..+++++|...+.... ..|+...--....|...|+.+.|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 334455555555554432 22 33444444444445555555555555443 3344444444455555555555555
Q ss_pred HhhhC
Q 004024 362 LFDRM 366 (778)
Q Consensus 362 ~f~~m 366 (778)
.|...
T Consensus 127 ~f~~a 131 (165)
T PRK15331 127 CFELV 131 (165)
T ss_pred HHHHH
Confidence 55444
No 276
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.84 E-value=23 Score=37.71 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHhhhCCCC---Ceeehh----hHHHHHHh---cCChhHHHHHHHHHhhcCcccCccccc
Q 004024 349 GYAQSGEITHARNLFDRMPQH---DCISWA----AIIAGYAQ---SGYSEDSLRLFIEMKRYGERLNRSPFT 410 (778)
Q Consensus 349 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~----~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~ 410 (778)
.|-...+++...++++.+... ++..-. ...-++.+ .|+.++|++++..+....-.++..||.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 355555555555555555432 111111 12223334 566666666666654444444444443
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.77 E-value=26 Score=35.45 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhh-cCCHHHHHHHHHhC----------CCCCC-----HHHHHHHH----HHHHHcCChHHHHHHHHHH
Q 004024 542 NSKHYTCMVDLLGR-AGRLDEAQNLMKNM----------PFEPD-----AATWGALL----GACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 542 ~~~~y~~lv~~l~r-~g~~~eA~~~~~~m----------~~~p~-----~~~~~~Ll----~a~~~~g~~~~a~~~~~~~ 601 (778)
|+.-|-..+.-..+ .-.++++.+++... +..-| ..+|..++ .+|...|++..|..+.+++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445444443322 23466777666555 11112 22444444 6788999999999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.++|-+...+-.|.++|+..|+--.|.+-++.|.+
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999999999999999999999999999988888864
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.44 E-value=64 Score=37.60 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHhhhcCC
Q 004024 550 VDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE-MEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~y~~L~~~y~~~g~ 624 (778)
+..+....+.+++..+.+..+ +-++..|--+|..+...++.+.-.+..+++++ ++.++.-+-..+.+++++.+-
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 334455667777777777775 33788888888888888876666555555554 333333333445556655554
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.32 E-value=1.7 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
+|..+...|...|++++|+++|++..+ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 566654
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.01 E-value=5.7 Score=43.70 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
...++|+++.|.++-++.. +...|..|......+|+.+-|.+.|.+... |..++--+.-.|+.+.-.++
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3445666666665544433 444666666666666666666666655332 33444444445554443333
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.89 E-value=27 Score=32.63 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
++..+++.+...|++-+|.++.++.+. -+...-.-++.|-...+|...-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 366788888889999999999987531 111222334555555555444444443
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.66 E-value=11 Score=38.99 Aligned_cols=92 Identities=15% Similarity=0.272 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcc-Cc-
Q 004024 457 VEEAYHAFEEIVD-------KDVISWNTMIAGYARHGF----GKDALMLFESMKTVGIKPD-DITMVGILSACSHT-GL- 522 (778)
Q Consensus 457 ~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~----~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~-g~- 522 (778)
...|..+|+.|.+ ++-.++.+|+.. ..++ .+.+...|+.+...|+..+ ..-+.+-+-++... ..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456666666654 233445555443 2222 3566778888888887664 43444444444322 22
Q ss_pred -HHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 523 -VEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 523 -~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+.++.++++.+.+. |+++...||..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888776 88888888876643
No 283
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.39 E-value=6.5 Score=39.40 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDD----ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCM 549 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~l 549 (778)
|+.-+. +.+.|++.+|...|...++.. |+. -.+-.|..++...|+.++|..+|..+.++|+-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554444 344566777777777777643 321 123345566666666666666666666665555543 555555
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 004024 550 VDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m 569 (778)
...+++.|+-++|-..+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555554444
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.19 E-value=1.5 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
.+|..+...|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677788888888888888888888887 5665
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.18 E-value=57 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHhhCCC--C-CcchHHHHH-HHHHcCCChHHHHHHHHhcc
Q 004024 122 DLVSWNVMISGYVRNKSLSAARNLFEMMPK--R-DVVSWNTML-SGYAQNGYADAARRIFDRML 181 (778)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 181 (778)
|+..|..-+.-+-+.+.+.+.-.+|.+|.. | ++..|-.-. .-|-.+-+++.|+.+|..-+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 666676666655555556666677776652 2 223332221 12233334666666666554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.74 E-value=22 Score=32.85 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=52.0
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMP-FEPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
...+..+++..++..+. -+.|. .++-.+-+.++.+.|+|.+|..+++++. -.|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 44455666666665554 33443 2233334456678899999999998884 2345555567777776654444445
Q ss_pred HHHHHHHhcCCC
Q 004024 596 KAAEVIFEMEPE 607 (778)
Q Consensus 596 ~~~~~~~~l~p~ 607 (778)
..++.+++-.|+
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 556666666653
No 287
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.63 E-value=5.1 Score=35.17 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666666665 444 344566666666666666666555555443
No 288
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=85.55 E-value=2.4 Score=42.18 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHhhhCC--CCCeeehhhHHHHHHhc-----CChhHHHHHHHHHhhcCcccCcccccchHHHhccc------------
Q 004024 359 ARNLFDRMP--QHDCISWAAIIAGYAQS-----GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL------------ 419 (778)
Q Consensus 359 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------ 419 (778)
.++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455566665 56667777777776543 44555556677788888888888888888776542
Q ss_pred ----ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 004024 420 ----ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 420 ----~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 456 (778)
..-+-+..++++|...|+-||-.+-..|++.+++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2334567788888888888888888888888877765
No 289
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=34 Score=36.10 Aligned_cols=110 Identities=21% Similarity=0.305 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcC---CCC----
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGAL------------LGACRLYGKTELAEKAAEVIFEME---PEN---- 608 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~L------------l~a~~~~g~~~~a~~~~~~~~~l~---p~~---- 608 (778)
.|...+-..|++++|.+++.+.|++ ||+++ +.-|...+|+-.|....+++...- |+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4556777899999999999988743 33332 467888999999988888877532 221
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeC
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVG 661 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~ 661 (778)
-.+|.++..++.+.+.+=++.+.++..-+-|-.+...--|+++-..+-.|+.-
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 24688999999999999999999999988776666555688876666667653
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.42 E-value=7.6 Score=36.85 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVDKD------VISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456678888999999999999998886642 23566677777788888888887776655
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.18 E-value=1.5 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|..|...|...|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666666666666443
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.14 E-value=25 Score=37.41 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
....+|..+...|+++|+++.|..++.++....+. .+.....-+.+.-..|+.++|.+..+...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999986632 4566777799999999999999987776653
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.71 E-value=2.7 Score=38.64 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456666666666666666666666666666666666666666666665543
No 294
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.10 E-value=1.1e+02 Score=37.38 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=28.5
Q ss_pred HHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhc
Q 004024 299 MIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQS 353 (778)
Q Consensus 299 ~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~ 353 (778)
.+...+..+|..+-...+..+...+..+....+...+..+|..+-...+.+..+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3334444556666666666666666544333333333355555555555555444
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.74 E-value=2.4 Score=28.02 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=28 Score=34.32 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.++--..+|..+|..+.|-..+++... ...+-++++|+++|++-.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 455567788888888887777665422 234566788888887654
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.98 E-value=3.4 Score=37.31 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=41.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 588 YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6777788888888888888888888888888888888888888887776654
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.59 E-value=1e+02 Score=35.78 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHhcCChHHHHHHHHh--CCCCCcchHHHHHHHHhccCChHHHHHHHHhhc-----cccccHHHHHHHHHHhc---C
Q 004024 285 VSGYVQNGKVDEARMIFDA--MPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT-----CKNVASWNTMITGYAQS---G 354 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~--m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-----~~~~~~~~~Li~~y~k~---g 354 (778)
...+.-.|+++.|++.+-+ ....|.+.+...+.-+.-.+-.+... ..+. .+...-+..||..|.+. .
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3455667999999998887 22225666665555444333222211 2222 11123466777777764 3
Q ss_pred ChhHHHHHhhhCC
Q 004024 355 EITHARNLFDRMP 367 (778)
Q Consensus 355 ~~~~A~~~f~~m~ 367 (778)
+..+|.+.|--+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 5566666655443
No 299
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.45 E-value=18 Score=41.12 Aligned_cols=183 Identities=21% Similarity=0.348 Sum_probs=109.4
Q ss_pred hhHHHHHHhcCChhHHHHHHHHHhhcCc------ccC-cccccchHHHhcccccHHHHHHHHHHHHHc-C-CCCchhHHH
Q 004024 375 AAIIAGYAQSGYSEDSLRLFIEMKRYGE------RLN-RSPFTSVLSTCANLASLELGKQLHGQLVKV-G-FEAGCFVGN 445 (778)
Q Consensus 375 ~~li~~~~~~g~~~~Al~l~~~m~~~g~------~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~ 445 (778)
..|+-.|....+++..+++.+.+++--- .++ .+.|.-.|+-=.+-|+-++|..+.--+.+. | +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap------ 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP------ 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC------
Confidence 3445556666667777777776654210 011 124555555555667777777766555443 3 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH---HHHHHHHHhccCc
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT---MVGILSACSHTGL 522 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t---~~~ll~a~~~~g~ 522 (778)
||||-||++ ++.|- +-+.|-..+..+.|++.|++.-+ +.|+..+ +..+|.|-.+.
T Consensus 279 ---Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~-- 336 (1226)
T KOG4279|consen 279 ---DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH-- 336 (1226)
T ss_pred ---ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--
Confidence 478888875 33321 12334455667788889988877 7887654 44444433221
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
++...+ |+. .-..|-.+++|.|.++.-.++++- .+.+.+-...+|+.++..+++.++
T Consensus 337 Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 337 FENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred ccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHh
Confidence 111111 111 122355678999999887776643 244566677889999999999999
Q ss_pred hcCCCC
Q 004024 603 EMEPEN 608 (778)
Q Consensus 603 ~l~p~~ 608 (778)
++.|..
T Consensus 394 KLk~P~ 399 (1226)
T KOG4279|consen 394 KLKPPV 399 (1226)
T ss_pred ccCCce
Confidence 999864
No 300
>PRK12798 chemotaxis protein; Reviewed
Probab=82.19 E-value=77 Score=34.08 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=115.1
Q ss_pred cCCHHHHHHHHHhccC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHH
Q 004024 454 CGSVEEAYHAFEEIVD----KDVISWNTMIAGYA-RHGFGKDALMLFESMKTVGIKPDDI----TMVGILSACSHTGLVE 524 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~-~~g~~~~Al~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~ 524 (778)
.|+-++|.+.+..+.. +.+..+-+|+.+-. ...+..+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999998854 45566777776654 45689999999999876 566543 3333444668899999
Q ss_pred HHHHHHHHchhhcCCCCChHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTC-MVDLLGR---AGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~-lv~~l~r---~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
++..+-......|.-.|=...|.. ++.++.+ .-..+.-.+++..|+-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988777777776776675444432 3333333 334555566667764223356888888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhc
Q 004024 601 IFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
+..+.+. ...-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9998744 34445556666544
No 301
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=2.6 Score=48.34 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=83.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQN 564 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 564 (778)
+.++++.+.+.+.-.--| .++|.-+.+.|-.+-|+.+.+.=...+ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666666554433222 234455566777777766654433332 33457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCcc
Q 004024 565 LMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKK 642 (778)
Q Consensus 565 ~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k 642 (778)
.-++.. |..+|..|...-..+||.+.++..+++.. .+..|+-+|.-.|+.++ +.++|+-..+++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eK---L~Km~~iae~r~ 728 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEK---LSKMMKIAEIRN 728 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHH---HHHHHHHHHhhh
Confidence 988765 67899999999999999999999998765 45567788888888765 445555443433
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.36 E-value=4.2 Score=41.65 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=70.5
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKN-MPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
+-|.+.|.++||++-+.+ |...| +++++..-..||.+.+.+..|+.-.+.++.++.....+|..-+.+-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 457788999999998865 46777 7888888889999999999999999999999877777777777777777888888
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+-.+...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 776655443
No 303
>PRK10941 hypothetical protein; Provisional
Probab=81.18 E-value=7.8 Score=39.42 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+.|-.++...++++.|.++.+.++.+.|+++.-.---+-+|++.|.+..|..-++.-.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567778899999999999999999999999998888899999999999999987776554
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.95 E-value=3 Score=30.49 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
|.-++.+.|+++.|.+..+.+++++|+|..+-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4457789999999999999999999999554433
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.15 E-value=3.7 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777788888888888887776 5554
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.06 E-value=6 Score=40.21 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++.++...|+.+.+...++++++++|-+-..|..|...|...|+...|...++.+++
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666554
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.00 E-value=24 Score=29.53 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVG 512 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ 512 (778)
+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 334567899999999999888899999987754 36677777777777787776 555555543
No 308
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.96 E-value=31 Score=35.62 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=58.9
Q ss_pred cCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC---CccHhhHHHH----HHHhcCChhHH
Q 004024 166 QNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANW---EVVSWNSLMG----GFVKQKRLGDA 235 (778)
Q Consensus 166 ~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~----~~~~~g~~~~A 235 (778)
-+|...+|....++++ +.|..++...=.+|.-+|+.+.-+..+++++.. |...|.-+=. ++..+|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3556666666666665 446666666666777777766666666665543 3322222222 22345555555
Q ss_pred HHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhC
Q 004024 236 KWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEA 273 (778)
Q Consensus 236 ~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m 273 (778)
++.-++.. +-|...-.++...+--+|+..++.+...+-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555444 223444455555566666666666665543
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.51 E-value=1.4e+02 Score=34.83 Aligned_cols=126 Identities=10% Similarity=0.130 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCChh--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 004024 486 GFGKDALMLFESMKTVG-IKPDDI--TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 562 (778)
.+.+.|..++.+..... ..++.. ....+.......+...++...+...... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 45688888888764432 333322 2223322223332356667766654322 12333344444454588899999
Q ss_pred HHHHHhCCCC-CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 563 QNLMKNMPFE-PDAATWGA-LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 563 ~~~~~~m~~~-p~~~~~~~-Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
...|..||-. .+..-|.- +..+....|+.+.|...++++.. + ...|-.|+.-
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa~ 385 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAAQ 385 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHHH
Confidence 9999888521 12222322 33454557999999999888743 2 3467666543
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.50 E-value=58 Score=33.80 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc--cC----cHHHHHHHHHHchhhcCCCCC
Q 004024 488 GKDALMLFESMKTVGIKPDDITMVGILSACSH--TG----LVEKGTEYFYSMNRDYGVIPN 542 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p~ 542 (778)
.++.+.+++.|.+.|++-+..+|.+.+..... .. ...++..+|+.|++++.+--.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 35567788999999999888887764443333 22 356788999999988766443
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.06 E-value=28 Score=32.47 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=32.0
Q ss_pred HhcCChhHHHHHhhhCCCCCeeehhhHH-----HHHHhcCChhHHHHHHHHHhhcC
Q 004024 351 AQSGEITHARNLFDRMPQHDCISWAAII-----AGYAQSGYSEDSLRLFIEMKRYG 401 (778)
Q Consensus 351 ~k~g~~~~A~~~f~~m~~~d~~~~~~li-----~~~~~~g~~~~Al~l~~~m~~~g 401 (778)
++.+..++|+.-|..+.+-+--+|-.|. ...++.|+..+|...|.+.-...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 4556666777777766665555554432 34566777777777777776543
No 312
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.19 E-value=1.1e+02 Score=32.80 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD-----K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
...-+.+-|..||+++.|.+.+-+..+ + -+..|-.+|..-.-.|++...+..-.+..+ .|+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s---t~~~--------- 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES---TPDA--------- 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh---Cchh---------
Confidence 445678899999999999999988543 1 223455555555566777777766666554 2211
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP---------FEPD-AATWGALLGACR 586 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~-~~~~~~Ll~a~~ 586 (778)
+..... .+.+....+..+..+..+ +.+.|.+.|-..+ +.|. ..+|+ .+.|..
