Query 004024
Match_columns 778
No_of_seqs 978 out of 5171
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-41 5.5E-46 392.2 37.5 485 137-638 67-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.4E-41 2.2E-45 387.2 34.8 504 103-621 64-596 (597)
3 4g26_A Pentatricopeptide repea 99.9 2.3E-27 7.9E-32 264.3 19.1 198 358-556 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 3.4E-25 1.2E-29 241.0 33.1 359 226-624 9-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.2E-26 1.1E-30 255.1 19.3 200 388-588 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 9.5E-24 3.2E-28 229.5 33.4 344 286-637 7-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.9E-23 1E-27 230.2 28.7 334 246-645 25-413 (450)
8 2gw1_A Mitochondrial precursor 99.9 7.1E-21 2.4E-25 214.5 26.1 415 218-638 8-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.6E-20 5.3E-25 213.2 29.0 421 155-637 26-490 (537)
10 2gw1_A Mitochondrial precursor 99.9 1.7E-20 5.8E-25 211.4 25.7 240 372-616 238-490 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 4.4E-20 1.5E-24 204.5 27.7 353 216-628 26-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 5E-20 1.7E-24 209.0 26.5 428 92-613 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.3E-17 4.5E-22 177.8 26.9 182 438-621 151-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 4.4E-17 1.5E-21 173.7 30.0 298 312-637 6-334 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 5.8E-15 2E-19 173.5 47.8 526 67-631 991-1585(1630)
16 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.6E-22 175.5 22.1 319 259-607 15-344 (449)
17 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.9E-19 170.2 47.1 465 120-630 870-1376(1630)
18 1b89_A Protein (clathrin heavy 99.7 1.8E-17 6.2E-22 176.2 17.6 278 73-365 15-307 (449)
19 3hym_B Cell division cycle pro 99.7 5.6E-16 1.9E-20 163.3 27.2 185 440-626 124-322 (330)
20 1fch_A Peroxisomal targeting s 99.7 1.7E-16 5.8E-21 170.4 19.7 189 440-633 131-354 (368)
21 3hym_B Cell division cycle pro 99.7 2.2E-15 7.4E-20 158.7 26.8 259 373-637 24-298 (330)
22 2ooe_A Cleavage stimulation fa 99.7 1.6E-14 5.6E-19 163.5 33.1 399 215-638 12-492 (530)
23 2xm6_A Protein corresponding t 99.7 2.2E-14 7.5E-19 160.8 33.5 333 248-621 76-452 (490)
24 3mkr_A Coatomer subunit epsilo 99.7 1.6E-14 5.5E-19 149.7 29.4 245 321-637 11-263 (291)
25 1fch_A Peroxisomal targeting s 99.7 1.6E-15 5.3E-20 162.8 22.5 276 291-603 38-358 (368)
26 3spa_A Mtrpol, DNA-directed RN 99.7 4E-17 1.4E-21 186.3 9.9 133 436-569 122-262 (1134)
27 2ooe_A Cleavage stimulation fa 99.7 4.6E-14 1.6E-18 159.8 33.5 400 184-608 12-496 (530)
28 4eqf_A PEX5-related protein; a 99.7 3.4E-15 1.2E-19 160.3 21.9 231 370-638 64-310 (365)
29 4eqf_A PEX5-related protein; a 99.7 3.3E-15 1.1E-19 160.4 21.2 223 308-534 64-308 (365)
30 3spa_A Mtrpol, DNA-directed RN 99.7 3.3E-17 1.1E-21 186.9 4.9 154 372-557 128-286 (1134)
31 4g1t_A Interferon-induced prot 99.7 1E-14 3.4E-19 162.5 24.9 217 420-649 227-470 (472)
32 2xm6_A Protein corresponding t 99.6 1.6E-13 5.3E-18 153.8 33.4 353 245-640 37-434 (490)
33 3cv0_A Peroxisome targeting si 99.6 1.8E-14 6.1E-19 151.4 19.4 256 373-634 23-311 (327)
34 3cv0_A Peroxisome targeting si 99.6 1.1E-13 3.7E-18 145.4 23.5 250 313-567 25-310 (327)
35 4g1t_A Interferon-induced prot 99.6 1.6E-13 5.5E-18 152.7 24.8 380 185-616 51-471 (472)
36 3mkr_A Coatomer subunit epsilo 99.6 5E-13 1.7E-17 138.5 25.3 242 258-507 10-268 (291)
37 2pl2_A Hypothetical conserved 99.5 4.2E-13 1.4E-17 132.6 19.2 193 438-635 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.5 8.6E-13 3E-17 133.2 20.4 216 373-637 7-235 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-13 1.1E-17 138.1 14.4 243 381-632 15-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 1.4E-12 4.9E-17 131.6 18.3 239 340-618 5-256 (258)
41 3u4t_A TPR repeat-containing p 99.5 1.8E-12 6.3E-17 132.3 18.6 246 341-624 4-270 (272)
42 3e4b_A ALGK; tetratricopeptide 99.4 2.7E-12 9.3E-17 141.8 20.4 311 252-607 40-390 (452)
43 2ho1_A Type 4 fimbrial biogene 99.4 1.7E-11 5.7E-16 123.6 22.7 205 371-613 37-247 (252)
44 2ho1_A Type 4 fimbrial biogene 99.4 7.9E-12 2.7E-16 126.0 20.2 196 441-639 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.4 1.6E-11 5.6E-16 120.9 21.2 197 439-638 6-211 (225)
46 2q7f_A YRRB protein; TPR, prot 99.4 5.6E-12 1.9E-16 126.1 17.5 211 372-622 24-240 (243)
47 2vq2_A PILW, putative fimbrial 99.4 2.3E-11 8E-16 119.7 21.4 207 371-616 8-223 (225)
48 3u4t_A TPR repeat-containing p 99.4 3.3E-11 1.1E-15 122.9 22.0 236 311-584 5-264 (272)
49 2h6f_A Protein farnesyltransfe 99.4 5.2E-12 1.8E-16 135.6 16.3 241 341-622 98-366 (382)
50 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-11 4.2E-16 123.6 17.6 196 439-638 21-222 (243)
51 3e4b_A ALGK; tetratricopeptide 99.4 8.8E-12 3E-16 137.7 17.7 341 253-640 9-389 (452)
52 2h6f_A Protein farnesyltransfe 99.4 2.5E-11 8.5E-16 130.2 20.1 222 372-635 98-344 (382)
53 1ouv_A Conserved hypothetical 99.3 2.4E-10 8.2E-15 116.8 24.5 223 370-639 5-252 (273)
54 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.6E-16 134.4 14.1 255 342-627 49-365 (406)
55 4abn_A Tetratricopeptide repea 99.3 1E-11 3.6E-16 138.0 14.0 206 422-633 84-316 (474)
56 2pl2_A Hypothetical conserved 99.3 4.4E-11 1.5E-15 117.9 16.9 191 338-569 3-211 (217)
57 1ouv_A Conserved hypothetical 99.3 2E-10 6.9E-15 117.4 22.4 227 338-609 4-256 (273)
58 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.7E-11 9.2E-16 123.6 15.4 218 415-638 14-244 (275)
59 4a1s_A PINS, partner of inscut 99.3 1.4E-11 4.9E-16 134.0 14.0 264 343-637 51-371 (411)
60 3sf4_A G-protein-signaling mod 99.3 3.4E-11 1.2E-15 130.4 16.9 264 343-637 12-335 (406)
61 3ro2_A PINS homolog, G-protein 99.3 4.3E-11 1.5E-15 125.5 16.6 263 344-637 9-331 (338)
62 3vtx_A MAMA; tetratricopeptide 99.3 1.3E-10 4.3E-15 111.0 18.3 162 472-637 5-169 (184)
63 3ro2_A PINS homolog, G-protein 99.2 1.4E-10 4.7E-15 121.6 16.5 236 342-607 45-335 (338)
64 4a1s_A PINS, partner of inscut 99.2 5.8E-11 2E-15 129.2 13.8 268 310-607 49-375 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-10 4.3E-15 134.7 16.6 160 473-637 10-173 (723)
66 3vtx_A MAMA; tetratricopeptide 99.2 3E-10 1E-14 108.4 16.2 167 439-609 3-175 (184)
67 2ond_A Cleavage stimulation fa 99.2 3.5E-09 1.2E-13 110.4 25.1 184 423-610 81-276 (308)
68 4e6h_A MRNA 3'-END-processing 99.2 8.1E-09 2.8E-13 118.2 28.3 225 389-619 327-584 (679)
69 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.4E-14 107.4 19.6 200 409-620 10-225 (228)
70 4e6h_A MRNA 3'-END-processing 99.2 4.9E-09 1.7E-13 120.0 26.2 137 78-214 49-223 (679)
71 2ond_A Cleavage stimulation fa 99.1 2.1E-09 7.3E-14 112.1 20.5 212 423-639 33-271 (308)
72 3nf1_A KLC 1, kinesin light ch 99.1 8.7E-11 3E-15 122.0 9.4 49 587-635 256-304 (311)
73 3ulq_A Response regulator aspa 99.1 7.7E-10 2.6E-14 119.3 17.1 163 442-604 185-368 (383)
74 4abn_A Tetratricopeptide repea 99.1 8.3E-10 2.8E-14 122.6 17.3 178 456-638 83-287 (474)
75 3nf1_A KLC 1, kinesin light ch 99.1 9.6E-11 3.3E-15 121.7 8.7 237 371-607 27-310 (311)
76 3as5_A MAMA; tetratricopeptide 99.1 1.7E-09 5.8E-14 102.5 16.0 159 442-637 9-172 (186)
77 4i17_A Hypothetical protein; T 99.1 1.4E-09 4.8E-14 107.7 15.4 189 440-637 6-208 (228)
78 3as5_A MAMA; tetratricopeptide 99.1 4.6E-09 1.6E-13 99.4 18.0 167 408-611 10-180 (186)
79 3ulq_A Response regulator aspa 99.1 9.9E-10 3.4E-14 118.4 14.6 196 441-637 143-367 (383)
80 1hz4_A MALT regulatory protein 99.0 3.3E-08 1.1E-12 105.9 24.5 194 444-637 96-321 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.0 3.3E-09 1.1E-13 122.8 14.1 165 438-607 6-177 (723)
82 3q15_A PSP28, response regulat 98.9 3.9E-08 1.3E-12 105.6 21.2 161 443-603 184-364 (378)
83 3edt_B KLC 2, kinesin light ch 98.9 4.4E-09 1.5E-13 107.1 11.6 198 440-637 42-280 (283)
84 1qqe_A Vesicular transport pro 98.9 1.7E-08 5.8E-13 104.3 15.7 183 449-633 45-264 (292)
85 4ga2_A E3 SUMO-protein ligase 98.9 4.1E-09 1.4E-13 97.0 9.4 140 448-624 4-149 (150)
86 3q15_A PSP28, response regulat 98.9 2.1E-08 7.3E-13 107.7 16.5 196 441-637 141-364 (378)
87 3qky_A Outer membrane assembly 98.9 5.8E-08 2E-12 98.3 18.9 204 439-684 13-247 (261)
88 1hz4_A MALT regulatory protein 98.9 1.4E-07 4.6E-12 101.0 21.3 192 416-607 103-325 (373)
89 1qqe_A Vesicular transport pro 98.8 2.7E-08 9.3E-13 102.7 14.9 166 442-609 78-274 (292)
90 3qky_A Outer membrane assembly 98.8 8.5E-08 2.9E-12 97.0 17.4 199 408-627 17-250 (261)
91 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 6.8E-12 92.0 18.1 181 442-641 5-216 (225)
92 3qou_A Protein YBBN; thioredox 98.7 1.2E-07 4.2E-12 97.5 15.2 168 462-634 107-280 (287)
93 2fo7_A Synthetic consensus TPR 98.7 2.7E-07 9.2E-12 81.7 15.4 127 474-636 3-130 (136)
94 2pzi_A Probable serine/threoni 98.7 1.4E-07 4.8E-12 109.6 17.0 167 452-624 402-583 (681)
95 3edt_B KLC 2, kinesin light ch 98.7 1.2E-07 4.2E-12 96.2 14.7 165 440-604 84-281 (283)
96 2fo7_A Synthetic consensus TPR 98.7 1.6E-07 5.3E-12 83.2 13.2 95 545-639 3-99 (136)
97 4ga2_A E3 SUMO-protein ligase 98.7 4.4E-08 1.5E-12 90.0 9.0 119 516-637 6-128 (150)
98 3mv2_B Coatomer subunit epsilo 98.7 1.1E-06 3.8E-11 89.5 19.9 174 460-638 85-282 (310)
99 2ifu_A Gamma-SNAP; membrane fu 98.6 5.1E-07 1.7E-11 93.8 15.9 219 384-630 4-253 (307)
100 2pzi_A Probable serine/threoni 98.6 5E-07 1.7E-11 104.9 17.3 193 417-615 402-613 (681)
101 2r5s_A Uncharacterized protein 98.6 2.7E-07 9.2E-12 87.1 12.1 154 445-635 10-170 (176)
102 3gyz_A Chaperone protein IPGC; 98.6 2.1E-07 7.1E-12 85.3 10.4 101 538-638 30-133 (151)
103 2vsy_A XCC0866; transferase, g 98.6 5.1E-07 1.7E-11 102.7 15.8 158 454-616 2-169 (568)
104 3rjv_A Putative SEL1 repeat pr 98.6 2E-06 6.9E-11 83.9 18.0 171 460-639 5-198 (212)
105 3mv2_B Coatomer subunit epsilo 98.6 7.9E-07 2.7E-11 90.6 14.7 167 439-612 98-290 (310)
106 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-07 9E-12 84.5 10.1 100 538-637 15-117 (148)
107 4gco_A Protein STI-1; structur 98.5 3.7E-07 1.3E-11 80.9 10.7 94 544-637 14-109 (126)
108 3urz_A Uncharacterized protein 98.5 9.6E-07 3.3E-11 85.9 14.6 155 448-608 11-190 (208)
109 2vsy_A XCC0866; transferase, g 98.5 5.5E-07 1.9E-11 102.4 14.1 150 485-639 2-158 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.6E-06 1.2E-10 82.8 17.3 180 411-610 9-219 (225)
111 3dra_A Protein farnesyltransfe 98.5 7.9E-06 2.7E-10 83.9 20.2 190 443-637 69-286 (306)
112 2r5s_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 82.1 13.5 155 410-602 10-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 6E-07 2E-11 93.3 11.7 197 418-636 3-222 (307)
114 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.8E-11 78.3 12.3 100 538-637 12-114 (142)
115 3qou_A Protein YBBN; thioredox 98.4 2.1E-06 7.3E-11 88.1 14.4 161 438-603 114-283 (287)
116 4gco_A Protein STI-1; structur 98.4 1.2E-06 4E-11 77.6 10.7 107 510-619 16-125 (126)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.4 3.3E-06 1.1E-10 82.0 14.8 121 513-638 12-150 (213)
118 2qfc_A PLCR protein; TPR, HTH, 98.4 4.7E-06 1.6E-10 85.7 16.4 164 473-636 76-264 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.4 6.7E-06 2.3E-10 79.7 16.7 144 444-608 9-154 (213)
120 3urz_A Uncharacterized protein 98.4 4E-06 1.4E-10 81.5 14.9 181 378-583 11-198 (208)
121 3u3w_A Transcriptional activat 98.4 2.1E-05 7.1E-10 80.8 21.0 159 478-636 81-264 (293)
122 2uy1_A Cleavage stimulation fa 98.4 3.4E-05 1.2E-09 85.4 23.4 361 201-603 11-412 (493)
123 2uy1_A Cleavage stimulation fa 98.4 1.7E-05 5.8E-10 87.9 20.8 357 104-500 6-412 (493)
124 2c2l_A CHIP, carboxy terminus 98.3 5.3E-07 1.8E-11 92.3 7.3 190 440-637 3-198 (281)
125 3upv_A Heat shock protein STI1 98.3 3E-06 1E-10 74.7 10.9 119 543-681 4-124 (126)
126 1na0_A Designed protein CTPR3; 98.3 5.9E-06 2E-10 71.7 12.5 81 543-623 43-125 (125)
127 4f3v_A ESX-1 secretion system 98.3 4.8E-06 1.6E-10 83.7 12.5 181 453-638 18-237 (282)
128 3dra_A Protein farnesyltransfe 98.3 4.7E-05 1.6E-09 78.1 20.3 159 455-618 124-302 (306)
129 2vyi_A SGTA protein; chaperone 98.3 7E-06 2.4E-10 72.0 12.2 84 543-626 46-131 (131)
130 2e2e_A Formate-dependent nitri 98.3 5.1E-06 1.8E-10 78.1 11.7 117 520-638 23-144 (177)
131 2lni_A Stress-induced-phosphop 98.3 7.5E-06 2.6E-10 72.2 12.0 117 471-624 15-133 (133)
132 2qfc_A PLCR protein; TPR, HTH, 98.2 2.1E-05 7.3E-10 80.7 17.0 162 443-604 77-266 (293)
133 3rjv_A Putative SEL1 repeat pr 98.2 4E-05 1.4E-09 74.5 18.1 171 426-606 6-199 (212)
134 1p5q_A FKBP52, FK506-binding p 98.2 6E-06 2.1E-10 86.8 12.7 144 471-636 146-292 (336)
135 1a17_A Serine/threonine protei 98.2 8.8E-06 3E-10 75.0 12.4 94 543-636 47-144 (166)
136 4f3v_A ESX-1 secretion system 98.2 3E-06 1E-10 85.2 9.4 138 476-618 106-250 (282)
137 2fbn_A 70 kDa peptidylprolyl i 98.2 2.1E-06 7.1E-11 82.6 7.9 171 446-637 9-185 (198)
138 1wao_1 Serine/threonine protei 98.2 4.9E-06 1.7E-10 92.0 11.5 114 518-634 17-135 (477)
139 3q49_B STIP1 homology and U bo 98.2 1.3E-05 4.4E-10 71.4 11.9 97 542-638 8-106 (137)
140 3u3w_A Transcriptional activat 98.2 0.00013 4.4E-09 74.8 21.0 158 447-604 81-266 (293)
141 3sz7_A HSC70 cochaperone (SGT) 98.2 6.1E-06 2.1E-10 76.6 9.6 96 542-637 10-107 (164)
142 1elw_A TPR1-domain of HOP; HOP 98.2 1.6E-05 5.5E-10 68.1 11.8 95 543-637 4-100 (118)
143 3gyz_A Chaperone protein IPGC; 98.2 6E-06 2.1E-10 75.5 9.2 101 471-608 35-137 (151)
144 1hxi_A PEX5, peroxisome target 98.1 4E-06 1.4E-10 73.5 7.2 94 545-638 19-114 (121)
145 3rkv_A Putative peptidylprolyl 98.1 1.2E-05 4E-10 74.4 10.8 84 575-684 63-147 (162)
146 3gw4_A Uncharacterized protein 98.1 2.1E-05 7E-10 75.4 12.8 116 453-568 4-132 (203)
147 3q7a_A Farnesyltransferase alp 98.1 8.9E-05 3E-09 77.0 17.9 192 441-637 88-330 (349)
148 2lni_A Stress-induced-phosphop 98.1 2.2E-05 7.6E-10 69.1 11.8 97 541-637 14-112 (133)
149 2vgx_A Chaperone SYCD; alterna 98.1 4.8E-06 1.6E-10 76.0 7.4 100 513-615 27-129 (148)
150 2kck_A TPR repeat; tetratricop 98.1 1.2E-05 3.9E-10 68.4 9.5 97 543-639 6-107 (112)
151 1na0_A Designed protein CTPR3; 98.1 2.9E-05 9.8E-10 67.3 12.2 96 543-638 9-106 (125)
152 3gw4_A Uncharacterized protein 98.1 6E-05 2.1E-09 72.0 15.6 129 440-568 25-172 (203)
153 2dba_A Smooth muscle cell asso 98.1 3.3E-05 1.1E-09 69.5 12.6 95 543-637 28-127 (148)
154 1wao_1 Serine/threonine protei 98.1 9.6E-06 3.3E-10 89.7 10.2 115 449-567 14-134 (477)
155 2hr2_A Hypothetical protein; a 98.0 3.3E-06 1.1E-10 76.7 5.0 92 546-637 14-130 (159)
156 2vyi_A SGTA protein; chaperone 98.0 3.2E-05 1.1E-09 67.6 11.5 97 542-638 11-109 (131)
157 2e2e_A Formate-dependent nitri 98.0 2.1E-05 7.2E-10 73.8 10.4 128 484-615 22-155 (177)
158 1a17_A Serine/threonine protei 98.0 6.9E-05 2.4E-09 68.9 13.8 124 476-603 17-145 (166)
159 4gcn_A Protein STI-1; structur 98.0 1.4E-05 4.9E-10 70.6 8.5 94 544-637 9-111 (127)
160 2dba_A Smooth muscle cell asso 98.0 7.4E-05 2.5E-09 67.1 13.5 117 471-621 27-145 (148)
161 2xev_A YBGF; tetratricopeptide 98.0 2.1E-05 7.3E-10 69.1 9.3 89 549-637 8-104 (129)
162 1elw_A TPR1-domain of HOP; HOP 98.0 6.1E-05 2.1E-09 64.4 12.0 77 543-619 38-116 (118)
163 3dss_A Geranylgeranyl transfer 98.0 0.00052 1.8E-08 70.8 20.3 190 422-618 90-318 (331)
164 2c2l_A CHIP, carboxy terminus 97.9 4.4E-05 1.5E-09 77.9 11.6 183 310-500 5-198 (281)
165 1elr_A TPR2A-domain of HOP; HO 97.9 5.3E-05 1.8E-09 66.3 10.6 95 543-637 4-107 (131)
166 3sz7_A HSC70 cochaperone (SGT) 97.9 6.1E-05 2.1E-09 69.6 11.0 75 542-616 44-120 (164)
167 3upv_A Heat shock protein STI1 97.9 5.5E-05 1.9E-09 66.3 10.0 109 474-619 6-122 (126)
168 2xcb_A PCRH, regulatory protei 97.9 5.8E-05 2E-09 68.0 10.3 100 516-618 27-129 (142)
169 1p5q_A FKBP52, FK506-binding p 97.9 5.6E-05 1.9E-09 79.3 11.1 96 543-638 147-259 (336)
170 4b4t_Q 26S proteasome regulato 97.8 0.00011 3.8E-09 79.8 13.7 187 450-636 13-243 (434)
171 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00015 5.1E-09 69.4 12.9 95 543-637 38-150 (198)
172 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 8.4E-05 2.9E-09 81.6 11.6 144 471-636 267-413 (457)
173 3q7a_A Farnesyltransferase alp 97.8 0.002 6.9E-08 66.8 21.1 172 440-616 122-344 (349)
174 1dce_A Protein (RAB geranylger 97.8 0.00078 2.7E-08 75.8 19.6 168 455-627 43-244 (567)
175 3k9i_A BH0479 protein; putativ 97.8 1.3E-05 4.5E-10 69.5 3.8 82 556-637 3-89 (117)
176 4gcn_A Protein STI-1; structur 97.7 0.00019 6.7E-09 63.1 11.2 56 445-500 12-70 (127)
177 2kck_A TPR repeat; tetratricop 97.7 0.00016 5.5E-09 61.1 10.3 97 511-609 10-111 (112)
178 3q49_B STIP1 homology and U bo 97.7 8.8E-05 3E-09 65.8 8.9 96 510-607 12-109 (137)
179 3dss_A Geranylgeranyl transfer 97.7 0.0015 5E-08 67.5 19.0 177 457-637 90-303 (331)
180 1elr_A TPR2A-domain of HOP; HO 97.7 7.9E-05 2.7E-09 65.1 8.1 114 473-620 5-123 (131)
181 3ro3_A PINS homolog, G-protein 97.7 0.00013 4.5E-09 66.3 9.8 132 473-636 10-156 (164)
182 3ro3_A PINS homolog, G-protein 97.7 0.00015 5.2E-09 65.8 10.1 136 441-605 9-159 (164)
183 2hr2_A Hypothetical protein; a 97.7 6.1E-05 2.1E-09 68.4 6.8 117 473-615 12-142 (159)
184 2xev_A YBGF; tetratricopeptide 97.7 0.00057 1.9E-08 59.7 13.1 74 545-618 41-119 (129)
185 3n71_A Histone lysine methyltr 97.6 0.00015 5.3E-09 79.6 10.7 124 518-641 320-467 (490)
186 1hxi_A PEX5, peroxisome target 97.6 0.00015 5.1E-09 63.3 8.7 92 515-609 25-119 (121)
187 2l6j_A TPR repeat-containing p 97.6 0.00012 4.2E-09 62.0 7.5 91 542-632 3-101 (111)
188 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00012 4.1E-09 76.9 8.8 146 473-638 180-328 (338)
189 3k9i_A BH0479 protein; putativ 97.6 5.3E-05 1.8E-09 65.6 5.1 98 521-618 4-104 (117)
190 1ihg_A Cyclophilin 40; ppiase 97.6 0.00028 9.5E-09 75.0 11.5 137 472-630 223-362 (370)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0004 1.4E-08 76.1 13.1 96 543-638 268-380 (457)
192 1ihg_A Cyclophilin 40; ppiase 97.6 0.00021 7.3E-09 75.9 10.5 63 575-637 273-335 (370)
193 4b4t_Q 26S proteasome regulato 97.6 0.00066 2.2E-08 73.6 14.4 158 480-637 12-203 (434)
194 1na3_A Designed protein CTPR2; 97.5 0.00032 1.1E-08 56.9 8.4 81 543-623 9-91 (91)
195 3rkv_A Putative peptidylprolyl 97.5 0.00017 5.7E-09 66.5 7.3 123 472-619 11-142 (162)
196 3ma5_A Tetratricopeptide repea 97.5 0.0003 1E-08 58.8 8.1 64 574-637 6-69 (100)
197 3n71_A Histone lysine methyltr 97.4 0.00029 9.9E-09 77.4 9.3 115 552-684 318-450 (490)
198 3qwp_A SET and MYND domain-con 97.4 0.00038 1.3E-08 75.3 9.2 114 552-683 296-427 (429)
199 2kat_A Uncharacterized protein 97.3 0.00033 1.1E-08 60.1 6.8 76 562-637 4-81 (115)
200 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0002 6.9E-09 75.1 6.0 112 509-637 181-292 (338)
201 3bee_A Putative YFRE protein; 97.3 0.00078 2.7E-08 55.4 8.2 69 572-640 3-74 (93)
202 1zu2_A Mitochondrial import re 97.2 0.00015 5E-09 65.7 3.0 85 554-638 13-120 (158)
203 3qww_A SET and MYND domain-con 97.2 0.00041 1.4E-08 74.9 6.6 104 556-677 311-432 (433)
204 2l6j_A TPR repeat-containing p 97.0 0.0013 4.5E-08 55.4 6.9 66 573-638 2-67 (111)
205 1zu2_A Mitochondrial import re 96.9 0.00063 2.2E-08 61.5 4.4 101 483-611 13-127 (158)
206 1na3_A Designed protein CTPR2; 96.9 0.0042 1.4E-07 49.9 8.7 63 575-637 9-71 (91)
207 3ly7_A Transcriptional activat 96.9 0.017 5.7E-07 59.9 14.9 139 470-636 192-337 (372)
208 3lvg_A Clathrin heavy chain 1; 96.8 0.0018 6.2E-08 68.2 7.6 356 64-436 57-510 (624)
209 1klx_A Cysteine rich protein B 96.8 0.0085 2.9E-07 53.3 10.6 111 486-639 9-127 (138)
210 1klx_A Cysteine rich protein B 96.6 0.0066 2.3E-07 54.0 8.7 106 454-568 8-122 (138)
211 1dce_A Protein (RAB geranylger 96.5 0.017 5.8E-07 64.8 13.4 146 486-636 43-219 (567)
212 3qww_A SET and MYND domain-con 96.4 0.011 3.7E-07 63.7 10.4 72 543-614 340-426 (433)
213 2kat_A Uncharacterized protein 96.4 0.011 3.6E-07 50.4 8.5 62 471-534 18-80 (115)
214 2kc7_A BFR218_protein; tetratr 96.4 0.0074 2.5E-07 49.6 7.1 64 549-612 6-72 (99)
215 3qwp_A SET and MYND domain-con 96.3 0.019 6.5E-07 61.9 11.8 72 544-615 330-416 (429)
216 3ma5_A Tetratricopeptide repea 96.3 0.011 3.8E-07 49.0 7.7 60 472-533 7-67 (100)
217 2kc7_A BFR218_protein; tetratr 96.2 0.016 5.5E-07 47.5 8.5 86 513-609 6-95 (99)
218 3mkq_A Coatomer beta'-subunit; 96.1 0.2 7E-06 58.7 20.0 48 450-499 661-708 (814)
219 3mkq_A Coatomer beta'-subunit; 95.9 0.11 3.9E-06 60.9 16.9 48 349-398 661-708 (814)
220 1wy6_A Hypothetical protein ST 95.9 0.24 8.2E-06 42.5 13.6 139 484-641 19-157 (172)
221 3u64_A Protein TP_0956; tetrat 95.9 0.021 7.1E-07 56.8 8.4 87 559-645 179-276 (301)
222 3ly7_A Transcriptional activat 95.8 0.06 2.1E-06 55.7 11.9 39 601-639 269-307 (372)
223 1pc2_A Mitochondria fission pr 95.7 0.039 1.3E-06 49.2 8.7 65 573-637 30-99 (152)
224 3mkq_B Coatomer subunit alpha; 94.7 0.47 1.6E-05 43.3 12.9 129 449-601 13-141 (177)
225 2v5f_A Prolyl 4-hydroxylase su 94.7 0.14 4.8E-06 42.5 8.9 73 543-615 5-86 (104)
226 3lvg_A Clathrin heavy chain 1; 94.6 0.0053 1.8E-07 64.8 -0.3 232 249-493 56-325 (624)
227 1pc2_A Mitochondria fission pr 94.6 0.29 9.8E-06 43.6 10.8 40 576-615 72-111 (152)
228 3bee_A Putative YFRE protein; 94.3 0.16 5.5E-06 41.3 8.1 74 541-615 4-82 (93)
229 4gns_B Protein CSD3, chitin bi 92.5 0.23 8E-06 56.7 8.3 53 583-635 345-397 (754)
230 2v5f_A Prolyl 4-hydroxylase su 91.5 1.1 3.6E-05 37.0 9.3 64 574-637 4-74 (104)
231 3ltm_A Alpha-REP4; protein eng 90.9 9.2 0.00032 35.7 16.8 83 242-324 90-172 (211)
232 3ltj_A Alpharep-4; protein eng 90.9 9.4 0.00032 35.3 16.7 88 238-325 81-168 (201)
233 3mkq_B Coatomer subunit alpha; 90.8 9.4 0.00032 34.7 17.2 125 418-570 17-142 (177)
234 1y8m_A FIS1; mitochondria, unk 90.5 3.4 0.00012 36.0 11.6 26 583-608 85-110 (144)
235 3ltm_A Alpha-REP4; protein eng 90.2 9 0.00031 35.8 16.0 183 107-321 17-200 (211)
236 3u64_A Protein TP_0956; tetrat 90.0 0.34 1.2E-05 48.1 5.5 75 489-568 180-265 (301)
237 1nzn_A CGI-135 protein, fissio 90.0 2.3 7.9E-05 36.3 10.0 75 541-615 33-114 (126)
238 3ltj_A Alpharep-4; protein eng 89.9 7.6 0.00026 36.0 15.1 175 113-319 18-193 (201)
239 1nzn_A CGI-135 protein, fissio 89.8 0.77 2.6E-05 39.3 6.8 89 573-687 33-126 (126)
240 2qx5_A Nucleoporin NIC96; mRNA 89.2 25 0.00087 39.4 20.5 80 284-366 300-382 (661)
241 1qsa_A Protein (soluble lytic 86.8 43 0.0015 37.3 28.1 123 486-616 228-356 (618)
242 2p58_C Putative type III secre 82.4 10 0.00035 30.5 9.0 86 421-511 22-107 (116)
243 3o48_A Mitochondria fission 1 81.4 4 0.00014 35.1 7.0 70 540-609 37-112 (134)
244 2wpv_A GET4, UPF0363 protein Y 80.9 48 0.0017 33.2 19.6 182 318-536 22-217 (312)
245 2uwj_G Type III export protein 80.9 9.7 0.00033 30.6 8.4 86 421-511 21-106 (115)
246 3lpz_A GET4 (YOR164C homolog); 80.6 51 0.0018 33.3 20.1 182 317-535 20-215 (336)
247 4gns_B Protein CSD3, chitin bi 79.5 11 0.00037 43.1 11.9 50 482-533 347-397 (754)
248 1y8m_A FIS1; mitochondria, unk 78.5 27 0.00094 30.3 11.4 45 592-636 59-104 (144)
249 2ff4_A Probable regulatory pro 78.2 9.6 0.00033 39.9 10.5 68 477-546 176-248 (388)
250 1v54_E Cytochrome C oxidase po 77.0 11 0.00039 30.4 7.8 55 561-615 31-85 (109)
251 4b4t_P 26S proteasome regulato 75.4 88 0.003 33.1 19.6 185 385-569 30-244 (445)
252 4h7y_A Dual specificity protei 73.8 6.3 0.00022 34.7 6.1 53 588-640 73-125 (161)
253 1v54_E Cytochrome C oxidase po 73.5 14 0.00046 30.0 7.4 63 487-551 25-87 (109)
254 4h7y_A Dual specificity protei 73.5 21 0.00073 31.4 9.3 107 468-609 9-128 (161)
255 2ff4_A Probable regulatory pro 71.8 6.1 0.00021 41.5 6.9 67 578-644 174-245 (388)
256 3lpz_A GET4 (YOR164C homolog); 71.3 91 0.0031 31.5 21.5 167 444-637 38-215 (336)
257 3ffl_A Anaphase-promoting comp 71.0 21 0.00071 32.0 9.0 112 447-572 26-151 (167)
258 3o48_A Mitochondria fission 1 69.7 22 0.00074 30.5 8.4 71 503-576 36-112 (134)
259 1wdy_A 2-5A-dependent ribonucl 69.4 67 0.0023 30.8 14.0 21 221-241 7-27 (285)
260 4fhn_B Nucleoporin NUP120; pro 67.7 87 0.003 37.9 16.8 51 478-533 818-868 (1139)
261 1oyz_A Hypothetical protein YI 67.3 93 0.0032 30.1 19.8 19 89-107 34-52 (280)
262 1wy6_A Hypothetical protein ST 67.2 62 0.0021 27.9 13.3 82 453-536 73-154 (172)
263 2l0z_A Glycoprotein G2; zinc-b 67.2 1.8 6E-05 28.0 0.8 13 765-777 16-29 (42)
264 3txn_A 26S proteasome regulato 67.0 98 0.0034 32.1 14.7 54 514-567 106-163 (394)
265 1n11_A Ankyrin; clathrin, BAND 67.0 1.2E+02 0.0043 31.4 18.3 15 134-148 22-36 (437)
266 4fhn_B Nucleoporin NUP120; pro 66.1 1.3E+02 0.0043 36.5 17.8 141 412-561 818-989 (1139)
267 1zbp_A Hypothetical protein VP 66.1 42 0.0014 32.7 10.7 24 587-610 112-135 (273)
268 3txn_A 26S proteasome regulato 65.1 1.3E+02 0.0046 31.1 24.3 219 376-640 104-345 (394)
269 2y69_E Cytochrome C oxidase su 64.9 21 0.00073 30.5 7.2 70 560-641 73-142 (152)
270 1zbp_A Hypothetical protein VP 63.3 23 0.0008 34.4 8.4 111 516-638 6-129 (273)
271 3esl_A Checkpoint serine/threo 62.7 97 0.0033 28.6 12.9 107 560-692 61-173 (202)
272 1oyz_A Hypothetical protein YI 61.9 1.2E+02 0.004 29.3 19.1 21 337-357 203-223 (280)
273 2y69_E Cytochrome C oxidase su 61.0 30 0.001 29.7 7.4 60 490-551 71-130 (152)
274 1qsa_A Protein (soluble lytic 60.4 2.1E+02 0.0071 31.7 33.5 252 127-399 76-347 (618)
275 4ady_A RPN2, 26S proteasome re 59.8 2.6E+02 0.0089 32.7 31.1 37 142-181 221-257 (963)
276 3mv2_A Coatomer subunit alpha; 57.5 71 0.0024 31.9 10.8 68 558-639 185-257 (325)
277 1qc6_A EVH1 domain from ENA/VA 56.5 4 0.00014 35.2 1.5 40 726-773 44-87 (130)
278 2uwj_G Type III export protein 56.3 78 0.0027 25.5 8.7 46 257-304 49-94 (115)
279 3ffl_A Anaphase-promoting comp 56.0 77 0.0026 28.3 9.7 27 249-275 124-150 (167)
280 2p58_C Putative type III secre 55.5 81 0.0028 25.5 9.7 49 256-306 49-97 (116)
281 1n11_A Ankyrin; clathrin, BAND 55.2 2E+02 0.0067 29.8 18.2 80 98-179 17-102 (437)
282 2qx5_A Nucleoporin NIC96; mRNA 53.5 49 0.0017 37.0 10.1 83 377-470 300-385 (661)
283 4b4t_R RPN7, 26S proteasome re 52.6 38 0.0013 35.8 8.8 97 443-539 133-240 (429)
284 2wpv_A GET4, UPF0363 protein Y 49.9 2.1E+02 0.0071 28.5 21.8 167 444-637 36-216 (312)
285 1wdy_A 2-5A-dependent ribonucl 48.9 1.8E+02 0.0062 27.6 14.1 52 190-241 7-61 (285)
286 4b4t_P 26S proteasome regulato 44.5 3E+02 0.01 28.9 17.9 50 420-469 30-84 (445)
287 4b4t_S RPN3, 26S proteasome re 43.7 3.4E+02 0.011 29.2 14.6 177 441-640 231-431 (523)
288 2lo3_A SAGA-associated factor 42.7 6.4 0.00022 25.7 0.4 13 733-745 15-27 (44)
289 3kea_A K1L; tropism, ANK repea 41.7 1.2E+02 0.004 29.6 10.0 15 258-272 103-117 (285)
290 3eiq_C Programmed cell death p 41.3 3E+02 0.01 28.0 17.0 64 444-507 220-288 (358)
291 3hra_A Ankyrin repeat family p 40.8 2E+02 0.0067 25.6 11.1 148 350-506 12-172 (201)
292 3eu9_A Huntingtin-interacting 38.6 2.3E+02 0.0079 25.9 13.0 15 351-365 117-131 (240)
293 4b4t_R RPN7, 26S proteasome re 38.5 1.4E+02 0.0048 31.4 10.5 96 474-569 133-234 (429)
294 3eu9_A Huntingtin-interacting 34.4 2.7E+02 0.0092 25.4 12.8 25 411-435 212-236 (240)
295 3twe_A Alpha4H; unknown functi 34.0 38 0.0013 18.9 2.5 17 668-684 3-19 (27)
296 2nsz_A Programmed cell death p 33.5 1.3E+02 0.0044 25.5 7.4 63 444-506 10-77 (129)
297 3ljn_A Hypothetical protein; a 32.0 2.8E+02 0.0095 27.7 11.5 16 451-466 180-195 (364)
298 3bqo_A Telomeric repeat-bindin 31.6 2.7E+02 0.0091 25.5 9.2 61 559-619 94-161 (211)
299 1j0t_A MIH, MOLT-inhibiting ho 31.6 5.7 0.00019 30.4 -1.3 14 733-746 20-33 (78)
300 3kea_A K1L; tropism, ANK repea 31.2 3.6E+02 0.012 25.9 14.4 150 254-408 66-225 (285)
301 2k0q_A Putative uncharacterize 30.8 16 0.00056 26.9 1.0 20 754-773 8-27 (74)
302 2hgo_A CASSIICOLIN; toxin, dis 29.0 11 0.00038 21.1 -0.1 13 766-778 8-22 (27)
303 2pk8_A Uncharacterized protein 28.3 46 0.0016 26.1 3.2 28 667-694 14-41 (103)
304 2nsz_A Programmed cell death p 28.2 1.4E+02 0.0046 25.3 6.7 22 284-305 13-34 (129)
305 3b7b_A Euchromatic histone-lys 27.6 3.5E+02 0.012 24.6 11.0 211 190-400 13-236 (237)
306 2zu6_B Programmed cell death p 27.3 4.6E+02 0.016 25.9 13.6 63 444-506 169-236 (307)
307 3mkr_B Coatomer subunit alpha; 26.7 1.4E+02 0.0049 29.7 7.3 60 566-639 187-248 (320)
308 1k1a_A B-cell lymphoma 3-encod 25.9 3.8E+02 0.013 24.4 12.6 13 453-465 159-171 (241)
309 2r9g_A AAA ATPase, central reg 25.6 1.6E+02 0.0056 27.0 6.9 63 374-437 14-84 (204)
310 2ion_A PDCD4, programmed cell 25.3 1.3E+02 0.0043 26.4 6.1 63 444-506 12-79 (152)
311 2ion_A PDCD4, programmed cell 23.8 1.1E+02 0.0037 26.9 5.3 23 283-305 14-36 (152)
312 4ady_A RPN2, 26S proteasome re 23.8 9.2E+02 0.031 28.1 28.3 85 448-535 497-588 (963)
313 4a1g_A Mitotic checkpoint seri 22.6 3.2E+02 0.011 23.9 8.0 75 560-640 52-132 (152)
314 3esl_A Checkpoint serine/threo 22.0 2.4E+02 0.0082 26.0 7.4 55 424-478 97-152 (202)
315 3a8g_A NitrIle hydratase subun 21.8 96 0.0033 28.4 4.5 79 662-742 10-114 (207)
316 3hra_A Ankyrin repeat family p 21.6 4.1E+02 0.014 23.3 11.8 57 350-406 113-173 (201)
317 4a1g_A Mitotic checkpoint seri 21.3 2.2E+02 0.0074 25.0 6.7 31 475-505 104-134 (152)
318 2wvi_A Mitotic checkpoint seri 21.1 3.5E+02 0.012 23.9 8.1 76 559-640 46-127 (164)
319 3ygs_P Procaspase 9; apoptosis 20.9 1.6E+02 0.0055 23.4 5.4 63 176-238 26-90 (97)
320 3aji_A 26S proteasome non-ATPa 20.8 4.7E+02 0.016 23.6 12.3 178 315-506 9-199 (231)
321 1k1a_A B-cell lymphoma 3-encod 20.5 4.7E+02 0.016 23.7 9.9 43 393-439 131-176 (241)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=392.23 Aligned_cols=485 Identities=12% Similarity=0.017 Sum_probs=344.1
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 004024 137 KSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML--EKNEISWNGLLAAYVQNGRIEEACMLFESKA-- 212 (778)
Q Consensus 137 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 212 (778)
|.+..+...|..++.+++..|+.++..|.+.|++++|+.+|++|. .||..++..++.+|.+.|++++|+++|+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 333444444444444444555555555555555555555555543 3455555555555555555555555555552
Q ss_pred cCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcC
Q 004024 213 NWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNG 292 (778)
Q Consensus 213 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 292 (778)
..++.+++.++.+|.++|++++|.++|+++.+.+... ..+.+.+. ++.-...++.+|+.++.+|.+.|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHHHHHHHHcC
Confidence 2344445555555555555555555555332222000 00000000 00111224667777777777777
Q ss_pred ChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHH--H-HHhhc----cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 293 KVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARE--L-FEAMT----CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~--i-~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
++++|+++|++|.+. +...+..+...+...+..+.+.. + +..+. .....+++.++.+|.++|++++|.++
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 777777777777642 33334444433333222211111 0 22222 22344567778899999999999999
Q ss_pred hhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 363 FDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 363 f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++...|++++|.+++..+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 788999999999999999999999999998765 3367788889999999999999999999998654 667
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 517 (778)
..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998854 468899999999999999999999999999842 33678999999999
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHc
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD--AATWGALLGACRLY 588 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~Ll~a~~~~ 588 (778)
.+.|++++|.++|+.+.+.. ..+...|..++++|.+.|++++|.++++++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999998642 336888999999999999999999999887 55787 77999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|++++|+..++++++++|+++.+|..|+++|...|+|++|.+.++.+.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-41 Score=387.15 Aligned_cols=504 Identities=8% Similarity=-0.025 Sum_probs=301.2
Q ss_pred HhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCChHHHHHHHHhc
Q 004024 103 LLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--KRDVVSWNTMLSGYAQNGYADAARRIFDRM 180 (778)
Q Consensus 103 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 180 (778)
.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|. .||..+|+.++.+|.+.|++++|+.+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 344555555555555555556666666666666666666666666553 355555666666666666666666666665
Q ss_pred c--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHh
Q 004024 181 L--EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYA 258 (778)
Q Consensus 181 ~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~ 258 (778)
. ++|..+++.++.+|.+.|++++|+++|+++...+.. ...+.+.+.. +.-.+.++.+|+.++.+|.
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp CGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHHHHHHH
Confidence 2 455566666666666666666666666543322200 0000000000 0001223445555555555
Q ss_pred cCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHH---HHhCCCC----CcchHHHHHHHHhccCChHHH
Q 004024 259 QNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMI---FDAMPEK----NTVSWNAMIAGYVQTKRMDMA 328 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l---~~~m~~~----~~~t~~~ll~~~~~~~~~~~a 328 (778)
+.|++++|.++|++|... +...|..+...+...+..+.+... +..+... +..+|+.++..|.+.|++++|
T Consensus 212 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 555555555555544322 122233333322222211111100 1111111 223344445555555555555
Q ss_pred HHHHHhhc--cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcc
Q 004024 329 RELFEAMT--CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGER 403 (778)
