Query 004026
Match_columns 778
No_of_seqs 376 out of 1756
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 6.6E-89 1.4E-93 698.6 22.4 229 279-508 1-229 (229)
2 PF01852 START: START domain; 99.7 1.3E-17 2.8E-22 168.2 12.7 202 284-508 1-205 (206)
3 smart00234 START in StAR and p 99.7 3.4E-16 7.5E-21 158.2 18.3 202 285-509 2-206 (206)
4 KOG0483 Transcription factor H 99.7 8.4E-17 1.8E-21 163.1 6.3 81 79-159 53-133 (198)
5 KOG0842 Transcription factor t 99.6 2.6E-16 5.6E-21 168.0 8.7 67 73-139 150-216 (307)
6 KOG0488 Transcription factor B 99.6 2.2E-16 4.8E-21 170.6 6.1 67 71-137 167-233 (309)
7 KOG0485 Transcription factor N 99.6 6E-16 1.3E-20 155.4 8.5 65 73-137 101-165 (268)
8 KOG0494 Transcription factor C 99.6 8.5E-16 1.9E-20 157.6 5.9 74 76-149 140-214 (332)
9 KOG0484 Transcription factor P 99.6 3.5E-16 7.6E-21 141.0 2.7 64 73-136 14-77 (125)
10 KOG0489 Transcription factor z 99.6 5.9E-16 1.3E-20 164.1 3.6 65 74-138 157-221 (261)
11 KOG0843 Transcription factor E 99.6 9E-16 2E-20 150.7 4.5 64 75-138 101-164 (197)
12 KOG0850 Transcription factor D 99.6 1.2E-15 2.7E-20 154.9 5.0 73 69-141 115-187 (245)
13 KOG0487 Transcription factor A 99.6 3.3E-15 7.2E-20 159.7 7.0 65 73-137 232-296 (308)
14 KOG0492 Transcription factor M 99.5 1.3E-14 2.7E-19 145.2 6.2 65 72-136 140-204 (246)
15 KOG0848 Transcription factor C 99.5 4.5E-15 9.7E-20 153.2 3.0 68 72-139 195-262 (317)
16 KOG2251 Homeobox transcription 99.5 1.9E-14 4.2E-19 145.7 4.8 68 71-138 32-99 (228)
17 PF00046 Homeobox: Homeobox do 99.5 4.2E-14 9E-19 115.7 4.3 57 77-133 1-57 (57)
18 KOG0493 Transcription factor E 99.4 4.7E-13 1E-17 137.7 7.8 59 77-135 247-305 (342)
19 KOG0844 Transcription factor E 99.3 6.5E-13 1.4E-17 139.1 3.9 66 71-136 176-241 (408)
20 TIGR01565 homeo_ZF_HD homeobox 99.3 3.1E-12 6.7E-17 105.9 5.0 53 76-128 1-57 (58)
21 smart00389 HOX Homeodomain. DN 99.3 2.5E-12 5.4E-17 104.3 3.8 56 77-132 1-56 (56)
22 COG5576 Homeodomain-containing 99.3 2.5E-12 5.4E-17 126.5 4.3 66 75-140 50-115 (156)
23 cd00177 START Lipid-binding ST 99.3 6.5E-11 1.4E-15 116.9 14.3 186 288-505 2-190 (193)
24 cd00086 homeodomain Homeodomai 99.3 3.6E-12 7.7E-17 104.1 4.3 57 78-134 2-58 (59)
25 KOG0491 Transcription factor B 99.3 8.1E-13 1.7E-17 128.2 0.4 65 75-139 99-163 (194)
26 KOG0486 Transcription factor P 99.2 5.4E-12 1.2E-16 133.4 5.5 62 74-135 110-171 (351)
27 KOG4577 Transcription factor L 99.2 1.9E-11 4E-16 127.6 6.0 78 75-152 166-243 (383)
28 KOG0847 Transcription factor, 99.2 8.7E-12 1.9E-16 125.8 2.5 65 73-137 164-228 (288)
29 KOG3802 Transcription factor O 99.2 2E-11 4.3E-16 133.3 4.6 62 74-135 292-353 (398)
30 cd08871 START_STARD10-like Lip 99.1 2.9E-09 6.3E-14 110.2 17.8 201 287-520 9-213 (222)
31 cd08867 START_STARD4_5_6-like 99.0 7.6E-09 1.7E-13 105.9 16.6 193 283-507 4-205 (206)
32 KOG0490 Transcription factor, 99.0 2.7E-10 5.9E-15 117.3 4.0 64 73-136 57-120 (235)
33 cd08868 START_STARD1_3_like Ch 99.0 1.3E-08 2.8E-13 104.3 15.9 194 282-510 6-208 (208)
34 cd08904 START_STARD6-like Lipi 98.8 4.7E-08 1E-12 100.6 14.6 171 283-478 4-178 (204)
35 KOG0849 Transcription factor P 98.8 4.7E-09 1E-13 116.2 4.3 65 72-136 172-236 (354)
36 cd08903 START_STARD5-like Lipi 98.7 6.2E-07 1.3E-11 92.4 15.8 192 283-507 4-205 (208)
37 cd08869 START_RhoGAP C-termina 98.6 4.8E-07 1E-11 92.4 12.3 167 287-482 4-173 (197)
38 cd08909 START_STARD13-like C-t 98.6 8.1E-07 1.8E-11 91.6 13.5 129 335-478 48-178 (205)
39 PLN00188 enhanced disease resi 98.5 7.9E-07 1.7E-11 104.4 13.5 129 339-480 227-365 (719)
40 KOG1168 Transcription factor A 98.5 6.2E-08 1.4E-12 101.7 3.6 62 74-135 307-368 (385)
41 cd08905 START_STARD1-like Chol 98.5 1.3E-06 2.8E-11 90.2 12.9 193 281-508 5-207 (209)
42 cd08906 START_STARD3-like Chol 98.4 7.6E-06 1.6E-10 84.6 15.6 195 281-507 5-206 (209)
43 cd08902 START_STARD4-like Lipi 98.4 7.9E-06 1.7E-10 83.7 14.4 191 283-506 4-200 (202)
44 KOG0775 Transcription factor S 98.2 9.6E-07 2.1E-11 92.7 3.8 50 83-132 183-232 (304)
45 cd08910 START_STARD2-like Lipi 98.1 2.8E-05 6E-10 80.2 13.1 183 294-509 17-206 (207)
46 cd08877 START_2 Uncharacterize 98.0 9.2E-05 2E-09 76.4 14.1 200 282-508 3-213 (215)
47 cd08908 START_STARD12-like C-t 98.0 0.00011 2.4E-09 76.0 13.5 163 285-476 10-175 (204)
48 cd08876 START_1 Uncharacterize 97.9 0.00015 3.2E-09 73.1 12.8 153 339-507 41-194 (195)
49 cd08874 START_STARD9-like C-te 97.9 0.00011 2.4E-09 75.9 11.4 129 334-481 45-181 (205)
50 cd08907 START_STARD8-like C-te 97.7 0.00013 2.8E-09 75.1 9.6 167 286-479 11-179 (205)
51 PF05920 Homeobox_KN: Homeobox 97.7 1.4E-05 3.1E-10 61.7 1.2 34 97-130 7-40 (40)
52 KOG0774 Transcription factor P 97.7 2.7E-05 5.9E-10 81.3 3.0 59 77-135 189-250 (334)
53 cd08870 START_STARD2_7-like Li 97.6 0.0013 2.9E-08 67.7 14.5 154 338-509 49-208 (209)
54 cd08872 START_STARD11-like Cer 97.6 0.0019 4.2E-08 68.1 15.8 192 287-507 9-224 (235)
55 KOG0490 Transcription factor, 97.5 7E-05 1.5E-09 77.2 4.0 64 73-136 150-213 (235)
56 KOG2252 CCAAT displacement pro 97.4 0.00013 2.8E-09 83.5 4.4 59 74-132 418-476 (558)
57 cd08911 START_STARD7-like Lipi 97.4 0.0022 4.7E-08 66.2 13.1 152 340-509 46-206 (207)
58 cd08873 START_STARD14_15-like 97.1 0.0037 8E-08 66.1 11.3 119 344-474 82-203 (235)
59 cd08871 START_STARD10-like Lip 97.1 0.025 5.4E-07 58.8 17.3 175 553-775 21-201 (222)
60 cd08913 START_STARD14-like Lip 96.6 0.021 4.5E-07 60.7 11.9 128 342-483 84-215 (240)
61 KOG1146 Homeobox protein [Gene 96.6 0.0023 5E-08 79.6 5.1 61 76-136 903-963 (1406)
62 cd08914 START_STARD15-like Lip 96.5 0.017 3.7E-07 61.1 10.6 129 340-483 79-211 (236)
63 cd08869 START_RhoGAP C-termina 96.5 0.18 3.9E-06 51.7 17.7 174 553-776 17-196 (197)
64 cd08907 START_STARD8-like C-te 96.4 0.2 4.4E-06 52.0 17.3 174 552-775 24-203 (205)
65 cd08904 START_STARD6-like Lipi 96.3 0.18 4E-06 52.3 16.3 175 553-774 20-203 (204)
66 cd08874 START_STARD9-like C-te 95.4 0.18 3.9E-06 52.4 12.1 130 552-705 19-157 (205)
67 cd08876 START_1 Uncharacterize 95.3 1 2.2E-05 45.3 17.1 59 552-619 14-72 (195)
68 KOG0773 Transcription factor M 94.8 0.025 5.5E-07 62.6 4.0 62 76-137 239-303 (342)
69 cd08877 START_2 Uncharacterize 94.6 1.7 3.7E-05 44.9 16.7 117 541-674 10-129 (215)
70 cd00177 START Lipid-binding ST 94.6 1.6 3.5E-05 42.9 15.9 131 555-705 15-149 (193)
71 cd08868 START_STARD1_3_like Ch 94.4 1.8 4E-05 44.4 16.4 132 554-706 23-161 (208)
72 cd08867 START_STARD4_5_6-like 94.1 5.1 0.00011 41.1 18.7 145 535-705 8-160 (206)