T Consensus 220 -------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALA 281 (466)
T KOG0686|consen 220 -------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALA 281 (466)
T ss_pred -------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhc
Confidence 111111 344556666666666655 5555554443331 3344 33443 344443
Q ss_pred HcCChH-----HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTE-----LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~-----~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.-+.-+ ..-..|+.+++++|. ....|...| .+++..-.++.+.++.
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 333222 234567788888884 345555555 3455555555555543
No 313
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.49 E-value=82 Score=33.05 Aligned_cols=127 Identities=20% Similarity=0.073 Sum_probs=77.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHhccCcHHHHHHHHHHc---hhhcCCCCChHHHHH
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTVGIKPD-----DITMVGILSACSHTGLVEKGTEYFYSM---NRDYGVIPNSKHYTC 548 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~y~~ 548 (778)
+|..++.-.+.++++++.|+....---..+ -..++++-+-+....+.+++.-+.... ...+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355666666778888888887665221111 235777888888888888877655433 333454443333444
Q ss_pred HH-----HHHhhcCCHHHHHHHHH-------hCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 549 MV-----DLLGRAGRLDEAQNLMK-------NMPFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 549 lv-----~~l~r~g~~~eA~~~~~-------~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|+ -.|-..|++-+|.+.-+ .++-.|- ......+...|+..||.|.|..-++.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 33 23344555544444433 3443332 44566778899999999999988888775
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.02 E-value=17 Score=30.24 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+.-++.+-++.+....+.|++....+.|.||-+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34455666667777778999999999999999999999999999988754333 4556776654
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.32 E-value=31 Score=32.70 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCcHHHHHHHHHHchhhcCC--CCC----hH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI--TMVGILSACSHTGLVEKGTEYFYSMNRDYGV--IPN----SK 544 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~ 544 (778)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+.......... .++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 357778899999999999999999999877677654 4677888888889988888887776543111 111 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
.|..+.. ...|++.+|-+.|-+.
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHcc
Confidence 2333322 2357788877777665
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=20 Score=36.61 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=73.0
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-K--------DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 435 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~--------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
.|.+....+...+|+.-....+++++...+-++.. | ...+|--++ -.=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 35555666666777777777888999888877644 2 223333332 3346789999999999999999
Q ss_pred ChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 506 DDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 506 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
|..|+..++..+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999887766654
No 317
>PRK09169 hypothetical protein; Validated
Probab=74.42 E-value=3e+02 Score=36.56 Aligned_cols=512 Identities=9% Similarity=0.022 Sum_probs=233.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCC---------CCCcchHHHHHHHHHcCCChhHHHHHHhhC----C-------C
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMP---------QRDLVSWNVMISGYVRNKSLSAARNLFEMM----P-------K 151 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~-------~ 151 (778)
...+..+.+.++|.-+-....+.+..+. .-+......++++++|=.+-..+...-+.. . .
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 3456667777776655443333222221 235566777788887765544333322211 1 1
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHhcc-----------cCCcchHHHHHHHHHhcCCHHHHHHHH----Hhccc---
Q 004024 152 RDVVSWNTMLSGYAQNGYADAARRIFDRML-----------EKNEISWNGLLAAYVQNGRIEEACMLF----ESKAN--- 213 (778)
Q Consensus 152 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~d~~t~~~ll~~~~~~g~~~~a~~~~----~~~~~--- 213 (778)
-|......++++++|.-+.......-..+- .-+......+++++++-.+-+.+.+.- .++..
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 233344556777777665554444333331 124555677777777765544433222 11111
Q ss_pred ----CCccHhhHHHHHHHhcCChhHHHHHHhhCC-----------CCChhHHHHHHHHHhcCCCHHHHHH----HHhhCC
Q 004024 214 ----WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP-----------VRDEVSWNTMITGYAQNNYLAEAQR----LFEEAP 274 (778)
Q Consensus 214 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~d~~~~~~li~~y~~~g~~~~A~~----~f~~m~ 274 (778)
.+.......+++++|..+-+.+...-..+. .-|..-....+++++|..+.+.+.. +-+++.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 122334556677777655443332221111 1133334445667777666554322 222221
Q ss_pred -------CCCeehHHHHHHHHHhcCChHH----HHHHHHhCCC-------CCcchHHHHHHHHhccCChHHHHHHHHhhc
Q 004024 275 -------VKDVFTWTAMVSGYVQNGKVDE----ARMIFDAMPE-------KNTVSWNAMIAGYVQTKRMDMARELFEAMT 336 (778)
Q Consensus 275 -------~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~-------~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 336 (778)
.-|..-....+.+++|-+.-+. |..+...+.. -|..-...++.+|++.+.-+...+....+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1133344556667776655332 2223222221 166667777778887766553333322211
Q ss_pred -----------cccccHHHHHHHHHHhcCChhH----HHHHhhhCCC-------CCeeehhhHHHHHHhcCChhHH----
Q 004024 337 -----------CKNVASWNTMITGYAQSGEITH----ARNLFDRMPQ-------HDCISWAAIIAGYAQSGYSEDS---- 390 (778)
Q Consensus 337 -----------~~~~~~~~~Li~~y~k~g~~~~----A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~~~A---- 390 (778)
.-|..-....+++++|.++-+. |..+...+.. -+..-....+.++++-++.+..
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 2234444556666777665442 2233333211 1233445566667766655443
Q ss_pred HHHHHHHhhc---CcccCcccccchHHHhcccccHHHH----HHHHHHHHHcC---CCCchhHHHHHHHHHHhcCCHHH-
Q 004024 391 LRLFIEMKRY---GERLNRSPFTSVLSTCANLASLELG----KQLHGQLVKVG---FEAGCFVGNALLVMYCKCGSVEE- 459 (778)
Q Consensus 391 l~l~~~m~~~---g~~pd~~t~~~ll~a~~~~~~~~~a----~~i~~~~~~~g---~~~~~~~~~~Li~~y~k~g~~~~- 459 (778)
..+..++... --.-|..-+..++.++++-..-+.. ..+...+.+.. -..+..-....+++++|.+.-..
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 2222222221 1122344456666776665543222 22222222110 12234444556667777665332
Q ss_pred ---HHHHHHhccC-------CChhHHHHHHHHHHHcCChHHHHHHHH----HHHHCCC---CCChhHHHHHHHHHhccCc
Q 004024 460 ---AYHAFEEIVD-------KDVISWNTMIAGYARHGFGKDALMLFE----SMKTVGI---KPDDITMVGILSACSHTGL 522 (778)
Q Consensus 460 ---A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~~~Al~l~~----~m~~~g~---~pd~~t~~~ll~a~~~~g~ 522 (778)
|..+...+.+ -|..-+...+.++++-.+.+....... .+...+- .-|..-+..++.++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 2223333221 145556666677776655544332222 2222111 1133345566667766666
Q ss_pred HHHHHHHHHHchhhcCC------CCChHHHHHHHHHHhhcCCHHH----HHHHHHhCCC------CCCHHHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGV------IPNSKHYTCMVDLLGRAGRLDE----AQNLMKNMPF------EPDAATWGALLGACR 586 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~------~p~~~~y~~lv~~l~r~g~~~e----A~~~~~~m~~------~p~~~~~~~Ll~a~~ 586 (778)
.+.+.+....+...... .-+.......+++++|--.-+. +..+.....- .-++.-..+.|+++.
T Consensus 682 ~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLs 761 (2316)
T PRK09169 682 EAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALS 761 (2316)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHH
Confidence 55443333333211111 1244555555666654333111 1222222211 123344455556666
Q ss_pred HcCChHHHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFE 603 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~ 603 (778)
+--+-+....++-.+.+
T Consensus 762 Kwp~~~~c~~a~~~La~ 778 (2316)
T PRK09169 762 KWPQEPACQQAALLLAE 778 (2316)
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 65555555555555444
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.00 E-value=80 Score=31.60 Aligned_cols=239 Identities=15% Similarity=0.234 Sum_probs=136.4
Q ss_pred CChhHHHHHhhhCCC----CCe---eehhhHHHHHHhcCChhHHHHHHHHHhhc---Ccc--cCcccccchHHHhccccc
Q 004024 354 GEITHARNLFDRMPQ----HDC---ISWAAIIAGYAQSGYSEDSLRLFIEMKRY---GER--LNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 354 g~~~~A~~~f~~m~~----~d~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~---g~~--pd~~t~~~ll~a~~~~~~ 421 (778)
.+.++|+.-|.+..+ +.. -..-.||..+.+.|++++.++.|.+|..- .+. -...+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665532 111 22345677788888888888888887541 222 233456667766666666
Q ss_pred HHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------CC-------hhHHHHHHHH
Q 004024 422 LELGKQLHGQLVKV-----GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--------KD-------VISWNTMIAG 481 (778)
Q Consensus 422 ~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--------~d-------~~~~~~li~~ 481 (778)
.+.-..+++.-.+. +-..--.+.+-|...|...|.+..-.+++.++.. .| ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66555555443221 1111112334566677777777777777776632 11 2356666778
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHH-----hccCcHHHHHHHHHHchhhcCCCCCh-----HHHHHHH
Q 004024 482 YARHGFGKDALMLFESMKTVG-IKPDDITMVGILSAC-----SHTGLVEKGTEYFYSMNRDYGVIPNS-----KHYTCMV 550 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv 550 (778)
|....+-.+-..++++...-. .-|. ....+++.-| .+.|.+++|..-|-+.-+.|.-.-++ --|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 887787777778888766522 2233 3445677777 45688998876665555555333222 2355566
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 551 DLLGRAGR----LDEAQNLMKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 551 ~~l~r~g~----~~eA~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
+++.++|- -+|| -|.+.| ......|+.+|... +. ..|++++.-
T Consensus 280 NMLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~N-dI----~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQNN-DI----IEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhcc-cH----HHHHHHHHh
Confidence 77777662 1121 144444 45677888887543 33 344555543
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.59 E-value=19 Score=30.29 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.++.-+-.+.+-|++.+..+.|.||++.+|+..|.+.++-+...-.+....|-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3344444557789999999999999999999999999998876554443355443
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.54 E-value=6.2 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+|..+...+...|+.+.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555556666666666666666666554
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.04 E-value=18 Score=30.00 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.++.=+-.+.+-|++.+..+-|.||++-+|+..|.+.++-+...-..+...|-.
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 334444455788999999999999999999999999999776443333344443
No 322
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.72 E-value=1.5e+02 Score=32.17 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVG 502 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 502 (778)
..|+.-|.-.|++.+|.+...++--| ..+.+.+++.+.-..|+...-+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34677788899999999999887654 56778888888888888777777777766655
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.23 E-value=5.8 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+|..+...|.+.|+.++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
No 324
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=71.91 E-value=1.6e+02 Score=32.23 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD 469 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~ 469 (778)
+-...+...++.|+...+.-+.+.|.+
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 444556666677776666666665544
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.59 E-value=23 Score=29.74 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 490 DALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 490 ~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+..+-++.+....+.|++....+.|.||.+.+++.-|.++|+..+.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666677899999999999999999999999999998876544 33336777764
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.81 E-value=9.2 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776654
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.80 E-value=4.3 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.0
Q ss_pred chHHHHHHHhhhcCCcchHHHHHH
Q 004024 610 GMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 610 ~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888899999998887754
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.67 E-value=3.6e+02 Score=35.91 Aligned_cols=306 Identities=14% Similarity=0.087 Sum_probs=165.7
Q ss_pred HHHHHHhccCChHHHHHHHHhhc------cccccHHHHHHHHHHhcCChhHHHHHhhh-CCCCCeeehhhHHHHHHhcCC
Q 004024 314 AMIAGYVQTKRMDMARELFEAMT------CKNVASWNTMITGYAQSGEITHARNLFDR-MPQHDCISWAAIIAGYAQSGY 386 (778)
Q Consensus 314 ~ll~~~~~~~~~~~a~~i~~~~~------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~ 386 (778)
.+..+-.+.+.+..|...++.-. ......+..+...|+.-+++|...-+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 34445566677777777776621 11223344455577777777776666552 33332 2334555667788
Q ss_pred hhHHHHHHHHHhhcCcccC-cccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHHHHH
Q 004024 387 SEDSLRLFIEMKRYGERLN-RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVG-NALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f 464 (778)
+..|...|+++.+.+ |+ ..+++.++..--..+.++...-..+...... .+...-+ +.=+.+--+.+++|.-....