Q Consensus 329 ~~i~~~~~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 403 (778)
.++++.+. ++++.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+.++|+.+|++|.... +
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 55555555 25555555555556666666666655555532 244555666666666666666666666655321 2
Q ss_pred cCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHH
Q 004024 404 LNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIA 480 (778)
Q Consensus 404 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~ 480 (778)
.+..++..+...+.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 234455555555666666666666666555532 34566788888888888888888888887743 46778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCC--hHHHHHHHHHHhh
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPN--SKHYTCMVDLLGR 555 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~lv~~l~r 555 (778)
+|.+.|++++|+++|++|.+.. ..+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 8888888888888888888742 2356788888888888888888888888886543 66787 7899999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 556 AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
.|++++|.+.++++ ...| +..+|..|..+|...|+.++|...++++++++|+++..+..|+++|..
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999887 3345 688999999999999999999999999999999999999999999864
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.3e-27 Score=264.27 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=175.3
Q ss_pred HHHHHhhhCCCCC-----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccc---------cHH
Q 004024 358 HARNLFDRMPQHD-----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA---------SLE 423 (778)
Q Consensus 358 ~A~~~f~~m~~~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------~~~ 423 (778)
.+..+++++.++. ...++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444555555432 24588899999999999999999999999999999999999999998654 488
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.|.++++.|.+.|+.||..+||+||++|+++|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999954 899999999999999999999999999999
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
+.|+.||..||+++|.+|++.|++++|.++|++|... ++.|+..+|+.+++.+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999876 9999999999999998763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.4e-25 Score=240.99 Aligned_cols=359 Identities=12% Similarity=0.087 Sum_probs=274.1
Q ss_pred HHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChHHHHH
Q 004024 226 FVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP---VKDVFTWTAMVSGYVQNGKVDEARM 299 (778)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 299 (778)
+.+.|++++|.+.+..+. +.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++|+.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344445555554444432 3345556666666777777777777766543 2345567777777777777777777
Q ss_pred HHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-C
Q 004024 300 IFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--H-D 370 (778)
Q Consensus 300 l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d 370 (778)
.|+++.. | +..++..+..++...|++++|...+..+. +.+..++..+...|.+.|++++|.+.|+++.+ | +
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 7777653 3 44567777777777777777777777766 34455666777777777888888777777643 2 3
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
..+|+.+...|.+.|++++|+..|+++...+ +.+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------------------------------------PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------CCcHHHHHHHHHH
Confidence 4677777777888888888888887776532 2344556677888
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|...|++... .+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999987743 3578899999999999999999999999998 5665 56788889999999999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.+.|+.+.+. .+++...+..+..++.+.|++++|.+.++++ ...|+ ..+|..+..++...|+++.|...+++++++
T Consensus 291 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999998864 3447788999999999999999999999987 45565 779999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCC
Q 004024 605 EPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~ 624 (778)
+|+++..|..++.+|...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999999987764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=3.2e-26 Score=255.10 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=173.1
Q ss_pred hHHHHHHHHHhhcCcccC-cccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------H
Q 004024 388 EDSLRLFIEMKRYGERLN-RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS---------V 457 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~---------~ 457 (778)
..+..+.+++.+.++.+. ...++.+|++|++.|++++|.++++.|.+.|+.||..+||+||.+|+++|. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445667778887776644 346788999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 458 EEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 458 ~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
++|.++|++|.. ||.++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999954 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004024 534 NRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLY 588 (778)
Q Consensus 534 ~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+. |+.||..+|++|+++|++.|++++|.+++++| ...|+..||+.++..++..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 876 99999999999999999999999999999999 6899999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=9.5e-24 Score=229.54 Aligned_cols=344 Identities=14% Similarity=0.125 Sum_probs=269.6
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 286 SGYVQNGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 286 ~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
..+.+.|++++|+..+.++.+ | +...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 345556666666666655542 2 34445555556666666666666666655 44556677777777777777777
Q ss_pred HHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccc-cchHHHhcccccHHHHHHHHHHHHHc
Q 004024 360 RNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPF-TSVLSTCANLASLELGKQLHGQLVKV 435 (778)
Q Consensus 360 ~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~ 435 (778)
...|+++.+ | +..+|..+...|.+.|++++|+..|+++... .|+..+. ..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777776642 3 2345777777777777777777777777653 3555433 33445566677777787777777765
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMV 511 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~ 511 (778)
. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... +.|+ ..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHH
Confidence 3 45677889999999999999999999999864 3567899999999999999999999999988 5675 56888
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACRLY 588 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~~~ 588 (778)
.+..++...|++++|.+.|+.+.+. .| +...|..+..+|.+.|++++|.+.++++ .. +++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999998763 44 4678999999999999999999999987 22 34678999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|+++.|...+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998876
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.9e-23 Score=230.18 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=233.9
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhcc
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQT 322 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~ 322 (778)
++..|..++..|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 444555555555555555555555554431 234445555555555555555555555443210
Q ss_pred CChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe------eehhhHH------------HHHHhc
Q 004024 323 KRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC------ISWAAII------------AGYAQS 384 (778)
Q Consensus 323 ~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li------------~~~~~~ 384 (778)
+.+..++..+...|.+.|++++|.+.|+++.+.++ ..|..++ ..|.+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22334445555555555555555555555433221 3333333 335556
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 464 (778)
|++++|+..|+++.... +.+..++..+..+|.++|++++|.+.|
T Consensus 157 ~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC------------------------------------VWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp TCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666665422 346677888999999999999999999
Q ss_pred HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-HH------------HHHHhccCcHHHHHH
Q 004024 465 EEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV-GI------------LSACSHTGLVEKGTE 528 (778)
Q Consensus 465 ~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~-~l------------l~a~~~~g~~~~a~~ 528 (778)
+++.+ .+..+|+.++..|...|++++|++.|+++.. ..|+..+.. .+ ..+|.+.|++++|.+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98854 5788999999999999999999999999997 677765433 33 678999999999999
Q ss_pred HHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 529 YFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 529 ~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
+|+.+.+...-.|. ..+|.+++.++.+.|++++|++.++++ ...| +..+|..+..+|...|+++.|...+++++++
T Consensus 279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999864222222 568999999999999999999999987 4455 5889999999999999999999999999999
Q ss_pred CCCCCchHHHHH------------HHhhhcC--CcchHHHHHHHHHhCCCccCCc
Q 004024 605 EPENAGMYVLLS------------NLYAASG--RWGDVSKVRLKMRDRGVKKVTG 645 (778)
Q Consensus 605 ~p~~~~~y~~L~------------~~y~~~g--~~~~a~~~~~~m~~~g~~k~~g 645 (778)
+|+++..+..|+ +.|...| ++.+..++++.+++..++..|.
T Consensus 359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999 6687778 4444455555555544444443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.1e-21 Score=214.51 Aligned_cols=415 Identities=10% Similarity=0.014 Sum_probs=298.3
Q ss_pred HhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcC
Q 004024 218 SWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYVQNG 292 (778)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 292 (778)
.+..+...+.+.|++++|...|+++. .||..+|..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 45566777888888888888888776 56777888888888888888888888876642 24557777888888888
Q ss_pred ChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHH---HHHHHHhcCChhHHHHH
Q 004024 293 KVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNT---MITGYAQSGEITHARNL 362 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~---Li~~y~k~g~~~~A~~~ 362 (778)
++++|+..|+++... +......++..+........+.+.+..+. .++....+. .............+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 888888888776542 33344444444333333333322221111 000000000 00001111111111222
Q ss_pred hhhCCC---------C-CeeehhhHHHHHHh---cCChhHHHHHHHHHhh-----cCccc--------CcccccchHHHh
Q 004024 363 FDRMPQ---------H-DCISWAAIIAGYAQ---SGYSEDSLRLFIEMKR-----YGERL--------NRSPFTSVLSTC 416 (778)
Q Consensus 363 f~~m~~---------~-d~~~~~~li~~~~~---~g~~~~Al~l~~~m~~-----~g~~p--------d~~t~~~ll~a~ 416 (778)
+..... + +...|......+.. .|++++|+.+|+++.. ....| +..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 222111 1 12233334444443 8999999999999887 31122 234566677778
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
...|+++.|...+..+.+..-. ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999999887643 88889999999999999999999998865 367789999999999999999999
Q ss_pred HHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004024 494 LFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--- 569 (778)
Q Consensus 494 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--- 569 (778)
.|++..+ ..| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 326 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 326 DFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998 455 45678888899999999999999999988642 225678889999999999999999999877
Q ss_pred -CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 570 -PFEPD----AATWGALLGACRL---YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 570 -~~~p~----~~~~~~Ll~a~~~---~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|-.|+ ..+|..+...+.. .|+++.|...+++++++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32333 4489999999999 999999999999999999999999999999999999999999999988763
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.6e-20 Score=213.17 Aligned_cols=421 Identities=10% Similarity=0.049 Sum_probs=197.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHh
Q 004024 155 VSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVK 228 (778)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~ 228 (778)
..|..+...+.+.|++++|+..|+++. +.+..+|..+..+|...|++++|++.++++++.+ ...+..+...|..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 345555666666666666666666665 2345566666666666677777766666665432 2233444444444
Q ss_pred cCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChHHHHHHHH
Q 004024 229 QKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVK------DVFTWTAMVSGYVQNGKVDEARMIFD 302 (778)
Q Consensus 229 ~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~ 302 (778)
.|++++|...|+.+. .++...+..+..+...+...+|...++++... ........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 444444444443221 11111222233333444445555555554321 11122333444444444444444444
Q ss_pred hCCCCCcc---hHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe--------
Q 004024 303 AMPEKNTV---SWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC-------- 371 (778)
Q Consensus 303 ~m~~~~~~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-------- 371 (778)
.....+.. ....+...+...+ -......|++++|..+|+++.+.++
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 43332221 1111111111110 0000111345555555555443221
Q ss_pred --eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 372 --ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 372 --~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
.+|..+...+...|++++|+..|++.... .|+..++..+...+...|+++.|...+..+.+.. +.+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--------- 309 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEY--------- 309 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTC---------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCC---------
Confidence 13444455666677777777777776653 2333334444444444455555555544444432 223
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
..+|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+
T Consensus 310 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 310 ----------------------PPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444445555555555555555555544 2232 2344444445555555555555
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHc----------CC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEP----DAATWGALLGACRLY----------GK 590 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p----~~~~~~~Ll~a~~~~----------g~ 590 (778)
+|+.+.+.. +.+...+..+..++.+.|++++|.+.++++ |-.+ ....+..+...+... |+
T Consensus 366 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 555544321 112344555555555555555555555443 1111 111233333444444 66
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666665554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-20 Score=211.38 Aligned_cols=240 Identities=11% Similarity=-0.031 Sum_probs=183.5
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|..+...|...|++++|+..|+++.... |+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 345555566666666666666666665543 334444455555566666666666666665543 44566778888999
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 527 (778)
.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+ ..| +..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998743 4677888999999999999999999999987 445 4567888888999999999999
Q ss_pred HHHHHchhhcCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 528 EYFYSMNRDYGVIPN----SKHYTCMVDLLGR---AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~----~~~y~~lv~~l~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
++|+.+.+...-.|+ ...|..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|+.+.|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988764333333 4488899999999 99999999999887 3344 4778999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHH
Q 004024 599 EVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~ 616 (778)
+++++++|+++..+..+.
T Consensus 473 ~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 473 EESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHH
Confidence 999999999877776663
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=4.4e-20 Score=204.50 Aligned_cols=353 Identities=14% Similarity=0.074 Sum_probs=223.5
Q ss_pred ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHH
Q 004024 216 VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYV 289 (778)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 289 (778)
...+..+...|.+.|++++|..+|+++. +.+..+|..+...|.+.|++++|...|+++.. .+..+|..+...|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4578999999999999999999999876 56788999999999999999999999998763 35678999999999
Q ss_pred hcCChHHHHHHHHhCCCCC---c---chHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHh
Q 004024 290 QNGKVDEARMIFDAMPEKN---T---VSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLF 363 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~~---~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f 363 (778)
+.|++++|+..|+++.+.+ . .++..+...+... .+..+...|.+.|++++|...|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987642 2 4555554432111 1122333455556666666666
Q ss_pred hhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 364 DRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 364 ~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
+++.+ .+...|..+...|.+.|++++|+..|+++.... +.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~~ 210 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------------NDN 210 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH------------------------------------CSC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------CCC
Confidence 55432 234455566666666666666666666655421 122
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTM------------IAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~l------------i~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
..++..+...|.+.|++++|...|+++.. | +...|..+ ...|...|++++|++.|+++.+ +.|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 33344444445555555555555544422 1 22223322 5666666777777777777666 445
Q ss_pred Ch-----hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 004024 506 DD-----ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AAT 577 (778)
Q Consensus 506 d~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 577 (778)
+. ..+..+..++.+.|++++|..+++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ...|+ ..+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 42 24555666666777777777777666543 23 4566666777777777777777777665 44554 445
Q ss_pred HHHHHHH------------HHHcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHhhhcCCcchH
Q 004024 578 WGALLGA------------CRLYG-----KTELAEKAAEV-IFEMEPENAG----------MYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 578 ~~~Ll~a------------~~~~g-----~~~~a~~~~~~-~~~l~p~~~~----------~y~~L~~~y~~~g~~~~a 628 (778)
|..+..+ +...| +.+.+.+.+++ .++..|++.. .+..+..+|...|+.+..
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5544422 22333 55677888876 7777787532 344555555555554443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=5e-20 Score=209.02 Aligned_cols=428 Identities=10% Similarity=0.017 Sum_probs=205.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHhhCC---CCCcchHHHHHHHHH
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFEMMP---KRDVVSWNTMLSGYA 165 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 165 (778)
...+..+...|.+.|++++|...|+++. +.+..+|..+..+|.+.|++++|++.|+++. ..++.+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3456666777777777777777777654 2355566666667777777777777766654 234455666666666
Q ss_pred cCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCC
Q 004024 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVR 245 (778)
Q Consensus 166 ~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (778)
+.|++++|+..|+.+. .+.......+..+...+...+|...++.++...+.. .+
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~-------------------------~~ 158 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR-------------------------GS 158 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------------------------cc
Confidence 6666666666665332 111112222333344444455555555554431100 00
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCee---hHHHHHHHHHhc--------CChHHHHHHHHhCCCC---Ccc-
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVF---TWTAMVSGYVQN--------GKVDEARMIFDAMPEK---NTV- 310 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~---~~~- 310 (778)
........+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+++.+. +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 1111223334444555555555555555444332 222332222221 3556666666665542 111
Q ss_pred ------hHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 311 ------SWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 311 ------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
++..+...+...|++++|...+..+.. ..|+...|..+...|...
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESIN-----------------------------LHPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCCCHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----------------------------cCCCchHHHHHHHHHHHh
Confidence 233333333444444444444444330 012233344444445555
Q ss_pred CChhHHHHHHHHHhhcCcccC-cccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLN-RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
|++++|+..|+++.... |+ ..++.. +...|.+.|++++|...
T Consensus 290 ~~~~~A~~~~~~~~~~~--~~~~~~~~~-----------------------------------l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN--PEYPPTYYH-----------------------------------RGQMYFILQDYKNAKED 332 (537)
T ss_dssp SCCHHHHHHHHHHHHHC--TTCHHHHHH-----------------------------------HHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC--CCCHHHHHH-----------------------------------HHHHHHhcCCHHHHHHH
Confidence 55555555555554422 22 111111 22223333333333333
Q ss_pred HHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcC-
Q 004024 464 FEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYG- 538 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 538 (778)
|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|.+.|+.+.+...
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 333321 1233344444444444444444444444444 2222 22344444444444444444444444332210
Q ss_pred ---CCCChHHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 539 ---VIPNSKHYTCMVDLLGRA----------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 539 ---~~p~~~~y~~lv~~l~r~----------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.......+..+..+|.+. |++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111122233445556666 8888888888776 2344 467888899999999999999999999999
Q ss_pred cCCCCCchHH
Q 004024 604 MEPENAGMYV 613 (778)
Q Consensus 604 l~p~~~~~y~ 613 (778)
+.|+++....
T Consensus 491 ~~~~~~~~~~ 500 (537)
T 3fp2_A 491 LARTMDEKLQ 500 (537)
T ss_dssp HC--CHHHHH
T ss_pred hCCCcHHHHH
Confidence 9998865544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.3e-17 Score=177.82 Aligned_cols=182 Identities=10% Similarity=0.047 Sum_probs=137.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-HH--
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-MV-- 511 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~-- 511 (778)
+.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+... +.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHY 228 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHH
Confidence 34556677788888999999999999988755 4677888888999999999999999999887 4565433 22
Q ss_pred ----------HHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 004024 512 ----------GILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAAT 577 (778)
Q Consensus 512 ----------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~ 577 (778)
.+...+...|++++|...++.+.+...-.|.. ..|..+...+.+.|++++|.+.+++. ...| +..+
T Consensus 229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 22456778888888888888877643222211 33556778888888999888888776 3345 5778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
|..+...+...|+++.|...++++++++|+++.....|..++..
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888888888999999999999999999888777777766543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=4.4e-17 Score=173.74 Aligned_cols=298 Identities=11% Similarity=0.047 Sum_probs=213.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcC
Q 004024 312 WNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSG 385 (778)
Q Consensus 312 ~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 385 (778)
+..+...+...|++++|...+..+. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.+.|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 3444444555555555555555544 33445555566666666666666666665432 23355666677777777
Q ss_pred ChhHHHHHHHHHhhcCccc---CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 386 YSEDSLRLFIEMKRYGERL---NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 386 ~~~~Al~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
++++|+..|++..... | +.... ....+.+.. ......+...|...|++++|.+
T Consensus 86 ~~~~A~~~~~~~~~~~--~~~~~~~~~------~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN--PSEQEEKEA------ESQLVKADE----------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHH------HHHHHHHHH----------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhcC--CcccChHHH------HHHHHHHHH----------------HHHHHHHHHHHHHccCHHHHHH
Confidence 7777777777776532 3 11110 000011110 1122345678899999999999
Q ss_pred HHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 463 AFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 463 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
.|+++.+ .+...|..+...|...|++++|++.++++.+ ..| +..++..+...+...|++++|.+.|+...+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9998854 4678899999999999999999999999998 455 556788888999999999999999999876422
Q ss_pred CCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 539 VIPNSKHYT------------CMVDLLGRAGRLDEAQNLMKNM-PFEPD-A----ATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 539 ~~p~~~~y~------------~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~----~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
-. ...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|...+++
T Consensus 220 ~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22 22222 3367789999999999999887 33444 3 2355677889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998876
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=5.8e-15 Score=173.50 Aligned_cols=526 Identities=13% Similarity=0.112 Sum_probs=295.2
Q ss_pred HHHHHhhcCCchhhhHhhhhCCCC------ChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChh
Q 004024 67 AITTHMRNGCCDSALHVFNSMPRR------SSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLS 140 (778)
Q Consensus 67 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 140 (778)
.+..|...|.+.+|+.+++++... +....|.|+.+-.+. +.....+...+.. .+...-+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---NYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---hccHHHHHHHHHhCCCHH
Confidence 345566777777777666665422 224455555555544 3333333333332 222344555666667777
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhh
Q 004024 141 AARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWN 220 (778)
Q Consensus 141 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 220 (778)
+|..+|++.... ....+.++ -..|++++|.++.++. .+..+|..+..++...|++++|.+.|.+. .+...|.
T Consensus 1067 EAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 777777765311 11112222 1556677777666655 23556667777777777777777776554 4455666
Q ss_pred HHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHH
Q 004024 221 SLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEAR 298 (778)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 298 (778)
-++..+.+.|++++|.+.+.... .++....+.++..|++.+++++..... ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 67777777777777777775433 233333445667777777766433332 2334455666666777777777777
Q ss_pred HHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHH
Q 004024 299 MIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAII 378 (778)
Q Consensus 299 ~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li 378 (778)
.+|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..++...|++..|......+ ..+...+..++
T Consensus 1216 ~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli 1287 (1630)
T 1xi4_A 1216 LLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELI 1287 (1630)
T ss_pred HHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHH
Confidence 777664 36677777777777777777777665 34566666666666777777776665542 22333455677
Q ss_pred HHHHhcCChhHHHHHHHHHhhcC-cccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC------chhHHHHHHHHH
Q 004024 379 AGYAQSGYSEDSLRLFIEMKRYG-ERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA------GCFVGNALLVMY 451 (778)
Q Consensus 379 ~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~------~~~~~~~Li~~y 451 (778)
.-|...|.+++|+.+++.-.... -..+.+|....+.+-.+.+.+.+..+.|..- ..+++ +..+|..++-.|
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHH
Confidence 77778888888888886654322 1111223333444444555555555554422 22222 566778888888
Q ss_pred HhcCCHHHHHHH-------------HHhccC--CChhHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHC
Q 004024 452 CKCGSVEEAYHA-------------FEEIVD--KDVISWNTMIAGYARHG---------------FGKDALMLFESMKTV 501 (778)
Q Consensus 452 ~k~g~~~~A~~~-------------f~~m~~--~d~~~~~~li~~~~~~g---------------~~~~Al~l~~~m~~~ 501 (778)
.+-|+++.|... |..... .|+..|...+.-|..++ +.+.+.++|.+.
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~--- 1442 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV--- 1442 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---
Confidence 888888888732 222211 36666777777776555 555555555421
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhh------------c-CCCC----------ChHHHHHH-HHHHhhcC
Q 004024 502 GIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD------------Y-GVIP----------NSKHYTCM-VDLLGRAG 557 (778)
Q Consensus 502 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------------~-~~~p----------~~~~y~~l-v~~l~r~g 557 (778)
|--|-...|..-+. -.+...+.+|+ .+.|..+ | ++.. +..-+.-+ ..+|.+.|
T Consensus 1443 ~~l~lik~yl~~vq-~~n~~~Vneal--~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~ 1519 (1630)
T 1xi4_A 1443 KQLPLVKPYLRSVQ-NHNNKSVNESL--NNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNN 1519 (1630)
T ss_pred CChHHhHHHHHHHH-HhcchhhhHHH--HHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 11222222211111 00111111111 0111100 0 0000 00001122 23455668
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 558 RLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 558 ~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
+|+.|.++.++.+. |.--+.+....||.+.++.++.-..+. .+...|+...-.+...=+.|-+.++
T Consensus 1520 ~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1520 RWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred cHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 89999888887753 334456677889999998888888777 5567788777777788888877765
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.2e-17 Score=175.45 Aligned_cols=319 Identities=14% Similarity=0.150 Sum_probs=137.2
Q ss_pred cCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhc--
Q 004024 259 QNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT-- 336 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-- 336 (778)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+..+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4556666666666664443 6666666666666666666666543 355566666666666666666666555554
Q ss_pred cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 337 CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|.+++|...|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 34456667777777777777776666643 55567777777777777777777777755 3566666777
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
.++|+++.|.+.+..+ .++.+|..++.++...|+++.|......+. .++.-...++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777766665 266777777777777777777766666544 344444467777888888888888888
Q ss_pred HHHHCCCCCCh---hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 497 SMKTVGIKPDD---ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP------NSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 497 ~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+... ..|.. .|..+++-+-.+.+.+.+.++.|.+- -+++| +..+|.-++.+|..-|.++.|...+-
T Consensus 232 ~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 7764 44432 24444444555566677777666532 35555 46778899999999999999888765
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 568 NMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 568 ~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+-| |++.--..+.....+-.|.|.-.++..-.++-.|.