73 cd08873 START_STARD14_15-like 94.0 0.5 1.1E-05 50.2 11.3 66 553-631 53-118 (235)
74 cd08906 START_STARD3-like Chol 93.8 4.3 9.4E-05 42.2 17.8 144 538-704 10-160 (209)
75 cd08903 START_STARD5-like Lipi 93.8 1.9 4.1E-05 44.7 15.0 178 553-775 20-206 (208)
76 cd08911 START_STARD7-like Lipi 93.7 1.8 4E-05 44.7 14.6 180 553-775 19-205 (207)
77 cd08908 START_STARD12-like C-t 93.5 3.5 7.6E-05 43.0 16.3 172 556-775 28-202 (204)
78 PF11569 Homez: Homeodomain le 93.5 0.034 7.3E-07 46.2 1.2 42 87-128 9-50 (56)
79 cd08909 START_STARD13-like C-t 93.4 3.3 7.2E-05 43.2 15.9 174 555-775 27-203 (205)
80 cd08914 START_STARD15-like Lip 92.8 0.75 1.6E-05 48.9 10.3 57 552-619 53-109 (236)
81 cd08870 START_STARD2_7-like Li 92.7 1.2 2.7E-05 45.9 11.6 106 555-674 22-133 (209)
82 smart00234 START in StAR and p 92.5 2.2 4.8E-05 43.1 13.1 135 554-706 18-158 (206)
83 cd08902 START_STARD4-like Lipi 91.0 4.4 9.6E-05 42.2 13.2 61 552-621 20-80 (202)
84 cd08875 START_ArGLABRA2_like C 90.9 7 0.00015 41.6 14.8 187 533-751 3-204 (229)
85 KOG4005 Transcription factor X 90.5 1.4 3E-05 46.5 9.0 61 124-198 81-143 (292)
86 PF01852 START: START domain; 90.4 7.2 0.00016 39.3 14.2 150 537-705 2-157 (206)
87 PRK09413 IS2 repressor TnpA; R 90.3 1.1 2.4E-05 42.6 7.5 41 80-125 10-51 (121)
88 KOG4196 bZIP transcription fac 89.9 2.3 5.1E-05 41.1 9.3 85 81-199 22-107 (135)
89 cd08864 SRPBCC_DUF3074 DUF3074 87.2 3 6.4E-05 43.6 8.9 103 374-482 76-184 (208)
90 cd05018 CoxG Carbon monoxide d 86.8 6.6 0.00014 36.6 10.4 119 344-488 6-124 (144)
91 cd08913 START_STARD14-like Lip 86.6 4.7 0.0001 43.1 10.2 57 552-619 56-112 (240)
92 cd08910 START_STARD2-like Lipi 86.2 1.3 2.7E-05 46.0 5.5 93 552-661 22-116 (207)
93 cd08860 TcmN_ARO-CYC_like N-te 85.5 11 0.00023 36.9 11.4 140 343-509 5-144 (146)
94 KOG3623 Homeobox transcription 85.2 0.59 1.3E-05 55.8 2.8 47 88-134 568-614 (1007)
95 cd08866 SRPBCC_11 Ligand-bindi 85.2 12 0.00026 35.2 11.3 133 342-508 2-143 (144)
96 KOG2761 START domain-containin 83.1 6.1 0.00013 41.6 8.8 112 348-472 63-183 (219)
97 PF04218 CENP-B_N: CENP-B N-te 82.6 1.6 3.5E-05 35.7 3.5 46 77-127 1-46 (53)
98 cd07819 SRPBCC_2 Ligand-bindin 81.4 25 0.00055 32.4 11.8 132 343-506 6-139 (140)
99 cd07813 COQ10p_like Coenzyme Q 80.4 10 0.00022 35.7 8.7 135 343-509 3-137 (138)
100 PRK15422 septal ring assembly 79.6 5.8 0.00013 35.3 6.1 61 132-206 12-76 (79)
101 PF06005 DUF904: Protein of un 79.0 5.2 0.00011 35.1 5.7 51 134-205 14-68 (72)
102 cd08861 OtcD1_ARO-CYC_like N-t 78.6 16 0.00034 34.3 9.5 27 344-370 4-30 (142)
103 PF02183 HALZ: Homeobox associ 78.0 3.8 8.2E-05 32.8 4.1 25 135-159 2-26 (45)
104 cd08905 START_STARD1-like Chol 77.5 93 0.002 32.2 16.7 77 533-620 5-82 (209)
105 cd07817 SRPBCC_8 Ligand-bindin 75.4 55 0.0012 30.2 12.1 134 344-508 5-138 (139)
106 cd08872 START_STARD11-like Cer 74.2 9.4 0.0002 40.5 7.2 63 549-619 20-84 (235)
107 TIGR00219 mreC rod shape-deter 73.5 4.3 9.3E-05 44.3 4.6 42 139-197 67-108 (283)
108 cd07821 PYR_PYL_RCAR_like Pyra 73.4 62 0.0014 29.5 11.8 135 344-508 6-140 (140)
109 KOG1146 Homeobox protein [Gene 73.3 2.7 5.8E-05 53.6 3.3 95 77-184 445-540 (1406)
110 PF10604 Polyketide_cyc2: Poly 72.6 77 0.0017 28.9 13.4 35 344-382 7-41 (139)
111 COG3074 Uncharacterized protei 71.1 13 0.00028 32.5 5.8 60 133-206 13-76 (79)
112 PRK10724 hypothetical protein; 70.3 66 0.0014 32.1 11.8 137 342-510 18-154 (158)
113 cd08865 SRPBCC_10 Ligand-bindi 69.2 75 0.0016 28.9 11.3 136 344-508 4-139 (140)
114 PRK13922 rod shape-determining 68.1 6.7 0.00015 42.2 4.6 41 139-197 70-110 (276)
115 KOG0971 Microtubule-associated 66.8 16 0.00034 45.3 7.6 57 142-204 336-392 (1243)
116 cd07818 SRPBCC_1 Ligand-bindin 66.7 49 0.0011 31.3 9.8 51 457-508 99-149 (150)
117 PF12711 Kinesin-relat_1: Kine 65.5 14 0.00031 33.6 5.3 46 143-203 22-67 (86)
118 PF01527 HTH_Tnp_1: Transposas 63.6 1.6 3.4E-05 37.3 -1.0 43 78-124 2-44 (76)
119 KOG4343 bZIP transcription fac 61.1 18 0.00038 42.6 6.3 20 181-200 317-336 (655)
120 PLN00188 enhanced disease resi 59.9 30 0.00064 42.4 8.2 157 552-744 195-361 (719)
121 TIGR03752 conj_TIGR03752 integ 55.9 17 0.00037 42.3 5.2 91 82-202 41-131 (472)
122 PF04880 NUDE_C: NUDE protein, 53.3 13 0.00028 37.7 3.3 20 181-200 25-44 (166)
123 smart00338 BRLZ basic region l 50.3 61 0.0013 27.3 6.5 39 137-196 25-63 (65)
124 COG4026 Uncharacterized protei 47.5 41 0.00088 35.7 5.8 49 130-199 141-189 (290)
125 PF02183 HALZ: Homeobox associ 47.5 45 0.00098 26.7 4.8 40 142-202 2-41 (45)
126 PF06785 UPF0242: Uncharacteri 47.2 30 0.00066 38.6 5.1 73 123-207 54-126 (401)
127 PF07407 Seadorna_VP6: Seadorn 46.3 25 0.00054 39.1 4.3 24 138-161 32-55 (420)
128 PRK14872 rod shape-determining 45.9 20 0.00043 40.3 3.6 42 138-197 57-98 (337)
129 COG1792 MreC Cell shape-determ 45.5 42 0.00092 36.8 6.0 43 137-197 65-107 (284)
130 KOG4403 Cell surface glycoprot 45.0 60 0.0013 37.5 7.1 27 280-307 397-423 (575)
131 smart00340 HALZ homeobox assoc 44.6 20 0.00044 28.4 2.4 19 184-202 16-34 (44)
132 PF00170 bZIP_1: bZIP transcri 44.0 1E+02 0.0023 25.8 6.9 23 137-159 25-47 (64)
133 PF15058 Speriolin_N: Sperioli 43.2 32 0.0007 35.6 4.3 40 140-201 7-46 (200)
134 KOG4571 Activating transcripti 42.6 73 0.0016 35.1 7.1 43 134-197 244-286 (294)
135 KOG2761 START domain-containin 42.5 36 0.00077 36.1 4.6 184 551-775 25-213 (219)
136 cd07824 SRPBCC_6 Ligand-bindin 42.3 2.5E+02 0.0054 26.7 10.3 120 346-491 8-130 (146)
137 PF06156 DUF972: Protein of un 41.7 50 0.0011 31.2 5.0 21 181-201 37-57 (107)
138 cd07822 SRPBCC_4 Ligand-bindin 41.4 43 0.00092 30.7 4.6 51 455-508 91-141 (141)
139 PF14389 Lzipper-MIP1: Leucine 40.0 1.6E+02 0.0036 26.7 7.9 71 129-202 6-76 (88)
140 cd07823 SRPBCC_5 Ligand-bindin 39.2 3.4E+02 0.0075 25.7 10.8 29 343-371 3-31 (146)
141 cd07823 SRPBCC_5 Ligand-bindin 39.2 15 0.00033 35.1 1.3 26 592-617 3-28 (146)
142 KOG3755 SATB1 matrix attachmen 38.4 9.2 0.0002 45.4 -0.4 60 77-136 692-759 (769)
143 PRK00888 ftsB cell division pr 38.2 30 0.00066 32.4 3.0 42 119-161 16-57 (105)
144 KOG3119 Basic region leucine z 37.8 69 0.0015 34.9 6.1 25 181-205 230-254 (269)
145 PF14197 Cep57_CLD_2: Centroso 37.5 86 0.0019 27.3 5.5 19 181-199 48-66 (69)
146 KOG0709 CREB/ATF family transc 37.5 2.3E+02 0.005 33.3 10.3 97 80-204 218-317 (472)
147 PRK13169 DNA replication intia 36.1 66 0.0014 30.6 4.9 19 181-199 37-55 (110)
148 cd07819 SRPBCC_2 Ligand-bindin 35.2 30 0.00065 31.9 2.5 30 589-618 3-32 (140)
149 PF04545 Sigma70_r4: Sigma-70, 34.8 39 0.00084 26.7 2.8 40 82-126 4-43 (50)