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999888643 54 6677777777666666666555433332221 2222222 22233445666666665555
Q ss_pred HhccCCChhHHHHH-HHHH-HHc--CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHc-------
Q 004024 465 EEIVDKDVISWNTM-IAGY-ARH--GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSM------- 533 (778)
Q Consensus 465 ~~m~~~d~~~~~~l-i~~~-~~~--g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m------- 533 (778)
. ..+..+|.+- +.-. .+. .+.-.-.++.+.+++.-+ .=+.+|+..|.+..+.++.-.+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i--------~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI--------ENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh--------hhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 4 5566677765 3221 111 111111223333333211 2234555554433443332221
Q ss_pred ---hhhcCCCCChH------HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHH
Q 004024 534 ---NRDYGVIPNSK------HYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-----AATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 534 ---~~~~~~~p~~~------~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-----~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
....+..|+.. .|..-...=...++..|-.--+++. -..|+ ..+|-.....+|..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11223334321 1211111111111112111111111 12332 458999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+.-++.+.. -+..+.-.+...-..|+-..|..+.+.-.+.
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9888887776 4578999999999999999999988876543
No 329
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.47 E-value=2.6e+02 Score=34.24 Aligned_cols=121 Identities=11% Similarity=-0.016 Sum_probs=58.1
Q ss_pred CCChhHHHHHHHHHhcCCCHHH-HHH-HHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhC-CCCCcchHHHHHHHHh
Q 004024 244 VRDEVSWNTMITGYAQNNYLAE-AQR-LFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM-PEKNTVSWNAMIAGYV 320 (778)
Q Consensus 244 ~~d~~~~~~li~~y~~~g~~~~-A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~~~~t~~~ll~~~~ 320 (778)
.+|..+-...+.++...+..+. +.. +..-+..+|...-.+.+.++.+.|....+...+..+ ..+|...-...+.++.
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALA 832 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4555555555555555444322 222 222233455555566666666666654443333333 3345555555666666
Q ss_pred ccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhh
Q 004024 321 QTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFD 364 (778)
Q Consensus 321 ~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 364 (778)
..+..+....+...+..++..+--.-+.++.+.+.-..+...+.
T Consensus 833 ~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~ 876 (897)
T PRK13800 833 GAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALT 876 (897)
T ss_pred hccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66553333333333335566665566666655422233444443
No 330
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.28 E-value=20 Score=32.42 Aligned_cols=121 Identities=7% Similarity=0.083 Sum_probs=71.7
Q ss_pred HHhhcCCchhhhHhhhhC----CCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHH
Q 004024 70 THMRNGCCDSALHVFNSM----PRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNL 145 (778)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 145 (778)
.+.+.+.+......++.. ...+....|.|+..|++.+..+...+++... +.+-...++..+-+.|.+++|.-+
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHHHHH
Confidence 344445555554443333 3356778899999999998888888877743 335556777788888888888887
Q ss_pred HhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCC
Q 004024 146 FEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGR 200 (778)
Q Consensus 146 f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~ 200 (778)
+.++...+.. +..+...++++.|.+.+.+. +|...|..+++.|...+.
T Consensus 93 y~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 93 YSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 7776532211 11122334444444333332 356677777777765543
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.25 E-value=32 Score=30.66 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 584 ACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 584 a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+|.+.|+++.+.+..+.+++.+|+|
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3444444444554444444444444
No 332
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.39 E-value=2.6 Score=43.32 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 556 AGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.|.+++|++.+... +..|. ...+.-=.+++.+.+....|++-+..+++++|+...-|-.-.......|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46677777777655 45554 44555555677777888888888888999999988888888888888899999998888
Q ss_pred HHHhCCCccCCc
Q 004024 634 KMRDRGVKKVTG 645 (778)
Q Consensus 634 ~m~~~g~~k~~g 645 (778)
...+.+.....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 887777654433
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.41 E-value=36 Score=37.96 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 445555554443322 234455555555555555555555555443
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.34 E-value=13 Score=34.85 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC----cchHHHHHHHHH
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR----WGDVSKVRLKMR 636 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~----~~~a~~~~~~m~ 636 (778)
++.|..-++.++.++|+...++..|+|+|...|. -.+|.+.++...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777888889999999999999999998765 334555555554
No 335
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=67.19 E-value=2e+02 Score=31.49 Aligned_cols=186 Identities=8% Similarity=-0.052 Sum_probs=73.7
Q ss_pred HHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcc-cCCccHhhHH
Q 004024 144 NLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKA-NWEVVSWNSL 222 (778)
Q Consensus 144 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l 222 (778)
.+.+.+..++..+....+.++.+.+...-...+..-...++...-.+.+.++...+. + +...+...+ ..+..+-..-
T Consensus 90 ~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~d~d~~Vra~A 167 (410)
T TIGR02270 90 SVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAALTHEDALVRAAA 167 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHhcCCCHHHHHHH
Confidence 344444444444555555555555554444443333334444444444444443221 1 111111111 2222222333
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhh-CCCCCeehHHHHHHHHHhcCChHHHHHHH
Q 004024 223 MGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEE-APVKDVFTWTAMVSGYVQNGKVDEARMIF 301 (778)
Q Consensus 223 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 301 (778)
+..+.+.|..+..-.+-.-....|..+-..-+.+....|. .+|...... ...++....-.+...+...|. ++++..+
T Consensus 168 ~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L 245 (410)
T TIGR02270 168 LRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWL 245 (410)
T ss_pred HHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHH
Confidence 3333333332222222222224455555555555555555 444444333 233333333333333322222 2444444
Q ss_pred HhCCCCCcchHHHHHHHHhccCChHHHHHHHHh
Q 004024 302 DAMPEKNTVSWNAMIAGYVQTKRMDMARELFEA 334 (778)
Q Consensus 302 ~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~ 334 (778)
....+. ..+-...+.++...|+......+...
T Consensus 246 ~~ll~d-~~vr~~a~~AlG~lg~p~av~~L~~~ 277 (410)
T TIGR02270 246 RELLQA-AATRREALRAVGLVGDVEAAPWCLEA 277 (410)
T ss_pred HHHhcC-hhhHHHHHHHHHHcCCcchHHHHHHH
Confidence 444332 12444555555555555544444433
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.15 E-value=1.6e+02 Score=33.78 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc-CCcchHHHHHHHHHhCCCc
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS-GRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g~~~~a~~~~~~m~~~g~~ 641 (778)
.+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-....+++.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 36777777777777776 334444554444433 7777777777777776654
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.63 E-value=11 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=16.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+..++...|+.+.|...++++++.-|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344555566666666666666666665
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.27 E-value=54 Score=36.67 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=94.8
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYS 532 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 532 (778)
-.|+++.|..++..++++ .-+.++.-+...|..++|+++- ..||. -|.. ..+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hhhh----hhhcCcHHHHHHHHHh
Confidence 347777777766666532 2345566666777777777642 22222 2222 2357888888877655
Q ss_pred chhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 533 MNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 533 m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.. +..-|..|.++...+|++..|.+-|.... -|.+|+-.+...||.+.-..+.....+-..+|
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---- 725 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---- 725 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc----
Confidence 43 45568888888888888888888887642 36677777777787775555555555444444
Q ss_pred HHHHHHhhhcCCcchHHHHHH
Q 004024 613 VLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+--..|...|+.++..+++.
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHH
Confidence 33345667888888887764
No 339
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.23 E-value=9.7 Score=41.16 Aligned_cols=85 Identities=19% Similarity=0.083 Sum_probs=66.8
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEPDAATWGAL-LGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~L-l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
-+...+.++.|..++.+. .++|+-.+|-+. -.+..+.+++..|..-+.++++++|.....|+.-+..+.+.++..+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556677777777665 568875544333 367778899999999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 004024 630 KVRLKMR 636 (778)
Q Consensus 630 ~~~~~m~ 636 (778)
..++..+
T Consensus 93 ~~l~~~~ 99 (476)
T KOG0376|consen 93 LDLEKVK 99 (476)
T ss_pred HHHHHhh
Confidence 8887554
No 340
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.90 E-value=5.5 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=15.5
Q ss_pred cccccHHHHHHHHHHhcCChhHHH
Q 004024 337 CKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
+.|..+|+.|...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455666666666666666666664
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.82 E-value=25 Score=33.80 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=51.4
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcc
Q 004024 553 LGRAGRLDEAQNLMKNMPFEP--DAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWG 626 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~ 626 (778)
..|-|+ ++|.+.|-.+.-.| +....-..|..+....|.+++..++-+++++.+. |+..+..|+.+|...|+.+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344454 45666555553233 2333444455666678899999999999987533 5778889999999999988
Q ss_pred hHH
Q 004024 627 DVS 629 (778)
Q Consensus 627 ~a~ 629 (778)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.73 E-value=1.7e+02 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=48.8
Q ss_pred CHHHHHHHH---HHHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHhh-hcCCcchHHHHHHHHHh
Q 004024 574 DAATWGALL---GACRLYGKTELAEKAAEVIFEMEPE-NAGMYVLLSNLYA-ASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll---~a~~~~g~~~~a~~~~~~~~~l~p~-~~~~y~~L~~~y~-~~g~~~~a~~~~~~m~~ 637 (778)
|-..|.+|. ..+.+.|-...|.+..+-++.++|. ||-.-.+.++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444555553 5667889999999999999999999 8777777778777 56777777777766554
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.61 E-value=64 Score=32.27 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=96.6
Q ss_pred cCCCHHHHHHHHhhCCCC----C---eehHHHHHHHHHhcCChHHHHHHHHhCCCC---------CcchHHHHHHHHhcc
Q 004024 259 QNNYLAEAQRLFEEAPVK----D---VFTWTAMVSGYVQNGKVDEARMIFDAMPEK---------NTVSWNAMIAGYVQT 322 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~----d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~t~~~ll~~~~~~ 322 (778)
+...+++|..-|++..+- . -.+...||..+.+.|++++.++.|.+|..- +..+.+++++-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445778888888776532 1 123457888899999999999888888631 566778888877777
Q ss_pred CChHHHHHHHHhhc-----ccccc----HHHHHHHHHHhcCChhHHHHHhhhCCCC--------C-------eeehhhHH
Q 004024 323 KRMDMARELFEAMT-----CKNVA----SWNTMITGYAQSGEITHARNLFDRMPQH--------D-------CISWAAII 378 (778)
Q Consensus 323 ~~~~~a~~i~~~~~-----~~~~~----~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------d-------~~~~~~li 378 (778)
.+.+.-...++.-. ..|.. +-+-|...|...|.+..-.+++.++.+. | ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77666655555433 22222 3345667777777777777777766421 1 13455556
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 379 AGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 379 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
..|....+-..-..+|.+.....-.........++.-|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECG 237 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECG 237 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcC
Confidence 666666666666666665543222222223334455554
No 344
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.35 E-value=1e+02 Score=27.52 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
..-+......|+-++-.+++.++... -+|++.....+.+||.+.|+..++-+++....++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445555666666666666665532 3555556666666666666666666666665543
No 345
>PF15161 Neuropep_like: Neuropeptide-like
Probab=64.87 E-value=2.3 Score=30.57 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=12.2
Q ss_pred ecccccCccchhhHHhhh
Q 004024 733 KNLRVCEDCHNAIKHISK 750 (778)
Q Consensus 733 knlr~c~dch~~~k~~s~ 750 (778)
---|-|.|||.|- |+-+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3468999999764 5543
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.57 E-value=33 Score=32.24 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
+++|...|+++.+.+|+| ..|..-..+. ++|-++...+.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 567788888888899998 4444333332 3566666666665543
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.54 E-value=2.8e+02 Score=32.27 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHhhhcCCcchHHHHHHHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEME---PENA-GMY-----VLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~---p~~~-~~y-----~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
-++++.-.-.|+..+........+.+- |+.. ..+ ..+.+.|...|+.++|...+....
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 344444444677776666555555543 3222 222 245556778899999888877654
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.11 E-value=69 Score=32.67 Aligned_cols=73 Identities=11% Similarity=0.192 Sum_probs=56.8
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-P---FEPDAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
.++.+-+...++-.++..+..+++..+++.+++.+-.++++.. + ..-|...|..++..-...||.+...++.+
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3444445566678888889999999999999999999999876 2 23467899999999999999766655443
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.07 E-value=1.1e+02 Score=27.84 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRL 587 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~ 587 (778)
.++.+++..++..|. -+.|+ .+.-.+-+-++.+.|+|+||..++++..-.+ ....-.+|+.-|..
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 444555555555443 22332 1222233445667788888888888774333 33333455544443
No 350
>PRK09169 hypothetical protein; Validated
Probab=63.48 E-value=4.9e+02 Score=34.77 Aligned_cols=477 Identities=9% Similarity=0.018 Sum_probs=260.4
Q ss_pred cchHHHHHHHHHcCCChhHH--------HHHHhhC-CCCCcchHHHHHHHHHcCCChHHHHHHHHhc---c--------c
Q 004024 123 LVSWNVMISGYVRNKSLSAA--------RNLFEMM-PKRDVVSWNTMLSGYAQNGYADAARRIFDRM---L--------E 182 (778)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A--------~~~f~~m-~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m---~--------~ 182 (778)
...+..|.+.++|.-+-... .+++... ..-|......++++++|-.+...+...-..+ + .
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 34555666666665543322 2233322 1346777888999999987766554443333 1 1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHH----hccc-------CCccHhhHHHHHHHhcCChhHHHHHHhhCC--------
Q 004024 183 KNEISWNGLLAAYVQNGRIEEACMLFE----SKAN-------WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP-------- 243 (778)
Q Consensus 183 ~d~~t~~~ll~~~~~~g~~~~a~~~~~----~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------- 243 (778)
-|......+++++++--+.......-. +... .+......++++++|.-+-+.+...-..+-
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 245556777888887665544433322 2211 133456778899998776655544332221
Q ss_pred ---CCChhHHHHHHHHHhcCCCHHHHHHHHh----hC----C---CCCeehHHHHHHHHHhcCChHHH----HHHHHhCC
Q 004024 244 ---VRDEVSWNTMITGYAQNNYLAEAQRLFE----EA----P---VKDVFTWTAMVSGYVQNGKVDEA----RMIFDAMP 305 (778)
Q Consensus 244 ---~~d~~~~~~li~~y~~~g~~~~A~~~f~----~m----~---~~d~~~~~~li~~~~~~g~~~~A----~~l~~~m~ 305 (778)
.-|..-....+++++|...-+.+...-. ++ . .-|..-....+.++++-.+.+.+ ..+-..+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1244455667788888765443322221 11 1 11344455667778877665543 22333332
Q ss_pred C-------CCcchHHHHHHHHhccCChHHHHH----HHHhhc-------cccccHHHHHHHHHHhcCChhHHHHHhhhC-
Q 004024 306 E-------KNTVSWNAMIAGYVQTKRMDMARE----LFEAMT-------CKNVASWNTMITGYAQSGEITHARNLFDRM- 366 (778)
Q Consensus 306 ~-------~~~~t~~~ll~~~~~~~~~~~a~~----i~~~~~-------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m- 366 (778)
. -|..-....++++++..+-+.... +...+. .-|..-....+++++|-+.-+.+.+....+
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1 177788889999999877543322 222222 234445566778888887766444443322
Q ss_pred ---CC-------CCeeehhhHHHHHHhcCChh----HHHHHHHHHhhc---CcccCcccccchHHHhcccccHHHHHHHH
Q 004024 367 ---PQ-------HDCISWAAIIAGYAQSGYSE----DSLRLFIEMKRY---GERLNRSPFTSVLSTCANLASLELGKQLH 429 (778)
Q Consensus 367 ---~~-------~d~~~~~~li~~~~~~g~~~----~Al~l~~~m~~~---g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 429 (778)
.. -|..-....+.++.+-++.+ .+..+...+... .-.-+..-+..++.|+++.+..+.....-
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 11 13334556677777766543 233444444321 11234556778899999888766654433
Q ss_pred HHH----HHc---CCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhccC-------CChhHHHHHHHHHHHcCChH--
Q 004024 430 GQL----VKV---GFEAGCFVGNALLVMYCKCGSVEE----AYHAFEEIVD-------KDVISWNTMIAGYARHGFGK-- 489 (778)
Q Consensus 430 ~~~----~~~---g~~~~~~~~~~Li~~y~k~g~~~~----A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~~-- 489 (778)
..+ ... --..+..-....+.+++|-++-+. |..++..+.. -|...+...+.++++-+...