T Consensus 307 ~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 307 NHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred hCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 543 33333334445555667777666666666655553
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.4e-14 Score=170.22 Aligned_cols=465 Identities=12% Similarity=0.101 Sum_probs=336.1
Q ss_pred CCCcchHHHHHHHHHcCCChhHHH-H---HHhh------CCCCCcch----------HHHHHHHHHcCCChHH-HHHHHH
Q 004024 120 QRDLVSWNVMISGYVRNKSLSAAR-N---LFEM------MPKRDVVS----------WNTMLSGYAQNGYADA-ARRIFD 178 (778)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~-~---~f~~------m~~~d~~~----------~~~li~~~~~~g~~~~-A~~~~~ 178 (778)
..|+.++|+|...|...++-.+.. + .|+. ..++|+.. ---||...-++|.+.. |+-+.+
T Consensus 870 ~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~ 949 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR 949 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 368889999999998765543321 1 0110 01233321 2334444444444432 222322
Q ss_pred hcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcc------cCCccHhhHHHHHHHhcCChhHHHHHHhhCC-C-----CC
Q 004024 179 RMLEKNEISWNGLLAAYVQNGRIEEACMLFESKA------NWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP-V-----RD 246 (778)
Q Consensus 179 ~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-----~d 246 (778)
+.|...|..++.- +-+.-+++.++.. ..++.--...+..|...|.+.+|.++++++. . .+
T Consensus 950 ---r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 950 ---RKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred ---hcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 2466666666622 1111222332211 2244445677888999999999999999987 2 23
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChH
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~ 326 (778)
....|.|+.+..+. +..+..++.++...-+ ...+...+.+.|.+++|..+|++.... ....+.++. ..++++
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nld 1093 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLD 1093 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHH
Confidence 45667777776666 4566666665555333 556788899999999999999997532 222223322 778899
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
+|.++..++ .++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++.
T Consensus 1094 rAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1094 RAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 999998876 45778999999999999999999999775 666788889999999999999999999877644 444
Q ss_pred ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcC
Q 004024 407 SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHG 486 (778)
Q Consensus 407 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 486 (778)
...+.+..++++.+.++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 1235 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhC
Confidence 44445888999999888644432 2 345556667999999999999999999985 48999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
++++|++.+++. -+..+|..+-.+|...|.+..|...... +.-+++.+..++..|.+.|.+++|+.++
T Consensus 1236 e~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1236 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999976 3568899999999999999999887643 3446778889999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCC-----CCCchHHHHHHHhhhcCCcchHHH
Q 004024 567 KNM-PFEPD-AATWGALLGACRLY--GKTELAEKAAEVIFEMEP-----ENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 567 ~~m-~~~p~-~~~~~~Ll~a~~~~--g~~~~a~~~~~~~~~l~p-----~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
+.. +.+|. ...|.-|.-.+.+. +++.++.+.|..-..+.| ++...+.-+.-+|.+.|+|+.|..
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 766 55554 44676666666555 466777777777777766 677789999999999999999984
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.8e-17 Score=176.17 Aligned_cols=278 Identities=12% Similarity=0.118 Sum_probs=113.7
Q ss_pred hcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCC-
Q 004024 73 RNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPK- 151 (778)
Q Consensus 73 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 151 (778)
+.|++++|...++....| .+|..|..++.+.|++++|.+.|.+. +|...|..++..+...|++++|++.++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 446677777777777444 47778888888888888888887654 4555777777777778888888886655542
Q ss_pred -CCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcC
Q 004024 152 -RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQK 230 (778)
Q Consensus 152 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 230 (778)
+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|+..|..+ ..|..|++++.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 455677778888888888877777664 366677888888888888888888888766 46777788888888
Q ss_pred ChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---
Q 004024 231 RLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--- 307 (778)
Q Consensus 231 ~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 307 (778)
++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++.....
T Consensus 163 ~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 163 EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp CHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred cHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 888888877777 367778888888888888888766665544 33333445777777778888887777776543
Q ss_pred --CcchHHHHHHHHhccCChHHHHHHHHhhc--------cccccHHHHHHHHHHhcCChhHHHHHhhh
Q 004024 308 --NTVSWNAMIAGYVQTKRMDMARELFEAMT--------CKNVASWNTMITGYAQSGEITHARNLFDR 365 (778)
Q Consensus 308 --~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 365 (778)
..+|...++.+--+.+++.+..+.|..-+ ..+...|..++-.|.+-++++.|....-+
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 22233333333334456666666665544 14566777777777777777777665433
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=5.6e-16 Score=163.26 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILS 515 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~ 515 (778)
+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGV 201 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 344455666666666677777666666543 2345566666677777777777777777766 3343 445666666
Q ss_pred HHhccCcHHHHHHHHHHchhhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYG-------VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACR 586 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~ 586 (778)
.+...|++++|..+|+.+.+... .......+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 77777777777777776654321 1334678888899999999999999988876 2334 4678899999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh-hhcCCcc
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY-AASGRWG 626 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y-~~~g~~~ 626 (778)
..|+.+.|...++++++++|+++..+..|+.+| ...|+.+
T Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999988 4555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=1.7e-16 Score=170.40 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=147.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHC
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNT---------------MIAGYARHGFGKDALMLFESMKTV 501 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~---------------li~~~~~~g~~~~Al~l~~~m~~~ 501 (778)
+..++..+...|.+.|++++|.+.|+++.. | +...+.. .+..+...|++++|++.|+++.+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 209 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR- 209 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH-
Confidence 344555566666666666666666665533 1 1112211 13333488899999999999988
Q ss_pred CCCCC---hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 004024 502 GIKPD---DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DA 575 (778)
Q Consensus 502 g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~ 575 (778)
..|+ ..++..+...+...|++++|..+|+.+.+. .| +...|..+..++.+.|++++|.+.++++ ...| +.
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 4555 567888888999999999999999988764 34 4678899999999999999999999887 3345 47
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHhhhcCCcchHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-----------AGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.+|..+..++...|+++.|...+++++++.|++ +..|..|+.+|...|++++|..+++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 789999999999999999999999999999988 7889999999999999999998865
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.2e-15 Score=158.70 Aligned_cols=259 Identities=12% Similarity=0.029 Sum_probs=199.2
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.+..+...+...|++++|+.+|+++.... +.+...+..+...+...|+.++|...+..+.+.. +.+..++..+...|.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 1112222233444455555555555555555443 445677788899999
Q ss_pred hcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHH
Q 004024 453 KCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 453 k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 527 (778)
..| ++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhHHHHH
Confidence 999 99999999998865 3577899999999999999999999999998 4454 567777888999999999999
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC-------CCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF-------EPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~-------~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
++|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ +- ..+..+|..+...+...|+++.|..
T Consensus 180 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 180 RFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999998753 2235788899999999999999999998776 10 2336799999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+++++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999886543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.6e-14 Score=163.54 Aligned_cols=399 Identities=10% Similarity=0.088 Sum_probs=244.0
Q ss_pred CccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCeehHHHHHHH-H
Q 004024 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDVFTWTAMVSG-Y 288 (778)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~-~ 288 (778)
++..|..++. +.+.|++++|+.+|+++. +.+...|..++..+.+.|++++|..+|++... |++..|...+.. .
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3456666666 356677777777777664 34555677777777777777777777776553 444455555542 2
Q ss_pred HhcCChHHHHH----HHHhCCC-----C-CcchHHHHHHHHhc---------cCChHHHHHHHHhhcc-ccc---cHHHH
Q 004024 289 VQNGKVDEARM----IFDAMPE-----K-NTVSWNAMIAGYVQ---------TKRMDMARELFEAMTC-KNV---ASWNT 345 (778)
Q Consensus 289 ~~~g~~~~A~~----l~~~m~~-----~-~~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~~-~~~---~~~~~ 345 (778)
...|+.++|.+ +|++... + +...|...+..... .|+++.|+.+|+.++. |+. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 33455555543 4443321 1 33344444443322 3455555555555551 111 11211
Q ss_pred HHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh------hcC---cccCc--------cc
Q 004024 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK------RYG---ERLNR--------SP 408 (778)
Q Consensus 346 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~------~~g---~~pd~--------~t 408 (778)
........|. ..+..++. ...+++.+|..++.++. +.. +.|+. ..
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1111000000 00000000 12344555666555422 111 12221 11
Q ss_pred ccchHHHhcc----cccH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHh
Q 004024 409 FTSVLSTCAN----LASL----ELGKQLHGQLVKVGFEAGCFVGNALLVMYCK-------CGSVE-------EAYHAFEE 466 (778)
Q Consensus 409 ~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~~f~~ 466 (778)
|...+.-... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 1111111110 1121 35566777776652 5567788888888775 68877 89999998
Q ss_pred ccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 467 IVD---K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 467 m~~---~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
..+ | +...|..++..+.+.|+.++|.++|+++.+ +.|+. ..|......+.+.|++++|.++|+...+. .
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---c
Confidence 764 3 577899999999999999999999999998 67764 36788888888899999999999988753 3
Q ss_pred CC-hHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----hH
Q 004024 541 PN-SKHYTCMVDL-LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG----MY 612 (778)
Q Consensus 541 p~-~~~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~----~y 612 (778)
|. ...|.....+ +...|+.++|.+++++. ...| ++.+|..++......|+.+.|..+++++++..|.++. .+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 32 3333332222 33689999999998866 3334 4788999999988999999999999999998777655 66
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...+......|+.+++.++.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677788889999999998887653
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=2.2e-14 Score=160.79 Aligned_cols=333 Identities=13% Similarity=0.047 Sum_probs=202.8
Q ss_pred hHHHHHHHHHhc----CCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChHHHHHHHHhCCCC-CcchHHHHHH
Q 004024 248 VSWNTMITGYAQ----NNYLAEAQRLFEEAPVK-DVFTWTAMVSGYVQ----NGKVDEARMIFDAMPEK-NTVSWNAMIA 317 (778)
Q Consensus 248 ~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~-~~~t~~~ll~ 317 (778)
..+..|...|.. .++.++|.+.|++..+. +...+..|...|.. .+++++|+..|++..+. +...+..+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444444 44455555555443322 33344444444444 44555555555544333 3344444444
Q ss_pred HHhc----cCChHHHHHHHHhhc-cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC-CCeeehhhHHHHHHhcCCh
Q 004024 318 GYVQ----TKRMDMARELFEAMT-CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ-HDCISWAAIIAGYAQSGYS 387 (778)
Q Consensus 318 ~~~~----~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~ 387 (778)
.|.. .++.++|.+.+.... ..+...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|...
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g--- 232 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFG--- 232 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---
Confidence 4443 445555555555444 3334444455555554 4555555555544322 1222333333333320
Q ss_pred hHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 004024 388 EDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEAYHA 463 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~ 463 (778)
....++.++|...+....+.| +...+..|..+|.. .++.++|...
T Consensus 233 ----------------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 233 ----------------------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp ----------------------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ----------------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 001334444444444444332 23344556666766 7888999999
Q ss_pred HHhccC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC---cHHHHHHHHHHch
Q 004024 464 FEEIVD-KDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG---LVEKGTEYFYSMN 534 (778)
Q Consensus 464 f~~m~~-~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~ 534 (778)
|++..+ .+...+..+...|... ++.++|++.|++..+.| +...+..+...+...| +.++|.++|+...
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 888765 4667777888888877 88999999999988865 3445566666666656 7889999998887
Q ss_pred hhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 004024 535 RDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p 606 (778)
+. .+...+..|..+|.. .+++++|.+.+++.--..++..+..|...+.. .+|.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 356778888888888 88999999999887323467788888888887 8999999999999999985
Q ss_pred C---CCchHHHHHHHhhh
Q 004024 607 E---NAGMYVLLSNLYAA 621 (778)
Q Consensus 607 ~---~~~~y~~L~~~y~~ 621 (778)
+ ++.....|+.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 77777777777664
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=1.6e-14 Score=149.75 Aligned_cols=245 Identities=8% Similarity=-0.008 Sum_probs=147.4
Q ss_pred ccCChHHHHHHHHhhcc--cc--ccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHH
Q 004024 321 QTKRMDMARELFEAMTC--KN--VASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIE 396 (778)
Q Consensus 321 ~~~~~~~a~~i~~~~~~--~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 396 (778)
..|++..|....+.+.. |+ ......+...|...|+++.|...++....++..++..+...+...|+.++|++.|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34555555555444331 11 122334556677777777777766665444555666666667777777777777777
Q ss_pred HhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH
Q 004024 397 MKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWN 476 (778)
Q Consensus 397 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~ 476 (778)
+...+..|+ +..++..+...|.+.|++++|.+.|++ ..+...|.
T Consensus 91 ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~ 134 (291)
T 3mkr_A 91 EMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMA 134 (291)
T ss_dssp HHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHH
T ss_pred HHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHH
Confidence 665443343 344455667788888999999999888 45777888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH---HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV---GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
.++..|.+.|+.++|++.|+++.+ ..|+..... +.+..+...|++++|..+|+.+.+.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------- 195 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------- 195 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----------------
Confidence 888888899999999999998887 356643111 1112223345556666655555543
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch-HHHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD-VSKVR 632 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~-a~~~~ 632 (778)
.++++.+|+.+..++...|+++.|+..++++++++|+++.++..++.++...|++++ +.+++
T Consensus 196 -----------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 196 -----------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp -----------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 122344555555555555555555555555555556555555555555555555554 23454
Q ss_pred HHHHh
Q 004024 633 LKMRD 637 (778)
Q Consensus 633 ~~m~~ 637 (778)
+.+.+
T Consensus 259 ~~~~~ 263 (291)
T 3mkr_A 259 SQLKD 263 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.6e-15 Score=162.81 Aligned_cols=276 Identities=12% Similarity=0.061 Sum_probs=147.1
Q ss_pred cCChHHHHH-HHHhCCCC-------CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 291 NGKVDEARM-IFDAMPEK-------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 291 ~g~~~~A~~-l~~~m~~~-------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
.|++++|+. .|.+.... +...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 456666666 66654421 23456666666777777777777777666 44556677777777777777777
Q ss_pred HHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccc----------------hHHHhcccc
Q 004024 360 RNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTS----------------VLSTCANLA 420 (778)
Q Consensus 360 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~----------------ll~a~~~~~ 420 (778)
...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+...... .+..+...|
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777776542 345677777888888888888888888877643 33332221 122222444
Q ss_pred cHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEA-GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
++++|...+..+.+..-.. +.. +|..+...|...|++++|++.|+++.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPD-------------------------------VQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444432111 234 44444444445555555555555444
Q ss_pred HCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----
Q 004024 500 TVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP---- 573 (778)
Q Consensus 500 ~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---- 573 (778)
+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++++|.+.++++ ...|
T Consensus 245 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 245 S--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred H--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4 2232 2344444444555555555555555444321 113444555555555555555555555444 1111
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 574 --------DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 574 --------~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
...+|..|..++...|+.+.|..++++.++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 145677777777777777777666655443
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=186.25 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=119.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-------DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345567799999999999999999999998763 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCc-HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 509 TMVGILSACSHTGL-VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 509 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
||+++|.++++.|. .++|.++|++|..+ |+.||..+|+|++....|.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999998 57899999999987 99999999999999888887666665554443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=4.6e-14 Score=159.84 Aligned_cols=400 Identities=12% Similarity=0.111 Sum_probs=260.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHH-HH
Q 004024 184 NEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMIT-GY 257 (778)
Q Consensus 184 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~-~y 257 (778)
|..+|..++. +.+.|++++|+.+|+++++.. ...|..++..+.+.|++++|+.+|++.. .|++..|...+. ..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3445555555 244555556665555555432 2345555666666666666666666654 357777887775 33
Q ss_pred hcCCCHHHHHH----HHhhCC-----C-CCeehHHHHHHHHHh---------cCChHHHHHHHHhCCCC-Cc---chHHH
Q 004024 258 AQNNYLAEAQR----LFEEAP-----V-KDVFTWTAMVSGYVQ---------NGKVDEARMIFDAMPEK-NT---VSWNA 314 (778)
Q Consensus 258 ~~~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~-~~---~t~~~ 314 (778)
...|+.++|++ +|++.. . .+...|...+....+ .|++++|..+|++.... +. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 45677776665 676542 1 355678888877655 78999999999998763 21 22222
Q ss_pred HHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhh-------CC------CCC--------eee
Q 004024 315 MIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDR-------MP------QHD--------CIS 373 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------m~------~~d--------~~~ 373 (778)
........+. ..+..++. .+.++++.|+.++.. +. .|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 2211111110 01111111 122334444443332 11 111 134
Q ss_pred hhhHHHHHHhc----CCh----hHHHHHHHHHhhcCcccC-cccccchHHHhcc-------cccHH-------HHHHHHH
Q 004024 374 WAAIIAGYAQS----GYS----EDSLRLFIEMKRYGERLN-RSPFTSVLSTCAN-------LASLE-------LGKQLHG 430 (778)
Q Consensus 374 ~~~li~~~~~~----g~~----~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~-------~~~~~-------~a~~i~~ 430 (778)
|...+.-...+ ++. ++|+.+|++.... .|+ ...|......+.+ .|+++ .|..++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 55554332222 222 3677888888764 343 3344444444443 67776 8899998
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 431 QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DV-ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 431 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
..++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~ 388 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ART 388 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCC
Confidence 888643466788999999999999999999999998854 3 33 58999999999999999999999999874 444
Q ss_pred -hhHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHH
Q 004024 507 -DITMVGILSA-CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD--AATW 578 (778)
Q Consensus 507 -~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~ 578 (778)
...|...... +...|+.++|..+|+...+..+ -+...|..+++.+.+.|+.++|..++++. |..|+ ..+|
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233332222 2358999999999999886532 25788999999999999999999999886 34443 4589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...+.....+|+.+.+..+.+++.+..|++
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999999999999999998853
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3.4e-15 Score=160.27 Aligned_cols=231 Identities=12% Similarity=0.072 Sum_probs=190.4
Q ss_pred CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 370 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 44567778888888888888888888877642 335567788899
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-----------HHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-----------MVGILS 515 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-----------~~~ll~ 515 (778)
.|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ +.|+... +..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 99999999999999998854 4678899999999999999999999999988 4565332 223467
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~ 593 (778)
.+...|++++|.++|+.+.+...-.++...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999999876443336889999999999999999999999887 3344 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|...+++++++.|+++.++..++.+|...|++++|.+.++.+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888753
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3.3e-15 Score=160.41 Aligned_cols=223 Identities=13% Similarity=0.117 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHH
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGY 381 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 381 (778)
+...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34446666666777777777777777666 45566777777778888888888888777643 3456788888888
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCccc-----------ccchHHHhcccccHHHHHHHHHHHHHcCCC-CchhHHHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSP-----------FTSVLSTCANLASLELGKQLHGQLVKVGFE-AGCFVGNALLV 449 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t-----------~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~ 449 (778)
.+.|++++|+..|+++.... |+... +..+...+...|++++|...+..+.+..-. .+..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887643 32211 112234445555555555555555554311 14455555555
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEK 525 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 525 (778)
.|.+.|++++|.+.|++..+ .+..+|+.+...|...|++++|++.|+++.+ +.|+ ..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 66666666666666655432 2445555555556666666666666655555 3343 3344455555555555555
Q ss_pred HHHHHHHch
Q 004024 526 GTEYFYSMN 534 (778)
Q Consensus 526 a~~~~~~m~ 534 (778)
|..+|+.+.
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.3e-17 Score=186.92 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=117.9
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
++||+||.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~Gl 175 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLGW 175 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHHH
Confidence 57888888888888888888888887642 2345677888888999999
Q ss_pred HhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFG-KDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 526 (778)
|+.|++++|.++|++|.+ ||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+.++..
T Consensus 176 ck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999999999854 8999999999999999985 78999999999999999999999999888776555544
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcC
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAG 557 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g 557 (778)
.+++-.+.-.+.-.|.+.+...|.|+|.+.+
T Consensus 256 rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 4432222111111122445556788888766
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1e-14 Score=162.49 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=127.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHH------------
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYAR------------ 484 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~------------ 484 (778)
++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555554444433 34455566666677777777777777766543 2 34455555444432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHH-HH
Q 004024 485 -------HGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVD-LL 553 (778)
Q Consensus 485 -------~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~-~l 553 (778)
.+..++|+..|++..+ ..|+ ..++..+...+...|++++|.++|+...+. ...|.. ..+..+.. .+
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Confidence 2345778888888877 4554 456778888999999999999999987653 222211 12233333 23
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...|+.++|++.+++. .+.|+...+...+ +.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999998876 5677755444333 44577888999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeEE
Q 004024 633 LKMRDRGVKKVTGYSWL 649 (778)
Q Consensus 633 ~~m~~~g~~k~~g~s~i 649 (778)
++..+.|-.-....+|+
T Consensus 454 ~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----------------
T ss_pred HHHHhcCCCCCcHhhcC
Confidence 98877664433344554
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.6e-13 Score=153.82 Aligned_cols=353 Identities=11% Similarity=0.026 Sum_probs=250.6
Q ss_pred CChhHHHHHHHHHhc----CCCHHHHHHHHhhCCC-CCeehHHHHHHHHHh----cCChHHHHHHHHhCCCC-CcchHHH
Q 004024 245 RDEVSWNTMITGYAQ----NNYLAEAQRLFEEAPV-KDVFTWTAMVSGYVQ----NGKVDEARMIFDAMPEK-NTVSWNA 314 (778)
Q Consensus 245 ~d~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~-~~~t~~~ 314 (778)
.|+..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+. +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355566666666666 6777777777766543 355566777777777 77777777777776554 5556666
Q ss_pred HHHHHhc----cCChHHHHHHHHhhc-cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC-CCeeehhhHHHHHHhc
Q 004024 315 MIAGYVQ----TKRMDMARELFEAMT-CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ-HDCISWAAIIAGYAQS 384 (778)
Q Consensus 315 ll~~~~~----~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~ 384 (778)
+...|.. .+++++|...+.... ..++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~- 195 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR- 195 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-
Confidence 6666665 566777777766665 3444555556666655 4555666665555432 233344444444443
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEA 460 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A 460 (778)
.....++.++|...+....+.| +......|..+|.. .++.++|
T Consensus 196 ------------------------------g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 196 ------------------------------GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp ------------------------------TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ------------------------------CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 0000344445555554444443 34556667778876 7899999
Q ss_pred HHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----CcHHHHHHHH
Q 004024 461 YHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT-----GLVEKGTEYF 530 (778)
Q Consensus 461 ~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~ 530 (778)
.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+..+...+... ++.++|.++|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999998865 567788888888888 899999999999998764 445666666677766 8999999999
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRAG---RLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFE 603 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~ 603 (778)
....+. + +...+..+..+|.+.| +.++|.+.+++.--..++..|..|...+.. .+|.++|...++++.+
T Consensus 320 ~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 998764 2 4566777888887767 789999999887333578889999999988 8999999999999988
Q ss_pred cCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 604 MEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 604 l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
.. ++..+..|+.+|.. .++.++|.+.++...+.|.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 57889999999998 8999999999999887653
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.8e-14 Score=151.44 Aligned_cols=256 Identities=11% Similarity=-0.024 Sum_probs=186.3
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|+++.|...+..+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 1122233334444455555555555555555442 445667777888889
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVD--K-DVISWNTM--------------IA-GYARHGFGKDALMLFESMKTVGIKP-DDITMVGI 513 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d~~~~~~l--------------i~-~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~l 513 (778)
+.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|++.++++.+. .| +...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 99999999999888754 2 23333333 22 367788999999999999884 45 56678888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKT 591 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~ 591 (778)
...+...|++++|.++++.+.+.. +.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 889999999999999999987642 235778899999999999999999999886 3344 477899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHhhhcCCcchHHHHHHH
Q 004024 592 ELAEKAAEVIFEMEPE------------NAGMYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~------------~~~~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999988753
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.1e-13 Score=145.36 Aligned_cols=250 Identities=14% Similarity=0.076 Sum_probs=136.2
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCC
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGY 386 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 386 (778)
......+...|++++|..+++.+. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444443 23334444555555555555555555554432 233455566666666666
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchH--------------H--HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVL--------------S--TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll--------------~--a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
+++|+..|+++... .|+.......+ . .+...|++++|...+..+.+.. +.+..++..+...
T Consensus 105 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 66666666666653 23322222221 2 2556667777777777666554 3355666667777
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHH
Confidence 7777777777777776543 3455666777777777777777777777666 3343 44555555666666666666
Q ss_pred HHHHHHchhhcCCCC----------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 527 TEYFYSMNRDYGVIP----------NSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p----------~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
.++|+.+.+...-.+ +...|..+..++.+.|+.++|.++++
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666665543211100 23444455555555555555555544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.6e-13 Score=152.68 Aligned_cols=380 Identities=12% Similarity=0.003 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHH-hhCCCCChhHHHHHHHHHhcCCCH
Q 004024 185 EISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIF-DRMPVRDEVSWNTMITGYAQNNYL 263 (778)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~d~~~~~~li~~y~~~g~~ 263 (778)
...|+.|...+...|+.++|++.|.++++... ... ........++|+.+...|...|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~--------------------~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQ--------------------QEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------------hcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 45678888888888888888888876543100 000 000012234455555555555555
Q ss_pred HHHHHHHhhCC-------CC----CeehHHHHHHHHHhc--CChHHHHHHHHhCCC--C-CcchHHHHHHH---HhccCC
Q 004024 264 AEAQRLFEEAP-------VK----DVFTWTAMVSGYVQN--GKVDEARMIFDAMPE--K-NTVSWNAMIAG---YVQTKR 324 (778)
Q Consensus 264 ~~A~~~f~~m~-------~~----d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~--~-~~~t~~~ll~~---~~~~~~ 324 (778)
++|...|++.. .+ ...+++.+..++... +++++|+..|++..+ | +...+..+..+ +...++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 55555554321 11 122344443344433 356677777766643 3 34444444333 334455
Q ss_pred hHHHHHHHHhhc---cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHH
Q 004024 325 MDMARELFEAMT---CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLF 394 (778)
Q Consensus 325 ~~~a~~i~~~~~---~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~ 394 (778)
.++|.+.+..++ +.+..++..+...+.+ .|+.++|.+.|++... .+...|..+...|.+.|++++|+..|
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 566666666655 3444455555444443 3566777777776542 34456777777888888888888888
Q ss_pred HHHhhcCcccCcccc-cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 004024 395 IEMKRYGERLNRSPF-TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---K 470 (778)
Q Consensus 395 ~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~ 470 (778)
.+..+. .|+.... ..+...+... +... ... ....+.......+..+.|...|++..+ .
T Consensus 271 ~~al~~--~p~~~~~~~~lg~~y~~~-----~~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 271 KKALEY--IPNNAYLHCQIGCCYRAK-----VFQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHH-----HHHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHh--CCChHHHHHHHHHHHHHH-----HHHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 887763 3543321 1111111100 0000 000 000111111122345677777776643 4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH----HHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT----MVGILS-ACSHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t----~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
+..+|..+...|...|++++|++.|++..+. .|+... +..+.. ...+.|+.++|++.|....+ +.|+...
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~ 407 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSRE 407 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHH
Confidence 5667888999999999999999999999884 444322 222222 34578999999999988764 4565433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.... .+.+.+++++. ...| ++.+|..|...+...|+.++|...+++++++.|.+|.+..-++
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2222 22333333332 2234 5779999999999999999999999999999999887766554
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=5e-13 Score=138.46 Aligned_cols=242 Identities=9% Similarity=-0.025 Sum_probs=151.5
Q ss_pred hcCCCHHHHHHHHhhCCCCCe----ehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVKDV----FTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFE 333 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~ 333 (778)
...|++..|...+++....++ .....+..+|...|++++|+..++....++..++..+...+...++.++|.+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345677777777766554332 2334556677777777777776665433355666677777777777777777777
Q ss_pred hhc-----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc
Q 004024 334 AMT-----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP 408 (778)
Q Consensus 334 ~~~-----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 408 (778)
.+. +.+..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|++++|.+.|+++.... |+..
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~- 164 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT- 164 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH-
Confidence 765 23455667777888889999999999888 4566778888888999999999999999988753 5532
Q ss_pred ccchH----HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 004024 409 FTSVL----STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAG 481 (778)
Q Consensus 409 ~~~ll----~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 481 (778)
...+. ..+...|++++|..++..+.+. .+.+..+++.+...|.+.|++++|...|++..+ .+..+|+.++..
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~ 243 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11111 1122235555555555555554 244555555555566666666666666655432 244455555555
Q ss_pred HHHcCChHH-HHHHHHHHHHCCCCCCh
Q 004024 482 YARHGFGKD-ALMLFESMKTVGIKPDD 507 (778)
Q Consensus 482 ~~~~g~~~~-Al~l~~~m~~~g~~pd~ 507 (778)
+...|+.++ +.++++++.+ +.|+.
T Consensus 244 ~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 244 SQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 555555543 3455555555 44544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=4.2e-13 Score=132.60 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=157.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~l 513 (778)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55667788889999999999999999998865 3677899999999999999999999999998 67764 577788
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 004024 514 LSACSHT-----------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGA 580 (778)
Q Consensus 514 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 580 (778)
..++... |+.++|...|+...+. .| +...+..+..+|.+.|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888889 9999999999998754 45 4678889999999999999999999887 22267889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887643
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.6e-13 Score=133.22 Aligned_cols=216 Identities=12% Similarity=0.025 Sum_probs=173.4
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.|..+...+...|++++|+..|++.... . .+..++..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~--~~~~~~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWEL-----------------------------------H--KDITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------S--CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------h--ccHHHHHHHHHHHH
Confidence 4555556666666666666666666543 3 34556667778888
Q ss_pred hcCCHHHHHHHHHhccC--C-C-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 453 KCGSVEEAYHAFEEIVD--K-D-------VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
+.|++++|.+.|++..+ | + ..+|..+...|...|++++|++.|++... +.|+. ..+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhH
Confidence 88888888888887754 2 1 57888889999999999999999999988 56663 34566788
Q ss_pred HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
+++|.+.++.+... .| +...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988752 34 4667888999999999999999999887 3334 57789999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 600 VIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 600 ~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3.2e-13 Score=138.12 Aligned_cols=243 Identities=12% Similarity=-0.065 Sum_probs=187.4
Q ss_pred HHhcCChhHHHHHHHHHhhcCc--cc-CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 381 YAQSGYSEDSLRLFIEMKRYGE--RL-NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 381 ~~~~g~~~~Al~l~~~m~~~g~--~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
+...|++++|+..|+++..... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445777778888877776532 11 23455566666777788888888887777664 45678888999999999999
Q ss_pred HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 458 EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 458 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
++|.+.|++..+ .+..+|..+...|...|++++|++.|+++.+ ..|+.......+..+...|+.++|..++....
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998865 4678899999999999999999999999998 67877766666667788899999999998877
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
... .++...+ .++..+...+..++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|++
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 642 2333334 4777788888899999998876 33332 5788999999999999999999999999999987
Q ss_pred CchHHHHHHHhhhcCCcchHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...+ +.++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5444 66777888888887654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.4e-12 Score=131.56 Aligned_cols=239 Identities=9% Similarity=0.012 Sum_probs=185.5
Q ss_pred ccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 340 VASWNTMITGYAQSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 340 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..... |+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccc----------
Confidence 45678899999999999999999987643 566788889999999999999999999887632 1110
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLF 495 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~ 495 (778)
...+....++..+...|.+.|++++|...|++... |+ ...+...|+.++|++.+
T Consensus 73 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 73 -----------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHH
Confidence 00000145666778888888888888888887754 34 23466678888999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004024 496 ESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP 573 (778)
Q Consensus 496 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 573 (778)
+++.. ..|+. ..+..+...+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.+++. ...|
T Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 129 EAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887 45643 467777778888899999999998887642 235677888999999999999999998876 3344
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 004024 574 -DAATWGALLGACRLYGKTELAEKAAEVIFEME------PENAGMYVLLSNL 618 (778)
Q Consensus 574 -~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~y~~L~~~ 618 (778)
+..+|..+..++...|+.+.|...+++++++. |++...+..|..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 47789999999999999999999999999998 8877777666554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1.8e-12 Score=132.32 Aligned_cols=246 Identities=10% Similarity=-0.043 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
.+...+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 3445566677777777777777776543 233467777777777777777777777776632 22111
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALML 494 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l 494 (778)
....+..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.
T Consensus 73 ----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 112234455555555666666665555432 2344555556666666666666666
Q ss_pred HHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC---HHHHHHHHHhC
Q 004024 495 FESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR---LDEAQNLMKNM 569 (778)
Q Consensus 495 ~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~---~~eA~~~~~~m 569 (778)
|++..+ ..|+.. .+..+...+...+++++|.+.|+.+.+. .| +...+..+..++...|+ +++|...+++.
T Consensus 131 ~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 131 MEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 665554 244333 2333331333444666666666655542 23 24445555555555555 44444444433
Q ss_pred ----CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 570 ----PFEPD------AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 570 ----~~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.-.|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 11232 24777888888999999999999999999999998888888777655543
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=2.7e-12 Score=141.84 Aligned_cols=311 Identities=8% Similarity=-0.011 Sum_probs=171.1
Q ss_pred HHHHHHhcCCCH---HHHHHHHhhCCCCCeehHHHHHHHHHhcC-----ChHHHHHHHHhCCCC-CcchHHHHHHHHhcc
Q 004024 252 TMITGYAQNNYL---AEAQRLFEEAPVKDVFTWTAMVSGYVQNG-----KVDEARMIFDAMPEK-NTVSWNAMIAGYVQT 322 (778)
Q Consensus 252 ~li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~-~~~t~~~ll~~~~~~ 322 (778)
.|...|...|+. ++|...|++..+.++..+..|...+...| ++++|+..|++..++ +...+..+...|...