150 cd08865 SRPBCC_10 Ligand-bindi 34.8 25 0.00054 32.1 1.9 28 591-618 2-29 (140)
151 PF10604 Polyketide_cyc2: Poly 34.6 39 0.00084 31.0 3.2 29 590-618 4-32 (139)
152 KOG4196 bZIP transcription fac 33.6 1.9E+02 0.004 28.5 7.5 53 123-203 64-118 (135)
153 KOG3119 Basic region leucine z 33.2 81 0.0018 34.3 5.8 24 182-205 224-247 (269)
154 PRK10884 SH3 domain-containing 33.2 2.4E+02 0.0052 29.6 9.0 19 143-161 130-148 (206)
155 PRK03975 tfx putative transcri 32.7 59 0.0013 32.2 4.2 47 81-133 5-51 (141)
156 cd07821 PYR_PYL_RCAR_like Pyra 32.2 35 0.00077 31.2 2.5 27 591-617 4-30 (140)
157 PRK13729 conjugal transfer pil 32.1 1.2E+02 0.0026 35.7 7.1 63 121-197 59-121 (475)
158 cd08901 SRPBCC_CalC_Aha1-like_ 31.3 30 0.00065 32.8 1.9 27 590-616 2-28 (136)
159 cd07817 SRPBCC_8 Ligand-bindin 31.2 36 0.00078 31.4 2.4 28 591-618 3-30 (139)
160 cd06171 Sigma70_r4 Sigma70, re 31.2 28 0.00061 26.3 1.4 44 82-130 10-53 (55)
161 cd05018 CoxG Carbon monoxide d 31.1 27 0.00059 32.4 1.5 28 591-618 4-31 (144)
162 TIGR00219 mreC rod shape-deter 31.0 71 0.0015 35.0 4.9 43 143-203 64-107 (283)
163 cd08866 SRPBCC_11 Ligand-bindi 30.9 33 0.00071 32.2 2.1 28 591-618 2-29 (144)
164 PF15392 Joubert: Joubert synd 30.8 2.6E+02 0.0057 31.3 9.0 20 151-170 75-94 (329)
165 TIGR03752 conj_TIGR03752 integ 29.9 1.2E+02 0.0026 35.7 6.6 20 181-200 117-136 (472)
166 PF04967 HTH_10: HTH DNA bindi 29.1 60 0.0013 26.9 3.0 38 83-120 1-40 (53)
167 cd08862 SRPBCC_Smu440-like Lig 28.2 43 0.00093 30.8 2.4 30 589-618 2-31 (138)
168 cd07814 SRPBCC_CalC_Aha1-like 27.9 37 0.0008 31.3 1.8 28 591-618 3-30 (139)
169 cd07818 SRPBCC_1 Ligand-bindin 27.8 1.1E+02 0.0023 28.9 5.1 32 590-621 4-35 (150)
170 cd07825 SRPBCC_7 Ligand-bindin 27.8 44 0.00094 31.4 2.3 26 592-617 4-29 (144)
171 TIGR02449 conserved hypothetic 27.8 1.9E+02 0.0041 25.1 5.8 17 143-159 12-28 (65)
172 PRK06266 transcription initiat 27.4 53 0.0011 33.6 3.0 34 164-197 137-170 (178)
173 smart00340 HALZ homeobox assoc 27.3 57 0.0012 25.9 2.4 28 135-162 2-29 (44)
174 KOG0288 WD40 repeat protein Ti 27.2 1.3E+02 0.0029 34.7 6.2 24 446-470 324-347 (459)
175 cd07812 SRPBCC START/RHO_alpha 27.2 44 0.00095 29.4 2.1 27 592-618 3-29 (141)
176 cd07812 SRPBCC START/RHO_alpha 27.1 4.2E+02 0.009 23.0 10.7 28 344-371 4-31 (141)
177 PRK00888 ftsB cell division pr 26.0 99 0.0022 29.0 4.3 37 123-159 26-62 (105)
178 PF00424 REV: REV protein (ant 26.0 86 0.0019 28.9 3.7 34 88-137 14-49 (91)
179 KOG4343 bZIP transcription fac 25.3 79 0.0017 37.5 4.1 22 141-162 312-333 (655)
180 PF12824 MRP-L20: Mitochondria 22.5 1.8E+02 0.0039 29.5 5.7 47 80-128 83-129 (164)
181 PRK10884 SH3 domain-containing 22.3 1.3E+02 0.0028 31.6 4.8 17 143-159 137-153 (206)
182 cd07822 SRPBCC_4 Ligand-bindin 22.3 68 0.0015 29.3 2.5 28 591-618 3-30 (141)
183 cd00569 HTH_Hin_like Helix-tur 22.1 94 0.002 20.8 2.7 37 82-123 5-41 (42)
184 PRK13922 rod shape-determining 22.1 1.3E+02 0.0028 32.4 4.9 47 139-203 63-109 (276)
185 PF07151 DUF1391: Protein of u 21.4 45 0.00097 26.6 0.9 8 494-501 38-45 (49)
186 PF00196 GerE: Bacterial regul 21.3 84 0.0018 25.5 2.5 46 81-132 2-47 (58)
187 KOG3156 Uncharacterized membra 21.2 2.7E+02 0.0058 29.6 6.6 48 136-203 92-139 (220)
188 PF08961 DUF1875: Domain of un 20.7 33 0.00072 36.3 0.0 37 135-192 126-162 (243)
189 cd07820 SRPBCC_3 Ligand-bindin 20.6 67 0.0015 30.3 2.1 26 592-617 3-28 (137)
190 KOG4571 Activating transcripti 20.2 2.3E+02 0.005 31.3 6.2 21 181-201 263-283 (294)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=6.6e-89 Score=698.64 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 004026 279 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 358 (778)
Q Consensus 279 k~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~l 358 (778)
|++|++||++||+||++||++++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|.||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999988777 6999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccC
Q 004026 359 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 438 (778)
Q Consensus 359 mD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~ 438 (778)
||+++|.++||+||++|+|++||++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 439 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 439 ~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
.+..+.++||||+|||||||||+|||||||||||+|||++.+|.+||+|++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4444458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=1.3e-17 Score=168.17 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 004026 284 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 361 (778)
Q Consensus 284 ~lA~~Am~El~~la~~~~plWi~~~--~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD~ 361 (778)
++|+++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 5899999999999999999998875 332 1222222111 1246778999999999999999999998
Q ss_pred h-hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccCCC
Q 004026 362 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 440 (778)
Q Consensus 362 ~-~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~ 440 (778)
. +|-.++ ..++.++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.....+
T Consensus 69 ~~~Wd~~~----~~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMC----VEAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTE----EEEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccch----hhheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 899885 366777777643 578888899999999999 9999999999999999999999998664433
Q ss_pred CCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 441 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 441 ~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+.+.++.+...--++.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 23458999999999999999999999999999999999999999999999999989999999988765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=3.4e-16 Score=158.22 Aligned_cols=202 Identities=34% Similarity=0.526 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhh-HHHHhcCh
Q 004026 285 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 361 (778)
Q Consensus 285 lA~~Am~El~~la~~~~plWi~~~~--~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~-LVe~lmD~ 361 (778)
-|++++.|+++++...+..|....+ .+ ..|.+.+ .+.+..+.+-|..++|...+.+ +.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999999764 22 1111111 1123557899999999999997 55666665
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccCCCC