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 322 211 112345555667788888776433 3334444322 25566777888888877542
Q ss_pred --HHHHHHHHHHHCC---CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCC------CCChHHHHHHHHHHhhcCC
Q 004024 490 --DALMLFESMKTVG---IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGV------IPNSKHYTCMVDLLGRAGR 558 (778)
Q Consensus 490 --~Al~l~~~m~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~------~p~~~~y~~lv~~l~r~g~ 558 (778)
.|..+.....+.. -.-|..-+...+.|+++-...+........+.....- .-+..+....++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 3444555544321 1225566788899999988877666554444332111 1256778888899988877
Q ss_pred HHHHHH----HHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 559 LDEAQN----LMKNMPF------EPDAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 559 ~~eA~~----~~~~m~~------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
-+.+.+ +...+.. .-|+.-...+++++.+--+-+..+.+.+
T Consensus 682 ~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~ 732 (2316)
T PRK09169 682 EAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAE 732 (2316)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHH
Confidence 554322 2222211 1244455566666666555444444333
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.42 E-value=29 Score=25.40 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCC
Q 004024 612 YVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDG 686 (778)
Q Consensus 612 y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~g 686 (778)
...|+-.+.+.|++++|.+..+.+.+ .+|...+.....+.+.++|++.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 45677788999999999999888876 24556666666667778888777
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.54 E-value=1.7e+02 Score=29.01 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHchhhcCCCC-ChHHHHHHHH---HHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHHc-
Q 004024 522 LVEKGTEYFYSMNRDYGVIP-NSKHYTCMVD---LLGRAGRLDEAQNLMKNM---PFEPDAATWGA---LL--GACRLY- 588 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~---~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~---Ll--~a~~~~- 588 (778)
+.++|+..|+..-.-|..+- +...--|++. .-+..|++.+|.+++++. .+..+..-|.. ++ +.|...
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 34445555544433222221 2222234443 345678888999998876 23333444432 33 345554
Q ss_pred CChHHHHHHHHHHHhcCCCCCc--hHHHHHHH
Q 004024 589 GKTELAEKAAEVIFEMEPENAG--MYVLLSNL 618 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~--~y~~L~~~ 618 (778)
.|.-.+..++++..+++|.-.+ -+..|-.+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 7888899999999999997443 34444444
No 353
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=62.10 E-value=1.4e+02 Score=27.96 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=73.3
Q ss_pred hhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 004024 84 FNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSG 163 (778)
Q Consensus 84 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~ 163 (778)
......++...+..+|+.+.+.|++.....+...-.-+|...-...+-.+.. ....+.++=-.|..+=...+..++..
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~~iiev 98 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYEEIIEV 98 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3445567778899999999999998888777765554444433333322222 23334443333333322345667778
Q ss_pred HHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004024 164 YAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 164 ~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
+...|++-+|++..+....-+...-..++.+..+.++...=-.++
T Consensus 99 LL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 99 LLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887765444555555666666655544433333
No 354
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=61.98 E-value=16 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=10.2
Q ss_pred HHHHHHHhhhcCCcchHHHHHHH
Q 004024 612 YVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 612 y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
+..|+.+|...|++++|.++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHH
Confidence 34444444444444444444433
No 355
>PF15469 Sec5: Exocyst complex component Sec5
Probab=61.98 E-value=1.2e+02 Score=28.75 Aligned_cols=118 Identities=11% Similarity=0.203 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLL 553 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 553 (778)
|..++..-.+......++.++++..- -+..-.-|.-|...|+++.+...|......++-.. ....+..
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~----- 128 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK----- 128 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence 33344444444445555555555433 12233556677778888888877777655432221 1111111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
-++++...+++.. ..+|..|... ....+....+.+.+++|+|++..++..
T Consensus 129 ----v~~eve~ii~~~r----~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 129 ----VWSEVEKIIEEFR----EKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred ----HHHHHHHHHHHHH----HHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 2344444443331 2234433332 156677788888888888765444443
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.97 E-value=96 Score=26.44 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35566666666665553 233333334445667788888854444455678888876644 467777777777777766
Q ss_pred CCCCCChhHH
Q 004024 501 VGIKPDDITM 510 (778)
Q Consensus 501 ~g~~pd~~t~ 510 (778)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3443444
No 357
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.92 E-value=1.3e+02 Score=29.69 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=56.7
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 475 WNTMIAGYA--RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 475 ~~~li~~~~--~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
|...+.|+. -++++++|++++-.- .+.|+... -++.++...|..+.|..++..+... -.+.+.-..+..+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH
Confidence 344455543 456667777666321 12222211 3556666677777777777665321 1122223333333
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG 589 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g 589 (778)
..+|.+.||..+.++.+-+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 455788888888777653222446777776666544
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.61 E-value=15 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~ 465 (778)
..|...|...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666677776666654
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.68 E-value=1.7e+02 Score=28.59 Aligned_cols=126 Identities=19% Similarity=0.138 Sum_probs=63.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhh-cCCCCChHHHHHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRD-YGVIPNSKHYTCMVDL 552 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y~~lv~~ 552 (778)
.+..|+.+.+.+...+|+.+.++-.+ -+|.. -+-..++.-++-.|++++|..-++-..+- -...+....|..+|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777766665 35543 34445556667777777776555543210 0112233444444432
Q ss_pred HhhcCCHHHHHH-HHHh--CCCCC--CHHHHHH-HHHHHHHc--CChHHHHHHHHHHHhcCCCCC
Q 004024 553 LGRAGRLDEAQN-LMKN--MPFEP--DAATWGA-LLGACRLY--GKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 553 l~r~g~~~eA~~-~~~~--m~~~p--~~~~~~~-Ll~a~~~~--g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+.+.. +|.. .|--+ ....|-. |+.+...| |.-+......+..++-.|..+
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 12221 2211 12111 2345544 44444433 345556667777777766653
No 360
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=60.23 E-value=2.1e+02 Score=29.37 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 474 SWNTMIAGYARHGFG---KDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 474 ~~~~li~~~~~~g~~---~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
+...++.+|...+.. ++|..+.+.+... -|| ...|..-+..+.+.++.++..+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555443 3444455555442 233 334444555555566666666666666654
No 361
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=72 Score=31.52 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=61.3
Q ss_pred CHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 558 RLDEAQNLMKN-MPFEPDAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 558 ~~~eA~~~~~~-m~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
++++|..-+.+ +-+.|... -|..=+-.+.+..+.+..+.--.+++++.|+.......|+........+++|..++.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444443333 34677764 44455555566788999999999999999999999999999999999999999998877
Q ss_pred Hh
Q 004024 636 RD 637 (778)
Q Consensus 636 ~~ 637 (778)
.+
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 54
No 362
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=59.67 E-value=22 Score=31.76 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=51.3
Q ss_pred EEEeCCEEEEEEeCCC-CCcchHHHHHHHHHHHHHHHhCCcccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCCC
Q 004024 648 WLEVQNKVHTFSVGDT-LHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAG 726 (778)
Q Consensus 648 ~i~~~~~~~~f~~~d~-~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~~ 726 (778)
|+.-.+..-.|+.||- .+|++.++-..|++|.++.... +..++.-|+++ .+.||--||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~----~v~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY----TWQVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC----ceEEEEEECCC----------CHHHHHHcCCccCC--
Confidence 4444455567999995 6899999999999999877311 12344556653 46799999999999
Q ss_pred CcEEEEeccc
Q 004024 727 RPIRVMKNLR 736 (778)
Q Consensus 727 ~~i~i~knlr 736 (778)
++-++||=+
T Consensus 94 -TLl~FkdGk 102 (132)
T PRK11509 94 -ATLVFTGGN 102 (132)
T ss_pred -EEEEEECCE
Confidence 566666644
No 363
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.59 E-value=1.8e+02 Score=28.43 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=47.8
Q ss_pred CChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee-ehhhHHHH--HHhcCChhHHHHHHHH
Q 004024 323 KRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI-SWAAIIAG--YAQSGYSEDSLRLFIE 396 (778)
Q Consensus 323 ~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~-~~~~li~~--~~~~g~~~~Al~l~~~ 396 (778)
|-...|+--|.+.. +.-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=.| +--.|++.-|.+-|.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 44444444444444 445677888888888889999999999888776542 22222222 2234777777766655
Q ss_pred Hhhc
Q 004024 397 MKRY 400 (778)
Q Consensus 397 m~~~ 400 (778)
.-+.
T Consensus 159 fYQ~ 162 (297)
T COG4785 159 FYQD 162 (297)
T ss_pred HHhc
Confidence 5443
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.47 E-value=63 Score=35.03 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=75.0
Q ss_pred cCChHHHH-HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 485 HGFGKDAL-MLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 485 ~g~~~~Al-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
.|+...|- ++|..+....-.|+.+-..+++ .++.|.++.+.+.+....+ -+.....+..|++.-+-..|++++|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45554443 3555555544566665554443 5678888888887776543 33345666778888888888888888
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 564 NLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 564 ~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
.+-..| .++ ++.+...-...-...|-++++...+++++.+.|.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 887776 222 2333333334445667778888888888888754
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.78 E-value=25 Score=34.06 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
.-+..+.+.+++++|+.+.+.- .-+| |...-..|+.-++..|+.++|..-.+-+-+++|++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3455667778888887766543 3345 3455566777778888888888888877788887643
No 366
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.60 E-value=94 Score=34.68 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVDK--DVI---SWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~~--d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999998542 122 233333444444334444445555444
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.36 E-value=3e+02 Score=30.58 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
-++++.++..-...-.+.+-.+|.. .+-..+-.++..|.++ ..++-..+++++.+ ..-|.+.+.-.|.-+...++
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHHhc
Confidence 3344444444444434444444432 2333444455555554 33444455555544 33344444444444444455
Q ss_pred HHHHHHHHHHch
Q 004024 523 VEKGTEYFYSMN 534 (778)
Q Consensus 523 ~~~a~~~~~~m~ 534 (778)
.+.+..+|..+.
T Consensus 147 ~sk~a~~f~Ka~ 158 (711)
T COG1747 147 KSKAAEFFGKAL 158 (711)
T ss_pred hhhHHHHHHHHH
Confidence 555555554443
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.43 E-value=1.2e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=25.1
Q ss_pred HHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhC
Q 004024 256 GYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304 (778)
Q Consensus 256 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 304 (778)
.+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 34456666666666666666666666555443 334444444333333
No 369
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.90 E-value=1.8e+02 Score=27.34 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=80.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChH-HHHH--HHHHHhhcC
Q 004024 482 YARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK-HYTC--MVDLLGRAG 557 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~--lv~~l~r~g 557 (778)
+++.|..++|+.-|.++.+.|...=++ .-.-........|+...|...|+++-.+. -.|.+. -..- -..+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 467788888888888888876543222 12222334567788888888888887652 233222 1111 123566788
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 558 RLDEAQNLMKNMPFEPD---AATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 558 ~~~eA~~~~~~m~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.+++....++.+..+.+ ...-.+|.-+-.+.|++..|...|+.+.+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888877632222 33556777778889999999999998876
No 370
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=54.18 E-value=31 Score=29.09 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=52.2
Q ss_pred hhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcCeEEEEecCC
Q 004024 704 EHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNN 762 (778)
Q Consensus 704 ~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 762 (778)
++.|.-|.|.-++--=-.+.-+|..+-|.--++-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 67789999999887666666669999999999999999999999999999999998854
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.05 E-value=24 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666677777777777766654
No 372
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.99 E-value=3e+02 Score=31.65 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..|..-+.-+...++.. ....+++...---.+...-.-++..|...|..+.+.++.+.+-.+. -....|..-+.-
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~ 447 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSW 447 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHH
Confidence 34555444444333211 3334444433222345566778888999999988888877664430 012233334444
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCchHHHHHHHh--hhcCCcchH
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE--MEPENAGMYVLLSNLY--AASGRWGDV 628 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~y~~L~~~y--~~~g~~~~a 628 (778)
+.|+|+.+..- .++|. ++..|..+|... ...+.+.+.. +-.+.-..|..+-..| ...|++.+|
T Consensus 448 ~~ra~d~~~v~-----------~i~~~-ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~A 514 (566)
T PF07575_consen 448 FIRAGDYSLVT-----------RIADR-LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREA 514 (566)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHCCCHHHHH-----------HHHHH-HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 44444443322 22332 334444444321 1111111111 0011123333444443 345888888
Q ss_pred HHHHHHHHhCCCccCCceeEEEeCCEE
Q 004024 629 SKVRLKMRDRGVKKVTGYSWLEVQNKV 655 (778)
Q Consensus 629 ~~~~~~m~~~g~~k~~g~s~i~~~~~~ 655 (778)
.+..-.+-+..+ .|..-|..+=.+.
T Consensus 515 a~~Lv~Ll~~~~--~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 515 ASLLVSLLKSPI--APKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHCCCC--CcHHHHHHHHHHH
Confidence 776544443322 4555665544433
No 373
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.87 E-value=2.1e+02 Score=27.39 Aligned_cols=94 Identities=13% Similarity=0.265 Sum_probs=58.8
Q ss_pred hhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHc--------
Q 004024 364 DRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV-------- 435 (778)
Q Consensus 364 ~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------- 435 (778)
+.-+++-.+.|......-++.-+.+++-+.|-- +.| .+++-.|.+.-++.+|+.+.+.+-+.