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~ 119 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQY 119 (452)
T ss_dssp TCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHC
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 333444444444 55555555554444444555544333333 445566665555444 444555555555544
Q ss_pred CChHHH---HHHHHhhc-cccccHHHHHHHHHHhcCC----hhHHHHHhhhCCCCCeeehhhHHHHHHhcC---ChhHHH
Q 004024 323 KRMDMA---RELFEAMT-CKNVASWNTMITGYAQSGE----ITHARNLFDRMPQHDCISWAAIIAGYAQSG---YSEDSL 391 (778)
Q Consensus 323 ~~~~~a---~~i~~~~~-~~~~~~~~~Li~~y~k~g~----~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~Al 391 (778)
+..+.+ .+.+.... ..++.....|...|...+. .+.+..++......++..+..|...|.+.| +.++|+
T Consensus 120 ~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 120 PHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp GGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 433222 22222222 3455666777777777764 344444555555555556777777777777 667777
Q ss_pred HHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhc
Q 004024 392 RLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC----GSVEEAYHAFEEI 467 (778)
Q Consensus 392 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~m 467 (778)
..|++....| +++...+..|..+|... ++.++|.+.|++.
T Consensus 200 ~~~~~aa~~g------------------------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 200 KQMEAGVSRG------------------------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTT------------------------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC------------------------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 7777666554 33333334556666544 6888888888877
Q ss_pred cCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----cHHHHHHHHHHchhhcCC
Q 004024 468 VDKDVISWNTMIAG-Y--ARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG-----LVEKGTEYFYSMNRDYGV 539 (778)
Q Consensus 468 ~~~d~~~~~~li~~-~--~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~ 539 (778)
...++..+..|... | ...|+.++|++.|++..+.| +......+...+. .| +.++|.++|....
T Consensus 244 a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----- 314 (452)
T 3e4b_A 244 APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----- 314 (452)
T ss_dssp GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence 73356677777766 3 45788888888888888766 4445555555554 45 7888888887765
Q ss_pred CCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 004024 540 IPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~ 607 (778)
.-+...+..|..+|.. ..++++|.+.+++.--.-++.....|...|.. ..|.++|...++++.+..+.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 2245556666666655 33788888888776322334445555555442 34788888888888776543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.7e-11 Score=123.60 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=146.1
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456777777888888888888888776532 2234556667777
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888877643 3566777788888888888888888888776444554 34566666777778888888
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.++|+.+.+.. ..+...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++.++
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88887776531 224666777777888888888888877765 3333 4556777777777788888888888888888
Q ss_pred CCCCCchHH
Q 004024 605 EPENAGMYV 613 (778)
Q Consensus 605 ~p~~~~~y~ 613 (778)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887755443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=7.9e-12 Score=126.01 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=172.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSA 516 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a 516 (778)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 56678888999999999999999998854 46788999999999999999999999999884 45 55678888889
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~ 593 (778)
+...|++++|.++|+.+.+ .+..| +...+..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 24556 5677888999999999999999999887 3344 47789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999887643
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.6e-11 Score=120.85 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+ ..| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 3566777888899999999999999998754 4577889999999999999999999999988 345 456788888
Q ss_pred HHHhcc-CcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004024 515 SACSHT-GLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK 590 (778)
Q Consensus 515 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~ 590 (778)
..+... |++++|..+|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999886 234443 677888899999999999999998876 3344 47788899999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFEMEP-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+.|...++++++..| +++..+..++.++...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888999999999999999999998888753
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=5.6e-12 Score=126.08 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=126.8
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~~~ 67 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFANLL 67 (243)
T ss_dssp ------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHH
Confidence 455556666666666666666666665421 22344555666677
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 527 (778)
.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|.
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777776643 35666777777777777777777777777763 33 4455666666777777777777
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
++++.+.+.. ..+...+..+..++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++++
T Consensus 146 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777766431 224556677777777777777777777665 2223 46677777777777888888888888888888
Q ss_pred CCCCchHHHHHHHhhhc
Q 004024 606 PENAGMYVLLSNLYAAS 622 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~ 622 (778)
|+++..+..++.+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 87777776666554433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=2.3e-11 Score=119.74 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=161.3
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHHH
Confidence 3456667777777788888888777776532 2234466677788
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARH-GFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEK 525 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 525 (778)
|...|++++|.+.|++..+ .+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887743 4667888888888999 999999999999887444454 4567778888889999999
Q ss_pred HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 526 GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE--PDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~--p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
|..+|..+.+. .| +...+..+..++.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999888764 33 4777888999999999999999999876 233 35667777778888999999999999999
Q ss_pred HhcCCCCCchHHHHH
Q 004024 602 FEMEPENAGMYVLLS 616 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~ 616 (778)
.+..|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999987766654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=3.3e-11 Score=122.86 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=176.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCee----ehhhHHHHH
Q 004024 311 SWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDCI----SWAAIIAGY 381 (778)
Q Consensus 311 t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~----~~~~li~~~ 381 (778)
.+......+...|++++|...+..+. +.+..++..+...|.+.|++++|...|++..+ ++.. +|..+...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455666777777777777777776 44556778888888888888888888887654 2222 377888889
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
...|++++|+..|++..... +.+..++..+...|.+.|++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999998887632 234456778889999999999999
Q ss_pred HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCc---HHHHHHHHHHch
Q 004024 462 HAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGL---VEKGTEYFYSMN 534 (778)
Q Consensus 462 ~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~ 534 (778)
..|++..+ .+...|..+...+...+++++|++.|++..+ ..|+ ...+..+...+...|. .++|...|+.+.
T Consensus 129 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 99999865 3566777777344455699999999999998 5676 4566677777877887 888888888877
Q ss_pred hhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 004024 535 RDYGVIPN------SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGA 584 (778)
Q Consensus 535 ~~~~~~p~------~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a 584 (778)
+...-.|+ ...|..+...|.+.|++++|.+.+++. ...|+ +..+..+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 65444454 267888999999999999999999887 44554 5555554433
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=5.2e-12 Score=135.56 Aligned_cols=241 Identities=10% Similarity=0.082 Sum_probs=165.1
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCC-hhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGY-SEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~-~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+++.+...|.+.|++++|+..|++..+ .+...|+.+...|...|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---------------
Confidence 3455555555555666666666555432 233455555556666664 666666666655432
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|++
T Consensus 163 ---------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 163 ---------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence 33455666666777777777777777777654 466778888888888888888888
Q ss_pred HHHHHHHCCCCCC-hhHHHHHHHHHhc-cCcHHHH-----HHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC--CHHHHH
Q 004024 494 LFESMKTVGIKPD-DITMVGILSACSH-TGLVEKG-----TEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG--RLDEAQ 563 (778)
Q Consensus 494 l~~~m~~~g~~pd-~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g--~~~eA~ 563 (778)
.|+++++ +.|+ ...|..+..++.. .|..++| ++.|..... +.| +...|..+..+|.+.| ++++|+
T Consensus 222 ~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 222 YVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 8888887 5664 4567777777777 5554666 466776654 345 4667888888888888 588888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HhcCCCCCchHHHHHHHhhhc
Q 004024 564 NLMKNMPFEPD-AATWGALLGACRLYG--------K-TELAEKAAEVI-FEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 564 ~~~~~m~~~p~-~~~~~~Ll~a~~~~g--------~-~~~a~~~~~~~-~~l~p~~~~~y~~L~~~y~~~ 622 (778)
++++++...|+ ..++..|...+...| + .+.|..+++++ .+++|.....|..++..+...
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 88887755565 567888888887764 3 58899999999 999999988888887766443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=1.2e-11 Score=123.59 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|++..+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3455677788889999999999999999865 36788999999999999999999999999884 45 456788888
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...|++++|.++|+.+.+.. ..+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988642 235778889999999999999999999887 3334 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988763
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=8.8e-12 Score=137.71 Aligned_cols=341 Identities=11% Similarity=-0.000 Sum_probs=204.4
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCCh---HHHHHHHHhCCCCCcchHHHHHHHHhccC-----
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPVK-DVFTWTAMVSGYVQNGKV---DEARMIFDAMPEKNTVSWNAMIAGYVQTK----- 323 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~t~~~ll~~~~~~~----- 323 (778)
+...+.+.|++++|.++|++..++ +..++..|...|...|+. ++|+..|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 455666777777777777765432 444555555666666666 67777777766555555556655444433
Q ss_pred ChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHHH---hhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 324 RMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARNL---FDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 324 ~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~---f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
+.++|...+.... ..+...+..|..+|...+..+.+.+. +..... .+...+..+...|...+.++++
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~-------- 160 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH-------- 160 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC--------
Confidence 5566666666665 33444566666666655443322221 111111 1222333333333333332222
Q ss_pred hcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhccC---CCh
Q 004024 399 RYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG---SVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 399 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~---~d~ 472 (778)
.+.+..++.... ..++..+..|..+|.+.| +.++|.+.|++..+ ++.
T Consensus 161 -----------------------~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 161 -----------------------LDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp -----------------------HHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred -----------------------HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 222223222222 233347778899999999 99999999998755 344
Q ss_pred hHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCChhHHHHHHHH-H--hccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 473 ISWNTMIAGYARH----GFGKDALMLFESMKTVGIKPDDITMVGILSA-C--SHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 473 ~~~~~li~~~~~~----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
..+..|...|... ++.++|++.|++.. .| +...+..+... + ...|+.++|.++|+...+. | +...
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A 285 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRA 285 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 4446677777544 68999999999987 33 33344444444 3 5689999999999998754 4 5667
Q ss_pred HHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 546 YTCMVDLLGRAG-----RLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 546 y~~lv~~l~r~g-----~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+..|..+|. .| ++++|.+.+++.- .-++..+..|...+.. ..|.++|...++++.+ +.++..+..|+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg 361 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIA 361 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHH
Confidence 777887776 55 9999999999987 5567777777766655 3399999999999876 45678899999
Q ss_pred HHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 617 NLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 617 ~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
.+|.. ..+.++|..+++...+.|.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99985 4688899999998888775
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=2.5e-11 Score=130.24 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=185.2
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|+.+...+.+.|++++|+..|++..... +.+..+++.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------------------------------------P~~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN------------------------------------AANYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC------------------------------------ccCHHHHHHHHHHH
Confidence 356677777778888888888888776532 34566778888899
Q ss_pred HhcCC-HHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 452 CKCGS-VEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 452 ~k~g~-~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
.+.|+ +++|+..|++... .+...|+.+...|...|++++|+..|+++++ +.|+ ...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHH
Confidence 99997 9999999999865 4778999999999999999999999999999 6775 56788899999999999999
Q ss_pred HHHHHHchhhcCCCC-ChHHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHHcC--ChHHHH
Q 004024 527 TEYFYSMNRDYGVIP-NSKHYTCMVDLLGR-AGRLDEA-----QNLMKNM-PFEPD-AATWGALLGACRLYG--KTELAE 595 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r-~g~~~eA-----~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g--~~~~a~ 595 (778)
+..|+.+.+. .| +...|+.+..+|.+ .|..++| ++.+++. .+.|+ ...|..+...+...| +.+.|.
T Consensus 220 l~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 9999999864 45 57788899999999 6775777 4666655 45664 779999999998888 689999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcC---------CcchHHHHHHHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASG---------RWGDVSKVRLKM 635 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g---------~~~~a~~~~~~m 635 (778)
..++++ +.+|+++..+..|+.+|...| ..++|.++++.+
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 999998 999999999999999999985 258899998887
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=2.4e-10 Score=116.84 Aligned_cols=223 Identities=13% Similarity=-0.025 Sum_probs=158.1
Q ss_pred CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 370 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
+..++..+...|.+.|++++|+..|++..+.+ +...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 33455666666777777777777777665521 2334445666
Q ss_pred HHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc-
Q 004024 450 MYCK----CGSVEEAYHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTVGIKPDDITMVGILSACSH- 519 (778)
Q Consensus 450 ~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~- 519 (778)
+|.. .|++++|.+.|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 6666 7777777777776644 356677777777777 778888888887777754 55666666677777
Q ss_pred ---cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 004024 520 ---TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----Y 588 (778)
Q Consensus 520 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~ 588 (778)
.|+.++|.++|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..++..+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77888888888777653 2 45566667777776 78888888888766212346677777777777 8
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCC
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g 639 (778)
++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.++...+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888888766 5677888888888 888888888888777655
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=134.42 Aligned_cols=255 Identities=13% Similarity=0.046 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC-------C--CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcc-cCcccccc
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ-------H--DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGER-LNRSPFTS 411 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ 411 (778)
++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+..|.+....... ++.
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----
Confidence 344444555555555555555444321 0 1234566666777777777777777766542110 000
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhccC--
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS--------------------VEEAYHAFEEIVD-- 469 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~~-- 469 (778)
.....++..+...|...|+ +++|.+.|++...
T Consensus 124 --------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 124 --------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0012244455555666666 6666666655422
Q ss_pred ---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhc
Q 004024 470 ---K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDY 537 (778)
Q Consensus 470 ---~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 537 (778)
. ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 134577777778888888888888877765210 112 1256677777888888888888887765432
Q ss_pred CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 538 GVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 538 ~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
.-.++ ...+..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11111 556778888899999999999888765 11122 5578888899999999999999999999874
Q ss_pred CC------CCchHHHHHHHhhhcCCcch
Q 004024 606 PE------NAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 606 p~------~~~~y~~L~~~y~~~g~~~~ 627 (778)
+. ...++..|+.+|...|+...
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 33 34578889999998887754
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1e-11 Score=138.04 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV-EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555544332 245778888899999999999 999999998854 3578999999999999999999999999
Q ss_pred HHHCCCCCChhHHHHHHHHHhcc---------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhc--------CCH
Q 004024 498 MKTVGIKPDDITMVGILSACSHT---------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRA--------GRL 559 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------g~~ 559 (778)
..+ +.|+...+..+...+... |++++|.+.|+...+. .| +...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 678888888888999999 9999999999998764 34 577888999999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNM-PFEP----DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p----~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
++|++.+++. ...| ++..|..+..++...|+++.|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999887 3456 678999999999999999999999999999999999999999999999999999987543
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.30 E-value=4.4e-11 Score=117.94 Aligned_cols=191 Identities=12% Similarity=-0.021 Sum_probs=113.3
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++...+..+...|.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+.. |+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------
Confidence 44556666677777777777777777765432 34556666677777777777777777766532 32
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhccC--C-ChhHHHHHHH
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC-----------GSVEEAYHAFEEIVD--K-DVISWNTMIA 480 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-----------g~~~~A~~~f~~m~~--~-d~~~~~~li~ 480 (778)
+...+..+...|.+. |++++|...|++..+ | +...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 333444444455555 777777777776643 2 4556777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~ 559 (778)
.|...|++++|++.|++..+.. .+...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 7777777777777777777654 55566666666777777777777777766543 33 355566666677777777
Q ss_pred HHHHHHHHhC
Q 004024 560 DEAQNLMKNM 569 (778)
Q Consensus 560 ~eA~~~~~~m 569 (778)
++|.+.+++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.30 E-value=2e-10 Score=117.40 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=178.8
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCC-CeeehhhHHHHHHh----cCChhHHHHHHHHHhhcCcccCcccccch
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQH-DCISWAAIIAGYAQ----SGYSEDSLRLFIEMKRYGERLNRSPFTSV 412 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 412 (778)
.++.++..+...|.+.|++++|...|++..++ +..+|..+...|.. .+++++|+..|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------
Confidence 35667888999999999999999999987654 44567777778888 888888888888776532
Q ss_pred HHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH---
Q 004024 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEAYHAFEEIVD-KDVISWNTMIAGYAR--- 484 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~--- 484 (778)
+...+..|..+|.. .|++++|.+.|++..+ .+..++..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCC
Confidence 34455566777777 8888888888887754 467778888888888
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh----
Q 004024 485 -HGFGKDALMLFESMKTVGIKPDDITMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR---- 555 (778)
Q Consensus 485 -~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r---- 555 (778)
.|+.++|++.|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+..+|.+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 889999999999888865 45566666677776 88999999999887754 245677788888888
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCC
Q 004024 556 AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 556 ~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.|++++|.+.+++.--..+...+..|...+.. .++.++|...++++.++.|+++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999876212236778888888888 8999999999999999998763
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.29 E-value=2.7e-11 Score=123.60 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=180.1
Q ss_pred HhcccccHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh
Q 004024 415 TCANLASLELGKQLHGQLVKVGF---EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~ 488 (778)
.....+++++|...+..+++... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 34566899999999999988642 23577888899999999999999999998854 4688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 489 KDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
++|++.|++..+ ..| +...+..+...+...|++++|.++|+.+.+. .|+...+......+.+.|++++|...++
T Consensus 94 ~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999998 456 4668888899999999999999999998764 4655555556666678899999999996
Q ss_pred hC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 568 NM-P-FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 568 ~m-~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+. . .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 65 2 234444554 677777788889999999999987764 3678999999999999999999999988764
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=1.4e-11 Score=134.00 Aligned_cols=264 Identities=12% Similarity=0.008 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--CC-e----eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ--HD-C----ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~----~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+...|...|++++|...|++..+ ++ . ..|..+...|...|++++|+..|++.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 34455666677777777777766543 21 1 245566666666677777777666654321
Q ss_pred hcccccHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhHHHHHHHHHHHc
Q 004024 416 CANLASLELGKQLHGQLVKVG-FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----K----DVISWNTMIAGYARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~----d~~~~~~li~~~~~~ 485 (778)
.+.+ .+....++..+...|...|++++|...|++..+ . ...+|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0001 012344566777788888888888888877643 1 234677788888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-
Q 004024 486 GF-----------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN- 542 (778)
Q Consensus 486 g~-----------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 542 (778)
|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|.++|+...+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888888776542 11121 236667777888899999999988887653221122
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 004024 543 ---SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN--- 608 (778)
Q Consensus 543 ---~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~--- 608 (778)
...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|+++.|...+++++++.+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 236778888999999999999988765 11111 4578888899999999999999999999875543
Q ss_pred ---CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 ---AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ---~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..++.+|...|++++|.+.++...+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999887765
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=3.4e-11 Score=130.42 Aligned_cols=264 Identities=14% Similarity=0.066 Sum_probs=187.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--C-C----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ--H-D----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 77 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 77 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------
Confidence 34445556666666666666655432 1 1 1244555555556666666666655543310
Q ss_pred hcccccHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHc
Q 004024 416 CANLASLELGKQLHGQLVKVGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~ 485 (778)
.+.+.. ....++..+...|...|++++|...|++..+ ++ ..+|..+...|...
T Consensus 78 -----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 78 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 011111 1245667788899999999999999987754 23 44788899999999
Q ss_pred CC--------------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 486 GF--------------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 486 g~--------------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
|+ +++|++.+++.... +-.|. ..++..+...+...|++++|.++|+...+...-.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999999887542 11222 2367778888999999999999999876542222
Q ss_pred CC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 541 PN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 541 p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
++ ...|..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.|..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 347888999999999999999998776 11122 4578888999999999999999999999876544
Q ss_pred ------CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 ------AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ------~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+..+..++.+|...|++++|.+.++...+
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999887654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=4.3e-11 Score=125.50 Aligned_cols=263 Identities=14% Similarity=0.064 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCCC--C-C----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 344 NTMITGYAQSGEITHARNLFDRMPQ--H-D----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 344 ~~Li~~y~k~g~~~~A~~~f~~m~~--~-d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
......+.+.|++++|...|+++.+ + + ...|..+...|...|++++|+..|++.....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 3445566666777777766666532 1 1 1345556666666666666666666554321
Q ss_pred cccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcC
Q 004024 417 ANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHG 486 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g 486 (778)
.+.+. +....++..+...|...|++++|...|++..+ ++ ..+|..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 01111 11244566778888888999888888887643 22 336777888888888
Q ss_pred C--------------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 487 F--------------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 487 ~--------------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
+ +++|++.+++.... +-.|. ..++..+...+...|++++|.++++...+...-.+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888876542 11121 23566777788889999999999888764322112
Q ss_pred C----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-
Q 004024 542 N----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN- 608 (778)
Q Consensus 542 ~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~- 608 (778)
+ ...+..+...+.+.|++++|.+.+++. +-.++ ..++..+...+...|+++.|...+++++++.|..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 2 346788889999999999999988765 11122 4577888889999999999999999999876543
Q ss_pred -----CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 -----AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 -----~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..++.+|...|++++|.+.++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33788999999999999999999888765
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=1.3e-10 Score=111.03 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
...|..+...|...|++++|++.|++..+ +.|+. .++..+..++...|++++|...+...... ...+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34555555555566666666666665555 34432 34555555556666666666666555432 111344455556
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
..+...+++++|.+.+++. ...| +..+|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666777777777766655 2334 3567777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.++...+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=1.4e-10 Score=121.56 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC---------CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccch
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ---------HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSV 412 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 412 (778)
++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|+..|.+........+..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 119 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 119 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-----
Confidence 344455555555555555555554321 112456666777777788888887777765421110000
Q ss_pred HHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhccC---
Q 004024 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS--------------------VEEAYHAFEEIVD--- 469 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~~--- 469 (778)
.....++..+...|...|+ +++|.+.|++...
T Consensus 120 -------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 120 -------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0012233444555555555 5555555554422
Q ss_pred --C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 470 --K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 470 --~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
+ ...+|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.++++.......
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 123566667777777777777777777654210 011 12566666677777888888777776654211
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 539 VIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 539 ~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
-.++ ...+..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 456777888888899999998888765 11112 44778888999999999999999999998876
Q ss_pred C
Q 004024 607 E 607 (778)
Q Consensus 607 ~ 607 (778)
.
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 4
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=5.8e-11 Score=129.17 Aligned_cols=268 Identities=12% Similarity=0.023 Sum_probs=191.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHhhc---cccc----cHHHHHHHHHHhcCChhHHHHHhhhCCCC---------Ceee
Q 004024 310 VSWNAMIAGYVQTKRMDMARELFEAMT---CKNV----ASWNTMITGYAQSGEITHARNLFDRMPQH---------DCIS 373 (778)
Q Consensus 310 ~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~ 373 (778)
..+..+...+...|++++|...++.+. +.+. .++..+...|...|++++|...|++..+. ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 455667778899999999999999998 3333 47888999999999999999999876431 2356
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 374 WAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 374 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
|..+...|...|++++|+..|++........+ + .+....++..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~---------------~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG---------------D---------------RLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------C---------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh---------------c---------------hHHHHHHHHHHHHHHHH
Confidence 78888889999999999999988765310000 0 01123345556666777
Q ss_pred cCC-----------------HHHHHHHHHhccC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 004024 454 CGS-----------------VEEAYHAFEEIVD-----K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PD 506 (778)
Q Consensus 454 ~g~-----------------~~~A~~~f~~m~~-----~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd 506 (778)
.|+ +++|.+.|++..+ . ...+|..+...|...|++++|++.|++..+..-. ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 7777776665432 1 2346777778888888888888888877652100 11
Q ss_pred ----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 004024 507 ----DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP----NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD 574 (778)
Q Consensus 507 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~ 574 (778)
..++..+...+...|++++|.++|+.......-.. ....+..+..+|.+.|++++|.+.+++. +-.++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12567777788888888888888887654321111 2466778889999999999999988776 11112
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 575 ----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 575 ----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
..+|..+...+...|+.+.|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 347788889999999999999999999988654
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=1.3e-10 Score=134.74 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMV 550 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 550 (778)
.+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++|.+.|++..+. .| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4555556666666666666666666655 4554 335555556666666666666666655532 34 356677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.|+ ..+|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7778888888888777765 44564 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.20 E-value=3e-10 Score=108.44 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=143.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll 514 (778)
.++.+|..|...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 3567889999999999999999999998854 4678899999999999999999999999988 4554 45666777
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...++.+++.+.+....+.. +-+...+..+..+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 78899999999999999887542 225677888999999999999999999887 4455 4779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 004024 593 LAEKAAEVIFEMEPENA 609 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~ 609 (778)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999863
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=3.5e-09 Score=110.38 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVI-SWNTMIAGYARHGFGKDALMLFESM 498 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~Al~l~~~m 498 (778)
++|..+++..++.-.+.+..++..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666632244666888889999999999999999998865 3 343 7999999999999999999999999
Q ss_pred HHCCCCCC-hhHHHHHHHHHh-ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 004024 499 KTVGIKPD-DITMVGILSACS-HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFE 572 (778)
Q Consensus 499 ~~~g~~pd-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~ 572 (778)
.+. .|+ ...|........ ..|+.++|..+|+...+..+ -+...|..+++.+.+.|++++|..++++. ++.
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 874 343 334443333322 36999999999998876532 25677888899999999999999998876 235
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 573 P--DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 573 p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
| ....|..++.....+|+.+.|..+++++++..|+++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 5 3568999998889999999999999999999998653
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=8.1e-09 Score=118.18 Aligned_cols=225 Identities=8% Similarity=-0.009 Sum_probs=162.7
Q ss_pred HHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 389 DSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGK-QLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 389 ~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
.+..+|++....- .-+...|.....-+...|+.+.|. .+++..++. .+.+..++-.++..+-+.|+++.|+++|+++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666665532 223334444444455667777886 899888764 4667778888999999999999999999987
Q ss_pred cC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhc-c
Q 004024 468 VD-------------KD------------VISWNTMIAGYARHGFGKDALMLFESMKTV-GIKPDDITMVGILSACSH-T 520 (778)
Q Consensus 468 ~~-------------~d------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~-~ 520 (778)
.. |+ ...|...+....+.|..+.|..+|.+..+. +. +....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhC
Confidence 54 21 236888888888899999999999999885 21 122334322222223 3
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP----DAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
++.+.|..+|+...+.++- +...+...++.+...|+.+.|..+|++. ...| ...+|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5599999999999886543 4455678889888999999999999986 2233 2468999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHh
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
.+.+++.+..|+++ ....+++=|
T Consensus 562 ~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999999884 334444444
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=1.6e-09 Score=107.36 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=104.6
Q ss_pred ccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHc
Q 004024 409 FTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARH 485 (778)
Q Consensus 409 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~ 485 (778)
+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++..+ | +...|..+...|...
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 3334444555555666666665555544324444444455555555666666555555533 2 234455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC---hHHHHHHHHHHh
Q 004024 486 GFGKDALMLFESMKTVGIKPDDI--------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN---SKHYTCMVDLLG 554 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~ 554 (778)
|++++|++.|++..+ ..|+.. .|..+...+...|++++|.+.|+...+ +.|+ ...|..+..+|.
T Consensus 90 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 90 KNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHH
Confidence 666666666655555 334322 234444445555555555555555542 2343 334444444444
Q ss_pred hcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 555 RAGRL--DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 555 r~g~~--~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.....|+.+..
T Consensus 165 ~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 NNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 43332 2221111 11122222221 223344599999999999999999888888877654
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=4.9e-09 Score=119.96 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=91.4
Q ss_pred hhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCC---hhHHHHHHhh
Q 004024 78 DSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKS---LSAARNLFEM 148 (778)
Q Consensus 78 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~f~~ 148 (778)
.+.+..|+..+. .|..+|..+|..+.+.+.++.++.+|+++. ......|..-+..-.+.|. .+.+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 333444444332 467789999999999999999999999886 3455678888888888888 9999999998
Q ss_pred CC--C---CCcchHHHHHHHHHcCCCh--------HHHHHHHHhcc------cCC-cchHHHHHHHHH---------hcC
Q 004024 149 MP--K---RDVVSWNTMLSGYAQNGYA--------DAARRIFDRML------EKN-EISWNGLLAAYV---------QNG 199 (778)
Q Consensus 149 m~--~---~d~~~~~~li~~~~~~g~~--------~~A~~~~~~m~------~~d-~~t~~~ll~~~~---------~~g 199 (778)
.. . |++..|..-+.-..+.++. +...++|+..+ .++ ...|...+.-.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 65 2 7777888777655554443 23446777644 222 345666665433 234
Q ss_pred CHHHHHHHHHhcccC
Q 004024 200 RIEEACMLFESKANW 214 (778)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (778)
+++.++.+|.+++..
T Consensus 209 ~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 467778888887753
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=2.1e-09 Score=112.06 Aligned_cols=212 Identities=10% Similarity=-0.005 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-ChhHHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYC-------KCGSV-------EEAYHAFEEIVD---K-DVISWNTMIAGYAR 484 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~m~~---~-d~~~~~~li~~~~~ 484 (778)
+.+..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555554432 445666666666664 45885 999999998755 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh-hcCCHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPDDI--TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG-RAGRLDE 561 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~-r~g~~~e 561 (778)
.|+.++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+...+.. .++...|........ ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 677643 78888899999999999999999987531 234455544444422 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM---EPE-NAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l---~p~-~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
|.+++++. ...| ++..|..++..+...|+.+.|..+++++++. .|+ ....+..+++.+...|++++|..+++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 2234 5789999999999999999999999999995 554 5667888999999999999999998888
Q ss_pred HhCC
Q 004024 636 RDRG 639 (778)
Q Consensus 636 ~~~g 639 (778)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7644
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=8.7e-11 Score=122.01 Aligned_cols=49 Identities=10% Similarity=-0.049 Sum_probs=21.2
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
..+.+..+...++++.+..|..+..+..|+.+|...|++++|.+.++..
T Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp --CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444555555555555555555555666666666666665555544
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=7.7e-10 Score=119.30 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-h
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPD-D 507 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd-~ 507 (778)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3455566666677777777766665532 11 135666666677777777777777666551 22132 2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPNSKHYTCMVDLLGRAGR---LDEAQNLMKNMPFEPD-AATWGA 580 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~-~~~~~~ 580 (778)
.++..+...+...|+.++|.++++...+.. +-......+..+..++...|+ +++|..++++.+..|+ ..++..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345556666666666666666666554321 111112224455556666666 6666666666543333 224445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
|...+...|+.+.|...+++++++
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555555566666666666655554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=8.3e-10 Score=122.63 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=156.6
Q ss_pred CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG-KDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYF 530 (778)
Q Consensus 456 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 530 (778)
.+++|.+.+++... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777776543 4678899999999999999 999999999998 5676 568889999999999999999999
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRA---------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY--------GKT 591 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~--------g~~ 591 (778)
+... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9987 4568888899999999999 9999999999887 4455 477999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 592 ELAEKAAEVIFEMEP---ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p---~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.|...++++++++| +++..|..++.+|...|++++|.+.++...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999887663
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=9.6e-11 Score=121.68 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=168.2
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhc-------CcccCcccccchHHHhcccccHHHHHHHHHHHHHc------C-
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRY-------GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV------G- 436 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g- 436 (778)
..+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 357888999999999999999999998873 22223345666777788899999999999888764 2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----------KDVISWNTMIAGYARHGFGKDALMLFESMKTV---- 501 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~---- 501 (778)
.+....++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 233466788899999999999999999987743 13456888888999999999999999998774
Q ss_pred --CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCCCC-------hHHHHHHHHHHhhcCCHHHHHHH
Q 004024 502 --GIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDY------GVIPN-------SKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 502 --g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
+..|+. .++..+...+...|++++|.++|+.+.+.. ...|. ...+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 224433 367778888999999999999999887531 11111 22233333444455566666666
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 566 MKNMP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 566 ~~~m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
++... ..|+ ..+|..+..++...|+++.|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66653 3343 568999999999999999999999999999875
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=1.7e-09 Score=102.46 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACS 518 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 518 (778)
..+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+. .|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 74 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD------------ 74 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------------
Confidence 4455566667777777777777776654 24556666666677777777777777766652 332
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 519 HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 519 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
+...+..+...+...|++++|.+.++++ .. +.+..+|..+...+...|+.+.|..