Q 004026 362 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 441 (778)
Q Consensus 362 ~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~~ 441 (778)
.+...+-..+..++.++.++.+ ..+......+.. +| ++.|||.++|++++.++|.|+|+..|++.... +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 2222233334567888877643 233333333333 35 55699999999999999999999999986432 21
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 004026 442 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 509 (778)
Q Consensus 442 ~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 509 (778)
...++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23589999999999999999999999999999999998889999999999999999999999999973
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.66 E-value=8.4e-17 Score=163.06 Aligned_cols=81 Identities=32% Similarity=0.512 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHH
Q 004026 79 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 158 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ 158 (778)
++.|||.+|+..||+.|+...|..+.+|..||++|||.+|||+|||||||||||.++...++..|+.+++.|+.+|..|.
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred h
Q 004026 159 D 159 (778)
Q Consensus 159 e 159 (778)
.
T Consensus 133 ~ 133 (198)
T KOG0483|consen 133 S 133 (198)
T ss_pred H
Confidence 4
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.64 E-value=2.6e-16 Score=168.02 Aligned_cols=67 Identities=33% Similarity=0.452 Sum_probs=62.0
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHh
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 139 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 139 (778)
..+|||+|..||..|+.+||+.|+.++|++..+|++||..|.|++.||||||||||-|.||+++.++
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 4567778888999999999999999999999999999999999999999999999999999876644
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.63 E-value=2.2e-16 Score=170.56 Aligned_cols=67 Identities=36% Similarity=0.471 Sum_probs=62.6
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
...+|+||.||.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 167 ~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 167 STPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 3457778889999999999999999999999999999999999999999999999999999987765
No 7
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.63 E-value=6e-16 Score=155.40 Aligned_cols=65 Identities=34% Similarity=0.433 Sum_probs=61.1
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
+.+|||.||.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+..-
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999999999987643
No 8
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=8.5e-16 Score=157.57 Aligned_cols=74 Identities=30% Similarity=0.451 Sum_probs=67.0
Q ss_pred CcCC-CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHH
Q 004026 76 RKKR-YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDK 149 (778)
Q Consensus 76 ~rr~-RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~ 149 (778)
+||+ ||.||..|+++||+.|++.+||+...|+.||.++.|.+.+|+|||||||+||||+.++.......+++.-
T Consensus 140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeygl 214 (332)
T KOG0494|consen 140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYGL 214 (332)
T ss_pred ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhcc
Confidence 4444 8899999999999999999999999999999999999999999999999999999999887777766543
No 9
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.59 E-value=3.5e-16 Score=140.95 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+|+||-|+.||..|+.+||+.|-+.+||++..|++||.++.|++.+|||||||||+|.||+.+
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999997653
No 10
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=5.9e-16 Score=164.08 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.6
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
.+.||.|+.||..|+.+||+.|+.++|.+..+|.|||..|.|+++||||||||||+||||.++..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45688999999999999999999999999999999999999999999999999999999866543
No 11
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.58 E-value=9e-16 Score=150.74 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=61.3
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
+.||.||.||.+|+..||..|+.++|-...+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6688899999999999999999999999999999999999999999999999999999988775
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.57 E-value=1.2e-15 Score=154.93 Aligned_cols=73 Identities=27% Similarity=0.370 Sum_probs=66.1
Q ss_pred CCCCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhh
Q 004026 69 DAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENS 141 (778)
Q Consensus 69 ~~~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~ 141 (778)
-+++.+|.||.||.|+.-||+.|.+.|+++.|+-..+|.+||..|||+..||||||||||.|.||..+..+..
T Consensus 115 ~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~ 187 (245)
T KOG0850|consen 115 PNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGP 187 (245)
T ss_pred cCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCc
Confidence 3456777899999999999999999999999999999999999999999999999999999999987754433
No 13
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.56 E-value=3.3e-15 Score=159.66 Aligned_cols=65 Identities=38% Similarity=0.436 Sum_probs=60.8
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
.++.||||.-||+.|+.+||+.|-.|.|.+...|.+|++.|+|++|||||||||||.|+||..++
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 35668888999999999999999999999999999999999999999999999999999988754
No 14
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.51 E-value=1.3e-14 Score=145.23 Aligned_cols=65 Identities=38% Similarity=0.505 Sum_probs=60.2
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
+.+..||.|+-||..|+..||+.|++.+|.++.+|.+++..|.|++.||||||||||+|.||.|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 34455888999999999999999999999999999999999999999999999999999998764
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.51 E-value=4.5e-15 Score=153.17 Aligned_cols=68 Identities=31% Similarity=0.408 Sum_probs=61.4
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHh
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 139 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 139 (778)
+.+.|-|.|.+||..|..+||+.|..++|..+.++.|||..|||+||||||||||||+|+||.++++.