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG--RiG--------iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG--RIG--------ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhhh--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 333444456666666666665555554433311 111 35666677777888888877776543
Q ss_pred ------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 436 ------GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 436 ------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
+..+--.+.|.-..++.++|++|.|..++++-
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 12344566777888899999999999888753
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.54 E-value=92 Score=30.02 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhc--CCCCChHHHHHHHHHHhhcCCHHHH
Q 004024 489 KDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY--GVIPNSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~y~~lv~~l~r~g~~~eA 562 (778)
++|++.|-++...+.- +....-..|..+-...+.+++.+++....+-+ +-.+|++.+..|+.++-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455555555444322 22222222333333444444444444433221 1133444455555555555554444
No 375
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.21 E-value=34 Score=22.65 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhcCCCC
Q 004024 577 TWGALLGACRLYGKTELAEKA--AEVIFEMEPEN 608 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~--~~~~~~l~p~~ 608 (778)
-|-++...+...|+.+.|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 356677778888888999888 44777777764
No 376
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.80 E-value=4.9e+02 Score=31.09 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=96.1
Q ss_pred hcCCHHHHHHHHHhcc----CCC-------hhHHHHHHHHHH-HcCChHHHHHHHHHHHHCC----CCCChhHHHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIV----DKD-------VISWNTMIAGYA-RHGFGKDALMLFESMKTVG----IKPDDITMVGILSA 516 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~----~~d-------~~~~~~li~~~~-~~g~~~~Al~l~~~m~~~g----~~pd~~t~~~ll~a 516 (778)
-..++++|..+..+.. .++ ...|+++-.-.+ ..|++++|+++.+.....= ..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777777766542 222 125666654333 5677888888877766531 12233444555556
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH-----HHHhhcCCHHHHH--HHHHhC-----CCCCC----HHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV-----DLLGRAGRLDEAQ--NLMKNM-----PFEPD----AATWGA 580 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-----~~l~r~g~~~eA~--~~~~~m-----~~~p~----~~~~~~ 580 (778)
..-.|+.++|..+.....+. .-.-++.+|...+ ..+-..|....|. ..++.. +-+|- ..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 66678888887766554332 1122334443332 3345566333222 222211 11222 234444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc----CCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEM----EPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l----~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
+++++.+ .+.++.-+.+.+++ .|..- ..+..|+.++...|+.++|......+..-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4554433 44444444444442 23321 1223788888888999988888777765443
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.76 E-value=92 Score=33.83 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=93.5
Q ss_pred ccCcHHHHH-HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 004024 519 HTGLVEKGT-EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 519 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
..|++-.|- ++|..+ +.+.-.|+.. ..........|.++.|+..+.... +.....+...++......|..+.|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345555554 444444 4445555543 333445667899999999998773 3445667788888888889999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCC
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDT 663 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 663 (778)
..++.++.-+-+++.....-+-.--..|-.|++.-.++..-.-..... ..|+..-.....|-.|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~--~g~v~~~~~~~~~~~~~~ 443 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ--SGWVNFLSSTQYFNDGNA 443 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc--ccceeeeccceeccCcch
Confidence 999999987766665554444444456778888888887765444333 348777666777766653
No 378
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.25 E-value=80 Score=32.45 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=68.0
Q ss_pred HhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCC---------CCcchHHHHHHHHHcCCChhHHHHHHhhCC--
Q 004024 82 HVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ---------RDLVSWNVMISGYVRNKSLSAARNLFEMMP-- 150 (778)
Q Consensus 82 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-- 150 (778)
.-|..+...++.+-..++..-....+++++...+-++.. ...++|-.++.-| ++++++.+...=.
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQY 129 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchh
Confidence 456666666666666677666667788888888777652 2334444444443 6778887776543
Q ss_pred --CCCcchHHHHHHHHHcCCChHHHHHHHHhcc
Q 004024 151 --KRDVVSWNTMLSGYAQNGYADAARRIFDRML 181 (778)
Q Consensus 151 --~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 181 (778)
-||.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3889999999999999999999988877776
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.16 E-value=40 Score=37.50 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
.|..++.+.|...+|-.++.+. .+ ...+.++-++..++....|++.|.+.++.+++++|+++..-..|-.+-
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 3445555566666666665443 22 233566777888888899999999999999999999988777665543
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.71 E-value=70 Score=30.58 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHhccCChHHHHHHHHhhc--cccc----cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHH-----HHHHhcC
Q 004024 317 AGYVQTKRMDMARELFEAMT--CKNV----ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAII-----AGYAQSG 385 (778)
Q Consensus 317 ~~~~~~~~~~~a~~i~~~~~--~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li-----~~~~~~g 385 (778)
..+...+++++|...+.... +.|. .+--.|.......|.+++|...++...+++ |.+++ ..+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcC
Confidence 34455555666655555554 1111 111234456667788888888888776654 44432 3577788
Q ss_pred ChhHHHHHHHHHhhcC
Q 004024 386 YSEDSLRLFIEMKRYG 401 (778)
Q Consensus 386 ~~~~Al~l~~~m~~~g 401 (778)
+.++|..-|.+.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888777654
No 381
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.01 E-value=2.7e+02 Score=27.61 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=16.8
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC
Q 004024 586 RLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...+++.+|..+++++..-.-+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34578888999999887655444
No 382
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.85 E-value=22 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=12.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+..+|.+.|+.++|.+.|++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555666666666665554
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=48.88 E-value=2.3e+02 Score=28.02 Aligned_cols=115 Identities=16% Similarity=0.260 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHhccCCChhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVISW--NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYF 530 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~~~--~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 530 (778)
..+++++|.+.+- +|.+..| .-++.++..+|+.+.|+.+++.+.-..-.++. ...++.+ ...|.+.||+.+-
T Consensus 90 D~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~--~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA--LTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH--HHHHHHH-HHcCCHHHHHHHH
Confidence 3477888877773 3433222 24788888899999999999875432222222 2222333 4558999999887
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT 577 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~ 577 (778)
+..... -....+..++..+.....-....+.+-.+|+.+....
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 765432 1134666777666544433344555556787766543
No 384
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.73 E-value=3.3e+02 Score=28.30 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=90.7
Q ss_pred CHHHHHHHHHhc--cCCChhHHHHHHHHHHHc----C-ChHHHHHHHHH---------HHHCCCCCC--h----hHHHHH
Q 004024 456 SVEEAYHAFEEI--VDKDVISWNTMIAGYARH----G-FGKDALMLFES---------MKTVGIKPD--D----ITMVGI 513 (778)
Q Consensus 456 ~~~~A~~~f~~m--~~~d~~~~~~li~~~~~~----g-~~~~Al~l~~~---------m~~~g~~pd--~----~t~~~l 513 (778)
.++.+.++...+ .+++...|..++..+..- . ..+.....|+. +.+.|..++ . ..+...
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 356667777766 346777787776554322 1 11111111222 223355554 2 222222
Q ss_pred -H-HHHhccCcHHHHHHHHHHchhhcC---CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004024 514 -L-SACSHTGLVEKGTEYFYSMNRDYG---VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLY 588 (778)
Q Consensus 514 -l-~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~ 588 (778)
+ .+|.+.+-++++.+.|........ ...++.....+.....+.|.-++-..+++...-.++...-..++.+....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 2 244344457888899988876311 13456667777777888888776666666655466788888999998889
Q ss_pred CChHHHHHHHHHHHhcC-CCCCchHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFEME-PENAGMYVLLSNLY 619 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~-p~~~~~y~~L~~~y 619 (778)
.+.+.-.++++.++.-+ -.....+..+..++
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHh
Confidence 99999999999988832 12223445554443
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.64 E-value=54 Score=26.75 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=23.0
Q ss_pred cCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHH
Q 004024 259 QNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEA 297 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 297 (778)
..|+.+.|++++..++ +.+-.+...++++-+.|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5666666666666666554433
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.58 E-value=1.3e+02 Score=27.00 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHhccC---cHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 504 KPDDITMVGILSACSHTG---LVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 504 ~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
.|...|--.+..++.++. ++.+|+.+++...+ .-.|+ .+..-.|.-++.|.|+++++.++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344444444445555543 35566666666654 11221 111122334556677777777666544
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.13 E-value=5.1e+02 Score=30.29 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHH
Q 004024 130 ISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIE 202 (778)
Q Consensus 130 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~ 202 (778)
+..+.+.+++...+.++.. +..+...-.....+....|+.++|......+- .......+.+++.+.+.|.+.
T Consensus 106 l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 3445566777766663322 23344444556666677777766665555542 233555666666666555443
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.36 E-value=2.2e+02 Score=25.88 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---------CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---------KDVISWNTMIAGYARHGF-GKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~-~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
|+++.-...-+++.....+++.+.. .+-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4454444444555544444444311 244456666666544433 233455666666555566666666666
Q ss_pred HHHhcc
Q 004024 515 SACSHT 520 (778)
Q Consensus 515 ~a~~~~ 520 (778)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665543
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.09 E-value=2.9e+02 Score=29.84 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=58.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHH--hccCcHHHHHHHHHHchhhcCC-CCChHHHHHHHHHHhhcC
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPDDI--TMVGILSAC--SHTGLVEKGTEYFYSMNRDYGV-IPNSKHYTCMVDLLGRAG 557 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd~~--t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~lv~~l~r~g 557 (778)
..++++..|.++|+++... +.++.. .+..+..+| -..-+.++|.+.|+........ .-...+...++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3667888888888888776 555443 222233333 2456677777777766543111 011223333333332222
Q ss_pred CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH--cCChHHHHHHHHHHHhc
Q 004024 558 RLDEAQNLMKNMPFEPD-AATWGALLGACRL--YGKTELAEKAAEVIFEM 604 (778)
Q Consensus 558 ~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~--~g~~~~a~~~~~~~~~l 604 (778)
.+....+....-+-+|. ..+..-+.+|-++ .|+++.|...+-+++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22222222221111222 2234444455543 57788777766666663
No 390
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.95 E-value=1.5e+02 Score=29.61 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHh-----cCCCCCchHHHHHH----HhhhcCCcchHHHHHHHHHhCCC
Q 004024 591 TELAEKAAEVIFE-----MEPENAGMYVLLSN----LYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 591 ~~~a~~~~~~~~~-----l~p~~~~~y~~L~~----~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.+.|..+++++.+ +.|.+|...-+..| .|--.|+.++|.++-+..-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3667777777765 56777654433332 34567999999998777655444
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.57 E-value=31 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877776665544
No 392
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.41 E-value=29 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..+++.++.+|+|...-..|+..|...|++++|.+.+-.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555566666666666666666667777776666544443
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.97 E-value=1.4e+02 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999998877
No 394
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.82 E-value=3.7e+02 Score=27.96 Aligned_cols=80 Identities=10% Similarity=-0.045 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGF----EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
.+.+.+.+......+. ..++....++.....+.|..+.-..+++.... ++......++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455555555444311 23344444455555555555544444444433 344555556666666666555555555
Q ss_pred HHHHC
Q 004024 497 SMKTV 501 (778)
Q Consensus 497 ~m~~~ 501 (778)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55553
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.40 E-value=1.8e+02 Score=26.51 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-------ChhHHHHHHHHHhccCc-HHHHHHHHHHchhhcCCCCChHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKP-------DDITMVGILSACSHTGL-VEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-------d~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
..|.++.-.+..+...-.+.+++.+.. +.| |..+|..++.+.+.+.. .--+..+|+-|++ .+.+++...
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~d 117 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHH
Confidence 356677776777777777777777754 333 34568999999988877 5667888888877 478889999
Q ss_pred HHHHHHHHhhc
Q 004024 546 YTCMVDLLGRA 556 (778)
Q Consensus 546 y~~lv~~l~r~ 556 (778)
|.+|+....|-
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 99999876554
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.17 E-value=1.1e+02 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHhcccCCccHhhHHHHHHHh
Q 004024 199 GRIEEACMLFESKANWEVVSWNSLMGGFVK 228 (778)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 228 (778)
|+.+.|++++.... .+.-.|...++++-.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLre 78 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRE 78 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHH
Confidence 33333444444333 333333333333333
No 397
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.90 E-value=2.5e+02 Score=27.96 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=60.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHHH--------HH---HHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 550 VDLLGRAGRLDEAQNLMKNM---------PFEPDAATWGAL--------LG---ACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m---------~~~p~~~~~~~L--------l~---a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.+-+.+.|+++||..-+.+. .-+|...-|--| ++ .+...|++-++++-...++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34556777877777655443 235555555332 22 23456788888888888999999999
Q ss_pred chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 610 GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 610 ~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+|..-+.+.+..=+.++|..-++...+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999998888777777777776666554
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.17 E-value=2.1e+02 Score=29.06 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=53.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh-
Q 004024 479 IAGYARHGFGKDALMLFESMKT--VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR- 555 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r- 555 (778)
|.+++..|++.+++...-+--+ +.+.|...-. -|--|++.|......++-..-..+-+ .-+..-|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6778888888887765543322 1133333222 23346777877777776666554422 1223347777776654
Q ss_pred ----cCCHHHHHHHHHhC
Q 004024 556 ----AGRLDEAQNLMKNM 569 (778)
Q Consensus 556 ----~g~~~eA~~~~~~m 569 (778)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 399
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=42.10 E-value=29 Score=37.71 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCcccCCCcccc-ccchhhHhhhhhhhhHHHHHHHhh----hCCCCCCcEEEEecccccCccchhh
Q 004024 671 IYAYLEELEFKLKQDGFVYSTKLVLH-DVGEEEKEHMLRYHSEKLAVAYGI----LSIPAGRPIRVMKNLRVCEDCHNAI 745 (778)
Q Consensus 671 i~~~l~~l~~~~~~~gy~p~~~~~~~-~~~~~~k~~~l~~hse~la~~~gl----~~~~~~~~i~i~knlr~c~dch~~~ 745 (778)
....-++....+.+.||.| ...+.- ...+|.....|..+-.+ ..+||. ++-.+..|+.++=-+--|.+ +-++
T Consensus 274 ~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g-~p~~ 350 (405)
T COG1488 274 PRELSEKVRAHLDKLGYDP-VKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG-KPVA 350 (405)
T ss_pred HHHHHHHHHHHHHHcCCCc-eEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC-ccce
Confidence 3445566778888999999 444444 45666667777777777 889985 34445567877666655655 8888
Q ss_pred HHhhhhcCeEEEEecC
Q 004024 746 KHISKIVGRLIILRDN 761 (778)
Q Consensus 746 k~~s~~~~r~i~~rd~ 761 (778)
| ||+--|+.-+.|..