T Consensus 75 -----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 75 -----------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 2233344444444455555555544443 11 2234556666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666677777777777777666665543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=1.4e-09 Score=107.73 Aligned_cols=189 Identities=9% Similarity=-0.071 Sum_probs=112.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGIL 514 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll 514 (778)
|+..+..+...|.+.|++++|...|++..+ ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666677777777777777776533 4555666666777777777777777777776 45553 3556666
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNS-----KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AATWGALLGAC 585 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~ 585 (778)
..+...|++++|.+.|+...+...-.|.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66677777777777777665432211111 34555666666666666666666655 34554 23455555544
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.. .+...++++..+.+.++..|.. ......|.+++|...++...+
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 32 3444455556665555333322 233344556888888777665
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=4.6e-09 Score=99.43 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=122.9
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYAR 484 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~ 484 (778)
.+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455667788999999999998887653 45678889999999999999999999998754 467788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
.|++++|++.|+++.+. .| +...+..+...+...|++++|.++++.+.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------- 139 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--------------------------- 139 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---------------------------
Confidence 99999999999998873 33 3334444444444445555554444443321
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
.+.+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 12245677777788888888888888888888888877544
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=9.9e-10 Score=118.43 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD-----VISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPDD-- 507 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~-- 507 (778)
..++..+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+..- .+|.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45677788889999999999988887643 22 34788889999999999999999998876311 1221
Q ss_pred --hHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-
Q 004024 508 --ITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF--EPD- 574 (778)
Q Consensus 508 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~- 574 (778)
.++..+...+...|++++|.++|+...+.. +..| ....+..+..+|.+.|++++|.+.+++. +. .|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 367888889999999999999999876521 2313 4667888999999999999999998876 11 222
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..|...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+.++...+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2235666677777788 66666666655 33344556788999999999999999999887754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=3.3e-08 Score=105.87 Aligned_cols=194 Identities=16% Similarity=0.091 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK--P--DDI 508 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~--p--d~~ 508 (778)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++.....-. | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566778888888888888876633 1 1234566777788888888888888887763221 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT-----CMVDLLGRAGRLDEAQNLMKNMP-FEPD-----AAT 577 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~ 577 (778)
++..+...+...|++++|..+++.......-......+. ..+..+.+.|++++|...+++.- ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666778888999999888887764322111111121 23345778899999999998872 2221 225
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENA------GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~------~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|+.++|.+.++...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888888999999999999887644321 3677889999999999999988777654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=3.3e-09 Score=122.84 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=145.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~l 513 (778)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34567888999999999999999999998855 4678999999999999999999999999998 6786 4588899
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGK 590 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~ 590 (778)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999998753 55 4788999999999999999999999887 56675 6799999999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 004024 591 TELAEKAAEVIFEMEPE 607 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~ 607 (778)
.+.|++.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999987654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=3.9e-08 Score=105.64 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhH
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPDDIT 509 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd~~t 509 (778)
+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++..+. +......+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 344455555666666666655554432 11 224455555555566666666665555441 11111234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGV---IPNSKHYTCMVDLLGRAGR---LDEAQNLMKNMPFEPD-AATWGALL 582 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~-~~~~~~Ll 582 (778)
+..+...+...|+.++|..+++...+...- ......+..+..++...|+ +++|+..+++.+..|+ ...+..|.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 444455555555555555555554432211 1112233444444444555 5555555555432222 12333444
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~ 603 (778)
..+...|+.+.|...++++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 444444555555555444443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=4.4e-09 Score=107.12 Aligned_cols=198 Identities=17% Similarity=0.172 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----------KDVISWNTMIAGYARHGFGKDALMLFESMKTV------G 502 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g 502 (778)
...++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 455667777788888888888888876642 12446777888888888888888888887763 1
Q ss_pred CCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 004024 503 IKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDY-----GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM------ 569 (778)
Q Consensus 503 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m------ 569 (778)
-.|+ ..++..+...+...|++++|.++|+.+.+.. +-.| ....+..+..+|.+.|++++|.+.+++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 3466777778888888888888888776531 1122 3566778888888889988888887765
Q ss_pred ----CCCCC-HHHHHHHHHHHHHcCChHH------HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 570 ----PFEPD-AATWGALLGACRLYGKTEL------AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 570 ----~~~p~-~~~~~~Ll~a~~~~g~~~~------a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...|. ...|..+.......+.... +...++.+....|..+..+..|+.+|...|++++|.+.++...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233 3344444444433333222 22222222223355566788999999999999999999887654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.7e-08 Score=104.31 Aligned_cols=183 Identities=12% Similarity=0.010 Sum_probs=122.2
Q ss_pred HHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------hhHHHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-------DITMVG 512 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-------~~t~~~ 512 (778)
..|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 346666777777777665532 11 34677777788888888888888877765 2221 235677
Q ss_pred HHHHHhcc-CcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHH
Q 004024 513 ILSACSHT-GLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---A-----ATW 578 (778)
Q Consensus 513 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~-----~~~ 578 (778)
+...+... |++++|..+|+...+.+.-..+ ...|..+..+|.+.|++++|.+.+++. ...|+ . ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 77788885 8899888888887653211111 356788899999999999999999876 22232 1 156
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHhh--hcCCcchHHHHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPENAGM-----YVLLSNLYA--ASGRWGDVSKVRL 633 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-----y~~L~~~y~--~~g~~~~a~~~~~ 633 (778)
..+..++...|+++.|...+++.++++|+.... +..|...|. ..+++++|.+.++
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 777778888999999999999999999986553 334555554 4566777776664
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=4.1e-09 Score=96.96 Aligned_cols=140 Identities=14% Similarity=0.014 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVE 524 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 524 (778)
..+|...|++++|...|+..... +...|..+...|.+.|++++|++.|++..+ +.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~------------------ 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQER------------------ 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC------------------
Confidence 34455556666666666665442 234455566666666666666666666665 4443
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH-HHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK-AAEVI 601 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~-~~~~~ 601 (778)
+...|..+..+|.+.|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|.+ .++++
T Consensus 64 -----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 64 -----------------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3445555666666666666666666655 34564 6788889999999999876555 56999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCC
Q 004024 602 FEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
++++|+++.+|.+.+.++...|+
T Consensus 127 l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 127 AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999988885
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=2.1e-08 Score=107.72 Aligned_cols=196 Identities=11% Similarity=0.013 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC---
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD-----VISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD--- 506 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd--- 506 (778)
..++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+..- .++
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44667788889999999999888887643 22 34688899999999999999999998876210 112
Q ss_pred -hhHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-H
Q 004024 507 -DITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF--EPD-A 575 (778)
Q Consensus 507 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~-~ 575 (778)
..++..+...+...|+.++|.++|+...... +.......+..+..+|.+.|++++|.+.+++. +. .|. .
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2367778889999999999999999887521 22223667888999999999999999998876 21 233 2
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 576 ATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+..+...+...++ .+.|...+++. ...|.....+..|+.+|...|++++|.+.++...+
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555556666677 66666666551 22344456778999999999999999999887653
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=5.8e-08 Score=98.25 Aligned_cols=204 Identities=12% Similarity=0.009 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----h
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-D---VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD----I 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~ 508 (778)
.+...+-.+...|.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+ ..|+. .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHH
Confidence 3455555666777778888888888887754 3 2 45667777777888888888888888777 33432 2
Q ss_pred HHHHHHHHHhc--------cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 509 TMVGILSACSH--------TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 509 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
.+..+..++.. .|++++|...|+...+.+.-.|.. ...+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--DDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--HHHHHHHHHHHHHH---------------HHHHHH
Confidence 34445555555 777777777777766543222211 11111110000001 112466
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhc----------CCcchHHHHHHHHHhCCCccCCcee
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAAS----------GRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~----------g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
+...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++...+.. |
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p--- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P--- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T---
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C---
Confidence 77888999999999999999999999854 4788999999877 89999999998877632 2
Q ss_pred EEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 648 WLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 648 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.+|...+....+.++...+++
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 366677778888888777765
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=1.4e-07 Score=101.01 Aligned_cols=192 Identities=8% Similarity=0.010 Sum_probs=127.7
Q ss_pred hcccccHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C------ChhHHHHHHH
Q 004024 416 CANLASLELGKQLHGQLVKV----GFE--A-GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K------DVISWNTMIA 480 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~----g~~--~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~------d~~~~~~li~ 480 (778)
+...|++++|...+....+. +.. | ....+..+...|...|++++|...+++... + ...+|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 44445555555554444332 221 2 234556677888899999999999887632 1 1346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hHHH-----HHHHHHhccCcHHHHHHHHHHchhhcCCCC--ChHHHHHHHHH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDD-ITMV-----GILSACSHTGLVEKGTEYFYSMNRDYGVIP--NSKHYTCMVDL 552 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~ 552 (778)
.+...|++++|...+++.....-.++. ..+. .....+...|+.++|..++........-.+ ....+..+..+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 889999999999999988763222221 1222 223346789999999999988764321111 12346677888
Q ss_pred HhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 553 LGRAGRLDEAQNLMKNM-------PFEPDAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-------~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+...|++++|.+.+++. +..++.. ++..+..++...|+.+.|...+++++++.+.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999988765 1112222 5666677888999999999999999887653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=2.7e-08 Score=102.74 Aligned_cols=166 Identities=8% Similarity=-0.064 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-----
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARH-GFGKDALMLFESMKTVGIKPD----- 506 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~pd----- 506 (778)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|++.|++..+ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4556677777777777777777776543 12 34677777788875 888888888887766 3332
Q ss_pred --hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 004024 507 --DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS-----KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAA-- 576 (778)
Q Consensus 507 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-- 576 (778)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2356677778888888888888888776532211221 24666777788888888888888776 4445421
Q ss_pred ----HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCC
Q 004024 577 ----TWGALLGACR--LYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 577 ----~~~~Ll~a~~--~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.+..|+.++. ..++++.|...++++.+++|.+.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 3444555554 23557777777777777777653
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=8.5e-08 Score=97.03 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=142.7
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAG---CFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD----VISWNTM 478 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~l 478 (778)
.+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ |+ ...|..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 44455566778999999999999998864 223 66778889999999999999999999865 31 3467778
Q ss_pred HHHHHH--------cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 479 IAGYAR--------HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 479 i~~~~~--------~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
..+|.. .|++++|+..|++..+ ..|+..... .+...+...... -...+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD-------------DATQKIRELRAK-----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH-------------HHHHHHHHHHHH-----HHHHHHHHH
Confidence 888888 9999999999999998 567643211 111111111111 122355678
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCc---hH
Q 004024 551 DLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLY----------GKTELAEKAAEVIFEMEPENAG---MY 612 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~----------g~~~~a~~~~~~~~~l~p~~~~---~y 612 (778)
..|.+.|++++|...+++. |-.|. ...|..+..++... |+++.|...++++++..|+++. ++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8899999999999988876 32232 34677777777755 8889999999999999999864 34
Q ss_pred HHHHHHhhhcCCcch
Q 004024 613 VLLSNLYAASGRWGD 627 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~ 627 (778)
..|..++...|+.++
T Consensus 236 ~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 236 ELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 455666555554443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=2e-07 Score=92.05 Aligned_cols=181 Identities=13% Similarity=-0.013 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----HHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD--KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI----TMV 511 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~----t~~ 511 (778)
..+..+...|.+.|++++|...|+++.+ |+ ...|..+..+|...|++++|++.|++..+ ..|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHH
Confidence 3444566678888999999999988764 32 24677788888899999999999999887 456542 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004024 512 GILSACSH------------------TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP 573 (778)
Q Consensus 512 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 573 (778)
.+..++.. .|+.++|...|+.+.+.+.-.|.. +.. +.+.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a--~~a----~~~l~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT--TDA----TKRLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH--HHH----HHHHHHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH--HHH----HHHHHHHHHHH----------
Confidence 33333332 345555555555554432221111 110 00000000000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
......+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+.++.+...+.+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445667889999999999999999999986 56889999999999999999999998886553
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=1.2e-07 Score=97.49 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 462 HAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 462 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
+.++.....+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+...+...|+.++|...++.+... .
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333333333445566666777778888888888888777 56644 46666777778888888888888777543 4
Q ss_pred CChHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHH
Q 004024 541 PNSKHYTCMV-DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN--AGMYVLL 615 (778)
Q Consensus 541 p~~~~y~~lv-~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~~y~~L 615 (778)
|+........ -.+.+.|+.++|.+.+++. ...| +...+..|..++...|+.+.|...++++++.+|++ ...+..|
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 5443333222 2356677777787777665 3345 47789999999999999999999999999999998 8899999
Q ss_pred HHHhhhcCCcchHHHHHHH
Q 004024 616 SNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~ 634 (778)
+.+|...|+.++|...+++
T Consensus 262 ~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 262 QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHH
Confidence 9999999999999877654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=2.7e-07 Score=81.66 Aligned_cols=127 Identities=19% Similarity=0.278 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
.|..+...|...|++++|+++|+++.+. .| +...+..+...+...|++++|..+|+.+... .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~----------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP----------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC-----------
Confidence 4555666666666667777666666653 22 2334444444455555555555555544332 11
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 67 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 67 --------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp --------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 123334444444444444455555555555555544444455555555555555555554
Q ss_pred HHHH
Q 004024 633 LKMR 636 (778)
Q Consensus 633 ~~m~ 636 (778)
+.+.
T Consensus 127 ~~~~ 130 (136)
T 2fo7_A 127 QKAL 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.4e-07 Score=109.55 Aligned_cols=167 Identities=10% Similarity=-0.050 Sum_probs=89.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 004024 452 CKCGSVEEAYHAFEEIV--------D---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSH 519 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~--------~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 519 (778)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 34455555555555544 1 2344555555555555666666666655555 34432 344455555555
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
.|++++|.+.|+...+. .| +...|..+..+|.+.|++++ ++.+++. ...|+ ...|..+..++...|+++.|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666655555432 23 34455555556666666665 5555544 23332 4456666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655554
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.72 E-value=1.2e-07 Score=96.20 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=104.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKTV------G 502 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g 502 (778)
...++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|++.|++..+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777888888888888888876632 1 2456777888888888888888888888763 1
Q ss_pred CCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCCCC-hHHHHHHHHHHhh------cCCHHHHHHHHHh
Q 004024 503 IKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDY------GVIPN-SKHYTCMVDLLGR------AGRLDEAQNLMKN 568 (778)
Q Consensus 503 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lv~~l~r------~g~~~eA~~~~~~ 568 (778)
-.|+ ..++..+...+...|++++|.++|+.+.+.. ...|. ...|..+...+.. ...+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 1333 3467777788888888888888888776531 11222 2223233333222 3345566666666
Q ss_pred CC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 569 MP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 569 m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.. ..|+ ..+|..|...+...|+++.|...+++++++
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 2233 457888999999999999999999998875
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=1.6e-07 Score=83.25 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.|..+...+.+.|++++|.++++++ ... .+..+|..+...+...|+.+.|...++++++..|.++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667788888889999999888876 223 35778888999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 004024 623 GRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~g 639 (778)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999998887654
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=4.4e-08 Score=89.96 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=96.6
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
.+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.|+ +.+|..+...+...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 3445677888888777654 33443 334556888899999999999999877 45664 779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH-HHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV-RLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~-~~~m~~ 637 (778)
.|+..++++++++|+++.++..|+.+|...|++++|.+. ++...+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 455443
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.67 E-value=1.1e-06 Score=89.46 Aligned_cols=174 Identities=9% Similarity=-0.012 Sum_probs=111.7
Q ss_pred HHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 460 AYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 460 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
|...|++..+ ++..++..+..++...|+.++|++++.+.+..|-.++. ..+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665542 44555556667777777777777777776654432233 3455666677777777777777777754
Q ss_pred hcCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Q 004024 536 DYGVIP-----NSKHYTCMVDL--LGRAG--RLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM- 604 (778)
Q Consensus 536 ~~~~~p-----~~~~y~~lv~~--l~r~g--~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l- 604 (778)
. .| +..+...|..+ ....| +.++|..+|+++ ...|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 44 23333444433 22223 788888888877 22344223333444677778888888888877776
Q ss_pred ---------CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 605 ---------EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 605 ---------~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+|+++.++..++.++...|+ +|.+++..+++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47787777777777777786 788888888764
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=5.1e-07 Score=93.83 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=151.1
Q ss_pred cCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
.|++++|.+++++..+.. +. .+ +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888887766532 11 11 11136777777766554 4567788999998888
Q ss_pred HHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhHHHHHHHHHhccCcHHHHHHH
Q 004024 464 FEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGI---KPD--DITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 464 f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...+.. |++++|+++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887643 12 34788888899999999999999998765211 122 2466777778888 999999999
Q ss_pred HHHchhhcCCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 004024 530 FYSMNRDYGVI---P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKA 597 (778)
Q Consensus 530 ~~~m~~~~~~~---p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~ 597 (778)
|+.....+.-. + ....+..+..+|.+.|++++|++.+++. +-.++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99876532111 1 1467888899999999999999998876 11122 22566666777778999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHhhhcCCcchHHH
Q 004024 598 AEVIFEMEPENAGM-----YVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 598 ~~~~~~l~p~~~~~-----y~~L~~~y~~~g~~~~a~~ 630 (778)
+++.+ ++|..... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33445545 4566555544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=5e-07 Score=104.86 Aligned_cols=193 Identities=9% Similarity=0.008 Sum_probs=149.8
Q ss_pred cccccHHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcC
Q 004024 417 ANLASLELGKQLHGQLVK-------VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHG 486 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 486 (778)
...|+.++|.+.+..+++ ...+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 566777777777777761 12245667788888999999999999999998865 46788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQN 564 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~ 564 (778)
++++|++.|++..+ +.|+. ..+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 67754 578888889999999999 9999988753 44 56788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 565 LMKNM-PFEPD-AATWGALLGACRLYGK-----TELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 565 ~~~~m-~~~p~-~~~~~~Ll~a~~~~g~-----~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++..+..-
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~ 613 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIR 613 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 99998 56787 5578777777655554 3556666666666766665554433
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=2.7e-07 Score=87.11 Aligned_cols=154 Identities=10% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG 521 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 521 (778)
..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++... ..|+. .+..++..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~~~~----- 81 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDN-SYKSLIAK----- 81 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCH-HHHHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCCh-HHHHHHHH-----
Confidence 3445556666777777776666644 3455666666666666666666666666544 23322 11111100
Q ss_pred cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
+. +.+.+...+|.+.+++. ...| +...|..+..++...|+++.|...++
T Consensus 82 ----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 82 ----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp ----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 01111112234444433 2345 47788888899999999999999999
Q ss_pred HHHhcCCCC--CchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 600 VIFEMEPEN--AGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 600 ~~~~l~p~~--~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
++++++|+. +..+..|+.+|...|+.++|...++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999999875 558889999999999999998887654
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=2.1e-07 Score=85.34 Aligned_cols=101 Identities=8% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|.+.+++. ...| ++..|..|..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5566 4567778888999999999999999887 4456 47899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++.+|...|++++|.+.++...+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999887764
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=5.1e-07 Score=102.66 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=119.4
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888887754 3567788888888999999999999998887 5665 45777788888899999999999
Q ss_pred HHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 004024 530 FYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY---GKTELAEKAAEVIFE 603 (778)
Q Consensus 530 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~---g~~~~a~~~~~~~~~ 603 (778)
|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++... |+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888754 34 4678888999999999999999999876 3445 467888999999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 004024 604 MEPENAGMYVLLS 616 (778)
Q Consensus 604 l~p~~~~~y~~L~ 616 (778)
.+|++...+..|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=2e-06 Score=83.88 Aligned_cols=171 Identities=8% Similarity=-0.066 Sum_probs=122.8
Q ss_pred HHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----cHHHHHHHHHHch
Q 004024 460 AYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG----LVEKGTEYFYSMN 534 (778)
Q Consensus 460 A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 534 (778)
|.+.|++..+ .++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444432 456667777777777777777777777777654 34455555555555 5 6777777777765
Q ss_pred hhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNM-PFEPD---AATWGALLGACRL----YGKTELAEKAAEVIF 602 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~ 602 (778)
+. + +...+..|..+|.. .+++++|++.+++. ...|+ +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 2 45566667777766 77888898888877 33443 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHhhhc-C-----CcchHHHHHHHHHhCC
Q 004024 603 EMEPENAGMYVLLSNLYAAS-G-----RWGDVSKVRLKMRDRG 639 (778)
Q Consensus 603 ~l~p~~~~~y~~L~~~y~~~-g-----~~~~a~~~~~~m~~~g 639 (778)
++ |.++..+..|+.+|... | ++++|.+.++...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77778899999999764 3 8999999998887765
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=7.9e-07 Score=90.59 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=122.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----Chh
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-----DDI 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-----d~~ 508 (778)
++......+...|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchH
Confidence 34444457778888889999999999887443 445677778889999999999999999988 677 366
Q ss_pred HHHHHHHH--HhccC--cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----------CC
Q 004024 509 TMVGILSA--CSHTG--LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-F----------EP 573 (778)
Q Consensus 509 t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~----------~p 573 (778)
+...+..+ ....| ...+|..+|+++... .|+...-..+..++.+.|++++|++.++.+- . .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 66666666 33334 899999999998755 3442333344447889999999999987641 1 25
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 574 D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 574 ~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
+ +.+...++......|+ .|.+.++++.+..|+++...
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 4 5566666666666776 78999999999999996544
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=2.6e-07 Score=84.47 Aligned_cols=100 Identities=9% Similarity=0.097 Sum_probs=87.3
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|...+++. ...| ++..|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4556777888899999999999999876 3445 57899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887765
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=3.7e-07 Score=80.91 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
+.+.-....|.+.|++++|++.+++. ...| ++.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666677777777777776665 3344 356677777777777777777777777777777777777777777777
Q ss_pred cCCcchHHHHHHHHHh
Q 004024 622 SGRWGDVSKVRLKMRD 637 (778)
Q Consensus 622 ~g~~~~a~~~~~~m~~ 637 (778)
.|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777766554
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=9.6e-07 Score=85.89 Aligned_cols=155 Identities=8% Similarity=0.031 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC-h
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDK---DVISWNT----------------MIAGYARHGFGKDALMLFESMKTVGIKPD-D 507 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~----------------li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~ 507 (778)
...+.+.|++++|...|++..+. +...|.. +...|...|++++|+..|++..+ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34566778888888888877542 3345555 88889999999999999999988 6675 4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR--LDEAQNLMKNMPFEPDAA--TWGALL 582 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~~--~~~~Ll 582 (778)
..+..+...+...|++++|...|+...+. .| +...|..+..+|...|. .+++...++... .|++. .|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 57788888899999999999999988753 45 46778888888766654 455666666653 44443 455556
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.++...|+++.|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777899999999999999999975
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=5.5e-07 Score=102.43 Aligned_cols=150 Identities=16% Similarity=0.056 Sum_probs=114.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
.|+.++|++.|++..+ ..|+ ...+..+...+...|++++|.+.|+...+ +.| +...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999887 5675 56788888899999999999999999874 455 477889999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc---CCcchHHHHHHHHHh
Q 004024 563 QNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS---GRWGDVSKVRLKMRD 637 (778)
Q Consensus 563 ~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~---g~~~~a~~~~~~m~~ 637 (778)
.+.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|... |++++|.+.++...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 3445 4779999999999999999999999999999999999999999999999 888888888777654
Q ss_pred CC
Q 004024 638 RG 639 (778)
Q Consensus 638 ~g 639 (778)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=3.6e-06 Score=82.83 Aligned_cols=180 Identities=13% Similarity=0.015 Sum_probs=128.2
Q ss_pred chHHHhcccccHHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHHH
Q 004024 411 SVLSTCANLASLELGKQLHGQLVKVGFEA--GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV----ISWNTMIAGY 482 (778)
Q Consensus 411 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~ 482 (778)
.....+...|++++|...+..+++..-.. ....+..+...|.+.|++++|...|++..+ |+. ..|..+..+|
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 34456778899999999999998864221 235677789999999999999999999864 332 1455555555
Q ss_pred HH------------------cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChH
Q 004024 483 AR------------------HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544 (778)
Q Consensus 483 ~~------------------~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 544 (778)
.. .|+.++|+..|++..+ ..|+....... ......+... ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a-------------~~~l~~~~~~-----~~~ 148 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDA-------------TKRLVFLKDR-----LAK 148 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHH-------------HHHHHHHHHH-----HHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHH-------------HHHHHHHHHH-----HHH
Confidence 54 5789999999999998 56775422111 1111111100 011
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
..-.+...|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|...++++....|++..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999998876 22343 257888899999999999999999999999888754
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=7.9e-06 Score=83.95 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-ChhH
Q 004024 443 VGNALLVMYCKCG--SVEEAYHAFEEIVD---KDVISWNTMIAGY----ARH---GFGKDALMLFESMKTVGIKP-DDIT 509 (778)
Q Consensus 443 ~~~~Li~~y~k~g--~~~~A~~~f~~m~~---~d~~~~~~li~~~----~~~---g~~~~Al~l~~~m~~~g~~p-d~~t 509 (778)
+++.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+ ..| |...
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 3344444444445 66666666666543 3444555543333 333 566666666666666 344 3445
Q ss_pred HHHHHHHHhccCcHH--HHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHH
Q 004024 510 MVGILSACSHTGLVE--KGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR------LDEAQNLMKNM-PFEP-DAATW 578 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~~eA~~~~~~m-~~~p-~~~~~ 578 (778)
|..-.....+.|..+ +++++++.+.+. .| |-..|+.-..++.+.|+ ++++++.++++ ...| |...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 555555555556655 666666666543 22 33334444444444444 67777776655 2334 46677
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHhcC---CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 579 GALLGACRLYGK-TELAEKAAEVIFEME---PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 579 ~~Ll~a~~~~g~-~~~a~~~~~~~~~l~---p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.+...+...|. .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777777665 334555666666665 66777777777777777777777777777664
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=1.4e-06 Score=82.10 Aligned_cols=155 Identities=12% Similarity=0.007 Sum_probs=94.4
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHH-HHHcC
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAG-YARHG 486 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~-~~~~g 486 (778)
......+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 344556778999999999999887653 55678888999999999999999999999865 433333222111 12222
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
...+|+..|++..+ ..|+. ...+..+..+|.+.|++++|.+.+
T Consensus 89 ~~~~a~~~~~~al~--~~P~~-----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 89 AESPELKRLEQELA--ANPDN-----------------------------------FELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TSCHHHHHHHHHHH--HSTTC-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHH--hCCCC-----------------------------------HHHHHHHHHHHHHcccHHHHHHHH
Confidence 33345666666665 44532 333444444444555555555544
Q ss_pred HhC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 567 KNM-PFEPD---AATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 567 ~~m-~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
+++ ...|+ ...|..|...+...|+.+.|...+++.+
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 443 22332 3355556666666666666666665554
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.47 E-value=6e-07 Score=93.30 Aligned_cols=197 Identities=9% Similarity=-0.054 Sum_probs=149.3
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
..|++++|.+++....+..-. . .+...|++++|...|.+. ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888899888887664211 1 122158899998888763 5678899999999999998
Q ss_pred HHHCCC---CC-C-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 498 MKTVGI---KP-D-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGV--IP--NSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 498 m~~~g~---~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
..+... .| . ..+|..+...+...|++++|..+|+.....+.- .| ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 866211 11 1 236888888999999999999999987654211 12 24678888999988 999999999887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHhhhcCCcchHHHHHHH
Q 004024 569 M----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG------MYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 569 m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
. +-..+ ..+|..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|.+.++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11111 457888899999999999999999999998776542 667788889999999999999887
Q ss_pred HH
Q 004024 635 MR 636 (778)
Q Consensus 635 m~ 636 (778)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.7e-06 Score=78.26 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3444 3455666778888999999999998876 3445 57789999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.+.++...+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.43 E-value=2.1e-06 Score=88.10 Aligned_cols=161 Identities=9% Similarity=-0.035 Sum_probs=127.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-HH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV-GI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~-~l 513 (778)
+.+......+...+.+.|++++|...|++... | +...+..+...|.+.|++++|+..+++... ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 55666677788888999999999999998754 3 667888899999999999999999998876 467654322 22
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AATWGALLGACRLY 588 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~~ 588 (778)
...+...|..++|...++..... .| +...+..+..+|.+.|++++|++.++++ ...|+ ...|..|+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23466777788888888887653 34 5778888999999999999999998877 33443 66899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFE 603 (778)
Q Consensus 589 g~~~~a~~~~~~~~~ 603 (778)
|+.+.|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=1.2e-06 Score=77.62 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACR 586 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~ 586 (778)
+......+.+.|++++|.+.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444455555555555555554432 22 3555666667777777777777776665 33454 678999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
..|+++.|...++++++++|+++.++..|++++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999998888887654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=3.3e-06 Score=81.96 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=87.7
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK 590 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~ 590 (778)
+...+...|++++|.+.|... +.|+...|..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 334455566666666666554 2445666666777777777777777776655 2233 46678888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCC----------------chHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFEMEPENA----------------GMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~----------------~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++.|...+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888777 78888889999999999998888877664
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=4.7e-06 Score=85.74 Aligned_cols=164 Identities=7% Similarity=-0.106 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCC--h
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-----ITMVGILSACSHTGLVEKGTEYFYSMNRDYG--VIPN--S 543 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~ 543 (778)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.++|........ ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999988887774322111 1233344556778899999998887764321 1121 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------C
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE------N 608 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~------~ 608 (778)
..|+.+...|...|++++|.+.+++. ...|+ ..+|..+...|...|+++.|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888899999999999999888765 11222 258888999999999999999999999987543 1
Q ss_pred CchHHHHHHHhhhcCCcchH-HHHHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDV-SKVRLKMR 636 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a-~~~~~~m~ 636 (778)
+..|..++.+|...|++++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77565543
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=6.7e-06 Score=79.74 Aligned_cols=144 Identities=10% Similarity=-0.090 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGL 522 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 522 (778)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344666788889999999999988888888888888889999999999999988887 3453 4456666667777777
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD-AATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
+++|.+.|+...+...-.+... +...| +...|+ ..+|..+..++...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776654311111000 00000 012333 357778888888888888899999999
Q ss_pred HhcCCCC
Q 004024 602 FEMEPEN 608 (778)
Q Consensus 602 ~~l~p~~ 608 (778)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888876
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.40 E-value=4e-06 Score=81.46 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=118.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
...+.+.|++++|+..|++..... |+........ ... ........+.+.+...|.+.|++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-NVD-----------------KNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-HSC-----------------TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-hhc-----------------chhhhhHHHHHHHHHHHHHCCCH
Confidence 345667788888888888877642 3322110000 000 00011223344588889999999
Q ss_pred HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc--HHHHHHHHH
Q 004024 458 EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGL--VEKGTEYFY 531 (778)
Q Consensus 458 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~--~~~a~~~~~ 531 (778)
++|...|++..+ .++..|..+...|...|++++|++.|++..+ +.|+. .++..+..++...|. .+.+...+.
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999998854 4678899999999999999999999999998 67864 467777667655554 334455554
Q ss_pred HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004024 532 SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLG 583 (778)
Q Consensus 532 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~ 583 (778)
... ...|....+..+...+...|++++|...+++. ...|+......|..
T Consensus 149 ~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 149 KLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 432 22222223334555667789999999999886 67888766655543
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=2.1e-05 Score=80.82 Aligned_cols=159 Identities=8% Similarity=-0.094 Sum_probs=116.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----hHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVG-IKPDDI----TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----SKHYTC 548 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 548 (778)
.+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667788889999999988887632 122211 2224555667778889999988888763222223 346888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-------PFE-PD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN------AGMYV 613 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-------~~~-p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~y~ 613 (778)
+...|.+.|++++|++.++++ +.. |. ..+|..+...|...|+++.|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999988887765 111 22 3478889999999999999999999999876443 56789
Q ss_pred HHHHHhhhcCC-cchHHHHHHHHH
Q 004024 614 LLSNLYAASGR-WGDVSKVRLKMR 636 (778)
Q Consensus 614 ~L~~~y~~~g~-~~~a~~~~~~m~ 636 (778)
.++.+|...|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999996 599998877654
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=3.4e-05 Score=85.40 Aligned_cols=361 Identities=9% Similarity=0.016 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCC-HHHHHHHHhhCC---
Q 004024 201 IEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNY-LAEAQRLFEEAP--- 274 (778)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~-~~~A~~~f~~m~--- 274 (778)
++.|+.+|++++.. +- .|.++.++.+|++.. .|++..|...+..-.+.+. .+....+|+...
T Consensus 11 i~~aR~vyer~l~~-----------~P-~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 11 LSSPSAIMEHARRL-----------YM-SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp -CCHHHHHHHHHHH-----------HH-TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH-----------CC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 66666666665431 11 177888888887766 4677777777766655542 234455555432
Q ss_pred ---CCCeehHHHHHHHHH----hcCChHHHHHHHHhCCCCCcchHHHHHHHHhc---cCChHHHHHHHHhhccccccHHH
Q 004024 275 ---VKDVFTWTAMVSGYV----QNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ---TKRMDMARELFEAMTCKNVASWN 344 (778)
Q Consensus 275 ---~~d~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~---~~~~~~a~~i~~~~~~~~~~~~~ 344 (778)
..+...|...+..+. .+|+.+.+..+|++...........+-..|.. ..+...+..+....
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--------- 149 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--------- 149 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---------
Confidence 124456666665543 23556667777776654211111111111111 11111111111110
Q ss_pred HHHHHHHhcCChhHHHHHhhhCCC----CCeeehhhHHHHHHhcC--C-----hhHHHHHHHHHhhcCcccCcccccchH
Q 004024 345 TMITGYAQSGEITHARNLFDRMPQ----HDCISWAAIIAGYAQSG--Y-----SEDSLRLFIEMKRYGERLNRSPFTSVL 413 (778)
Q Consensus 345 ~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g--~-----~~~Al~l~~~m~~~g~~pd~~t~~~ll 413 (778)
.+.+..|+.+++.+.. .+...|...+.--..++ - .+.+..+|+++.... +-+...|...+
T Consensus 150 --------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya 220 (493)
T 2uy1_A 150 --------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYS 220 (493)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 0112222222222110 12223433333211111 0 123445565555432 11222333333
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhc------------cCCChhHHHHHHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEA-YHAFEEI------------VDKDVISWNTMIA 480 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m------------~~~d~~~~~~li~ 480 (778)
.-+...|+++.|+.+++..++. +.+..++.. |+...+.++. ..+.+.. .......|...+.
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 4444556666666666666665 333333322 2221111111 0111110 0011245666666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC-SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
.+.++|..+.|..+|++. .. ..++...|......- ...++.+.|..+|+...+.++-. ...+...++...+.|..
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCH
Confidence 666677778888888777 21 111222332211111 12335778888888777654333 33455667777777888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 560 DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
+.|..++++.+ .....|...+.-=..+|+.+.+..++++..+
T Consensus 371 ~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888773 2456777777666677777777776666553
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=1.7e-05 Score=87.90 Aligned_cols=357 Identities=11% Similarity=0.050 Sum_probs=189.8
Q ss_pred hCC-CchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCC-hHHHHHHHHh
Q 004024 104 LNG-QLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--KRDVVSWNTMLSGYAQNGY-ADAARRIFDR 179 (778)
Q Consensus 104 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~-~~~A~~~~~~ 179 (778)
+.| .++.|+.+|+++.. .+-. |+++.+..+|++.. .|++..|..-+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 37788888877541 1111 88999999998865 3788888888877776663 3456667776
Q ss_pred cc---c---CCcchHHHHHHHHH----hcCCHHHHHHHHHhcccCCccHhhHHHHHHHhc---CChhHHHHHHhhCCCCC
Q 004024 180 ML---E---KNEISWNGLLAAYV----QNGRIEEACMLFESKANWEVVSWNSLMGGFVKQ---KRLGDAKWIFDRMPVRD 246 (778)
Q Consensus 180 m~---~---~d~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~d 246 (778)
.+ . .+...|...+.-+. ..++++.++.+|++++.........+-..|... .....+.++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~----- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-----
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH-----
Confidence 55 2 24456666665543 345678888898888774332223333333221 111112221111
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCC-------hHHHHHHHHhCCC--C-CcchH
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAP----VKDVFTWTAMVSGYVQNGK-------VDEARMIFDAMPE--K-NTVSW 312 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~--~-~~~t~ 312 (778)
+. +.+..|+.+++.+. ..+...|...+.--..++. .+.+..+|+++.. | +...|
T Consensus 149 ----------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW 216 (493)
T 2uy1_A 149 ----------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY 216 (493)
T ss_dssp ----------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 10 11222232222211 0123345554443222211 2234556666554 2 55566
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc--cccccHHHHHHHHHHhcCChhHH-HHHhhhCC--C----------CCeeehhhH
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT--CKNVASWNTMITGYAQSGEITHA-RNLFDRMP--Q----------HDCISWAAI 377 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~--~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m~--~----------~d~~~~~~l 377 (778)
...+.-+...|+.+.|..+++.++ +.+...+. .|+...+.++. ..+.+... + .....|...
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 666666667777777777777766 22222222 23222111111 11111110 0 011345555
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH-H--hcccc-cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS-T--CANLA-SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a--~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
+.-+.+.+..+.|..+|.+. +. |. .++...+. | -...+ +.+.|+.+++..++.. +.++..+...++...+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 66565667788888888877 21 22 12221111 1 11122 5788888888877753 3345556667788888
Q ss_pred cCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+.++++++..