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999998777643
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.48 E-value=1.9e-14 Score=145.72 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=63.7
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
...+|.||.||+||..|+++||..|.+..|||...|++||.+|+|.+.+|||||.|||+|+|++++.+
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 44677899999999999999999999999999999999999999999999999999999999887664
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.46 E-value=4.2e-14 Score=115.66 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
||+|++||.+|+..||..|+.++||+..++++||.++||++.||++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.40 E-value=4.7e-13 Score=137.69 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=56.1
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
||.||.||.+||+.|+..|++++|..+..|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999754
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.33 E-value=6.5e-13 Score=139.15 Aligned_cols=66 Identities=30% Similarity=0.374 Sum_probs=60.5
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
+....-||.||.||.+||..||+.|-+..|-+...|.|||..|+|++..|||||||||.|+|||..
T Consensus 176 sa~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 176 SADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred CccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 344566889999999999999999999999999999999999999999999999999999997643
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.29 E-value=3.1e-12 Score=105.92 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.7
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCC----CCHHHHHHHHHhhccccceeeehhhhhh
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 128 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 128 (778)
+||.||.||.+|+..||..|+.++| |+...|.+||.++||++++|||||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 21
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.28 E-value=2.5e-12 Score=104.33 Aligned_cols=56 Identities=45% Similarity=0.788 Sum_probs=52.3
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
++.|++|+.+|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 34567899999999999999999999999999999999999999999999999864
No 22
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.27 E-value=2.5e-12 Score=126.53 Aligned_cols=66 Identities=32% Similarity=0.518 Sum_probs=59.8
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhh
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 140 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~ 140 (778)
..+++|+|.|.+|+..|++.|+.++||+...|.+|+..++++++-||+||||||++.|++......
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 446677889999999999999999999999999999999999999999999999999987665443
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.27 E-value=6.5e-11 Score=116.86 Aligned_cols=186 Identities=19% Similarity=0.307 Sum_probs=137.9
Q ss_pred HHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC---hhhh
Q 004026 288 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD---PNRW 364 (778)
Q Consensus 288 ~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD---~~~W 364 (778)
+|..+++.+.+.+ ..|-...+.+ +..-|.+.++.. ....-|..++|..++.++.++|+| ..+|
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 7898764432 122244433221 346789999999999999999999 4455
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccCCCCCCC
Q 004026 365 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPA 444 (778)
Q Consensus 365 ~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~~~~~ 444 (778)
-.. +.+++.++.++. ...++|..+..|.| +++|||.++|++.+.++|.++|+-.|++... .+....
T Consensus 68 ~~~----~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~ 133 (193)
T cd00177 68 DKN----FEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKG 133 (193)
T ss_pred hhc----ceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCC
Confidence 443 344555554432 26889999999999 9999999999999999999999999999741 122225
Q ss_pred ccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 004026 445 FVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 505 (778)
Q Consensus 445 ~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR 505 (778)
++|++.+++|++|+++++|.|+||++-|++..-+.. ..++.+.+.-.+..++..++.
T Consensus 134 ~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 134 YVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred cEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 799999999999999999999999999999886543 345666666666677766644
No 24
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.27 E-value=3.6e-12 Score=104.08 Aligned_cols=57 Identities=47% Similarity=0.818 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 78 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 78 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++..|+.+|+..||..|..++||+..++.+||.++||+++||+.||+|||++.|+.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999999999999998853
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.26 E-value=8.1e-13 Score=128.24 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=60.6
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHh
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 139 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 139 (778)
+++|.|+.|+..|+..||+.|+..+|.+..+|.+||..|+|+++|||.||||||.|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45777999999999999999999999999999999999999999999999999999998877644
No 26
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.25 E-value=5.4e-12 Score=133.35 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.6
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.|+||.|+.||..|+++||..|+++.||+...|++||...+|++.+|+|||.|||+||||.+
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 36788899999999999999999999999999999999999999999999999999999654
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.19 E-value=1.9e-11 Score=127.58 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=71.4
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRA 152 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~ 152 (778)
..||.||.+|..|++.|+..|+..++|-...|++|+.++||.-|.|||||||||||+||-++.....++.|-...++.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK~ 243 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMKR 243 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhhc
Confidence 348889999999999999999999999999999999999999999999999999999999998888888886655443
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.17 E-value=8.7e-12 Score=125.77 Aligned_cols=65 Identities=34% Similarity=0.482 Sum_probs=59.5
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
..++|..|..|+..|+..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+..-
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 34666678889999999999999999999999999999999999999999999999999987643
No 29
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.16 E-value=2e-11 Score=133.35 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=58.7
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.|||||||.|+......||++|.+|++|+..+..+||.+|+|+...|+|||+|||.|.||..
T Consensus 292 ~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 292 SRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred ccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 47888999999999999999999999999999999999999999999999999999999643
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.11 E-value=2.9e-09 Score=110.17 Aligned_cols=201 Identities=12% Similarity=0.169 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcCh---h
Q 004026 287 LAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---N 362 (778)
Q Consensus 287 ~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V-~~~~~~LVe~lmD~---~ 362 (778)
++.+++|+.++..+ .-|-...+... .+.|.+.. .+...-.-|..+++ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 37889999999654 48977643321 22222211 23333456777765 57889999999995 6
Q ss_pred hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccCCCCC
Q 004026 363 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGA 442 (778)
Q Consensus 363 ~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~~~ 442 (778)
+|-..| ..++.++.+. ....++|..+..|-| |..|||.++|..+..+ |..+|+..|++... .+..
T Consensus 75 ~Wd~~~----~e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 75 TWDSNM----IESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhhhh----ceeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 777653 3456666553 223788888888988 8999999999998776 88899999987432 2222
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 004026 443 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 520 (778)
Q Consensus 443 ~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerla~~~~~~~~~ 520 (778)
..++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++....-.+-.++..|+++|+...-.++.+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999999999998765 443 24666666677799999999999999988877664
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.02 E-value=7.6e-09 Score=105.86 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeeccC-CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-
Q 004026 283 LELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 360 (778)
Q Consensus 283 ~~lA~~Am~El~~la~~~~plWi~~~~-~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD- 360 (778)
-.+|..|.+|++++.. .+.-|....+ .+ .+.|.+.. .++..-.-|..+.|..++.++++.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~----------i~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 4 KVIAEKLANEALQYIN-DTDGWKVLKTVKN----------ITVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHhc-CcCCcEEEEcCCC----------cEEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 4688899999999987 4478977532 22 12221110 122222358889999999999999998
Q ss_pred ----hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhc-ccccccCceeEEEeeeceecCceEEEEEEeccC
Q 004026 361 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 435 (778)
Q Consensus 361 ----~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~-~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~ 435 (778)
+.+|... +..++.++-|... ..++|..+-- +.++|.+|||.++||.++.++|.++|+-.|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678765 4567777766421 2455553221 235799999999999999999999999999975
Q ss_pred ccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 004026 436 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 507 (778)
Q Consensus 436 ~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 507 (778)
.. .+..+.++|+...++|++|++.+ ++.|+|||+-|++..-+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 42 22223589999999999999886 57899999999987643 33 44577777766778899997764
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.98 E-value=2.7e-10 Score=117.28 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566888999999999999999999999999999999999999999999999999999997654