T Consensus 351 K-is~~Pgkk~~~r~~ 365 (405)
T COG1488 351 K-ISKNPGKKQVYRSA 365 (405)
T ss_pred e-ecCCCccceeecch
Confidence 8 78888888887765
No 400
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.79 E-value=1e+02 Score=30.30 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH-------HHHhcC--CC----CCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAE-------VIFEME--PE----NAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~-------~~~~l~--p~----~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.++--+.+.|+..|+.+.....++ ++++.+ |. ......+++.++.+.|+.++|.+.+..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 4456667788888888555444444 444433 22 234567899999999999999999987765
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.97 E-value=4.1e+02 Score=30.91 Aligned_cols=28 Identities=7% Similarity=0.245 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhc---cCcHHHHHHHHHHchh
Q 004024 508 ITMVGILSACSH---TGLVEKGTEYFYSMNR 535 (778)
Q Consensus 508 ~t~~~ll~a~~~---~g~~~~a~~~~~~m~~ 535 (778)
..|..++..|.+ ..+..+|.+||--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 556666666654 3566777777766643
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=4.3e+02 Score=31.85 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=15.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
|..|+.+|...|..++|++++.+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH
Confidence 566666666666666666666555
No 403
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.81 E-value=7.1e+02 Score=29.82 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhcc--cCCcchHHHHHHHHHhcCCHHHHHHHHHhccc
Q 004024 169 YADAARRIFDRML--EKNEISWNGLLAAYVQNGRIEEACMLFESKAN 213 (778)
Q Consensus 169 ~~~~A~~~~~~m~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (778)
+.+|+.++|+.-. +-|..+.+.+ |-+.+-|-.|+++..-..+
T Consensus 195 ~~eE~~~fl~~~~~l~Ld~~~~~~L---~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 195 DTEEAAAFLNDRGSLPLDAADLKAL---YDRTEGWAAALQLIALALR 238 (894)
T ss_pred ChHHHHHHHHHcCCCCCChHHHHHH---HhhcccHHHHHHHHHHHcc
Confidence 4567777777665 3344444433 3455566666666655544
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.46 E-value=3.5e+02 Score=28.10 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.|.++..++.|.+|.-|.+..-+
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHH
Confidence 46777788889999877655443
No 405
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=7.9e+02 Score=29.78 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.3
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhh
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKR 399 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 399 (778)
-|..||.-|...|..++|++++++...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377889999999999999999988865
No 406
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.69 E-value=60 Score=31.10 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCc
Q 004024 188 WNGLLAAYVQNGRIEEACMLFESKANWEV 216 (778)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (778)
|..-..+..+.+.++.|+.--...++.++
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 44444555566666666665555555554
No 407
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.67 E-value=5.9e+02 Score=28.31 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCChhHHH-HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHH
Q 004024 503 IKPDDITMV-GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL---GRAGRLDEAQNLMKNM--PFEPDAA 576 (778)
Q Consensus 503 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l---~r~g~~~eA~~~~~~m--~~~p~~~ 576 (778)
..|+.+|+. .++.-+-..|-+.+|...+..+.. --+|+...|..||..= ..+| +.-+.+.++.| .+-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 567777764 566667778888888888888764 2334777777777643 2334 66667777766 3447788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFE-MEPEN 608 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~-l~p~~ 608 (778)
.|.-.+.-=..+|..+.+-.++.++.+ ++|+.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888877777788888877777777765 55554
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.05 E-value=2.3e+02 Score=23.34 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHhhhcCCcc-hHHHHHHHH
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN--AGMYVLLSNLYAASGRWG-DVSKVRLKM 635 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~~y~~L~~~y~~~g~~~-~a~~~~~~m 635 (778)
|....-.|...+...|+++.|...+-.+++.+|+. ...-..|..++...|.-+ -+.+.|++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 34566667777888888888888888888776643 556667777777777644 455556555
No 409
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.98 E-value=91 Score=28.26 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 559 LDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
-+.|.++++-|+ +....-.........|++..|..+.+.++..+|+|..+-.+.+++|...|.-.+..-.|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~R 127 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWR 127 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHH
Confidence 345666666664 12222233344567899999999999999999999999899998888777655544443
No 410
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.98 E-value=1e+02 Score=33.61 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=30.0
Q ss_pred hCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 568 NMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 568 ~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...++|. ..++.+-++.+.+++|+..|-..+++++++.|..
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3356665 3477888888999999999999999999999865
No 411
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.96 E-value=41 Score=34.26 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=34.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
-+.|+.++|..+|+.. .+.|+ +.+..-+..-.-.+++.-+|...+-+++.+.|.|+.+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4567777777776543 44444 2233333333344566667777777777777776555443
No 412
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.60 E-value=7.9e+02 Score=29.43 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHH
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEM 397 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m 397 (778)
..+........|+.+....+-.-|.+ |..++.-+.+.+.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555666666666655444433 556777788888888888877543
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.26 E-value=4.3e+02 Score=26.27 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 460 AYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 460 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
+..+|+-..+|.+..-..|+..+. .++.++|++.+.++-+.|..|..+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 345555556677777777777654 477999999999999999988764
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.16 E-value=48 Score=32.46 Aligned_cols=57 Identities=28% Similarity=0.463 Sum_probs=44.3
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
++...|+-+.|.+++++. ...|+ ...|--+...--+.|+.+.|.+++++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345667777777777766 44454 6788888888888899999999999999998875
No 415
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.80 E-value=3.5e+02 Score=32.14 Aligned_cols=130 Identities=20% Similarity=0.218 Sum_probs=86.4
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
+....||+++.|.+.-.++. |...|..|+..-...|+.+-|...|++... |.-|---|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567999999988876665 455899999999999999999999988765 2223333455688887766
Q ss_pred HHHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 529 YFYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.....+.+ -|. .+| +..+| .|++++=.++++..+.-|- .|-+ -..||.-++|+++.+.+-.
T Consensus 720 m~~iae~r----~D~~~~~--qnalY--l~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQF--QNALY--LGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHHHH--HHHHH--hccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhcc
Confidence 55544322 121 111 11122 5888888888887764432 2211 2468888999998888776
No 416
>PRK10941 hypothetical protein; Provisional
Probab=36.54 E-value=2.1e+02 Score=29.19 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 547 TCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 547 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
+.+-..|.+.++++.|+...+.+ -+.|+ +.-|.--.-.+.+.|....|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34556778889999999888877 45565 5567777777888999999999999999999998765443
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.32 E-value=1.2e+02 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 571 FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 571 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
..|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467888888888888888888888888888888887
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.01 E-value=2e+02 Score=25.47 Aligned_cols=60 Identities=10% Similarity=0.167 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 490 DALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 490 ~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+..+-++.+..-.+.|++-.....|.||-+.+++.-|.++|+..+.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34445555666678999999999999999999999999999988654 3344445666654
No 419
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=35.34 E-value=14 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.4
Q ss_pred ccccCccchhh
Q 004024 735 LRVCEDCHNAI 745 (778)
Q Consensus 735 lr~c~dch~~~ 745 (778)
.-||+|||.--
T Consensus 20 iYiCgdC~~en 30 (62)
T KOG3507|consen 20 IYICGDCGQEN 30 (62)
T ss_pred EEEeccccccc
Confidence 45899999754
No 420
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.81 E-value=3.3e+02 Score=26.09 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=32.8
Q ss_pred HHHhcCCHHHHHHHHHhccC------CChhHHHHHHH-HHHHcCC--hHHHHHHHHHHHHC
Q 004024 450 MYCKCGSVEEAYHAFEEIVD------KDVISWNTMIA-GYARHGF--GKDALMLFESMKTV 501 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~------~d~~~~~~li~-~~~~~g~--~~~Al~l~~~m~~~ 501 (778)
.....|++++|.+-++++.+ +-...|..+.. +++.++. +-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34566788888888877644 24456666665 6777664 45666666655543
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=34.37 E-value=46 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|+.+|...|+.+.|.++.+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35788999999999999988877653
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.37 E-value=45 Score=29.65 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=24.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 517 (778)
...|.-.+|-.+|++|.+.|-.||. |..|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999988885 55666554
No 423
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.34 E-value=56 Score=33.31 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=29.4
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD 574 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 574 (778)
.+.|..++|..+|+... .+.|+ ++...-+....-...++-+|-..+-+. .+.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 47788899999888765 44554 333333333333334444555554433 44553
No 424
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.72 E-value=89 Score=21.83 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=11.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 004024 479 IAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555554
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.44 E-value=1.7e+02 Score=27.68 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=26.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 580 ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 580 ~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
..+..|.+.|.+++|+++++++++ +|++...-..|.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 345678899999999999999998 777754433333
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.29 E-value=1.3e+02 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
...|++..|..++.++...|+.++|.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566666666666666666666666665555
No 427
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=32.29 E-value=22 Score=20.01 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=6.8
Q ss_pred ccchhhHHhh
Q 004024 740 DCHNAIKHIS 749 (778)
Q Consensus 740 dch~~~k~~s 749 (778)
.-|.++|+||
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 3477777776
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.21 E-value=5.6e+02 Score=29.47 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=20.9
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
...-++..|.+.|-.+.++.+...+-..-+. + .-|..-+..+.++|+.+....+-+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~-~-~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLLK-E-GRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-C-CCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444556666666666666666554333221 1 1233344556677776655554443
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.17 E-value=7e+02 Score=27.23 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 004024 474 SWNTMIAGYAR---HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG 521 (778)
Q Consensus 474 ~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 521 (778)
....+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455665554 4788999999999999998887665544444443333
No 430
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=32.13 E-value=23 Score=37.42 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHhhhC-CCCCCcEE
Q 004024 707 LRYHSEKLAVAYGILS-IPAGRPIR 730 (778)
Q Consensus 707 l~~hse~la~~~gl~~-~~~~~~i~ 730 (778)
=..+.=|+|+||++|. .|||+..|
T Consensus 16 wyl~tsKlAlAlAIIrsKPpg~s~R 40 (375)
T PF13971_consen 16 WYLKTSKLALALAIIRSKPPGKSSR 40 (375)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 3446679999999995 57786554
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.04 E-value=2.8e+02 Score=27.33 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhHH--HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPD---DITM--VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTC 548 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd---~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 548 (778)
-.|.||--|..+..+.+|.+.|.. +.|+.|. ..++ ..-+......|++++|.+..++.... -+.-|.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 355666556655555566665543 3445552 2222 23344556777777777777665432 22233322222
Q ss_pred HHH----HHhhcCCHHHHHHHHHhC
Q 004024 549 MVD----LLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 549 lv~----~l~r~g~~~eA~~~~~~m 569 (778)
|.. =+.|.|..++|+++.+.-
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 246889999999998754
No 432
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.00 E-value=8.2e+02 Score=27.99 Aligned_cols=45 Identities=13% Similarity=-0.022 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc-C--CcchHHHHHHHHHh
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS-G--RWGDVSKVRLKMRD 637 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g--~~~~a~~~~~~m~~ 637 (778)
+.+.+...+.+.-+.. +.....|+.++-.- | ++..|.+++....+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 4555555555544443 44455555555432 1 14555555554443
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.73 E-value=1e+02 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.2
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCC---------chHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENA---------GMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~---------~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
...||+..|.+.+.+.++...... .+...++.++...|++++|.+.++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777888777777776432211 234567888889999999998877654
No 434
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=31.67 E-value=23 Score=22.72 Aligned_cols=10 Identities=50% Similarity=0.869 Sum_probs=8.4
Q ss_pred HHHHHHhhhC
Q 004024 713 KLAVAYGILS 722 (778)
Q Consensus 713 ~la~~~gl~~ 722 (778)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 4899999986
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.66 E-value=1.9e+02 Score=25.52 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+++.-+-.+.+-|++-+..+-|.||++-+|+..|.+++|-+...-+.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 33333445578899999999999999999999999999987754443
No 436
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=31.49 E-value=80 Score=27.27 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=50.2
Q ss_pred eEEEeCCEEEEEEeCCC-CCcchHHHHHHHHHHHHHHHhCCcccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCC
Q 004024 647 SWLEVQNKVHTFSVGDT-LHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPA 725 (778)
Q Consensus 647 s~i~~~~~~~~f~~~d~-~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~ 725 (778)
+|++.++.+-.|...+. ..|...++...|+++.+++... ..++.-|++++ ..||-.|++.+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-----v~f~kVdid~~----------~~la~~f~V~sIP- 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-----FRAAVVGRADE----------QALAARFGVLRTP- 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-----EEEEEEECCCC----------HHHHHHcCCCcCC-
Confidence 34556677666777775 7899999999999988765321 23444566553 3588889999998
Q ss_pred CCcEEEEeccc
Q 004024 726 GRPIRVMKNLR 736 (778)
Q Consensus 726 ~~~i~i~knlr 736 (778)
|+.++||=+
T Consensus 86 --Tli~fkdGk 94 (111)
T cd02965 86 --ALLFFRDGR 94 (111)
T ss_pred --EEEEEECCE
Confidence 677777644
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.39 E-value=81 Score=32.38 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
-||..|..-.+.|+.++|+.|++|.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788999999999999999999999999876666765544
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.27 E-value=1.9e+02 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=24.8
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhh
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKR 399 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 399 (778)
-|..++.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999877
No 439
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=30.73 E-value=1.1e+02 Score=24.60 Aligned_cols=46 Identities=4% Similarity=-0.008 Sum_probs=20.5
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
...-++|+..+....++..-.|+ -.+..+|+.+|+..|+.++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433222221 12344555555555555555544
No 440
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.70 E-value=4.6e+02 Score=28.25 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcC-------ChHHHHHHHHHHHH
Q 004024 428 LHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHG-------FGKDALMLFESMKT 500 (778)
Q Consensus 428 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g-------~~~~Al~l~~~m~~ 500 (778)
+...-.++....-..+-|.|+++|...+.++.|.++..+..-|+..+-|-...-+--.| ++..|.+.|-+...