T Consensus 367 ~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888874 3566788777777777888888787777664
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=5.3e-07 Score=92.33 Aligned_cols=190 Identities=6% Similarity=-0.057 Sum_probs=132.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILS 515 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~ 515 (778)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|++.+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566777888899999999999988754 3677888889999999999999999998887 5665 456777888
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
++...|++++|...|....+. .|+. ..+...+....+.++..+... .......++..+...+ +.+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 889999999999999887643 2211 011112222222211111111 2223334444444444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhc-CCcchHHHHHHHHHh
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAAS-GRWGDVSKVRLKMRD 637 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g~~~~a~~~~~~m~~ 637 (778)
.+.++++++++|++......+..++... +++++|.+++....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999887778888888877 779999999987765
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3e-06 Score=74.65 Aligned_cols=119 Identities=11% Similarity=-0.002 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667778888899999999888776 3344 47789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 004024 621 ASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFK 681 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~ 681 (778)
..|++++|.+.++...+.. |. ....|...++...+.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~----p~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD----AE----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH----HH----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC----cc----------------cCCchhHHHHHHHHHHHHHh
Confidence 9999999999988776532 11 01236666777766666554
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=5.9e-06 Score=71.74 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|...++++ ... .+..+|..+...+...|+.+.|...+++++++.|+++..+..++.++.
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344555666666666666666666655 122 356788888888899999999999999999999999888888888876
Q ss_pred hcC
Q 004024 621 ASG 623 (778)
Q Consensus 621 ~~g 623 (778)
..|
T Consensus 123 ~~g 125 (125)
T 1na0_A 123 KQG 125 (125)
T ss_dssp HHC
T ss_pred hcc
Confidence 654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=4.8e-06 Score=83.71 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=138.5
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChhH-------------
Q 004024 453 KCGSVEEAYHAFEEIVD--K-DVISWNTM-------IAGYARHGFGKDALMLFESMKTVGIKPDDIT------------- 509 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d~~~~~~l-------i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t------------- 509 (778)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+.+-.+ +.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999865 3 56689888 4666666666677666665444 5554321
Q ss_pred ---------HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 004024 510 ---------MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDA----A 576 (778)
Q Consensus 510 ---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 576 (778)
......++...|++++|.+.|..+.. ..|+....-.+..++.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 23355678889999999999998864 3464435556667899999999999999877434433 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEME--PE-NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~--p~-~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++..|..++...|+.++|+..++++.+-. |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999998543 54 4457789999999999999999999998873
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.28 E-value=4.7e-05 Score=78.13 Aligned_cols=159 Identities=8% Similarity=0.071 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCc------
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGK--DALMLFESMKTVGIKP-DDITMVGILSACSHTGL------ 522 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~------ 522 (778)
++++++..+++++.+ +|..+|+--...+.+.|.++ ++++.++++.+ ..| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 678899999988865 57788888888888889888 99999999998 445 55566666666667676
Q ss_pred HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDE-AQNLMKNM-PF----EPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~----~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
++++++++..+... .| |...|+.+..++.+.|+..+ +.++.++. .. ..++..|..|..++...|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999888753 34 67778888888988888444 55677765 22 236778999999999999999999
Q ss_pred HHHHHHHh-cCCCCCchHHHHHHH
Q 004024 596 KAAEVIFE-MEPENAGMYVLLSNL 618 (778)
Q Consensus 596 ~~~~~~~~-l~p~~~~~y~~L~~~ 618 (778)
++++.+.+ .+|-....+...++.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHhccChHHHHHHHHHHhh
Confidence 99999997 899987777665544
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=7e-06 Score=71.98 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.++.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 444555666666666666666666554 2234 46678888888999999999999999999999999999999999998
Q ss_pred hcCCcc
Q 004024 621 ASGRWG 626 (778)
Q Consensus 621 ~~g~~~ 626 (778)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888764
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=5.1e-06 Score=78.06 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--HHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGA-CRLYGKT--ELA 594 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a-~~~~g~~--~~a 594 (778)
.|++++|...+....+.. +.+...|..+...|...|++++|.+.+++. ...| +...|..+..+ +...|+. +.|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544321 124455666667777777777777776665 2233 45677777777 6678887 889
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999999988888888999999999999998888877664
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=7.5e-06 Score=72.22 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+...|++++|++.|++..+ ..|+ +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~-----------------------------------~~~~~~~la 57 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPK-----------------------------------DAKLYSNRA 57 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTT-----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------------------cHHHHHHHH
Confidence 344566666666666666666666666655 2332 233444555
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 58 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 5555566666666555544 2233 466788888888899999999999999999999998999999998887664
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.25 E-value=2.1e-05 Score=80.75 Aligned_cols=162 Identities=12% Similarity=0.021 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hh
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD--K-DV------ISWNTMIAGYARHGFGKDALMLFESMKTVGIK---PD--DI 508 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~------~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~---pd--~~ 508 (778)
.+...+..|...|++++|.+.+++..+ + +. ..+..+...|...|++++|++.|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334567788899999999999886543 1 11 22344556677788999999999998763221 11 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCCC-H
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGRLDEAQNLMKNM-P------FEPD-A 575 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~------~~p~-~ 575 (778)
++..+...+...|++++|..+|+...+.....|+ ...|..+...|.+.|++++|.+.+++. . ..+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999988733222222 257888999999999999999998765 1 1111 5
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 004024 576 ATWGALLGACRLYGKTELA-EKAAEVIFEM 604 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a-~~~~~~~~~l 604 (778)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 8878888764
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.25 E-value=4e-05 Score=74.47 Aligned_cols=171 Identities=11% Similarity=-0.087 Sum_probs=131.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 004024 426 KQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHG----FGKDALMLFESMKT 500 (778)
Q Consensus 426 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g----~~~~Al~l~~~m~~ 500 (778)
.+.+....+.| ++.....|..+|...|++++|.+.|++..+ .++.++..|...|.. | +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 566777788889889999999999998765 467788888888887 6 89999999999987
Q ss_pred CCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 004024 501 VGIKPDDITMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPN---SKHYTCMVDLLGR----AGRLDEAQNLMKNM 569 (778)
Q Consensus 501 ~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~m 569 (778)
.| +...+..+...+.. .++.++|.++|+...+. .|. +..+..|..+|.. .+++++|++.+++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 55567777777776 78999999999988643 342 6778888888888 78999999999887
Q ss_pred -CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 004024 570 -PFEPDAATWGALLGACRLY-G-----KTELAEKAAEVIFEMEP 606 (778)
Q Consensus 570 -~~~p~~~~~~~Ll~a~~~~-g-----~~~~a~~~~~~~~~l~p 606 (778)
...+++..+..|...+... | |.++|...++++.+..+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3334566777777776543 3 89999999999998754
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=6e-06 Score=86.82 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=108.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+++.+.- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 345677788888888999999999988887 44543210 001111100 0 0145677788
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...++++++++|+++.++..|+.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999998888776 3445 4778999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 004024 629 S-KVRLKMR 636 (778)
Q Consensus 629 ~-~~~~~m~ 636 (778)
. +.++.|-
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4 4555553
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.23 E-value=8.8e-06 Score=75.04 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH--HH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS--NL 618 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~--~~ 618 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...+++++++.|+++..+..+. ..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666554 2233 4667888888888999999999999999999999887775444 44
Q ss_pred hhhcCCcchHHHHHHHHH
Q 004024 619 YAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~ 636 (778)
+...|++++|.+.+....
T Consensus 127 ~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchH
Confidence 888899999998877654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=3e-06 Score=85.21 Aligned_cols=138 Identities=14% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLL 553 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l 553 (778)
-.....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++..|....+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 3455667778888888888887766 3466554445555778888888888888755431 1 121 23567788889
Q ss_pred hhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 554 GRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+.|++++|++.+++. +..|. ...+..+..+++..|+.++|...++++.+.+|+ +.+...|.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 9999999999999877 33254 347778888999999999999999999999998 7766666543
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=2.1e-06 Score=82.62 Aligned_cols=171 Identities=6% Similarity=-0.082 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
..+......|.++.|.+.++.... .....|..+...+...|++++|++.|++..+ +.|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 344445556777777777765433 2455677888889999999999999999987 44432211100 0
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
.+.-. .. .....|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01355677778888889999988888776 3344 467888999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHH-HHHHHHHh
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVS-KVRLKMRD 637 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~-~~~~~m~~ 637 (778)
+++++|+++..+..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888888776 44554443
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=4.9e-06 Score=92.01 Aligned_cols=114 Identities=10% Similarity=0.013 Sum_probs=83.3
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELA 594 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a 594 (778)
...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555554432 23 3556677777777777888887777665 34554 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHH--hhhcCCcchHHHHHHH
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNL--YAASGRWGDVSKVRLK 634 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~--y~~~g~~~~a~~~~~~ 634 (778)
+..++++++++|+++..+..++.+ +...|++++|.+.++.
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988 8899999999998763
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=1.3e-05 Score=71.42 Aligned_cols=97 Identities=9% Similarity=-0.010 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...|..+...+...|++++|...+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5677778888888888888888888765 3344 4778889999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 004024 620 AASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~ 638 (778)
...|++++|.+.++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999998877653
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.18 E-value=0.00013 Score=74.80 Aligned_cols=158 Identities=13% Similarity=0.027 Sum_probs=120.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---Ch-----h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hHHHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DV-----I-SWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDD----ITMVG 512 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~-----~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~----~t~~~ 512 (778)
.+..+.+.|++++|...+++..+. +. . .+..+...|...|++++|++.|++....... +|. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999987552 11 1 2334666667778999999999999984333 232 25888
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDY----GVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWG 579 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 579 (778)
+...+...|++++|..+|+.+.+.. +..|. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887422 22222 347888999999999999999988765 12223 56888
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHhc
Q 004024 580 ALLGACRLYGK-TELAEKAAEVIFEM 604 (778)
Q Consensus 580 ~Ll~a~~~~g~-~~~a~~~~~~~~~l 604 (778)
.+..++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 59999999998875
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=6.1e-06 Score=76.55 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666677777777777777777665 3344 4667777777788888888888888888888888888888888888
Q ss_pred hhcCCcchHHHHHHHHHh
Q 004024 620 AASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~ 637 (778)
...|++++|.+.++...+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888887776654
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=1.6e-05 Score=68.15 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555666666667777776666655 2233 45566666666777777777777777777777777777777777777
Q ss_pred hcCCcchHHHHHHHHHh
Q 004024 621 ASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~ 637 (778)
..|++++|.+.++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777666554
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.16 E-value=6e-06 Score=75.49 Aligned_cols=101 Identities=7% Similarity=-0.014 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+.+.|++++|+..|++... +.|+. ...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~-----------------------------------~~~~~~lg 77 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYN-----------------------------------VDYIMGLA 77 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------------------------HHHHHHHH
Confidence 344566667777777777777777777776 45532 33344445
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|.+.|++++|.+.+++. .+.|+ +..|..+..++...|+++.|...+++++++.|++
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 5555555555555555444 23443 5577777777788888888888888888888765
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=4e-06 Score=73.51 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3555677888899999999998877 3455 5778999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 004024 623 GRWGDVSKVRLKMRDR 638 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~ 638 (778)
|++++|.+.++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998877653
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=1.2e-05 Score=74.44 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCE
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNK 654 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~ 654 (778)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888899999999999999999999999999999999999999999999999998877652
Q ss_pred EEEEEeCCCCCcchH-HHHHHHHHHHHHHHh
Q 004024 655 VHTFSVGDTLHPEKD-RIYAYLEELEFKLKQ 684 (778)
Q Consensus 655 ~~~f~~~d~~hp~~~-~i~~~l~~l~~~~~~ 684 (778)
.|... .+...|..+..++++
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHH
Confidence 34444 667777777776654
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=2.1e-05 Score=75.37 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=54.9
Q ss_pred hcCCHHHHHH---HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHH
Q 004024 453 KCGSVEEAYH---AFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVE 524 (778)
Q Consensus 453 k~g~~~~A~~---~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~ 524 (778)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322234456666666677777777777777665541 11111 123444444555555555
Q ss_pred HHHHHHHHchhhcCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 525 KGTEYFYSMNRDYGVIP-----NSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p-----~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
+|.+++........-.| ....+..+..++...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555554433211111 122334444444455555555444433
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=8.9e-05 Score=77.00 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-ChhHHHHH
Q 004024 441 CFVGNALLVMYCKCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARH-G-FGKDALMLFESMKTVGIKP-DDITMVGI 513 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~-g-~~~~Al~l~~~m~~~g~~p-d~~t~~~l 513 (778)
..+++.--..+...| .++++++.++.+.. ++..+|+--...+... + ++++++++++++.+ ..| |...|..-
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R 165 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYL 165 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 334444444455556 48888888887754 4566777766666665 6 77888888888876 445 44555555
Q ss_pred HHHHhccCcHH--------HHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CH
Q 004024 514 LSACSHTGLVE--------KGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR-------LDEAQNLMKNM-PFEP-DA 575 (778)
Q Consensus 514 l~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~-------~~eA~~~~~~m-~~~p-~~ 575 (778)
.....+.|..+ +++++++.+.+. .| |...|+.-..++.+.|+ ++++++.++++ ...| |.
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 55555555555 788888877754 23 55566667777777765 78888888766 3455 57
Q ss_pred HHHHHHHHHHHHcCChHH-----------------HHHHHHHHHhc---C------CCCCchHHHHHHHhhhcCCcchHH
Q 004024 576 ATWGALLGACRLYGKTEL-----------------AEKAAEVIFEM---E------PENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~-----------------a~~~~~~~~~l---~------p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
..|+-+-+.+...|.... -..+.+.+.++ . +.++-+...|+.+|...|+.++|.
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 889888877777665410 11222233332 1 345556789999999999999999
Q ss_pred HHHHHHHh
Q 004024 630 KVRLKMRD 637 (778)
Q Consensus 630 ~~~~~m~~ 637 (778)
++++.+.+
T Consensus 323 ~~~~~l~~ 330 (349)
T 3q7a_A 323 KVFEKLSS 330 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.11 E-value=2.2e-05 Score=69.07 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888889999999999999999876 4555 577899999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHh
Q 004024 619 YAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~~ 637 (778)
|...|++++|.+.++...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999987765
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.10 E-value=4.8e-06 Score=75.95 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=64.1
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG 589 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g 589 (778)
+...+...|++++|...|...... .| +...|..+..+|.+.|++++|++.+++. ...| ++..|..+..++...|
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 333444444444444444444321 22 3445555666666667777776666655 2344 4667888888889999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
+.+.|...+++++++.|+++......
T Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 104 ELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp CHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 99999999999999999887654433
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=1.2e-05 Score=68.42 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNL 618 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~ 618 (778)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 444556677777778888887777665 2233 4667888888888899999999999999999999 88889999999
Q ss_pred hhhc-CCcchHHHHHHHHHhCC
Q 004024 619 YAAS-GRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 619 y~~~-g~~~~a~~~~~~m~~~g 639 (778)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999888776543
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.10 E-value=2.9e-05 Score=67.26 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456777888889999999999988876 2234 57789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 004024 621 ASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~~ 638 (778)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999887763
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.10 E-value=6e-05 Score=72.03 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-C--
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---------KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKP-D-- 506 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~p-d-- 506 (778)
...++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.+++..+.- -.| +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 456677788888888999998888887644 134567888888999999999999998876520 022 2
Q ss_pred --hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 507 --DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 507 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 234667777888899999999998876542111111 22345566666677777777666654
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.3e-05 Score=69.53 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...+++++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555555555555555544 33444 3455555555556666666666666666666666556666666
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|...|++++|.+.++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666555443
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=9.6e-06 Score=89.65 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVE 524 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 524 (778)
..|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+ +.|+ ..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566777777777776543 3456677777777777777777777777766 4453 335555556666666666
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDL--LGRAGRLDEAQNLMK 567 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~--l~r~g~~~eA~~~~~ 567 (778)
+|.+.|+...+...-. ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666655432111 2222223322 455555555555554
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=3.3e-06 Score=76.74 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-------------AATWGALLGACRLYGKTELAEKAAEVIFEM------- 604 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l------- 604 (778)
+......+...|++++|++.+++. .+.|+ ...|..+..++...|++++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334445556666666666666654 12222 238888888888899999999999999988
Q ss_pred CCCCCchH----HHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 605 EPENAGMY----VLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 605 ~p~~~~~y----~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|+++..| ..++.++...|++++|.+.++...+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 8999999999999999998887654
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.04 E-value=3.2e-05 Score=67.61 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566777888888999999999998876 3344 5778999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 004024 620 AASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~ 638 (778)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999887653
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.02 E-value=2.1e-05 Score=73.76 Aligned_cols=128 Identities=7% Similarity=0.060 Sum_probs=81.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH-HhhcCCH--
Q 004024 484 RHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL-LGRAGRL-- 559 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~-l~r~g~~-- 559 (778)
..|++++|++.|++..+ ..| +...+..+...+...|++++|..+|+...+... .+...+..+..+ +.+.|++
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 34555566666665555 233 334555555556666666666666666554311 134556666666 6677777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 560 DEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7887777765 3344 367888888889999999999999999999999986655443
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.02 E-value=6.9e-05 Score=68.85 Aligned_cols=124 Identities=13% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG 554 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 554 (778)
..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|.+.|....+.. ..+...|..+..++.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3333344444444444444444433 222 22233333334444444444444444433321 112334444555555
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCChHHHHHHHHHHHh
Q 004024 555 RAGRLDEAQNLMKNM-PFEP-DAATWG--ALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 555 r~g~~~eA~~~~~~m-~~~p-~~~~~~--~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
+.|++++|.+.+++. ...| +...|. .+...+...|+++.|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555555555555443 1222 222332 222224455666666666665544
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=1.4e-05 Score=70.58 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHH
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG-------MYVL 614 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-------~y~~ 614 (778)
..+.-+...+.+.|++++|++.+++. .+.|+ ..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44667888888999999999998876 44554 778999999999999999999999999999998764 5677
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++++|...|++++|.+.++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999876544
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=7.4e-05 Score=67.12 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 455666666667777777777777776665 4454200 033444555
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
..|.+.|++++|.+.+++. ...| +...|..+..++...|+.+.|...++++++++|++...+..+..+...
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 5666666666666666554 2234 466788888888899999999999999999999998777777766544
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=2.1e-05 Score=69.08 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=66.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHhh
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEPD-A---ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVLLSNLYA 620 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~---~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~L~~~y~ 620 (778)
+...+.+.|++++|.+.+++. ...|+ . .+|..+..++...|+++.|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666777777777777665 22233 2 467777777888888888888888888888888 666888888888
Q ss_pred hcCCcchHHHHHHHHHh
Q 004024 621 ASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~ 637 (778)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877765
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=6.1e-05 Score=64.43 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 344555555566666666666666554 2233 4667888888888889999999999999999998877777766553
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.96 E-value=0.00052 Score=70.83 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC-hHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG--SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGF-GKDALMLF 495 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~-~~~Al~l~ 495 (778)
++.+..+...+++.. +.+..+|+.-.-.+.+.| .++++..+++++.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455555555555543 456666666666666666 37888888887754 566777777777777777 47888888
Q ss_pred HHHHHCCCCC-ChhHHHHHHHHHhcc--------------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhc---
Q 004024 496 ESMKTVGIKP-DDITMVGILSACSHT--------------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRA--- 556 (778)
Q Consensus 496 ~~m~~~g~~p-d~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--- 556 (778)
+++++ ..| |...|........+. +.++++++++...... .| |...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 88887 445 344454444444333 4567777777776642 34 455555555555544
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 557 --------GRLDEAQNLMKNM-PFEPDAATWGALLGAC-----RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 557 --------g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~-----~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
+.++++++.++++ ...||. .|.-+-.+. ...|..+.....+.++.+++|...+.|..|.+-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4567777777766 455654 454322222 124556677777778888888776666665443
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.93 E-value=4.4e-05 Score=77.89 Aligned_cols=183 Identities=8% Similarity=-0.022 Sum_probs=102.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHh
Q 004024 310 VSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQ 383 (778)
Q Consensus 310 ~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~ 383 (778)
..+..+...+...|++++|...+..++ +.+...+..+...|.+.|++++|...|++..+. +...|..+...|.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345555666666777777777777666 445667777788888888888888888876552 34567778888888
Q ss_pred cCChhHHHHHHHHHhhcCcccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
.|++++|+..|++....+ |+. ..+...+....... ... -+........+.+..+...+...+ .|+.++|.+
T Consensus 85 ~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 888999998888877643 332 23333332221111 111 112222333444555544443332 466666666
Q ss_pred HHHhccCCC---hhHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004024 463 AFEEIVDKD---VISWNTMIAGYARH-GFGKDALMLFESMKT 500 (778)
Q Consensus 463 ~f~~m~~~d---~~~~~~li~~~~~~-g~~~~Al~l~~~m~~ 500 (778)
.++...+.+ ......+-..+.+. +..++|.++|.+..+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 666554422 12222222233333 445556666655443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=5.3e-05 Score=66.25 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-------AGMYV 613 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~y~ 613 (778)
...|..+...+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888889999999888776 2233 57788888899999999999999999999998876 77889
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999988776
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=6.1e-05 Score=69.63 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++..+...+
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3445556666666677777777666655 23454 778889999999999999999999999999999988665554
No 167
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=5.5e-05 Score=66.31 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
.|..+...+...|++++|++.|++..+ ..|+ +...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~-----------------------------------~~~~~~~~a~~~ 48 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPE-----------------------------------DARGYSNRAAAL 48 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC-----------------------------------ChHHHHHHHHHH
Confidence 455555556666666666666666555 3332 234455555566
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHh
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME------PENAGMYVLLSNLY 619 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~y~~L~~~y 619 (778)
.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++ |++......+..+.
T Consensus 49 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 49 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 6666666666665554 23443 6678888888888888888999999988888 77766666665554
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.89 E-value=5.8e-05 Score=67.96 Aligned_cols=100 Identities=8% Similarity=-0.040 Sum_probs=63.9
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
.+...|++++|...|...... .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++...|+++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 334444444444444444321 22 3444555666666667777776666655 2334 3567788888888999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.|...+++++++.|+++........+
T Consensus 104 ~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 104 GAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999887766554433
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=5.6e-05 Score=79.32 Aligned_cols=96 Identities=11% Similarity=-0.045 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----------------AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|..+...|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455667777777888888888777665 22333 4789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887763
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00011 Score=79.76 Aligned_cols=187 Identities=7% Similarity=-0.078 Sum_probs=129.9
Q ss_pred HHHhcCCHHHHHHHHHhccCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh
Q 004024 450 MYCKCGSVEEAYHAFEEIVDK-----D---------------VISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDI 508 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~-----d---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~ 508 (778)
.+.+.|++++|.+.|..+.+. + ..++..|...|...|++++|++++.++...- ..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 355678888888888776431 1 0136778888999999999999988776521 112221
Q ss_pred ----HHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC
Q 004024 509 ----TMVGILSACSHTGLVEKGTEYFYSMNRD---YGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-----P--FEP 573 (778)
Q Consensus 509 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 573 (778)
....+-..+...|..+++.+++...... .+..+ ....+..+..+|...|++++|.+++++. . -+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1222223344568889988888776432 12222 3567788999999999999999988765 1 123
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---C----CchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 574 D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE---N----AGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 574 ~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~---~----~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
. ..+|..++..|...||+++|...+++++...|. + ...+..++.+|...|++++|.+.+...-
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 447888889999999999999999998876432 2 2356778888999999999988765553
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.84 E-value=0.00015 Score=69.39 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD--------------AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
...+..+...+.+.|++++|.+.+++. |-.|+ ..+|..+..++...|+++.|...+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344566677777888888888887765 22221 268888899999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|+++.++..++.+|...|++++|.+.++...+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999987765
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.79 E-value=8.4e-05 Score=81.64 Aligned_cols=144 Identities=10% Similarity=0.015 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
....|..+...|.+.|++++|+..|++..+ +.|+...+ . -++..+ ... -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHH--------HHHHHHHHHH
Confidence 345788888889999999999999998887 44443211 0 011100 000 0245677788
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...++++++++|++..++..|+.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 3445 4778999999999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHH
Q 004024 629 SKV-RLKMR 636 (778)
Q Consensus 629 ~~~-~~~m~ 636 (778)
.+- ++.|-
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 753 44443
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.78 E-value=0.002 Score=66.77 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHHhc-C-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-
Q 004024 440 GCFVGNALLVMYCKC-G-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGK--------DALMLFESMKTVGIKP- 505 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~-g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--------~Al~l~~~m~~~g~~p- 505 (778)
+..+++.-...+.+. + +.+++.+.++++.+ +|..+|+--...+.+.|..+ ++++.++++++ ..|
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~ 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGR 199 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTT
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCC
Confidence 344444444444444 4 66777777777765 45566766555555555555 88888888887 345
Q ss_pred ChhHHHHHHHHHhccCc-------HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCH------------------
Q 004024 506 DDITMVGILSACSHTGL-------VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRL------------------ 559 (778)
Q Consensus 506 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~------------------ 559 (778)
|...|........+.+. ++++++++..+... .| |...|+.+-.++.+.|+-
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 55566666666666664 67888888777643 34 555666666666666653
Q ss_pred --HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCchHHHHH
Q 004024 560 --DEAQNLMKNMP-F-------EPDAATWGALLGACRLYGKTELAEKAAEVIF-EMEPENAGMYVLLS 616 (778)
Q Consensus 560 --~eA~~~~~~m~-~-------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~-~l~p~~~~~y~~L~ 616 (778)
.+..++..++. . .+.+..+..|...|...|+.++|.++++.+. +.+|-....+.-.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 44455554441 1 2567788889999999999999999999987 67887655544433
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=0.00078 Score=75.75 Aligned_cols=168 Identities=11% Similarity=-0.009 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcc
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGF----------GKDALMLFESMKTVGIKPD-DITMVGILSACSHT 520 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~----------~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 520 (778)
..-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+ ..|+ ...|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 345678899988865 356678887777777777 8999999999998 5664 55788878888889
Q ss_pred C--cHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 004024 521 G--LVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG-RLDEAQNLMKNM-PFEP-DAATWGALLGACRLY------ 588 (778)
Q Consensus 521 g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~------ 588 (778)
| ++++++++++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 779999999999864 34 5666777778888889 899999999888 5556 578999888887763
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 589 --------GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 589 --------g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
+.++++.+.++++++++|++..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999999666
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=1.3e-05 Score=69.53 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 556 AGRLDEAQNLMKNM-PF---EPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~---~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
.|++++|++.+++. .. .|+ ..+|..|...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666554 23 233 44666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 004024 631 VRLKMRD 637 (778)
Q Consensus 631 ~~~~m~~ 637 (778)
.++...+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00019 Score=63.10 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.-|.+.|.+.|++++|+..|++..+ .+...|+.+..+|...|++++|++.|++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455556666666666666665532 2455566666666666666666666666554
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.74 E-value=0.00016 Score=61.09 Aligned_cols=97 Identities=18% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP---DAATWGALLGACR 586 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~Ll~a~~ 586 (778)
..+...+...|++++|..+|+...+.. ..+...|..+..++.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 333444444445555555444443321 113445566666777777777777776655 2333 4667888888888
Q ss_pred Hc-CChHHHHHHHHHHHhcCCCCC
Q 004024 587 LY-GKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 587 ~~-g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.. |+.+.|...++++++..|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 88 888888888888888888764
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.74 E-value=8.8e-05 Score=65.84 Aligned_cols=96 Identities=6% Similarity=-0.133 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRL 587 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~ 587 (778)
+..+...+...|++++|..+|....... +.+...|..+..++.+.|++++|...+++. ...| +...|..+..++..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3333334444444444444444333221 112444555666666666666666666554 2234 46678888888888
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 004024 588 YGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~ 607 (778)
.|+++.|...+++++++.|+
T Consensus 90 ~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 90 MESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888877
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.73 E-value=0.0015 Score=67.50 Aligned_cols=177 Identities=13% Similarity=0.026 Sum_probs=128.3
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCc-HHHHHHH
Q 004024 457 VEEAYHAFEEIVD---KDVISWNTMIAGYARHGF--GKDALMLFESMKTVGIKP-DDITMVGILSACSHTGL-VEKGTEY 529 (778)
Q Consensus 457 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-~~~a~~~ 529 (778)
++++...++.+.. ++..+|+--...+...|+ +++++++++++.+ ..| |...|..-...+.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5778888887754 578889988888888884 8999999999998 556 55677777777778888 6999999
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRA--------------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY----- 588 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~----- 588 (778)
+..+.+.. .-|...|+....++.+. +.++++++.+++. ...| |..+|+-+-+.+...
T Consensus 168 ~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 99998642 22555666666665554 5688999988876 3455 578998777666555
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCchHHHHHHHh---hhcCCcchHHHHHHHHHh
Q 004024 589 ------GKTELAEKAAEVIFEMEPENAGMYVLLSNLY---AASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 ------g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y---~~~g~~~~a~~~~~~m~~ 637 (778)
+-++.+...++++++++|++.-.+..++.+. ...|..+++...+..+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999854443333222 234666666666666665
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.72 E-value=7.9e-05 Score=65.08 Aligned_cols=114 Identities=10% Similarity=-0.051 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 35666666677777777777777776662 33 23334444444445555555555554443221 00
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 552 LLGRAGRLDEAQNLMKNMPFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++.
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 45666677777777788888888888877777 4555555555443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00013 Score=66.25 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.+|..+...|...|++++|++.+++..+..-. ++... ....+..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~ 57 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGN 57 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHH
Confidence 35666777777778888888877776652100 11000 0123444445
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCchHHHHHH
Q 004024 552 LLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE------NAGMYVLLSN 617 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~------~~~~y~~L~~ 617 (778)
.+...|++++|.+.+++. +-.++ ..++..+...+...|+++.|...+++++++.+. .+..+..++.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 137 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 137 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence 555555555555554443 10111 335566666677777777777777777765321 1345777888
Q ss_pred HhhhcCCcchHHHHHHHHH
Q 004024 618 LYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~ 636 (778)
+|...|++++|.+.++...