No 33
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.97 E-value=1.3e-08 Score=104.32 Aligned_cols=194 Identities=15% Similarity=0.235 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccC-C-CcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHH-h
Q 004026 282 FLELALAAMDELVKMAQTDEPLWIRSFE-G-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-L 358 (778)
Q Consensus 282 ~~~lA~~Am~El~~la~~~~plWi~~~~-~-~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~-l 358 (778)
-..+++.|++|++.+.. ++-|-...+ . | .+.|.+.. .| ..-.-|..++|...+.++++. |
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~----------i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~ 68 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWG----------DVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELV 68 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCC----------CEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHH
Confidence 57788999999999954 558977543 2 2 12222221 11 114688889999999999764 4
Q ss_pred cC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcc-cccccCceeEEEeeeceecCceEEEEEEecc
Q 004026 359 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSID 434 (778)
Q Consensus 359 mD---~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~-SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d 434 (778)
.| +.+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++
T Consensus 69 ~d~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~ 135 (208)
T cd08868 69 LNVESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVE 135 (208)
T ss_pred cCccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEecc
Confidence 45 46777763 3344544443 2234566433332 3689999999999999866 67999999987
Q ss_pred CccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 004026 435 TIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 510 (778)
Q Consensus 435 ~~~~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerl 510 (778)
... .|....++|+...++|++|+++++ +.|+|||+-|++..-+ +|.- ++++.+.-+.-.+++.|+++|+.|
T Consensus 136 h~~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 136 HPA-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCC-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 432 122235899999999999999987 6899999999987755 3332 377777888889999999998753
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.84 E-value=4.7e-08 Score=100.64 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcCh
Q 004026 283 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMDP 361 (778)
Q Consensus 283 ~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~-~~g~~~eAsR~~~~V~~~~~~LVe~lmD~ 361 (778)
..|+++|++|++++-+ +.-.|-.-.++. +. .+..+ .+.+.+---|..|+|..++.+|+|.+-|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~-----~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KI-----TVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCC---------ce-----EEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 5789999999999976 568897754332 01 11112 13444467799999999999999999887
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhh-cccccccCceeEEEeeeceecCceEEEEEEeccCccCCC
Q 004026 362 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 440 (778)
Q Consensus 362 ~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~-~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~ 440 (778)
+...+-=+ .+..++.++-|.. ...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.- |
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id~--------~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRIDS--------DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeCC--------CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 64433222 3455666666542 2246665543 4557899999999999999999999999999974432 2
Q ss_pred CCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 004026 441 GAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 478 (778)
Q Consensus 441 ~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~ 478 (778)
..+.++|++..|+||+|++.+++ +|++||+-+++..-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 22358999999999999999875 899999999777644
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.76 E-value=4.7e-09 Score=116.15 Aligned_cols=65 Identities=31% Similarity=0.504 Sum_probs=59.6
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
..++.+|.|+.|+..|++.||+.|+.++||+...|++||.++++++.+|++||+|||+|++|+..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 34556777899999999999999999999999999999999999999999999999999997653
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.66 E-value=6.2e-07 Score=92.43 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh-
Q 004026 283 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP- 361 (778)
Q Consensus 283 ~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD~- 361 (778)
.+++++|+++++.+-+ .+..|-...+.. +.+.|.+... .+.+-.-|.-|+|..++.+|++.|+|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhcc
Confidence 5788999999999974 677897754321 1223322110 111112788899999999999999965
Q ss_pred ----hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccc---cccCceeEEEeeeceecCceEEEEEEecc
Q 004026 362 ----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSID 434 (778)
Q Consensus 362 ----~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~Sp---Lvp~Re~~fLRyc~q~~~g~w~VvDvS~d 434 (778)
.+|-..| ..++.|+-|. +...+.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|+.
T Consensus 70 ~~~r~~W~~~~----~~~~vle~id--------~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~ 135 (208)
T cd08903 70 GGLRVKWDQNV----KDFEVVEAIS--------DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE 135 (208)
T ss_pred chhhhhhhhcc----ccEEEEEEec--------CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc
Confidence 6888873 4445555544 11233443 44555 79999999999999999999887777766
Q ss_pred CccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 004026 435 TIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 507 (778)
Q Consensus 435 ~~~~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 507 (778)
.-. -|..+.++|++..|+|++|.+.++ +.|+|||+-|++..- .+| +.++++.++=...-.+..|+++.
T Consensus 136 h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 136 HPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred CCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 421 122235899999999999999964 589999998887643 344 34454444334444566665554
No 37
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.58 E-value=4.8e-07 Score=92.44 Aligned_cols=167 Identities=13% Similarity=0.244 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhcCCCCCeeeccC-CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh-hhh
Q 004026 287 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 364 (778)
Q Consensus 287 ~~Am~El~~la~~~~plWi~~~~-~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD~-~~W 364 (778)
+.+.++||+-+...+.-|.-..+ .| .+| |.|.. +.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999977532 22 122 22221 23445567788899999999999877764 467
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeece-ecCceEEEEEEeccCccCCCCCC
Q 004026 365 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 443 (778)
Q Consensus 365 ~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q-~~~g~w~VvDvS~d~~~~~~~~~ 443 (778)
-..| .+++.++-++. ...+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~~----~~~~vie~id~--------~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDDL----LQWKVVETLDE--------DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chhh----heEEEEEEecC--------CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 7663 45566665541 23577877777877 59999999998875 67889999999986321111 1
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccccccc
Q 004026 444 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQ 482 (778)
Q Consensus 444 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 482 (778)
.++|++.+++|++|++.++|.|+|||+-|++.-- .+|.
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCc
Confidence 5899999999999999999999999999998643 3444
No 38
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.56 E-value=8.1e-07 Score=91.57 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=99.0
Q ss_pred CCceeeeeceeEEEechhhH-HHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeE
Q 004026 335 GFVTEASRETGMVIINSLAL-VETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 413 (778)
Q Consensus 335 g~~~eAsR~~~~V~~~~~~L-Ve~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~ 413 (778)
+...-+-|....|.-.+..+ -.++.++.+|-..| ..+++++-|. +...+.|--+.-|-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~----~~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDF----LQWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhc----ceeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 34445677777777777766 44677788898876 5567777665 2245666666666675 999999
Q ss_pred EEeeece-ecCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 004026 414 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 478 (778)
Q Consensus 414 fLRyc~q-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~ 478 (778)
.+|+-++ +++|..+|+..|++.....+ ..++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 9999765 57999999999999764322 247999999999999999999999999999987544
No 39
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.52 E-value=7.9e-07 Score=104.45 Aligned_cols=129 Identities=18% Similarity=0.303 Sum_probs=104.3
Q ss_pred eeeeceeEEEechhhHHHHhcChh----hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhh--cccccccCcee
Q 004026 339 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 412 (778)
Q Consensus 339 eAsR~~~~V~~~~~~LVe~lmD~~----~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~--~~SpLvp~Re~ 412 (778)
-+=|+.|+|...+.+|.|.+|+.+ +|=..| ..++.++-|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 577899999999999999999776 666554 6677777664 55567776664 44567778999
Q ss_pred EEEeeeceecCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecC--C--CccEEEEEEeeeeccccc
Q 004026 413 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 480 (778)
Q Consensus 413 ~fLRyc~q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 480 (778)
+++||-+..+||+++|+=+|+..-...+ .+.++|++..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP-~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGP-QPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCC-CCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 9999999999999999999988543222 23589999999999999964 3 379999999999998874
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.51 E-value=6.2e-08 Score=101.71 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.5
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
..||||||.+..-+.+.||.+|...+.|+.+....+|++|.|....|+|||+|.|.|.||..