T Consensus 196 lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 196 LRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Q ss_pred CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 501 VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 501 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
..|+.... |+.-.+.-+.+++.+| .|.+.| ..+|.+-+++.....|--
T Consensus 276 --kapq~~al---------------------------Gf~q~v~k~~ivv~ll--~geiPe-rs~F~Qp~~~ksL~~Yf~ 323 (493)
T KOG2581|consen 276 --KAPQHAAL---------------------------GFRQQVNKLMIVVELL--LGEIPE-RSVFRQPGMRKSLRPYFK 323 (493)
T ss_pred --hCcchhhh---------------------------hHHHHHHHHHHHHHHH--cCCCcc-hhhhcCccHHHHHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
|-.| .+.||+++-....++....--.+ ++|.+...+
T Consensus 324 Lt~A-Vr~gdlkkF~~~leq~k~~f~~D-~ty~LivRL 359 (493)
T KOG2581|consen 324 LTQA-VRLGDLKKFNETLEQFKDKFQAD-GTYTLIVRL 359 (493)
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHhhC-CcchHHHHH
No 441
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=30.46 E-value=56 Score=26.07 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCCcc
Q 004024 668 KDRIYAYLEELEFKLKQDGFVYSTKLV 694 (778)
Q Consensus 668 ~~~i~~~l~~l~~~~~~~gy~p~~~~~ 694 (778)
..+|.+.+++...+++..||.||.-.+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456788888889999999999997654
No 442
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=5.6e+02 Score=25.59 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhc--cCCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-HHhccCcHHHHHHHH
Q 004024 455 GSVEEAYHAFEEI--VDKDVIS-WNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS-ACSHTGLVEKGTEYF 530 (778)
Q Consensus 455 g~~~~A~~~f~~m--~~~d~~~-~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~ 530 (778)
.+++.|...+.+. ..|++.+ |+.=+..|.+..+++.+.+=-.+.++ +.||.+---..+. +......+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4455555555544 3365543 55566777777777777776666666 6777664333332 334444455555444
Q ss_pred HH
Q 004024 531 YS 532 (778)
Q Consensus 531 ~~ 532 (778)
.+
T Consensus 102 qr 103 (284)
T KOG4642|consen 102 QR 103 (284)
T ss_pred HH
Confidence 43
No 443
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=30.40 E-value=1.1e+03 Score=28.90 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc--HHHHHHHHHHchhhcCCCCC-hHHHHHHHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL--VEKGTEYFYSMNRDYGVIPN-SKHYTCMVDL 552 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 552 (778)
|..+.-++..+..+......++..+.. |..--.+.|+++.+.+. -+++++-|.. ++.-.|- ..-|-.+.-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~~~~~~~l~~f~~---~~~~~~lv~~kwf~~qa~ 749 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFESDFRERALAAFYQ---KWKDDPLVMDKWFALQAT 749 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCChhHHHHHHHHHH---HHCCCchhHHHHHHHHhC
Confidence 444444444454432223333333322 22223344455554333 3344444443 3333343 2233333332
Q ss_pred HhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 553 LGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRLYG-------KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g-------~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
-.+.+-++...++.+.-.+.+ ++.-..+|++++...+ +-+-=..+++.+++++|-||.+-..|+..+..-.+
T Consensus 750 ~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~ 829 (863)
T TIGR02414 750 SPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRK 829 (863)
T ss_pred CCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhc
Confidence 223333444444443323333 3456688888886433 22333566788999999999988889999888888
Q ss_pred cchHHH
Q 004024 625 WGDVSK 630 (778)
Q Consensus 625 ~~~a~~ 630 (778)
+++..+
T Consensus 830 ~~~~r~ 835 (863)
T TIGR02414 830 LDPKRQ 835 (863)
T ss_pred CCHHHH
Confidence 887765
No 444
>PRK14015 pepN aminopeptidase N; Provisional
Probab=30.37 E-value=1.1e+03 Score=28.90 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHHHhccCc--HHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 004024 511 VGILSACSHTGL--VEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACR 586 (778)
Q Consensus 511 ~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~ 586 (778)
.+.|+++.+.+. -+++++-|..- +.-.|- ..-|-.+...-.+.+-++...++.+.=.+.+ ++.-..+|++++.
T Consensus 718 ~~al~~l~~~~~~~~~~~l~~f~~~---~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~ 794 (875)
T PRK14015 718 LAALSALVNADLPERDEALADFYDR---WKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFA 794 (875)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHH---hCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHh
Confidence 344555554433 34455555443 333342 2334333333233333445444443333443 3556788998885
Q ss_pred HcC-------ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 587 LYG-------KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 587 ~~g-------~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
..+ +-+-=..+++.++++++-||.+-..|...+.+-.++++..+
T Consensus 795 ~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 795 AANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred hcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 433 22333566788999999999988889888888888887765
No 445
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=30.29 E-value=10 Score=29.64 Aligned_cols=14 Identities=50% Similarity=0.923 Sum_probs=11.0
Q ss_pred ecccccCccchhhH
Q 004024 733 KNLRVCEDCHNAIK 746 (778)
Q Consensus 733 knlr~c~dch~~~k 746 (778)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45699999998753
No 446
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.25 E-value=9.2e+02 Score=27.99 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=98.2
Q ss_pred CccHhhHHHHHHHhcCChhHHHHHHhhCC-C--CChhHHHHHHHHHh-cCCCHHHHHHHHhhCC---CCCee------hH
Q 004024 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMP-V--RDEVSWNTMITGYA-QNNYLAEAQRLFEEAP---VKDVF------TW 281 (778)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~--~d~~~~~~li~~y~-~~g~~~~A~~~f~~m~---~~d~~------~~ 281 (778)
++..|..||.+-.+|= +.++.... . .+..+.--+...|. ...+++.|+..+++.. +++.. .-
T Consensus 29 ~l~~Y~kLI~~ai~CL-----~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~ 103 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCL-----EAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQ 103 (608)
T ss_pred hHHHHHHHHHHHHHHH-----HHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4567778877665541 11221222 2 24556666777666 6788999999998753 22111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC----CcchHHHHH-----HHHhccCChHHHHHHHHhhc-------cccccHHHH
Q 004024 282 TAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMI-----AGYVQTKRMDMARELFEAMT-------CKNVASWNT 345 (778)
Q Consensus 282 ~~li~~~~~~g~~~~A~~l~~~m~~~----~~~t~~~ll-----~~~~~~~~~~~a~~i~~~~~-------~~~~~~~~~ 345 (778)
..++..|.+.+... |....++..+. ....|.-.. ..+...++...|.+.++.+. .+.+.+.-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34566677776666 88888776543 112222222 12222378888888888776 222333333
Q ss_pred HHHHH--HhcCChhHHHHHhhhCC----C---------CCeeehhhHHH--HHHhcCChhHHHHHHHHHhh
Q 004024 346 MITGY--AQSGEITHARNLFDRMP----Q---------HDCISWAAIIA--GYAQSGYSEDSLRLFIEMKR 399 (778)
Q Consensus 346 Li~~y--~k~g~~~~A~~~f~~m~----~---------~d~~~~~~li~--~~~~~g~~~~Al~l~~~m~~ 399 (778)
++.+. .+.+..+++.+..+++. . +-...|..|+. .+...|+++.+...+++++.
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33332 34455566666665441 1 12245655554 35567777777776666654
No 447
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.11 E-value=22 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.0
Q ss_pred eEEEEecCCcccccCCcccC
Q 004024 754 RLIILRDNNRFHHFSGGSCS 773 (778)
Q Consensus 754 r~i~~rd~~rfh~f~~g~cs 773 (778)
.-|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778899999999999854
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.69 E-value=98 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=11.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 004024 477 TMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.+|.||.+.|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555443
No 449
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=28.66 E-value=1e+02 Score=25.75 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=29.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhCCcccCCCcccc
Q 004024 662 DTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLH 696 (778)
Q Consensus 662 d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~ 696 (778)
-+.||....+-...+++.....+.|..|....-+-
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~ 91 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLA 91 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 46799999888889999999999999998765443
No 450
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=28.00 E-value=25 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=19.6
Q ss_pred ecccccCcc-chhhHHhhhhcCeEEEEecCCc
Q 004024 733 KNLRVCEDC-HNAIKHISKIVGRLIILRDNNR 763 (778)
Q Consensus 733 knlr~c~dc-h~~~k~~s~~~~r~i~~rd~~r 763 (778)
-++-||.+| |.|.+--.....-..++||+|-
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 477899999 7776553222222257899873
No 451
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.90 E-value=1.2e+02 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=23.4
Q ss_pred HHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 314 AMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 314 ~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
.+.+.|...|.+.+|.++++... +.+...+-.|+..|+..|+--.|.+-
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 33445555555555555555554 33344444455555555543333333
No 452
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.86 E-value=3.6e+02 Score=27.55 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHc-----CChHHHHHHH
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARH-----GFGKDALMLF 495 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~-----g~~~~Al~l~ 495 (778)
+..--|-.|+|.|....+.++-..-.. .+...|.+++.-|..| |..++|.++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 334446678888888777766554422 3555688887777664 8888888877
No 453
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.81 E-value=9.7e+02 Score=27.47 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhh
Q 004024 342 SWNTMITGYAQSGEITHARNLFD 364 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~ 364 (778)
.+..++++...+|--....-+.+
T Consensus 342 ~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 342 ARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444444433333333
No 454
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.46 E-value=1.1e+02 Score=24.86 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChH
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVD 295 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 295 (778)
++.+....-...+...+.+.|.++++.++.+...+|.+..+++-+.|...
T Consensus 29 ~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 29 GVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 33333333333444455556666666666666666666666665555443
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.56 E-value=1.7e+02 Score=31.79 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=17.4
Q ss_pred CeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 370 d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.+.++--+.-+|...+++.+|.+.|....
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666677766666654
No 456
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.51 E-value=1.2e+02 Score=23.91 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=28.9
Q ss_pred CEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCC
Q 004024 653 NKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTK 692 (778)
Q Consensus 653 ~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~ 692 (778)
.+.-.|-.+| +..++|.+.|.+....+++.||-|-..
T Consensus 5 D~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpiNQ 41 (88)
T COG4472 5 DETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPINQ 41 (88)
T ss_pred cceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3445677776 556788889999999999999998654
No 457
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.37 E-value=6e+02 Score=24.54 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCCChhHHH--HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH-----HHHhhcCCHHHH
Q 004024 490 DALMLFESMKTVGIKPDDITMV--GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV-----DLLGRAGRLDEA 562 (778)
Q Consensus 490 ~Al~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-----~~l~r~g~~~eA 562 (778)
+.....+++....-+...-++. .+..+....|++++|...++..... |..+.+..++ .++...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555666666532121222222 2334677889999998888765432 4444455444 456778999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 563 QNLMKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 563 ~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+..++... .++ +..-..-..++...|+.+.|+..+++.++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998653 232 1112223467788999999999999999987554
No 458
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=26.15 E-value=3.3e+02 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhcccCCccHhhHHHHHHHhcC
Q 004024 200 RIEEACMLFESKANWEVVSWNSLMGGFVKQK 230 (778)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 230 (778)
..++|.++.......|..+|.+..+++-..|
T Consensus 43 ~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 43 QKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444443333
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.82 E-value=6.1e+02 Score=24.50 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------------------
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM------------------- 569 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m------------------- 569 (778)
..+.++..|.-.|+++.|.+.|.-+....++.... .|+.=+..+.+.+.-....++++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~-~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS-LWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh-cchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Q ss_pred -CCC--------CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCC---CCCchHHHHHHHh
Q 004024 570 -PFE--------PD---AATWGALLGACRLYGKTELAEKAAEVIFE--MEP---ENAGMYVLLSNLY 619 (778)
Q Consensus 570 -~~~--------p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~--l~p---~~~~~y~~L~~~y 619 (778)
|.- |. ...|..|...-......+.+.++.+++-| +.| +++..|...+-++
T Consensus 122 ~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~ 188 (199)
T PF04090_consen 122 APVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCH 188 (199)
T ss_pred cccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
No 460
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=7.9e+02 Score=25.64 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 427 QLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 427 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
-+++.+...++-++..+..+-++...+.+.+|-+..++...-. .|. -.++.. +-.+.+.-+++++++ +.|
T Consensus 21 PLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~------p~a~~e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 21 PLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM------PNALVE--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc------hHHHHH--HHHHHHHHHHHHHHH-HHH
Confidence 3445555566667777777788888888889999888887622 111 011111 112233333333321 111
Q ss_pred ChhHHHHHH---HHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH---HhCCCCCCH---
Q 004024 506 DDITMVGIL---SACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLM---KNMPFEPDA--- 575 (778)
Q Consensus 506 d~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~---~~m~~~p~~--- 575 (778)
...++ ..-.....-.++...++.+.+.|++.|+ +++.--...-...+|++..|-+.+ ...--.||.
T Consensus 92 ----iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 92 ----IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred ----HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 11111 1112222333457788888899999996 333334445556799999887764 333223443
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 576 -ATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 576 -~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
..|+-|.+--. --|.+.|.+-+.++.+.
T Consensus 168 salwGKlASEIL-~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 168 SALWGKLASEIL-TQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence 46776655433 34677777777777663
No 461
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.18 E-value=1e+03 Score=26.75 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=69.7
Q ss_pred CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 004024 405 NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAG 481 (778)
Q Consensus 405 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 481 (778)
|...+.+++..++..-.......+-.++...| -+-..+-.+...|... ..+.-..+++++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33344444555554444444444444444443 1233334444555444 23333444443332 233333333333
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhc--cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcC
Q 004024 482 YARHGFGKDALMLFESMKTVGIKPDDI--TMVGILSACSH--TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAG 557 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~pd~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g 557 (778)
|-+ ++.+.+..+|.+.... +-|... ...-+=.-.-+ ..+.|.-.++...++++.|..--...+.-+-+-|....
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 333 5555555555554432 111100 00000000111 23344444455555555455444555555556666677
Q ss_pred CHHHHHHHHHhC
Q 004024 558 RLDEAQNLMKNM 569 (778)
Q Consensus 558 ~~~eA~~~~~~m 569 (778)
+++||++++..+
T Consensus 220 N~~eai~Ilk~i 231 (711)
T COG1747 220 NWTEAIRILKHI 231 (711)
T ss_pred CHHHHHHHHHHH
Confidence 777777776644
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.14 E-value=1.9e+02 Score=31.38 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=19.0
Q ss_pred CeehHHHHHHHHHhcCChHHHHHHHHhCC
Q 004024 277 DVFTWTAMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 277 d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
.+.++--+.-+|.-.+++.+|++.|....