T Consensus 138 ~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 8888888888888776654
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00015 Score=65.81 Aligned_cols=136 Identities=15% Similarity=0.052 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PD---- 506 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd---- 506 (778)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.+++..+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988754 22 136777888888999999999999887652100 11
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004024 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD-AATWGALLGAC 585 (778)
Q Consensus 507 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~ 585 (778)
...+..+...+...|++++|.++++..... .++.+..+. ..++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 122333334444445555555444433221 111111111 33556666777
Q ss_pred HHcCChHHHHHHHHHHHhcC
Q 004024 586 RLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|+.+.|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777777654
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=6.1e-05 Score=68.40 Aligned_cols=117 Identities=14% Similarity=-0.001 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 551 (778)
..|......+...|++++|++.|++.++ +.|+...- +.....| +...|..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~------------------------~a~~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE------------------------EAFDHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT------------------------SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch------------------------hhhhhccchHHHHHHHHH
Confidence 3466667777888888888888888887 56651100 0000000 1224455555
Q ss_pred HHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 552 LLGRAGRLDEAQNLMKNM--------PFEPD-AATW----GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~----~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|...++++++++|++.+.+--+
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555555555555544433 44887 5588 9999999999999999999999999999997665444
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.67 E-value=0.00057 Score=59.66 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+..+...+.+.|++++|.+.+++. ...|+ +.++..+..++...|+.+.|...++++++..|+++........+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 3444555555666666666655544 12232 44566677777788888888888888888888876554444433
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00015 Score=79.57 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=88.6
Q ss_pred hccCcHHHHHHHHHHchhhcC--CC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYG--VI---P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGAL 581 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~--~~---p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~L 581 (778)
...|++++|..+++...+... +. | ...+++.|..+|...|++++|+.++++. +-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344555555555544432211 11 2 2456777788888888888888777664 34455 4578899
Q ss_pred HHHHHHcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 582 LGACRLYGKTELAEKAAEVIFE-----MEPENAGM---YVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 582 l~a~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
...|...|++++|+.+++++++ +.|++|.+ +..|...+...|++++|..+++.++++-.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887 46777654 457788899999999999999999885433
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.64 E-value=0.00015 Score=63.25 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~ 591 (778)
..+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. .+.|+ ...|..|..++...|+.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444555555544444432 22 3455666666777777777777777665 34553 66788888888888999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 004024 592 ELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~ 609 (778)
+.|...++++++++|+++
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 999999999999888764
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00012 Score=62.01 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN------AGMYV 613 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~y~ 613 (778)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999988876 3344 57789999999999999999999999999999998 77888
Q ss_pred HHHHHhhhcCCcchHHHHH
Q 004024 614 LLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~ 632 (778)
.++.++...|+.++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 8999999999888876543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.60 E-value=0.00012 Score=76.87 Aligned_cols=146 Identities=12% Similarity=-0.012 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..|..+...+.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677777888999999999998877 5566442 234444444443321 2357778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh-hcCCcchHH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA-ASGRWGDVS 629 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~-~~g~~~~a~ 629 (778)
|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888776 3445 46788889999999999999999999999999999988888888844 456677777
Q ss_pred HHHHHHHhC
Q 004024 630 KVRLKMRDR 638 (778)
Q Consensus 630 ~~~~~m~~~ 638 (778)
+.++.|-+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777766543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=5.3e-05 Score=65.58 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKA 597 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~ 597 (778)
|++++|...|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555554442100012 3455666777777788888888777766 33443 66788888888999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHH
Q 004024 598 AEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 598 ~~~~~~l~p~~~~~y~~L~~~ 618 (778)
++++++..|+++........+
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHH
Confidence 999999999887654433333
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00028 Score=74.98 Aligned_cols=137 Identities=9% Similarity=-0.014 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMV 550 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 550 (778)
...|..+...|.+.|++++|++.|++..+ +.|+.. ..-..+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 34688888889999999999999988776 111110 000011110 1222 456788889
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++|++...+..|+.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 55664 678999999999999999999999999999999999999999999988887776
Q ss_pred HH
Q 004024 629 SK 630 (778)
Q Consensus 629 ~~ 630 (778)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.0004 Score=76.15 Aligned_cols=96 Identities=7% Similarity=-0.061 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----------------AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|..+...|.+.|++++|...+++. .+.|+ ..+|..+..++...|+++.|...++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334555666667777777777766655 11222 5788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00021 Score=75.86 Aligned_cols=63 Identities=8% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999999999999988765
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00066 Score=73.56 Aligned_cols=158 Identities=10% Similarity=-0.031 Sum_probs=119.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDD----------------ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS 543 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 543 (778)
..+...|++++|++.|.+..+..-.... ..+..+...|...|+++++.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4467789999999999999884322111 136778899999999999999999887654444433
Q ss_pred H----HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 004024 544 K----HYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME------ 605 (778)
Q Consensus 544 ~----~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------ 605 (778)
. ..+.+...+...|..++|.+++++. ...+. ..++..|...+...|+++.|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 3444555566789999999887665 22333 4578889999999999999999999988642
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.....|..++.+|...|++++|...++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999877653
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00032 Score=56.86 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677778888888888888888766 3334 46788889999999999999999999999999999999999998887
Q ss_pred hcC
Q 004024 621 ASG 623 (778)
Q Consensus 621 ~~g 623 (778)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.00017 Score=66.47 Aligned_cols=123 Identities=16% Similarity=0.038 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVG------IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
...|......+.+.|++++|+..|++....- -.|+...+ ..+. .-+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHH
Confidence 4467777788888888888888888877620 01111100 0000 113456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-chHHHHHHHh
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA-GMYVLLSNLY 619 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-~~y~~L~~~y 619 (778)
|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 778888888999999999888776 34554 67899999999999999999999999999999987 5555555443
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.0003 Score=58.83 Aligned_cols=64 Identities=23% Similarity=0.188 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|..+...+...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4778999999999999999999999999999999999999999999999999999999887654
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.00029 Score=77.41 Aligned_cols=115 Identities=13% Similarity=-0.011 Sum_probs=89.1
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHH
Q 004024 552 LLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYV 613 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~ 613 (778)
.+...|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+..++++++ +.|+++ ..|.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999888665 23344 45889999999999999999999999987 356665 4578
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.|+.+|..+|++++|..++++..+.-. +.- ...||.+.++...|.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887654211 111 13699999999988888766654
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.00038 Score=75.29 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHhhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHH
Q 004024 552 LLGRAGRLDEAQNLMKNM------PFEP---D-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYV 613 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m------~~~p---~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~ 613 (778)
-+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+..++++++ +.|++| ..|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766544 1223 2 34788888889999999999999998886 345554 4577
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
.|+.+|..+|++++|..++++..+.- .+.- ...||.+.+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999887765421 1111 2369999999999999888876
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.00033 Score=60.06 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=63.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.+.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 3345 4678888989999999999999999999999999999999999999999999999999887665
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.31 E-value=0.0002 Score=75.10 Aligned_cols=112 Identities=8% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLY 588 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+..+...+...|++++|...|...... .|+.. .+...|+.+++...+. ..+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4455555666667777777777665532 23221 1223344444443332 13788888999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886654
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.30 E-value=0.00078 Score=55.41 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 572 EPDAATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 572 ~p~~~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.+|+..|..+..++...++ .+.|...++++++++|+++.+...|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567888888888876665 79999999999999999999999999999999999999999999987644
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.20 E-value=0.00015 Score=65.75 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=64.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 554 GRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK----------TELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~----------~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
.|.+++++|.+.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666555 3344 35566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 004024 622 SG-----------RWGDVSKVRLKMRDR 638 (778)
Q Consensus 622 ~g-----------~~~~a~~~~~~m~~~ 638 (778)
.| ++++|.+.+++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999988764
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.00041 Score=74.89 Aligned_cols=104 Identities=16% Similarity=0.037 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHHHHHH
Q 004024 556 AGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYVLLSN 617 (778)
Q Consensus 556 ~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~~L~~ 617 (778)
.|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666655443 23344 34788888889999999999999998886 345554 45788999
Q ss_pred HhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHH
Q 004024 618 LYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEE 677 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 677 (778)
+|..+|++++|..++++..+.-. +.- ...||.+.+++..|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME-VAH-----------------GKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHc-----------------CCCChHHHHHHHHHhc
Confidence 99999999999999877654211 111 2369999888877653
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0013 Score=55.39 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356688889999999999999999999999999999999999999999999999999999887763
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.92 E-value=0.00063 Score=61.54 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=61.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 561 (778)
.+.+++++|++.+++..+ ..|+ ...+..+..++...|+++.|.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 345556666666666666 4553 334444555555554433222111 01446
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCCch
Q 004024 562 AQNLMKNM-PFEPD-AATWGALLGACRLY-----------GKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 562 A~~~~~~m-~~~p~-~~~~~~Ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
|+..+++. .+.|+ ..+|..|..+|... |++++|...++++++++|++..+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 66666555 44554 45677777777665 58999999999999999998433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.86 E-value=0.0042 Score=49.94 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567888889999999999999999999999999999999999999999999999999887765
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.85 E-value=0.017 Score=59.91 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh
Q 004024 470 KDVISWNTMIAGYA--RHGF---GKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS 543 (778)
Q Consensus 470 ~d~~~~~~li~~~~--~~g~---~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 543 (778)
.|...|...+.|.. ..+. ..+|+.+|++.++ ..|+.. .+..+..++.. .. .++ |..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~----~~~--~~~ 253 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RH----SQH--PLD 253 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HH----HHS--CCC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hh----ccC--CCc
Confidence 47788888876654 3333 4789999999998 788753 33333333320 00 001 100
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMPFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
... ...+.+|.+....++.. .++.+|.++.-.....|+++.|...++++++++|+ ...|..++.++.-.
T Consensus 254 ~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 254 EKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred hhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 000 00012222222222222 23445555444444455555555555555555543 34455555555555
Q ss_pred CCcchHHHHHHHHH
Q 004024 623 GRWGDVSKVRLKMR 636 (778)
Q Consensus 623 g~~~~a~~~~~~m~ 636 (778)
|++++|.+.++...
T Consensus 324 G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 324 GMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.85 E-value=0.0018 Score=68.24 Aligned_cols=356 Identities=12% Similarity=0.157 Sum_probs=222.4
Q ss_pred HhHHHHHHhhcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCC--CCCcchHHHHHHHHHcCCChhH
Q 004024 64 WNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMP--QRDLVSWNVMISGYVRNKSLSA 141 (778)
Q Consensus 64 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~ 141 (778)
|..+-.+.+..++..+|+..|-+. .|+..|..+|....+.|.+++-.+.+.-.. .++...=+.|+-+|++.+++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence 455666777888888887655433 466678889999999999999998877665 3677778999999999999776
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc------------------------cCCcchHHHHHHHHHh
Q 004024 142 ARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML------------------------EKNEISWNGLLAAYVQ 197 (778)
Q Consensus 142 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~d~~t~~~ll~~~~~ 197 (778)
-..+. ..||+.-...+.+-|...|.++.|.-+|..+. ..+..||-.+-.+|..
T Consensus 135 lEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd 211 (624)
T 3lvg_A 135 LEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 211 (624)
T ss_dssp TTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHH
T ss_pred HHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhC
Confidence 43332 24777777888888999999999988888763 1367899999999999
Q ss_pred cCCHHHHHHHHHhc-ccCCccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHh--
Q 004024 198 NGRIEEACMLFESK-ANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFE-- 271 (778)
Q Consensus 198 ~g~~~~a~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~-- 271 (778)
.+++.-|.-.--.+ +..+ -...|+..|-+.|.+++-..+++.-. ....-.++-|.-.|+|-. .++-.+-++
T Consensus 212 ~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHlklf 288 (624)
T 3lvg_A 212 GKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF 288 (624)
T ss_dssp SCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTS
T ss_pred chHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 99887664332111 1111 12345556777777777777776544 345667777777777752 333333332
Q ss_pred --hCCCC-------CeehHHHHHHHHHhcCChHHHHHH-------------HHhCCC--CCcchHHHHHH----------
Q 004024 272 --EAPVK-------DVFTWTAMVSGYVQNGKVDEARMI-------------FDAMPE--KNTVSWNAMIA---------- 317 (778)
Q Consensus 272 --~m~~~-------d~~~~~~li~~~~~~g~~~~A~~l-------------~~~m~~--~~~~t~~~ll~---------- 317 (778)
++--| ....|.-++-.|.+-..++.|... |.++.. .|...|...|+
T Consensus 289 ~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL 368 (624)
T 3lvg_A 289 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 368 (624)
T ss_dssp SSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTS
T ss_pred HHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHH
Confidence 22222 344677788778777777766432 111111 13333333333
Q ss_pred -----HHhccCChHHHHHHHHhhc-------------cc-cccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe-------
Q 004024 318 -----GYVQTKRMDMARELFEAMT-------------CK-NVASWNTMITGYAQSGEITHARNLFDRMPQHDC------- 371 (778)
Q Consensus 318 -----~~~~~~~~~~a~~i~~~~~-------------~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------- 371 (778)
++...=|.....+++.... .. +..+-.++-+.|....+++.-+.-.+.-..=|.
T Consensus 369 ~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rL 448 (624)
T 3lvg_A 369 NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL 448 (624)
T ss_dssp HHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHH
T ss_pred HHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 3333333334444444332 22 334555777788887777665555443322221
Q ss_pred -----eehhhH-HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 372 -----ISWAAI-IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 372 -----~~~~~l-i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
.-+.-+ ...|-+++++++++.+.+ ..--|.-.+...+.+++.+.+.++.++.+..|
T Consensus 449 EkHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 449 EKHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HTCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred hhCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 111111 223566777777765432 22345556667778888888888888888776
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.76 E-value=0.0085 Score=53.25 Aligned_cols=111 Identities=10% Similarity=-0.105 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
++.++|++.|++..+.| .|+.. +-..+...+.+++|.++|+...+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------------------------
Confidence 35666777777666655 23322 334444445555555555554432
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHh
Q 004024 566 MKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRD 637 (778)
Q Consensus 566 ~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~ 637 (778)
-++..+..|...+.. .+|.++|...++++.+. .++..+..|+.+|.. .++.++|.+.+++..+
T Consensus 55 -------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 -------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp -------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 233344444444443 45555555555555554 345556666666666 5666666666665555
Q ss_pred CC
Q 004024 638 RG 639 (778)
Q Consensus 638 ~g 639 (778)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.60 E-value=0.0066 Score=53.98 Aligned_cols=106 Identities=4% Similarity=-0.043 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH----TGLVEKGTE 528 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~ 528 (778)
.+++++|.+.|++..+ .+.... |...|...+..++|++.|++..+.| +......+-..+.+ .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3568899999998755 344555 6677777778899999999999865 45555566666655 667777777
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKN 568 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~ 568 (778)
+|+...+. | +...+..|..+|.. .+++++|.+.+++
T Consensus 83 ~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 83 YYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 77766543 2 33344444444444 4444444444443
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.53 E-value=0.017 Score=64.83 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=115.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCc----------HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGL----------VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLL 553 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 553 (778)
...++|++.++++.+ +.|+..| |+.--.++.+.|. +++++++++.+.+. .| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 345789999999999 7887654 5555555556666 89999999999864 34 455677677778
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc------
Q 004024 554 GRAG--RLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG-KTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS------ 622 (778)
Q Consensus 554 ~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~------ 622 (778)
.+.| ++++|+++++++ ...| +..+|+.-..+....| ..+.+...++++++.+|.|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 789999999988 3444 6789999999988999 889999999999999999999999999988774
Q ss_pred --------CCcchHHHHHHHHH
Q 004024 623 --------GRWGDVSKVRLKMR 636 (778)
Q Consensus 623 --------g~~~~a~~~~~~m~ 636 (778)
++++++.+..+..-
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 44567766655443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.41 E-value=0.011 Score=63.70 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPE 607 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~ 607 (778)
..+++.|..+|...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 355777777777778888777776655 34455 44788999999999999999999999887 4677
Q ss_pred CCchHHH
Q 004024 608 NAGMYVL 614 (778)
Q Consensus 608 ~~~~y~~ 614 (778)
+|.+-.+
T Consensus 420 Hp~~~~l 426 (433)
T 3qww_A 420 HPYISEI 426 (433)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 7655443
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.41 E-value=0.011 Score=50.36 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+.++|...|+...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555555554 2332 2334444444555555555555555443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.38 E-value=0.0074 Score=49.62 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEP-DAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556667777777766655 2333 345 666666666667777777777777777777666554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.33 E-value=0.019 Score=61.89 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPEN 608 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~ 608 (778)
.+++.+..+|...|++++|+.++++. +..|+ ..+++.|...+...|++++|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44556666666666666666665544 34455 44788888889999999999999998886 46887
Q ss_pred CchHHHH
Q 004024 609 AGMYVLL 615 (778)
Q Consensus 609 ~~~y~~L 615 (778)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6655444
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.29 E-value=0.011 Score=48.96 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444455555555555554444 2332 223444444444444444444444443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.24 E-value=0.016 Score=47.48 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=58.5
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-ChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSK-HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLY 588 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~ 588 (778)
....+...|++++|.+.|+...+. .| +.. .|..+..+|.+.|++++|.+.+++. ...|+ ..+|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 445667788888888888887754 34 445 7777888888888888888888776 33443 223311
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 004024 589 GKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+.++.+...+++..+.+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 455666777777777777654
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.2 Score=58.66 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.+..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345567777777766554 345667777777777777777777777654
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.11 Score=60.88 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 349 GYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 349 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.+.++|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455666666666665553 23456666666666666666666666654
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.89 E-value=0.24 Score=42.52 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=91.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|..++..++..+.... .+..-++.++.-...+-+-+-..+.++++-+.|.+. .+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHH
Confidence 346666777777666542 233344445544444444444455555554443332 355565555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
.-+-.+. .+....+--|......|..++-.++...++.-+|-+|...+-++++|.+.|...++.++++..-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555543 233344555677778899898888888877777778899999999999999999999999999999985
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.88 E-value=0.021 Score=56.76 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=72.3
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHhhhc-CCcch
Q 004024 559 LDEAQNLMKNM-PFEPD---AATWGALLGACRL-----YGKTELAEKAAEVIFEMEPEN-AGMYVLLSNLYAAS-GRWGD 627 (778)
Q Consensus 559 ~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~y~~L~~~y~~~-g~~~~ 627 (778)
+.+|...+++. .+.|+ ...|.+|...|.. -|+.++|++.+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 55666666655 46676 5688888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004024 628 VSKVRLKMRDRGVKKVTG 645 (778)
Q Consensus 628 a~~~~~~m~~~g~~k~~g 645 (778)
+.+.++.......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988876665565
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.80 E-value=0.06 Score=55.71 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=34.0
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.++++|.++..|..++.++...|++++|...++++...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 346789999999999999998999999999999887765
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.70 E-value=0.039 Score=49.22 Aligned_cols=65 Identities=8% Similarity=-0.151 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 573 PDAATWGALLGACRLYG---KTELAEKAAEVIFEME-P-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++..+.-.+.+++.+.+ +.++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3345555555555554 4 2334444555555555555555555554443
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.47 Score=43.35 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987643 4455555666777765554
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
.-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43332221 1 14444455556788888888887775333222 1224577777777776544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.69 E-value=0.14 Score=42.54 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-----P----FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666677776666665543 1 1234668899999999999999999999999999999976654
Q ss_pred HH
Q 004024 614 LL 615 (778)
Q Consensus 614 ~L 615 (778)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.63 E-value=0.0053 Score=64.82 Aligned_cols=232 Identities=12% Similarity=0.157 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccCChH
Q 004024 249 SWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 249 ~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~~~~ 326 (778)
+|..|..++.+.|.+.+|.+.|-+ ..|+..|..+|.+..+.|.+++-+..+...++. ++..=+.++-+|++.+++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 445555555555555544444322 223344445555555555555555544444332 3344444555555555543
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCC------------------------CCCeeehhhHHHHHH
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMP------------------------QHDCISWAAIIAGYA 382 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------------~~d~~~~~~li~~~~ 382 (778)
+-.++. ..+|+.-.....+-+...|.++.|.-+|..+. ..++.+|-.+-.+|.
T Consensus 134 elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 134 ELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 321111 13444444444455555555555555554442 246678999999999
Q ss_pred hcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHH
Q 004024 383 QSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 383 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
..+.+.-|--.--.+. ....-+..++.-|-..|.+++-..+++.-. |+ .....+++-|.-.|+|- +.++-.
T Consensus 211 d~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred CchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHH
Confidence 9988876644332222 233345667777888888887777776654 33 35677888999999986 344444
Q ss_pred HHHHhccC----C-------ChhHHHHHHHHHHHcCChHHHHH
Q 004024 462 HAFEEIVD----K-------DVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 462 ~~f~~m~~----~-------d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.++.... | ....|.-++-.|.+...++.|..
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44433221 2 44578888888888888887654
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.56 E-value=0.29 Score=43.63 Aligned_cols=40 Identities=20% Similarity=-0.020 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
..+-.|.-++.+.|+++.|.+.++++++++|+|..+..+.
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3445566778899999999999999999999985554443
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.30 E-value=0.16 Score=41.26 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 541 PNSKHYTCMVDLLGRAGR---LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++...+..+..++...+. .++|..++++. ...|+ +..+..|...+...|+++.|...++++++.+|.+ .....+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 466777777777755544 68888888876 45665 5677778888889999999999999999999984 334344
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.23 Score=56.66 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=49.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
.-|...|+++.|..+++++...-|.+-.++..|+.+|...|+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44677899999999999999999999999999999999999999999888876
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.45 E-value=1.1 Score=37.01 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEME-------PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~-------p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.-.-.|...+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999999853 23456789999999999999999999888765
No 231
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.90 E-value=9.2 Score=35.71 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=39.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 242 MPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 242 m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
+..+|..+-...+.++.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|..+-...+.++..
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445555555555555555543333344444445544444555555555544322222333333455555555555555
Q ss_pred cCC
Q 004024 322 TKR 324 (778)
Q Consensus 322 ~~~ 324 (778)
.+.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 554
No 232
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.87 E-value=9.4 Score=35.33 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHH
Q 004024 238 IFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIA 317 (778)
Q Consensus 238 ~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~ 317 (778)
+...+..+|..+-...+.++.+.|..+....+...+..+|...-...+.++.+.|..+..-.+...+..++..+-...+.
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333445555555555555555554433444444444454444445555555554332222333333345555555555
Q ss_pred HHhccCCh
Q 004024 318 GYVQTKRM 325 (778)
Q Consensus 318 ~~~~~~~~ 325 (778)
++...+..
T Consensus 161 aL~~~~~~ 168 (201)
T 3ltj_A 161 ALGEIGGE 168 (201)
T ss_dssp HHHHHCSH
T ss_pred HHHHhCch
Confidence 55555543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.80 E-value=9.4 Score=34.73 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=84.6
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
..|+++.|.++-..+ .+...|..|.+...+.|+++-|++.|.+..+ +..+.--|...|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 456777777765544 3677899999999999999999999998765 44455556667887776666655
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCC
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR-AGRLDEAQNLMKNMP 570 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g~~~eA~~~~~~m~ 570 (778)
....| -++.....+...|+++++.++|.+.. --|.. -.+++ -|.-+.|.++.++++
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA-------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLA-------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHH-------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHH-------HHHHHHcCcHHHHHHHHHHhC
Confidence 55544 24455556677899999998886642 22211 12222 466777777877763
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.53 E-value=3.4 Score=35.96 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=13.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
-++.+.|+++.|.+..+.+++.+|+|
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34444555555555555555555554
No 235
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.16 E-value=9 Score=35.78 Aligned_cols=183 Identities=7% Similarity=0.022 Sum_probs=83.9
Q ss_pred CchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcc
Q 004024 107 QLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEI 186 (778)
Q Consensus 107 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~ 186 (778)
..+....+...+..+|...-...+..+.+.|..+..-.+.+.+..+|..+-...+.++.+.|..+....+...+..+|..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33334444455555665555555566666555444444444444555544444455555554432222222222233333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHH
Q 004024 187 SWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEA 266 (778)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A 266 (778)
.-...+.+ +.+.|..+....+...+..+|..+-...+.++.+.|..+..
T Consensus 97 vr~~a~~a-------------------------------L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 145 (211)
T 3ltm_A 97 VRQSAAVA-------------------------------LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV 145 (211)
T ss_dssp HHHHHHHH-------------------------------HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHH-------------------------------HHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33333333 33334333333333333445555555555555555554433
Q ss_pred HHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC-CCCcchHHHHHHHHhc
Q 004024 267 QRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP-EKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 267 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~~~~t~~~ll~~~~~ 321 (778)
..+.+.+..+|...-...+.++.+.|. .++...+..+. .++..+-...+.++..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 333344444555455555555555554 33444444333 2344444444444443
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.99 E-value=0.34 Score=48.09 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhcc-----CcHHHHHHHHHHchhhcCCCC--ChHHHHHHHHHHhhc-C
Q 004024 489 KDALMLFESMKTVGIKPD---DITMVGILSACSHT-----GLVEKGTEYFYSMNRDYGVIP--NSKHYTCMVDLLGRA-G 557 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~pd---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~-g 557 (778)
.+|..++++.++ +.|+ ...+..+...|... |+.++|.++|++..+ +.| +..++..+.+.|++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 455555555555 5555 23444444444442 555555555554442 233 134444444444442 4
Q ss_pred CHHHHHHHHHh
Q 004024 558 RLDEAQNLMKN 568 (778)
Q Consensus 558 ~~~eA~~~~~~ 568 (778)
+.++|.+.+++
T Consensus 255 d~~~a~~~L~k 265 (301)
T 3u64_A 255 NRAGFDEALDR 265 (301)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44444444433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.98 E-value=2.3 Score=36.32 Aligned_cols=75 Identities=17% Similarity=0.017 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDE---AQNLMKNM-PFE-P-D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~e---A~~~~~~m-~~~-p-~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
|+..+---+..+|.++....+ ++.++++. ... | + -...-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554443 55555444 111 2 1 123344567788999999999999999999999965554
Q ss_pred HH
Q 004024 614 LL 615 (778)
Q Consensus 614 ~L 615 (778)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 238
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.93 E-value=7.6 Score=35.96 Aligned_cols=175 Identities=7% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHH
Q 004024 113 QVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLL 192 (778)
Q Consensus 113 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll 192 (778)
.+.+.+..+|...-...+..+.+.|.....-.+.+.+..+|..+-...+.++.+.|..+....+...+..+|...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34445555666666666666666665444444444444555544444455555555433332233323233433333333
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhh
Q 004024 193 AAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEE 272 (778)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~ 272 (778)
.+.. +.|..+....+...+..+|..+-...+.++.+.|..+....+.+.
T Consensus 98 ~aL~-------------------------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 146 (201)
T 3ltj_A 98 VALG-------------------------------QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKA 146 (201)
T ss_dssp HHHH-------------------------------HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHH-------------------------------HhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333 333333333333333345555555555555555544333333333
Q ss_pred CCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC-CCCcchHHHHHHHH
Q 004024 273 APVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP-EKNTVSWNAMIAGY 319 (778)
Q Consensus 273 m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~~~~t~~~ll~~~ 319 (778)
+..+|...-...+.++.+.|.. ++...+..+. .++...-...+.++
T Consensus 147 l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444544444555555555543 3333333332 23433333333333
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.78 E-value=0.77 Score=39.31 Aligned_cols=89 Identities=10% Similarity=-0.000 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcC-C-CCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCcee
Q 004024 573 PDAATWGALLGACRLYGKTE---LAEKAAEVIFEME-P-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~---~a~~~~~~~~~l~-p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
|+..+--.+.+++....+.. +|+.+++.++.-+ | ..-.....|+-.|.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 66777677777777776554 4889999888876 5 34566778999999999999999999988762
Q ss_pred EEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCc
Q 004024 648 WLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGF 687 (778)
Q Consensus 648 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy 687 (778)
+|...+.....+-+..+|.+.|+
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 45555666666666778887773
No 240
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=89.17 E-value=25 Score=39.36 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhc---CChhHHH
Q 004024 284 MVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQS---GEITHAR 360 (778)
Q Consensus 284 li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~---g~~~~A~ 360 (778)
....+.-.|+++.|++.+-.....|.+.+...+.-+.-.+- ...++..-......-+..||..|.+. .+..+|.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 45566678999999998887733366666655555444332 11111110011122356778888764 5677777
Q ss_pred HHhhhC
Q 004024 361 NLFDRM 366 (778)
Q Consensus 361 ~~f~~m 366 (778)
+.|--+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 766555
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.84 E-value=43 Score=37.27 Aligned_cols=123 Identities=9% Similarity=0.128 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHH----HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMV----GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 561 (778)
.+.+.|..++......+ ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37789999998886543 22332222 2222333444355666666664332 2333333344444557899999
Q ss_pred HHHHHHhCCCCC-CHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 562 AQNLMKNMPFEP-DAATWG-ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 562 A~~~~~~m~~~p-~~~~~~-~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
|...|+.|+-.+ +..-|. =+..+....|+.+.|...++++.+ + ...|-.|+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999997443 222221 123455678999999999999875 3 25666664
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.44 E-value=10 Score=30.54 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555566666655543 33333233344667899999999999999999999988755 366777887777777776
Q ss_pred CCCCCChhHHH
Q 004024 501 VGIKPDDITMV 511 (778)
Q Consensus 501 ~g~~pd~~t~~ 511 (778)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45545553
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.39 E-value=4 Score=35.07 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 540 IPNSKHYTCMVDLLGRAGRLD---EAQNLMKNM-PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r~g~~~---eA~~~~~~m-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.|+..+---+..++.++...+ +++.++++. ...|. -..+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 355555445555566655443 445554444 11231 23444555666677777777777777777777763
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.90 E-value=48 Score=33.17 Aligned_cols=182 Identities=10% Similarity=0.050 Sum_probs=101.0
Q ss_pred HHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHH----
Q 004024 318 GYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRL---- 393 (778)
Q Consensus 318 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l---- 393 (778)
.....|++-+|.|.+ .++..=|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 344456666665544 45666677777777777775332 1223444554443332
Q ss_pred HHHHhhcCcccCcccccchHHHhcccc-----cHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 394 FIEMKRYGERLNRSPFTSVLSTCANLA-----SLELGKQLHGQLVKVGF--EAGCFVGNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 394 ~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
.+-..+.++++|..+...++..+.... ..+-......+..+.|- ..++.+...+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333334456666555444444333211 22223333444444432 34788899999999999999999998863
Q ss_pred ccCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 467 IVDKDVISWNTMIAGYARH---GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 467 m~~~d~~~~~~li~~~~~~---g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
-...|...+..|+.-+... |...++--+.-+ ++| -+.-.|++..|...|+...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3323566666666555544 544443222221 122 244567888888888776543
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.90 E-value=9.7 Score=30.62 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666666655543 33333233345667899999999999999999999988754 477888888888878877
Q ss_pred CCCCCChhHHH
Q 004024 501 VGIKPDDITMV 511 (778)
Q Consensus 501 ~g~~pd~~t~~ 511 (778)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555554
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.60 E-value=51 Score=33.29 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=99.7
Q ss_pred HHHhccCCh---HHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHH
Q 004024 317 AGYVQTKRM---DMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 317 ~~~~~~~~~---~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l 393 (778)
......|++ -+|.|.+ .++..=|.+.+++++|.+++-.- ...+.+.|+..-|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 344456666 5555443 45666677888888888775331 2224444554443333
Q ss_pred ----HHHHhhcCcccCcccccchHHHhccccc-----HHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 394 ----FIEMKRYGERLNRSPFTSVLSTCANLAS-----LELGKQLHGQLVKVG--FEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 394 ----~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
.+-..+.++++|..+..-++..+..... ..-..+...+-.+.| -.-|+.+...+...|.+.|++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3444445666666655555444443322 122223333444444 34578888899999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 463 AFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 463 ~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
.|---.++.+..+..|+.-+...+...++- ...-.++| -|.-.+++..|...|+...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 984322233356655555544443322221 11112222 34456788888777666544
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.54 E-value=11 Score=43.09 Aligned_cols=50 Identities=16% Similarity=0.010 Sum_probs=33.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 482 YARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
+...|+++-|+++-++... ..|++ .||..|...|.+.|+++.|+-.++++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456777777777777666 56654 36777777777777777777766665
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.51 E-value=27 Score=30.30 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCC-CchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 592 ELAEKAAEVIFEMEPEN-AGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~-~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
.+|..+++.++.-+|.+ -.....|+-.|.+.|++++|.+..+.+.
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444432 2233344444555555555555444443
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.18 E-value=9.6 Score=39.90 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHch----hhcCCCCChHHH
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMN----RDYGVIPNSKHY 546 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 546 (778)
.++..+...|++++|+..+..+.. ..| ++..+..++.++...|+..+|++.|+... ++.|+.|...+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345556667777777777766665 344 55566777777777777777777666543 345777776543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.97 E-value=11 Score=30.44 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.++.-+-.+.+-|++.+..+.|.||++.+|+..|.+.++-+...-.+....|-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 3344444557889999999999999999999999999998876544444555444
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.36 E-value=88 Score=33.14 Aligned_cols=185 Identities=8% Similarity=0.022 Sum_probs=106.0
Q ss_pred CChhHHHHHHHHHhhcC-----cccCcccccchHHHhcccccHHHHHHHHHHHHH-cCCCCchhH--HHHHHHHHHhcCC
Q 004024 385 GYSEDSLRLFIEMKRYG-----ERLNRSPFTSVLSTCANLASLELGKQLHGQLVK-VGFEAGCFV--GNALLVMYCKCGS 456 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~--~~~Li~~y~k~g~ 456 (778)
|++++|++.+..+.+.. ..........++..|...++++...+....+.+ +|..+...+ -+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 45666666655554321 111222344556666677777666555554433 232222211 1222233322332
Q ss_pred HH--HHHHHHHhccC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhc
Q 004024 457 VE--EAYHAFEEIVD---K-------DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-----ITMVGILSACSH 519 (778)
Q Consensus 457 ~~--~A~~~f~~m~~---~-------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-----~t~~~ll~a~~~ 519 (778)
.+ .-..+.+.... . .......|...|...|++.+|.+++.++..+-...+. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333321 1 1123355778888999999999999998753222222 245666778999
Q ss_pred cCcHHHHHHHHHHchhh-cCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 520 TGLVEKGTEYFYSMNRD-YGVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~-~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
.+++.+|..++..+... +...+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998887432 122222 456789999999999999998877655
No 252
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.79 E-value=6.3 Score=34.68 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 588 YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.+|.++|..+|+.++.+...-+..+...+..-.++|+.+.|.+++......+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37888999999988887444456677777888889999999998887776554
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.51 E-value=14 Score=30.00 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+.-+..+-++.+....+.|++....+.|.||.+.+++.-|.++|+..+.+.| +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445566666777777899999999999999999999999999998876544 33556777764
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.50 E-value=21 Score=31.36 Aligned_cols=107 Identities=9% Similarity=0.132 Sum_probs=63.6
Q ss_pred cCCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChh----HHHHHHHH---HhccCcHHHHHHHHHHch
Q 004024 468 VDKDVISWNTMIAGYARHGFG------KDALMLFESMKTVGIKPDDI----TMVGILSA---CSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 468 ~~~d~~~~~~li~~~~~~g~~------~~Al~l~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~ 534 (778)
...|..+|-..+.-.-..|+. ++..++|++.... +.|+.. .|.-+.-- +...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345788888888888888888 8888888888774 566531 11111110 011133444444443332
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+. +. .+ +-+|-....-=.++||++.|.+++.+++.+.|...
T Consensus 88 ~~-------------------hK------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 AN-------------------CK------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HH-------------------CT------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HH-------------------hH------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 21 00 11 55666665555678888888888888888888763
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.81 E-value=6.1 Score=41.47 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh-----CCCccCC
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD-----RGVKKVT 644 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~-----~g~~k~~ 644 (778)
...++.++...|+.+.+...++.++..+|-+-..|..|..+|...|+..+|.+.++..++ -|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344556677888999999999999999999888999999999999999999888777654 3665433
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.32 E-value=91 Score=31.49 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCChhHHHHHHHHHhc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLF----ESMKTVGIKPDDITMVGILSACSH 519 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~----~~m~~~g~~pd~~t~~~ll~a~~~ 519 (778)
+.++..-|.+.+++++|.+++..- ...+.++|+..-|-++- +-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345666788999999999886542 34456677776655544 555567788888777666666655
Q ss_pred cCcHHHH-HHHHHHch---hhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004024 520 TGLVEKG-TEYFYSMN---RDYGVIP--NSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 520 ~g~~~~a-~~~~~~m~---~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~ 593 (778)
...-+-. ..+.+.+. .++|-.| +++....+...|.+.|++.+|+.-+- .+-.+++..+..++..+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 4431111 12222221 1223222 56777788899999999999998873 2334444677666665555443
Q ss_pred HHHHHHHHHhcCCCCCchHHH-HHHHhhhcCCcchHHHHHHHHHh
Q 004024 594 AEKAAEVIFEMEPENAGMYVL-LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~-L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.....|.. ..--|...|+...|.+.+....+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222233322 22246677888888887766654
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.01 E-value=21 Score=31.96 Aligned_cols=112 Identities=4% Similarity=-0.082 Sum_probs=58.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-----CCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhH-HHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVD-----KDV-------ISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDIT-MVG 512 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~-----~d~-------~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t-~~~ 512 (778)
-+..+...|.++.|+-+.+.+.. +++ .+...+..++...|++..|...|++..+.. .-|...+ ..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35566677888888777665422 332 134455677777888888888888764421 2121111 111
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE 572 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~ 572 (778)
+-. ..... ......++.+.---+...|.+.|+.++|+..++.+|.+
T Consensus 106 ~~~----~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN----SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 00000 00112233444344666777888888888888888744
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.67 E-value=22 Score=30.53 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHhccCc---HHHHHHHHHHchhhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 004024 503 IKPDDITMVGILSACSHTGL---VEKGTEYFYSMNRDYGVIP--NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAA 576 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~ 576 (778)
-.|...|--....++.++.. +.+|+.+++.+.+. + | ..+..-.|.-++.|.|++++|.+..+.+ .++|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34555554455556666654 56788888888765 3 4 2344445667788999999999999887 6677643
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.43 E-value=67 Score=30.81 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHhh
Q 004024 221 SLMGGFVKQKRLGDAKWIFDR 241 (778)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~ 241 (778)
+.+...++.|+++..+.+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 344444555565555555554
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.74 E-value=87 Score=37.90 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=25.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
++..+..+|.++-|.++..- ..-|...--.+..++...|++++|.++|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44555556666555544332 1223322223344556666666666666654
No 261
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=67.26 E-value=93 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=8.2
Q ss_pred CCChhhHHHHHHHHHhCCC
Q 004024 89 RRSSVSYNAMISGYLLNGQ 107 (778)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~ 107 (778)
.++..+-..-+..+.+.|.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~ 52 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG 52 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHccCC
Confidence 3444443344444444443
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.16 E-value=62 Score=27.95 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYS 532 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 532 (778)
+||++......+-.+.. +..-.+.-+..+...|+-++-.++...+.. ..+|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555555555444322 222334445555666666666666665422 2455555666666666666666666666666
Q ss_pred chhh
Q 004024 533 MNRD 536 (778)
Q Consensus 533 m~~~ 536 (778)
..++
T Consensus 151 AC~k 154 (172)
T 1wy6_A 151 ACKK 154 (172)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 263
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=67.15 E-value=1.8 Score=28.02 Aligned_cols=13 Identities=54% Similarity=1.308 Sum_probs=10.0
Q ss_pred ccc-CCcccCCCCC
Q 004024 765 HHF-SGGSCSCGDY 777 (778)
Q Consensus 765 h~f-~~g~csc~d~ 777 (778)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 5899999977
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.03 E-value=98 Score=32.12 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=23.3
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP----NSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
..-+...|++.+|.+++..+.+...-.. -.+.|..-+.+|...|++.++...+.