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 35678889999999999999999999999999999999999999999999999999998743
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.49 E-value=1.3e-06 Score=90.18 Aligned_cols=193 Identities=13% Similarity=0.203 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 004026 281 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 358 (778)
Q Consensus 281 ~~~~lA~~Am~El~~la~~~~plWi~~~--~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~l 358 (778)
--..++++|++|++++.+ .+..|-... +.| ..| |.+.+|.. | -+-|.-++|..++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 346789999999999986 666897752 223 111 22333222 1 45667789999999999555
Q ss_pred c-Ch---hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccc--cccCceeEEEeeeceecCceEEEEEEe
Q 004026 359 M-DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVS 432 (778)
Q Consensus 359 m-D~---~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~Sp--Lvp~Re~~fLRyc~q~~~g~w~VvDvS 432 (778)
. |. .+|... |.-.++|.... ....++|. ..+|.| +|..|||..+|+.++.+++. +++..|
T Consensus 69 ~~d~e~~~~W~~~-------~~~~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s 134 (209)
T cd08905 69 VDRMEQMGEWNPN-------VKEVKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMA 134 (209)
T ss_pred Hhchhhhceeccc-------chHHHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEe
Confidence 4 53 567765 44444454332 12245664 667766 79999999999999986654 556677
Q ss_pred ccCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 433 IDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 433 ~d~~~~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
.+.-. -|....++|.+..+.|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 135 ~~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 135 THFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred ecCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 55322 122235899999999999999988 9999999999987755 443 45666666666678888877654
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.39 E-value=7.6e-06 Score=84.58 Aligned_cols=195 Identities=10% Similarity=0.165 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeec-cC-CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HH
Q 004026 281 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 357 (778)
Q Consensus 281 ~~~~lA~~Am~El~~la~~~~plWi~~-~~-~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LV-e~ 357 (778)
-....+++||++|.++... +..|.-. .+ .| .+.|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567799999999999764 4579753 22 33 122222111111223 66677888888995 68
Q ss_pred hcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccc--cccCceeEEEeeeceecCceEEEEEEeccC
Q 004026 358 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 435 (778)
Q Consensus 358 lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~Sp--Lvp~Re~~fLRyc~q~~~g~w~VvDvS~d~ 435 (778)
|.|.+...+=.+.+ ..++.|+-++. .--+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88876444333333 33555554441 123556 6556654 6899999999999998888 5777788764
Q ss_pred ccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 004026 436 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 507 (778)
Q Consensus 436 ~~~~~~~~~~~~~~~~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 507 (778)
.. .|..+.++|.+..++|++|++. .+|.|+|||+-|++..-+ +|. .+++..++=..--.+..|.++.
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~---~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPR---YLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222358999999999999985 577999999999987653 332 3465555544555566665554
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.35 E-value=7.9e-06 Score=83.71 Aligned_cols=191 Identities=14% Similarity=0.158 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcC-
Q 004026 283 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD- 360 (778)
Q Consensus 283 ~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~-~~g~~~eAsR~~~~V~~~~~~LVe~lmD- 360 (778)
..+|.++-+++++--+.++-.|-.-.+.+. -.+..+ +.-|.+---|.-|+|.-.+..|++.+-+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~ 69 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPG 69 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcc
Confidence 567777788899977779999976533221 111222 2245555667788998999999999999
Q ss_pred --hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCceEEEEEEeccCccC
Q 004026 361 --PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 438 (778)
Q Consensus 361 --~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~~~~ 438 (778)
+.+|=+. |..++.|+-|.. +++-.-|.=.-.+-++|-+|||.-+||+++.++|. +.|=||++....
T Consensus 70 ~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~ 137 (202)
T cd08902 70 PYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEA 137 (202)
T ss_pred cchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCC
Confidence 5599886 455666655542 33322255556777899999999999999999998 777888875432
Q ss_pred CCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHH
Q 004026 439 TSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 506 (778)
Q Consensus 439 ~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ 506 (778)
++.++|.+..|+||++.+.+|| .|+.||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 138 ---ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 138 ---RPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred ---CCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 2258999999999999999998 677889999777644 224456554443333335555443
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.20 E-value=9.6e-07 Score=92.68 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 83 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 83 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
|-..-...|..+|..++||+..++.+||+.+||+..||-.||+|||.|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 44455678999999999999999999999999999999999999999988
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.14 E-value=2.8e-05 Score=80.25 Aligned_cols=183 Identities=15% Similarity=0.240 Sum_probs=124.3
Q ss_pred HHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChh---hhhhhcc
Q 004026 294 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 369 (778)
Q Consensus 294 ~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~-~~~~~LVe~lmD~~---~W~~~Fp 369 (778)
+..-+.+.+-|-...+... .+.|.+.. .|...-.=|+.+.+. ..+..|.++|+|.+ +|...+
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~- 82 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV- 82 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH-
Confidence 3334455577987654321 12232211 233333678888888 79999999999965 666653
Q ss_pred cccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeece-ecCc--eEEEEEEeccCccCCCCCCCcc
Q 004026 370 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEG--VWAVVDVSIDTIRETSGAPAFV 446 (778)
Q Consensus 370 ~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q-~~~g--~w~VvDvS~d~~~~~~~~~~~~ 446 (778)
.. .++.++ .+ ..++|-.+..|-| +..|||.++|-... ..+| .|+|+..|.+... .|....++
T Consensus 83 --~~---~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~-~P~~~~~V 147 (207)
T cd08910 83 --KE---LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQ-LPEKPGVI 147 (207)
T ss_pred --Hh---heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCCC-CCCCCCCE
Confidence 21 223222 12 3678999999999 99999999964443 3344 6899888876431 12223589
Q ss_pred ceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 004026 447 NCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 509 (778)
Q Consensus 447 ~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 509 (778)
|....-+|++|++..++.|+|+++-|.+-. ..+|. -+++.....+...|+..|+..|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 999999999999998889999999998853 23443 257777788889999999888853
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.01 E-value=9.2e-05 Score=76.42 Aligned_cols=200 Identities=15% Similarity=0.071 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 004026 282 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 361 (778)
Q Consensus 282 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD~ 361 (778)
+++=+...|.|+++..+. +.-|....+.. +.+.|-+.. ++-..-+-|.-|+|..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 344556788898888776 56798865431 122222211 1222467788999999999999999999
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEE-eeecee-cCceEEEEEEeccCccC-
Q 004026 362 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 438 (778)
Q Consensus 362 ~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fL-Ryc~q~-~~g~w~VvDvS~d~~~~- 438 (778)
+...+-+|.. ..++.++.++- .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8766666653 33455544431 12567777777777 888999975 556777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 439 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 439 -------~~~~~-~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
-|..+ .++|.....+|++|+++++|.|+|+++-|++-.-+-+|.=+ ++...--.+...+..|++.|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~l---iN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSL---LNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 12233 58999999999999999999999999999663322266543 333344445667777777765
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.97 E-value=0.00011 Score=75.97 Aligned_cols=163 Identities=18% Similarity=0.246 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccC-CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-hh
Q 004026 285 LALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PN 362 (778)
Q Consensus 285 lA~~Am~El~~la~~~~plWi~~~~-~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lmD-~~ 362 (778)
.-+..+++|++.|+.--=-|+.-.. .+ .|+- |. .+..|...-.-|....+.-.+.+++..|+| +.
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~--------k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~ 76 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YK--------KVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQH 76 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Ee--------ccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHH
Confidence 3446777777777644445555211 11 1110 11 122344455667777788888888855555 56
Q ss_pred hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeec-eecCceEEEEEEeccCccCCCC
Q 004026 363 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSG 441 (778)
Q Consensus 363 ~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~-q~~~g~w~VvDvS~d~~~~~~~ 441 (778)
+|-..+ ..++.++-|+. .-.+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... .|
T Consensus 77 ~Wd~~~----~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P- 141 (204)
T cd08908 77 LWDVDL----LDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP- 141 (204)
T ss_pred HHHHHh----hheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC-
Confidence 788873 45666666552 12578888889988 7999999997665 478999999999988542 12
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 004026 442 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 476 (778)
Q Consensus 442 ~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d 476 (778)
...+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 142 -~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 142 -VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred -cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 2268999999999999999999999999999754
No 48
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.89 E-value=0.00015 Score=73.14 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=104.8
Q ss_pred eeeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeee
Q 004026 339 EASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFC 418 (778)
Q Consensus 339 eAsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc 418 (778)
-.-|.+++|..++.++.+++.|.+.|.+-=|. +...+||..... + -.++|..+..|=| |..|||.+.|..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~ 110 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTT 110 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEE
Confidence 35588889999999999999998877655443 344455553321 1 2455655555544 789999987654
Q ss_pred cee-cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 004026 419 KQH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 497 (778)
Q Consensus 419 ~q~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~ 497 (778)
... ++|..+|.=.|.+.. .+....++|++.+.+|+.|++.++|.|+||++-|++..-+...-+.+.+. .=+..