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777777776553
No 463
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=25.12 E-value=21 Score=29.68 Aligned_cols=12 Identities=50% Similarity=1.215 Sum_probs=9.0
Q ss_pred ccCCcccCCCCC
Q 004024 766 HFSGGSCSCGDY 777 (778)
Q Consensus 766 ~f~~g~csc~d~ 777 (778)
--..|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 345678999886
No 464
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.96 E-value=1.2e+02 Score=23.04 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 506 DDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 506 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
|-.--..++.++...|.+++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445666677777777777777666654
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.66 E-value=2.3e+02 Score=32.92 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=20.5
Q ss_pred cCccchhhHHhhhhcCeEEEEecCCc
Q 004024 738 CEDCHNAIKHISKIVGRLIILRDNNR 763 (778)
Q Consensus 738 c~dch~~~k~~s~~~~r~i~~rd~~r 763 (778)
|..=|.+.=-.|+|.|-.+--||.+.
T Consensus 491 ~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 491 LKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hcCceeeeeehhceecccccccccce
Confidence 67778777778888888888888665
No 466
>PF14376 Haem_bd: Haem-binding domain
Probab=24.45 E-value=27 Score=31.48 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=7.4
Q ss_pred cccCccchh
Q 004024 736 RVCEDCHNA 744 (778)
Q Consensus 736 r~c~dch~~ 744 (778)
+-|.||||-
T Consensus 42 ~~CydCHSn 50 (137)
T PF14376_consen 42 NSCYDCHSN 50 (137)
T ss_pred ccccccCCC
Confidence 579999974
No 467
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.16 E-value=1.3e+03 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 004024 448 LVMYCKCGSVEEAYHAFEEIV 468 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~ 468 (778)
.-.|..+|..-+|...|.+..
T Consensus 927 g~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred heeeecCCchHHHHHHHHHHh
Confidence 334778888888888887653
No 468
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.69 E-value=7.1e+02 Score=26.84 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc------CCHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA------GRLDEAQNLMKNMPFEPDAATWGALLGA- 584 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~------g~~~eA~~~~~~m~~~p~~~~~~~Ll~a- 584 (778)
.........+++..|.++|..+... .+.|....+-..+..++++ -+.++|.+.++.+....+...|..+...
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred --HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc------CCcchHHHHHHHHHh
Q 004024 585 --CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS------GRWGDVSKVRLKMRD 637 (778)
Q Consensus 585 --~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~------g~~~~a~~~~~~m~~ 637 (778)
..+....-++.....++...+-..-.++.+|.+++..+ |++++|.-.+-+..+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 469
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.55 E-value=2.7e+02 Score=19.74 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
.+.|...++..++++|.+.|+.-++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34566666666666666666655555554444
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.55 E-value=1.7e+02 Score=23.74 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=14.0
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHcCC
Q 004024 137 KSLSAARNLFEMMPKRDVVSWNTMLSGYAQNG 168 (778)
Q Consensus 137 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 168 (778)
.+.+.|.++.+..+.++..+|.++.+++-..|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444333
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.42 E-value=8.1e+02 Score=25.47 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh------h----cCCHHH
Q 004024 492 LMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG------R----AGRLDE 561 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~------r----~g~~~e 561 (778)
.++++.|...++.|.-..|.-+.--+++.=.+.+.+.+++++..+ ..-|..|+..++ | .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 468888888999999998888888888888888889999888764 222333333332 2 478888
Q ss_pred HHHHHHhCC
Q 004024 562 AQNLMKNMP 570 (778)
Q Consensus 562 A~~~~~~m~ 570 (778)
-+++++.-|
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888765
No 472
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=23.33 E-value=4e+02 Score=27.08 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..+=+++...+..+.|.+..++++.++|+++.-..--+-+|+..|-..-|.+-....-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 3444667778899999999999999999998777888889999999888888776543
No 473
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.09 E-value=5.9e+02 Score=28.06 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC-------------ChhHHHHHHHHH----
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK-------------DVISWNTMIAGY---- 482 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-------------d~~~~~~li~~~---- 482 (778)
+.+++-.++++.+.+.| .+| +...-||.|.+.+++++|.+.+++-.+. .+.....++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34555555555555544 111 3344566677777777776666654331 122223333332
Q ss_pred -HHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH---Hchhh---cCCCCChHHHHHH
Q 004024 483 -ARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFY---SMNRD---YGVIPNSKHYTCM 549 (778)
Q Consensus 483 -~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~---~~~~p~~~~y~~l 549 (778)
.+||- .+|..+++-+...|+...+--..+.---|++.=-+++++..++ ++... .|+..|.+.+.+|
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 24554 3577788888888876543222222223444445566555544 33222 2666566666554
No 474
>PHA02875 ankyrin repeat protein; Provisional
Probab=22.69 E-value=9.9e+02 Score=25.81 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCchhhhHhhhhCCCCChhh--HHHHHHHHHhCCCchHHHHHHhhCCCCCcc--hHHHHHHHHHcCCChhH
Q 004024 66 VAITTHMRNGCCDSALHVFNSMPRRSSVS--YNAMISGYLLNGQLDPARQVFDQMPQRDLV--SWNVMISGYVRNKSLSA 141 (778)
Q Consensus 66 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~ 141 (778)
..+...+..|..+-...+++.+..++... ..+.+...++.|+.+-+.-+.+.-..++.. ...+.+...+..|+.+.
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Q ss_pred HHHHHhhCCCCCcchHH---HHHHHHHcCCChHHHHHHHHhcccCCcchHH--HHHHHHHhcCCHHHHHHHHHhcccCCc
Q 004024 142 ARNLFEMMPKRDVVSWN---TMLSGYAQNGYADAARRIFDRMLEKNEISWN--GLLAAYVQNGRIEEACMLFESKANWEV 216 (778)
Q Consensus 142 A~~~f~~m~~~d~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (778)
+..+++.-...+..... +.+...+..|+.+-+..+++.-..++..... +.+...+..|+.+-...+++.....+.
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~ 163 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163 (413)
T ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Q ss_pred c--HhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHH---HHHHHHhcCCCHHHHHHHHhhCCCCCee--------hHHH
Q 004024 217 V--SWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWN---TMITGYAQNNYLAEAQRLFEEAPVKDVF--------TWTA 283 (778)
Q Consensus 217 ~--~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~---~li~~y~~~g~~~~A~~~f~~m~~~d~~--------~~~~ 283 (778)
. ...+.+...+..|..+-+..+++.-..++....+ +++...++.|..+-+.-+++.-..++.. +.-.
T Consensus 164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~ 243 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILD 243 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHH
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 004024 284 MVSGYVQNGKVDEARMIFDAM 304 (778)
Q Consensus 284 li~~~~~~g~~~~A~~l~~~m 304 (778)
++.-+......+....+....
T Consensus 244 ~~~~~~~~~~~~~~~~li~~i 264 (413)
T PHA02875 244 MICNMCTNLESEAIDALIADI 264 (413)
T ss_pred HHHhhcCCcccHHHHHHHHHH
No 475
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.15 E-value=2.6e+02 Score=31.57 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.+...+.|...+|..++.+... ..+.++-++..+|....+.+.|++.|++..+
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3334444555555555443322 3344555555555555666666666665554
No 476
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=3.9e+02 Score=28.01 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
..+|--=.+-|.+..++..|...+.+- --.|| ++.|+.=..+-...||+..+..-..+++.++|.+...|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344555566778889999999988765 11344 556666666666679999999999999999999999998888
Q ss_pred HHhhhcCCcchHHHHHHH
Q 004024 617 NLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~ 634 (778)
.++....+.++|..+.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 888888887766655443
No 477
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=21.83 E-value=2.4e+02 Score=22.63 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=25.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
...+-++|+..|+...+.-..|.. .++..++.|++..|.+.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666554333221 2555666677777776666554
No 478
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.73 E-value=2.8e+02 Score=22.79 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
+.......|+.+.|...++.++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445566788888888888777653
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.40 E-value=1e+03 Score=25.47 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=51.1
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHH-hhcCCHHHHHHHHHhCCC--CCC------HHHHHHHHH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLL-GRAGRLDEAQNLMKNMPF--EPD------AATWGALLG 583 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l-~r~g~~~eA~~~~~~m~~--~p~------~~~~~~Ll~ 583 (778)
..+.+.|-+.-|.++.+-+. .+.|+ +..--.+||.| .|+++++--+++.+.... ..+ ...++.-|.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 35667777777777776664 45554 33344556666 367777777777665422 111 123333333
Q ss_pred HHHHcCCh---------------HHHHHHHHHHHhcCC
Q 004024 584 ACRLYGKT---------------ELAEKAAEVIFEMEP 606 (778)
Q Consensus 584 a~~~~g~~---------------~~a~~~~~~~~~l~p 606 (778)
-+. .++. +.|..++++++..-|
T Consensus 188 ~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHH-hcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 333 3333 788888888887766
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.25 E-value=5.9e+02 Score=28.73 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCCCC--Ce---eehhhHHHHHHhcCChhHHHHHHHHHhh
Q 004024 344 NTMITGYAQSGEITHARNLFDRMPQH--DC---ISWAAIIAGYAQSGYSEDSLRLFIEMKR 399 (778)
Q Consensus 344 ~~Li~~y~k~g~~~~A~~~f~~m~~~--d~---~~~~~li~~~~~~g~~~~Al~l~~~m~~ 399 (778)
..|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999888532 11 2333444455555545555555555554
No 481
>PRK07914 hypothetical protein; Reviewed
Probab=21.05 E-value=8.8e+02 Score=25.32 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CC-hh-------------HHH--HHHHHH
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-KD-VI-------------SWN--TMIAGY 482 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d-~~-------------~~~--~li~~~ 482 (778)
...+...++-..+.+.|+..+......|+...+ +++....+-++++.. ++ .+ .+| .++.+
T Consensus 129 ~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dA- 205 (320)
T PRK07914 129 KAAERADFVRKEFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADK- 205 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHH-
Confidence 455667777788888888888888777777665 466666555555421 10 11 111 12222
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
...|+..+|+.+++++...|..|-
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHV 229 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchH
Confidence 345888888888888888887764
No 482
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=42 Score=33.59 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=14.6
Q ss_pred cccCccchhhHHhhhhcCe
Q 004024 736 RVCEDCHNAIKHISKIVGR 754 (778)
Q Consensus 736 r~c~dch~~~k~~s~~~~r 754 (778)
-+|+|||+.+|.+=.-.++
T Consensus 253 EtC~~C~sYlKilyqekdp 271 (308)
T COG3058 253 ETCGDCNSYLKILYQEKDP 271 (308)
T ss_pred hcCCcHHHHHHHHHHhcCC
Confidence 5899999999987554433
No 483
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.81 E-value=5.4e+02 Score=22.64 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHH----HHHHHhhh
Q 004024 560 DEAQNLMKNMPFEP-------DAATWGALLGACRLYGKTELAEKAAEVIF-------EMEPENAGMYV----LLSNLYAA 621 (778)
Q Consensus 560 ~eA~~~~~~m~~~p-------~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~y~----~L~~~y~~ 621 (778)
..|+++-+.||-+- |...+..|-.++...|+++.+...+++.+ +++.+....++ .-+-.+..
T Consensus 33 r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~ 112 (144)
T PF12968_consen 33 RKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEG 112 (144)
T ss_dssp HHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHh
Q ss_pred cCCcchHHHHHHHHHh
Q 004024 622 SGRWGDVSKVRLKMRD 637 (778)
Q Consensus 622 ~g~~~~a~~~~~~m~~ 637 (778)
.|+.+||.+.+++.-+
T Consensus 113 ~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 113 LGRKEEALKEFRMAGE 128 (144)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
No 484
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=20.76 E-value=70 Score=28.67 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=31.0
Q ss_pred HHHhCCcccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcC
Q 004024 681 KLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVG 753 (778)
Q Consensus 681 ~~~~~gy~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 753 (778)
...+..|+-....+-|.++. -+|+||--.|--||+.- +|+.+|
T Consensus 60 ~r~e~nYvnQPP~IPHsi~~----------------------------Yqvtkn~N~CLsCH~~e--~s~~tG 102 (155)
T COG3043 60 TRMELNYVNQPPMIPHSIEG----------------------------YQVTKNTNRCLSCHSVE--NSRTTG 102 (155)
T ss_pred hhhhhccCCCCCCCcccccC----------------------------ceeecccchhhhccCHH--HHhhcC
Confidence 33455677777777777652 68999999999999854 455555
No 485
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.71 E-value=5.7e+02 Score=25.37 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPDD 507 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~ 507 (778)
|.+.++.||. ..-.|+++.|+++.+-.++.|. .|+.
T Consensus 83 d~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 83 DDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred CCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 4443333333 3456999999999999999884 3543
No 486
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.45 E-value=3.8e+02 Score=23.61 Aligned_cols=74 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCchHHHHHHHhhhcCCcchHHHHHHH
Q 004024 559 LDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE--MEPENAGMYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
++++...|...+.--|..-+--+=-.+...-+ .+..+++.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 49 Ler~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 49 LERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 487
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.29 E-value=4.1e+02 Score=28.20 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCc--chH
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHP--EKD 669 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp--~~~ 669 (778)
|.-.+++-++--.+|+|+..-..+ +|.++++.++++|-..+ =..++|+.... -..
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Gedve------------VA~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGEDVE------------VAVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCCeE------------EEEEECCCCCchhhHH
Confidence 334555666667899998877766 46789999998875221 23667775432 234
Q ss_pred HHHHHHHHHHHHHHhCCcccCCCccccccchhhH
Q 004024 670 RIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEK 703 (778)
Q Consensus 670 ~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k 703 (778)
+|.++|+++.++ |.||.-.+.-|-.|+|+
T Consensus 85 ~I~~qld~vl~~-----~~~~~~i~VsDGaeDE~ 113 (344)
T PF04123_consen 85 KIAEQLDEVLSK-----FDPDSAIVVSDGAEDER 113 (344)
T ss_pred HHHHHHHHHHHh-----CCCCEEEEEecChhhhh
Confidence 566666665543 56776566667666654
No 488
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.22 E-value=1.2e+02 Score=22.78 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCccc
Q 004024 661 GDTLHPEKDRIYAYLEELEFKLKQDGFVY 689 (778)
Q Consensus 661 ~d~~hp~~~~i~~~l~~l~~~~~~~gy~p 689 (778)
|-..-.+.+.|...+++-...+.+.||+|
T Consensus 31 G~iTqeqAd~ik~~id~~~~~~~qnGf~p 59 (59)
T PF10925_consen 31 GVITQEQADAIKKHIDQRQEYMQQNGFVP 59 (59)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33455678889999999999999999998
Done!