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3344444555555444444443221111 12334444445555555555544443
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.01 E-value=1.2e+02 Score=31.43 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.7
Q ss_pred HcCCChhHHHHHHhh
Q 004024 134 VRNKSLSAARNLFEM 148 (778)
Q Consensus 134 ~~~g~~~~A~~~f~~ 148 (778)
+..|+.+-...+++.
T Consensus 22 a~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 22 SFMGHLPIVKNLLQR 36 (437)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHc
Confidence 344555555555544
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.12 E-value=1.3e+02 Score=36.47 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=83.5
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---C------C-----------
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---K------D----------- 471 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~------d----------- 471 (778)
++..|...+..+.++++.... +.+....-.+..+|..+|++++|.+.|.+... + .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556655555544332 33444444566778899999999999987632 0 0
Q ss_pred ------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh---h--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 472 ------VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD---I--TMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 472 ------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~---~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
..-|.-++..+.++|.++.++++-+..++.. .++. . .|..+..++...|++++|...+-.+... .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 0124556667777888888887777665532 2221 1 3566777777888888887777665321 1
Q ss_pred CChHHHHHHHHHHhhcCCHHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~e 561 (778)
-.......+|..++..|.+++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 123445556666666655443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.06 E-value=42 Score=32.69 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=16.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCc
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
..|+.+.|....+.+++.-|..++
T Consensus 112 ~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 112 VSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hcCCHHHHHHHHHHHHhcCcccCC
Confidence 347777777777777777776654
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.08 E-value=1.3e+02 Score=31.09 Aligned_cols=219 Identities=14% Similarity=0.019 Sum_probs=108.8
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
-++.-|...|++.+|+.++.++.+.=-+.|..++ -..++-.-+.+|...|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~------------------------------llev~lle~~~~~~~~ 153 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNL------------------------------LVEVQLLESKTYHALS 153 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh------------------------------HHHHHHHHHHHHHHhc
Confidence 3667788888888888888888764322332211 1122333455555666
Q ss_pred CHHHHHHHHHhccC------CChhHHHH--H--HHHHH-HcCChHHHHHHHHHHHHCC---CCCC---hhHHHHHHHHHh
Q 004024 456 SVEEAYHAFEEIVD------KDVISWNT--M--IAGYA-RHGFGKDALMLFESMKTVG---IKPD---DITMVGILSACS 518 (778)
Q Consensus 456 ~~~~A~~~f~~m~~------~d~~~~~~--l--i~~~~-~~g~~~~Al~l~~~m~~~g---~~pd---~~t~~~ll~a~~ 518 (778)
++..+...+..... +++..-.. + .-.+. ..+++.+|...|-+..+.= ..|. ...| .++.+..
T Consensus 154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY-lvL~aLl 232 (394)
T 3txn_A 154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY-MLLCKIM 232 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHH
Confidence 66655555544311 12211111 1 11233 4667777766665543210 0121 1122 2233333
Q ss_pred ccCcHHHHHHHHH-HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHHcCChH
Q 004024 519 HTGLVEKGTEYFY-SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAAT---WGALLGACRLYGKTE 592 (778)
Q Consensus 519 ~~g~~~~a~~~~~-~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~---~~~Ll~a~~~~g~~~ 592 (778)
.... .+-..++. .....+ ..|....+..++.+| +.|++.+..++++... +..|+.. |..|....+
T Consensus 233 ~~~r-~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir------ 303 (394)
T 3txn_A 233 LGQS-DDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML------ 303 (394)
T ss_dssp TTCG-GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH------
T ss_pred cCCH-HHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH------
Confidence 2222 22222221 111223 356666666666665 5678888888877762 4556543 222222211
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
+..+.++ ..|-.......++....- ..+++.+..-.|-..|.
T Consensus 304 --~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 --EQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --HHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred --HHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 2222222 357777777777777654 56788888777776553
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.86 E-value=21 Score=30.54 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 560 DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..++.-+-.+.+-|++.+..+-|.||++.+|+..|.+.+|-+...-.+....|-.+. .++.-.+.+-|
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELG 140 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELG 140 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHT
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhC
Confidence 344444445678899999999999999999999999999988765433345554442 23455555666
Q ss_pred Cc
Q 004024 640 VK 641 (778)
Q Consensus 640 ~~ 641 (778)
|.
T Consensus 141 I~ 142 (152)
T 2y69_E 141 IS 142 (152)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.29 E-value=23 Score=34.44 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=74.5
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCC
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGK 590 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~ 590 (778)
...+.|.++++++....-++. -+-|...-..++.+|+-+|+|+.|.+-++.. .+.|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 455678888888877766653 2337888889999999999999999888766 34554 3345555543
Q ss_pred hHHHHHHHHHHHh--cCC---CCCchHH---HHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFE--MEP---ENAGMYV---LLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~--l~p---~~~~~y~---~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+..-+..+. ..| ..+..++ +=++.....|+.++|.+++..+.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 555555554 222 2333333 3344555679999999999998664
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.67 E-value=97 Score=28.63 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=74.2
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNMP-FEPDAA---TWGALLGACRLYGKTELAEKAAEVIFE--MEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m~-~~p~~~---~~~~Ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+.+...|...+ .+-|+. +|--.+..| ..++......+++.+.. +.-.-+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555443 445543 666666654 24446688888888886 456677889999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCC
Q 004024 634 KMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTK 692 (778)
Q Consensus 634 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~ 692 (778)
.=.+++-+ | .+.+.....+...+|.+.+.+.+..
T Consensus 140 ~GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 140 LGAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 76665543 2 3456667778888899888755554
No 272
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.85 E-value=1.2e+02 Score=29.32 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=9.5
Q ss_pred cccccHHHHHHHHHHhcCChh
Q 004024 337 CKNVASWNTMITGYAQSGEIT 357 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~ 357 (778)
.++..+-...+.+..+.|+..
T Consensus 203 d~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHHHHhCCHh
Confidence 344444444444445554433
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=60.96 E-value=30 Score=29.68 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 490 DALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 490 ~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+..+-++.+....+.|++....+.|.||-+.+++.-|.++|+..+.+. .+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455556666667789999999999999999999999999999987653 344566777764
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.37 E-value=2.1e+02 Score=31.73 Aligned_cols=252 Identities=9% Similarity=0.109 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHH
Q 004024 127 NVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEE 203 (778)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~ 203 (778)
+.-+..+++.+++...+.+|.. +..+...-.....+....|+..+|......+- .........++..+.+.|.+..
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 3344556667777777776655 33344444455566666777666666555543 2334556666666665554432
Q ss_pred HHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeeh---
Q 004024 204 ACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFT--- 280 (778)
Q Consensus 204 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~--- 280 (778)
.. +..+ +......|+...|..+...+..........++..+.+-..+ ....... .++...
T Consensus 155 ~~-~~~R------------~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~ 217 (618)
T 1qsa_A 155 LA-YLER------------IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQM 217 (618)
T ss_dssp HH-HHHH------------HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHH
T ss_pred HH-HHHH------------HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHH
Confidence 21 1111 12233344555555555544322222223333333332222 2222211 111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC---Ccc----hHHHHHHHHhccCChHHHHHHHHhhc--cccccHHHHHHHHHH
Q 004024 281 WTAMVSGYVQNGKVDEARMIFDAMPEK---NTV----SWNAMIAGYVQTKRMDMARELFEAMT--CKNVASWNTMITGYA 351 (778)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~----t~~~ll~~~~~~~~~~~a~~i~~~~~--~~~~~~~~~Li~~y~ 351 (778)
...-+.-+.+. +.+.|..+|....+. +.. ....+.......+...++...+.... ..+.....-.+..-.
T Consensus 218 ~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 218 AAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH
Confidence 11112222222 556666666554321 111 22222223333342333333333333 222222222233334
Q ss_pred hcCChhHHHHHhhhCCCCCe-----eehhhHHHHHHhcCChhHHHHHHHHHhh
Q 004024 352 QSGEITHARNLFDRMPQHDC-----ISWAAIIAGYAQSGYSEDSLRLFIEMKR 399 (778)
Q Consensus 352 k~g~~~~A~~~f~~m~~~d~-----~~~~~li~~~~~~g~~~~Al~l~~~m~~ 399 (778)
+.|+.+.|...|+.|..... .-|- ..++.+.|+.++|..+|.++..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~--~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQ--ADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHH--HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHH--HHHHHHcCCHHHHHHHHHHHhc
Confidence 56777777777777765321 1122 2245566777777777777653
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.84 E-value=2.6e+02 Score=32.66 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc
Q 004024 142 ARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML 181 (778)
Q Consensus 142 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 181 (778)
+.++|.+++.|| |..++....+.++.+.+.++|....
T Consensus 221 l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 221 SFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666654443 5556666777777777777777764
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.47 E-value=71 Score=31.92 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=47.0
Q ss_pred CHHHHHHH---HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 558 RLDEAQNL---MKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 558 ~~~eA~~~---~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
......++ |...+++|. ..++.+-++.+.+++|+..|...+++++++.|... ..++|.++.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 33444444 333466775 45778888999999999999999999999998531 234566666
Q ss_pred HHHHhCC
Q 004024 633 LKMRDRG 639 (778)
Q Consensus 633 ~~m~~~g 639 (778)
..-.+.+
T Consensus 251 ~~ce~~~ 257 (325)
T 3mv2_A 251 NKADSMA 257 (325)
T ss_dssp HHHHTSC
T ss_pred HHHhcCC
Confidence 6555443
No 277
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=56.50 E-value=4 Score=35.21 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCcEEEE----ecccccCccchhhHHhhhhcCeEEEEecCCcccccCCcccC
Q 004024 726 GRPIRVM----KNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCS 773 (778)
Q Consensus 726 ~~~i~i~----knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 773 (778)
+-.+||+ ++.+||-+| .|+..-..-+++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4567777 578888888 444444555799999999999873
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.30 E-value=78 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=23.8
Q ss_pred HhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhC
Q 004024 257 YAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304 (778)
Q Consensus 257 y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 304 (778)
+...|++++|..+.+...-||.+.|-+|-.. +.|..+++..-+..+
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4455666666666555555566555555443 344444444444333
No 279
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=55.97 E-value=77 Score=28.30 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 004024 249 SWNTMITGYAQNNYLAEAQRLFEEAPV 275 (778)
Q Consensus 249 ~~~~li~~y~~~g~~~~A~~~f~~m~~ 275 (778)
.---+..+|.+.++.++|..+++.++.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 333455666666777777777766653
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=55.53 E-value=81 Score=25.46 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCC
Q 004024 256 GYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE 306 (778)
Q Consensus 256 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 306 (778)
.+...|++++|..+.+...-||.+.|-+|-.+ +.|..+++..-+..+..
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34456666666666666666666666665543 34555555554444443
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.23 E-value=2e+02 Score=29.84 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHhCCCchHHHHHHhhCCCCCc---chHHHHHHHHHcCCChhHHHHHHhhCCCCC---cchHHHHHHHHHcCCChH
Q 004024 98 MISGYLLNGQLDPARQVFDQMPQRDL---VSWNVMISGYVRNKSLSAARNLFEMMPKRD---VVSWNTMLSGYAQNGYAD 171 (778)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~ 171 (778)
.+..-+..|+++-...+++.-..++. ...+ .+..-++.|+.+-+..+++.-...+ ..-+ +.+...++.|+.+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~ 94 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTN 94 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHH
Confidence 34444566888887777776443322 2222 2334445567766666665433222 1112 2233344555555
Q ss_pred HHHHHHHh
Q 004024 172 AARRIFDR 179 (778)
Q Consensus 172 ~A~~~~~~ 179 (778)
-+..+++.
T Consensus 95 ~v~~Ll~~ 102 (437)
T 1n11_A 95 MVKLLLEN 102 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 54444443
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.55 E-value=49 Score=37.01 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=40.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 004024 377 IIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK--- 453 (778)
Q Consensus 377 li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--- 453 (778)
....+.-.|+++.|++.+.+. ...|.+.+...|..+.-++- +..+...- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 344555677888887776643 34555555555554433332 11111110 01 11 2224567777765
Q ss_pred cCCHHHHHHHHHhccCC
Q 004024 454 CGSVEEAYHAFEEIVDK 470 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~~ 470 (778)
.++..+|.+.|--+..+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 46777888777666433
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.58 E-value=38 Score=35.83 Aligned_cols=97 Identities=8% Similarity=-0.069 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCChhHHH--
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD------KDVISWNTMIAGYARHGFGKDALMLFESMKT---VGIKPDDITMV-- 511 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~---~g~~pd~~t~~-- 511 (778)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..|....++... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456688899999999999999988854 1234567778888889999999988888654 23233322111
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCC
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGV 539 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 539 (778)
.-...+...+++.+|.+.|......+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 1112345678888988888877665443
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.86 E-value=2.1e+02 Score=28.53 Aligned_cols=167 Identities=12% Similarity=0.055 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCChhHHHHHHHHHhc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALML----FESMKTVGIKPDDITMVGILSACSH 519 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l----~~~m~~~g~~pd~~t~~~ll~a~~~ 519 (778)
+.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|.....-++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445667788899999998886542 3445667777666554 4445556788887776666665544
Q ss_pred cCcHH-HHHHHHHHchh---hcCCC--CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 004024 520 TGLVE-KGTEYFYSMNR---DYGVI--PNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLY---GK 590 (778)
Q Consensus 520 ~g~~~-~a~~~~~~m~~---~~~~~--p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~---g~ 590 (778)
-..-+ .=.++.+.+.+ +.|-. -+++....+...|.+.|++.+|+.-+- ..-.-|+..+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCC
Confidence 22111 11222222221 11221 267778888899999999999988664 22111345555555555444 43
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHH-HHHhhhcCCcchHHHHHHHHHh
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLL-SNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L-~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++ +.|..- .--|...|+...|.+++....+
T Consensus 184 ~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 222211 2245677888888888876653
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.94 E-value=1.8e+02 Score=27.56 Aligned_cols=52 Identities=21% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCcc---HhhHHHHHHHhcCChhHHHHHHhh
Q 004024 190 GLLAAYVQNGRIEEACMLFESKANWEVV---SWNSLMGGFVKQKRLGDAKWIFDR 241 (778)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 241 (778)
+.+...++.|+++....+++.....+.. ...+.+...+..|+.+-...+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4455567778888777777665443321 112333444445555555444443
No 286
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.46 E-value=3e+02 Score=28.88 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004024 420 ASLELGKQLHGQLVKV-----GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD 469 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 469 (778)
++++.|.+.+-.+.+. .......+...++..+.+.|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766666542 3455677788899999999999888776665543
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.75 E-value=3.4e+02 Score=29.19 Aligned_cols=177 Identities=10% Similarity=0.045 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-hHHHH-------HHHHHHHcCChHHHHHHHHHHHHCCCCCChh--HH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV-ISWNT-------MIAGYARHGFGKDALMLFESMKTVGIKPDDI--TM 510 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-~~~~~-------li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~--t~ 510 (778)
..+.|.|+..|...+.++.|..+..+..-|.. .+.+- +...++..+++.+|.+.|......- .++.. -|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 56778899999999999999999999866532 22222 3455678899999999988876531 22221 11
Q ss_pred -------HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004024 511 -------VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLG 583 (778)
Q Consensus 511 -------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~ 583 (778)
..+..-+ .|.+-+ ..+|. .++++.....|..|+.++ |.|++++=...+++-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1111111 233221 11121 112222344577777776 6788877666655432 2
Q ss_pred HHHHcCChHHHHHHHHHHHh-----cCCCCCchHHHHHHHhhhcC--CcchHHHHHHHHHhCCC
Q 004024 584 ACRLYGKTELAEKAAEVIFE-----MEPENAGMYVLLSNLYAASG--RWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 584 a~~~~g~~~~a~~~~~~~~~-----l~p~~~~~y~~L~~~y~~~g--~~~~a~~~~~~m~~~g~ 640 (778)
.+...|++...+++-..+.+ +...... +.+.++..+.| .-++|..+...|-..|.
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~Ysr--IsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKK--ISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSE--ECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33455666555544433322 2211111 22333333332 24678888777776664
No 288
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=42.65 E-value=6.4 Score=25.68 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.1
Q ss_pred ecccccCccchhh
Q 004024 733 KNLRVCEDCHNAI 745 (778)
Q Consensus 733 knlr~c~dch~~~ 745 (778)
-|-|||.+||--+
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 3789999998543
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.66 E-value=1.2e+02 Score=29.60 Aligned_cols=15 Identities=0% Similarity=0.164 Sum_probs=7.3
Q ss_pred hcCCCHHHHHHHHhh
Q 004024 258 AQNNYLAEAQRLFEE 272 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~ 272 (778)
+..|..+-+..+++.
T Consensus 103 ~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555555444
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.34 E-value=3e+02 Score=27.96 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCh
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGF--GKDALMLFESMKTVGIKPDD 507 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~pd~ 507 (778)
.+.++.-|...|++++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 4677888888899999999999887763 2334445555444332 34577778878777655443
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.76 E-value=2e+02 Score=25.65 Aligned_cols=148 Identities=9% Similarity=0.069 Sum_probs=63.6
Q ss_pred HHhcCChhHHHHHhhhCC-C---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccc--cchHHHhcccccHH
Q 004024 350 YAQSGEITHARNLFDRMP-Q---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPF--TSVLSTCANLASLE 423 (778)
Q Consensus 350 y~k~g~~~~A~~~f~~m~-~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~ 423 (778)
.+..|+.+....++..-. . .|..-++.+..+ ++.|+. ++++.+.+.|..|+.... .+.+...+..|..+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345666666666665443 2 222233333333 344443 333444445555543321 22333333445554
Q ss_pred HHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhc-cC---CChhHHHHHHHHHHHcCC-hHHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCF--VGNALLVMYCKCGSVEEAYHAFEEI-VD---KDVISWNTMIAGYARHGF-GKDALMLFE 496 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m-~~---~d~~~~~~li~~~~~~g~-~~~Al~l~~ 496 (778)
..+.+... .+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.+..+.. .|+ ...-.++.+
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~ 162 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHH
Confidence 44433322 22111110 0111233344566666666666554 22 23333444443332 333 333355556
Q ss_pred HHHHCCCCCC
Q 004024 497 SMKTVGIKPD 506 (778)
Q Consensus 497 ~m~~~g~~pd 506 (778)
.+.+.|..|+
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6666666655
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.58 E-value=2.3e+02 Score=25.86 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=6.9
Q ss_pred HhcCChhHHHHHhhh
Q 004024 351 AQSGEITHARNLFDR 365 (778)
Q Consensus 351 ~k~g~~~~A~~~f~~ 365 (778)
++.|+.+-+..+++.
T Consensus 117 ~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHhc
Confidence 344555444444443
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.55 E-value=1.4e+02 Score=31.36 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHH----
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT---- 547 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~---- 547 (778)
++..+..-|...|+.++|.+.|.++...-..+.. ..+..++..|...+++..+..+...+.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888999999999999999999986545543 3577888899999999999999998765433333332211
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m 569 (778)
+-.-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222344578899988877665
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.38 E-value=2.7e+02 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=13.0
Q ss_pred chHHHhcccccHHHHHHHHHHHHHc
Q 004024 411 SVLSTCANLASLELGKQLHGQLVKV 435 (778)
Q Consensus 411 ~ll~a~~~~~~~~~a~~i~~~~~~~ 435 (778)
+.+......|..+..+.+.+.-.+.
T Consensus 212 t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 212 SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 4455556666766666665544433
No 295
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.97 E-value=38 Score=18.88 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 004024 668 KDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 668 ~~~i~~~l~~l~~~~~~ 684 (778)
.++.|.+|+.|.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56888888888877764
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.52 E-value=1.3e+02 Score=25.51 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGF--GKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~pd 506 (778)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888989999999999999987653 2344445555555432 3567778888877775443
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.97 E-value=2.8e+02 Score=27.74 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=8.0
Q ss_pred HHhcCCHHHHHHHHHh
Q 004024 451 YCKCGSVEEAYHAFEE 466 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~ 466 (778)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555555543
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.63 E-value=2.7e+02 Score=25.55 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 559 LDEAQNLMKNMPFEPDAA-------TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p~~~-------~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
++.|+.+++.+.-+-|.. +=-..+..|...|.+++|+++++++++-.|.+...-..|.++-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 566777777764333311 1223457799999999999999999988877755555554443
No 299
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=31.62 E-value=5.7 Score=30.44 Aligned_cols=14 Identities=57% Similarity=1.156 Sum_probs=11.1
Q ss_pred ecccccCccchhhH
Q 004024 733 KNLRVCEDCHNAIK 746 (778)
Q Consensus 733 knlr~c~dch~~~k 746 (778)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45699999998763
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.18 E-value=3.6e+02 Score=25.86 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHH
Q 004024 254 ITGYAQNNYLAEAQRLFEEAPVKD---VFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDM 327 (778)
Q Consensus 254 i~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~ 327 (778)
+...+..|+.+-+..+++.-..++ ..-++.| ...+..|+.+-+..+++.-... |...+.+.+...+..|+.+-
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~ 144 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence 334455666666666665544332 2223333 3334566666555555543222 32222334444555666665
Q ss_pred HHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHHHhhhC---CCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcc
Q 004024 328 ARELFEAMT-CKNVASWNTMITGYAQSGEITHARNLFDRM---PQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGER 403 (778)
Q Consensus 328 a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 403 (778)
.+.+++.-. ..+.....+.+...++.|..+-+.-+++.- ..+|..-++..+..-++.|+. ++.+.+.+.|..
T Consensus 145 v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad 220 (285)
T 3kea_A 145 VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDIN 220 (285)
T ss_dssp HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBC
T ss_pred HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCC
Confidence 555554433 112213344445555666666665555432 122333344323333334432 333444455655
Q ss_pred cCccc
Q 004024 404 LNRSP 408 (778)
Q Consensus 404 pd~~t 408 (778)
|+...
T Consensus 221 ~~~~~ 225 (285)
T 3kea_A 221 IYSAN 225 (285)
T ss_dssp STTTT
T ss_pred CCCCC
Confidence 55443
No 301
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=30.78 E-value=16 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.0
Q ss_pred eEEEEecCCcccccCCcccC
Q 004024 754 RLIILRDNNRFHHFSGGSCS 773 (778)
Q Consensus 754 r~i~~rd~~rfh~f~~g~cs 773 (778)
.-|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45778999999999999854
No 302
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=29.03 E-value=11 Score=21.10 Aligned_cols=13 Identities=46% Similarity=1.480 Sum_probs=8.7
Q ss_pred ccCCccc--CCCCCC
Q 004024 766 HFSGGSC--SCGDYW 778 (778)
Q Consensus 766 ~f~~g~c--sc~d~w 778 (778)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4777877 366655
No 303
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=28.34 E-value=46 Score=26.10 Aligned_cols=28 Identities=36% Similarity=0.339 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHhCCcccCCCcc
Q 004024 667 EKDRIYAYLEELEFKLKQDGFVYSTKLV 694 (778)
Q Consensus 667 ~~~~i~~~l~~l~~~~~~~gy~p~~~~~ 694 (778)
...+|...+++-..++|..||.||.-.+
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3567888889999999999999997654
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.20 E-value=1.4e+02 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=9.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 004024 284 MVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 284 li~~~~~~g~~~~A~~l~~~m~ 305 (778)
++.-|...|+.++|...++++.
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 3444444444444444444443
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.61 E-value=3.5e+02 Score=24.64 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCcc--HhhHHHHHHHhcCChhHHHHHHhhCCCCChhHH--HHHHHHHhcCCCHHH
Q 004024 190 GLLAAYVQNGRIEEACMLFESKANWEVV--SWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSW--NTMITGYAQNNYLAE 265 (778)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~--~~li~~y~~~g~~~~ 265 (778)
+.+...+..|+.+-...+++.....+.. ...+.+...+..|+.+-...+++.-...+.... .+.+...+..|..+-
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 92 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q ss_pred HHHHHhhC-CCCCeehH--HHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccCChHHHHHHHHhhc--cc
Q 004024 266 AQRLFEEA-PVKDVFTW--TAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTKRMDMARELFEAMT--CK 338 (778)
Q Consensus 266 A~~~f~~m-~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~ 338 (778)
+..+++.- ...+.... .+.+...+..|+.+-...+++.-... ....-.+.+...+..|+.+..+.+++.-. ..
T Consensus 93 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172 (237)
T ss_dssp HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC
T ss_pred HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Q ss_pred cccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe--eehhhHHHHHHhcCChhHHHHHHHHHhhc
Q 004024 339 NVASWNTMITGYAQSGEITHARNLFDRMPQHDC--ISWAAIIAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 339 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~--~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
-.....+-+...++.|+.+-+.-+++.-...+. ..-.+-+...+..|+...++++.+.+++.
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.30 E-value=4.6e+02 Score=25.88 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGF--GKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~pd 506 (778)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 3567888888899999999999887662 2334444445444332 3456677777776665443
No 307
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.74 E-value=1.4e+02 Score=29.71 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=43.3
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 566 MKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 566 ~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
|...+++|. ..++.+-++.+.+++|+..|-..+++++++.|... ..++|.++...-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 333366665 44778888999999999999999999999987531 1244666666665544
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.94 E-value=3.8e+02 Score=24.42 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHH
Q 004024 453 KCGSVEEAYHAFE 465 (778)
Q Consensus 453 k~g~~~~A~~~f~ 465 (778)
+.|+.+-+..+++
T Consensus 159 ~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 159 ENNSLSMVQLLLQ 171 (241)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444433
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.59 E-value=1.6e+02 Score=26.99 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=39.2
Q ss_pred hhhHHHHHHh---cCChhHHHHHHHHHhhcCcccCcccccchHHHhcccc-----cHHHHHHHHHHHHHcCC
Q 004024 374 WAAIIAGYAQ---SGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA-----SLELGKQLHGQLVKVGF 437 (778)
Q Consensus 374 ~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~ 437 (778)
.--+|+++.+ ..+++.|+-.+-+|.+.| .|..+.=..++.|....| .+..+...++...+.|+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345666654 588999999999999999 666554444555544433 24444444444555554
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.30 E-value=1.3e+02 Score=26.45 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGF--GKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~pd 506 (778)
.+.++.-|...|++++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888989999999999999987653 2344445555554332 3557778888877765443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.82 E-value=1.1e+02 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 004024 283 AMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 283 ~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
.++.-|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444444444444444444443
No 312
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.78 E-value=9.2e+02 Score=28.12 Aligned_cols=85 Identities=14% Similarity=-0.026 Sum_probs=43.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHH---HHHHHHhcc
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVD--KDVI-SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMV---GILSACSHT 520 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~--~d~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~---~ll~a~~~~ 520 (778)
.-.|.-.|+-+....++..+.+ .+.+ -.-++.-|+..-|+.+.+..+.+.+... +|. +-|. ++..||+..
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 3334455666655555554422 2211 1222233344567777777777776652 232 2333 233456666
Q ss_pred CcHHHHHHHHHHchh
Q 004024 521 GLVEKGTEYFYSMNR 535 (778)
Q Consensus 521 g~~~~a~~~~~~m~~ 535 (778)
|+.....+++..+..
T Consensus 574 Gn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 574 GNNSAVKRLLHVAVS 588 (963)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 776666667766654
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.55 E-value=3.2e+02 Score=23.89 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNMP-FEPDAA---TWGALLGACRLYGKTELAEKAAEVIFEM--EPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m~-~~p~~~---~~~~Ll~a~~~~g~~~~a~~~~~~~~~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+.+...|...+ .+-|+. +|-..+..| +....+++.+... .-.-+..|...+..+...|++++|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555442 445543 454444332 2367778777763 45567788999999999999999999998
Q ss_pred HHHhCCC
Q 004024 634 KMRDRGV 640 (778)
Q Consensus 634 ~m~~~g~ 640 (778)
.=.+++-
T Consensus 126 ~Gi~~~A 132 (152)
T 4a1g_A 126 RGIQNQA 132 (152)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7666544
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.05 E-value=2.4e+02 Score=25.99 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHH
Q 004024 424 LGKQLHGQLVKVGFEA-GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTM 478 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l 478 (778)
....++..|...|+.. -...|.+....+...|++.+|.++|+.-.+.......-|
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 4444555554444432 344566666667777777777777776655444433333
No 315
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=21.77 E-value=96 Score=28.38 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhCCcccCCCc------cccc--------------cchhhHhhhhhhhhHHHHHHHhhh
Q 004024 662 DTLHPEKDRIYAYLEELEFKLKQDGFVYSTKL------VLHD--------------VGEEEKEHMLRYHSEKLAVAYGIL 721 (778)
Q Consensus 662 d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~------~~~~--------------~~~~~k~~~l~~hse~la~~~gl~ 721 (778)
|..|....++-....-|+..+.+.|+++.... .-+. ++++-|+.+|.--+.-++= +|+
T Consensus 10 ~~~~~~~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aAi~e-lG~- 87 (207)
T 3a8g_A 10 ENAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQ-YGY- 87 (207)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHH-TTC-
T ss_pred CCccccccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHHHHH-cCC-
Confidence 33445556677777788899999999876431 1111 3455677777766666664 675
Q ss_pred CCCCCCcEEEEe------cccccCccc
Q 004024 722 SIPAGRPIRVMK------NLRVCEDCH 742 (778)
Q Consensus 722 ~~~~~~~i~i~k------nlr~c~dch 742 (778)
..|+|..|+|+. |+-||.=|-
T Consensus 88 ~g~~g~~l~vVENTp~vHn~vVCTLCS 114 (207)
T 3a8g_A 88 LGPQGEYIVAVEDTPTLKNVIVCSLAA 114 (207)
T ss_dssp CBTTBSEEEEEECBTTEEEEEECTTSC
T ss_pred CCCCCCeEEEEecCCCcEEEEEeeccc
Confidence 468999999987 688887764
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.62 E-value=4.1e+02 Score=23.32 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHhcCChhHHHHHhhhC-CC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 350 YAQSGEITHARNLFDRM-PQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 350 y~k~g~~~~A~~~f~~m-~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
.++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..|+.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 33445555555555443 11 22223344443332222222234445555555555543
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.26 E-value=2.2e+02 Score=24.95 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
|..-...+...|++++|.++|+.-++.+-+|
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3333444445555555555555555555554
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.11 E-value=3.5e+02 Score=23.93 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCC-CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 559 LDEAQNLMKNMP-FEPDAA---TWGALLGACRLYGKTELAEKAAEVIFE--MEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 559 ~~eA~~~~~~m~-~~p~~~---~~~~Ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
++.+...|...+ .+-|+. +|--++..| ++ ...+|+.+.. +.-.-+..|...+..|...|++.+|.+++
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444442 445543 565555543 33 5667777775 44566778999999999999999999999
Q ss_pred HHHHhCCC
Q 004024 633 LKMRDRGV 640 (778)
Q Consensus 633 ~~m~~~g~ 640 (778)
+.-.+++.
T Consensus 120 ~~Gi~~~A 127 (164)
T 2wvi_A 120 QEGIQQKA 127 (164)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 87776654
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.94 E-value=1.6e+02 Score=23.38 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHhcccCCcchHHHHHHHHHh-c-CCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHH
Q 004024 176 IFDRMLEKNEISWNGLLAAYVQ-N-GRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWI 238 (778)
Q Consensus 176 ~~~~m~~~d~~t~~~ll~~~~~-~-g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (778)
+++.+.+.++.|-...=..-.. . ...+.|.+++..+.+.|...|..+++++...|+..-|..+
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.84 E-value=4.7e+02 Score=23.62 Aligned_cols=178 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhh---hCCCCCeeehhhHHHHHHhcCChh
Q 004024 315 MIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFD---RMPQHDCISWAAIIAGYAQSGYSE 388 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~---~m~~~d~~~~~~li~~~~~~g~~~ 388 (778)
.+...+..|+++..+.++..-. ........+.+...++.|+.+-...+++ ....+|...++.+..+.....
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--- 85 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX--- 85 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC---
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH---
Q ss_pred HHHHHHHHHhhcCcccCccccc--chHHHhcccccHHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHH
Q 004024 389 DSLRLFIEMKRYGERLNRSPFT--SVLSTCANLASLELGKQLHGQLVKVGFEAGCFV--GNALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 389 ~Al~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~Li~~y~k~g~~~~A~~~f 464 (778)
.++++.+.+.|..++..... +.+...+..+..+ +...+.+.|..++... ..+.+...++.|+.+-+..++
T Consensus 86 --~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 86 --DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Q ss_pred HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 465 EEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 465 ~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
+.-.. +|..-++.+-.+..... .++.+.+.+.|..|+
T Consensus 160 ~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 160 FYKASTNIQDTEGNTPLHLACDEER-----VEEAKFLVTQGASIY 199 (231)
T ss_dssp HTTCCSCCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred hcCCCccccCCCCCCHHHHHHHCCC-----HHHHHHHHHCCCCCC
No 321
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.51 E-value=4.7e+02 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHHHHhhcCcccCccc---ccchHHHhcccccHHHHHHHHHHHHHcCCCC
Q 004024 393 LFIEMKRYGERLNRSP---FTSVLSTCANLASLELGKQLHGQLVKVGFEA 439 (778)
Q Consensus 393 l~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 439 (778)
+++.+.+.|..++... -.+.+...+..|..+..+ .+.+.|..+
T Consensus 131 ~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~ 176 (241)
T 1k1a_A 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ----LLLQHGANV 176 (241)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCT
T ss_pred HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH----HHHHcCCCC
Confidence 3444445565554432 234444444556554433 334445443
Done!