T Consensus 111 ~~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~ 184 (195)
T cd08876 111 EQDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPY 184 (195)
T ss_pred EEcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHH
Confidence 333 367777766666542 12122478999999999999999999999999999887543434444443 33566
Q ss_pred HHHHHHHHHH
Q 004026 498 RWVATLQRQC 507 (778)
Q Consensus 498 rwla~LqR~c 507 (778)
+++++|.++|
T Consensus 185 ~~l~~l~~~~ 194 (195)
T cd08876 185 NTLENLRKQL 194 (195)
T ss_pred HHHHHHHHhh
Confidence 8888887665
No 49
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.86 E-value=0.00011 Score=75.94 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=92.2
Q ss_pred CCCceeeeeceeEEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhccccc-ccC
Q 004026 334 NGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPL-VPV 409 (778)
Q Consensus 334 ~g~~~eAsR~~~~V~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpL-vp~ 409 (778)
.+|.+ -++|...+.+|++.|.|.. +|-.+ +++.+||..-. ....++|.....|=|+ ++.
T Consensus 45 ~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~~ 107 (205)
T cd08874 45 HGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQP 107 (205)
T ss_pred ceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCCC
Confidence 45654 4478889999999998875 67666 56667776432 2336677776666555 399
Q ss_pred ceeEEEeeeceecCceEEEEEEeccCccCCCCCC-CccceeecCCcceEeec---CCCccEEEEEEeeeecccccc
Q 004026 410 REVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAP-AFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 481 (778)
Q Consensus 410 Re~~fLRyc~q~~~g~w~VvDvS~d~~~~~~~~~-~~~~~~~~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 481 (778)
|||..+|-....+++.. |.=.|++... -|..+ .++|.+.+++|++|+++ ++|.|+||.+-|+|---..+|
T Consensus 108 RDfV~l~~~~~~~~~~v-i~~~SV~~~~-~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 108 RDFCCLQVEAKEGELSV-VACQSVYDKS-MPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CeEEEEEEEEECCCcEE-EEEEeccccc-CCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 99999995555555544 6667777521 11112 48999999999999999 999999999999987533344
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.75 E-value=0.00013 Score=75.12 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcChhhh
Q 004026 286 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNRW 364 (778)
Q Consensus 286 A~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V-~~~~~~LVe~lmD~~~W 364 (778)
-+..+.+|++.+....--|+...+....|+- .|. .+.|...--=|.+.-| ...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk-------~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKK-------VGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEe-------CCCCCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 4578889999998777789875332102221 110 0112211111222222 23456778999999999
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeec-eecCceEEEEEEeccCccCCCCCC
Q 004026 365 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAP 443 (778)
Q Consensus 365 ~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~-q~~~g~w~VvDvS~d~~~~~~~~~ 443 (778)
=..+ -+.++|+.|..-. ++-|=-+.-| +.+|+|||.+||.-+ .+..|.-+|+.+|++....-+ ..
T Consensus 79 D~~m----~e~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~~ 144 (205)
T cd08907 79 DEDL----LHSQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-EA 144 (205)
T ss_pred hHHH----HhhhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-CC
Confidence 9874 5688888885211 2222222223 568999999999864 467789999999998654322 12
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeecccc
Q 004026 444 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQ 479 (778)
Q Consensus 444 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~ 479 (778)
-+|+--+=|||||++++.|.|+||-|-|++..-+.
T Consensus 145 -gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 145 -GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRS 179 (205)
T ss_pred -CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCC
Confidence 39999999999999999999999999999875443
No 51
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.68 E-value=1.4e-05 Score=61.69 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=29.1
Q ss_pred hCCCCCHHHHHHHHHhhccccceeeehhhhhhhH
Q 004026 97 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 130 (778)
Q Consensus 97 ~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 130 (778)
.+|||+..++.+||+++||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999875
No 52
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.65 E-value=2.7e-05 Score=81.30 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.7
Q ss_pred cCCCCCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
+|+|..|+..-.+.|..+|. .+|||+...+++||++++++-.||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 56677899999999999995 489999999999999999999999999999999998643
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.60 E-value=0.0013 Score=67.75 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=116.9
Q ss_pred eeeeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeE
Q 004026 338 TEASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 413 (778)
Q Consensus 338 ~eAsR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~ 413 (778)
.-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|.... +-...++|-.+..|-|+ -.||+.
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V 116 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDE----KSGTEIVRWVKKFPFPL-SDREYV 116 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecC----CCCcEEEEEEEECCCcC-CCceEE
Confidence 3457888888 569999999999965 67666 34444454311 10147899999999988 899999
Q ss_pred EEeeeceecCceEEEEEEeccCccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccc
Q 004026 414 FLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISG 491 (778)
Q Consensus 414 fLRyc~q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg 491 (778)
+.|-..+..+|..+|+=.|++... .+.. .++|.+.+=||++|++. .+|.++|+++-|.+- ...+|. -|++..
T Consensus 117 ~~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~ 190 (209)
T cd08870 117 IARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLA 190 (209)
T ss_pred EEEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHH
Confidence 998777777899988888877522 1211 47999999999999999 788999999999863 224554 468888
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004026 492 MGFGAQRWVATLQRQCEC 509 (778)
Q Consensus 492 ~afGA~rwla~LqR~cer 509 (778)
...|+-.||..|.+.|..
T Consensus 191 ~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 191 VKRGMPGFLKKLENALRK 208 (209)
T ss_pred HHhhhHHHHHHHHHHHhc
Confidence 899999999999888853
No 54
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.58 E-value=0.0019 Score=68.12 Aligned_cols=192 Identities=14% Similarity=0.212 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhcC--CCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChh-
Q 004026 287 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN- 362 (778)
Q Consensus 287 ~~Am~El~~la~~--~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~-~~~~~LVe~lmD~~- 362 (778)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+... ..|+....=|+.++|. ..+..+.+.|.|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 5557966543321 233332211 1244445678888888 88999999999986
Q ss_pred --hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecC-------ceEEEEEEec
Q 004026 363 --RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSI 433 (778)
Q Consensus 363 --~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~-------g~w~VvDvS~ 433 (778)
+|-.. +...+||..-. ....+.|..+-.|=| +..|||.|+|+.++.++ +.|+|+..|+
T Consensus 78 r~~Wd~~-------~~~~~vie~l~-----~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv 144 (235)
T cd08872 78 RMDWETT-------LENFHVVETLS-----QDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSV 144 (235)
T ss_pred HHHHHhh-------hheeEEEEecC-----CCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecc
Confidence 55554 34444454332 122567877888889 69999999999998876 7899999998
Q ss_pred cCccCCCCCCCccceee---cCCcceEee------c--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 004026 434 DTIRETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 502 (778)
Q Consensus 434 d~~~~~~~~~~~~~~~~---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~ 502 (778)
+.-. .|..+.++|.+. +=.|.+|.+ + .||.|+||++-|++---+--.- +++.....++-++|..
T Consensus 145 ~h~~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~ 219 (235)
T cd08872 145 DHDS-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPAS----VLRAVYKREYPKFLKR 219 (235)
T ss_pred cCcc-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHH----HHHHHHHhhchHHHHH
Confidence 7432 122234677765 223333332 1 5889999999999755443333 3555556667777777
Q ss_pred HHHHH
Q 004026 503 LQRQC 507 (778)
Q Consensus 503 LqR~c 507 (778)
|--++
T Consensus 220 ~~~~~ 224 (235)
T cd08872 220 FTSYV 224 (235)
T ss_pred HHHHH
Confidence 75543
No 55
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.52 E-value=7e-05 Score=77.23 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=59.2
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
..+.++.|+.++..|+..++..|..+++|+...+++|+..+|++++.+++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 4566778899999999999999999999999999999999999999999999999999997654
No 56
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.41 E-value=0.00013 Score=83.52 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=54.8
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
.+.||.|..||..|.+.|...|+++++|+....+.|+.+|+|....|..||=|-|.|.+
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 35577799999999999999999999999999999999999999999999999888853
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.40 E-value=0.0022 Score=66.22 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=111.2
Q ss_pred eeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEE
Q 004026 340 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 415 (778)
Q Consensus 340 AsR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fL 415 (778)
.=|+.+++ ...+..+++.|+|.+ +|-.. +...++|.-.. +-...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDP----ETGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccC----CCCCEEEEEEEECCCCC-CCccEEEE
Confidence 56775655 789999999999986 67666 34455665421 11236889999999996 89999999
Q ss_pred eeeceec-CceEEEEEEeccCccCCCCCCCccceeecCCcceEeecC---CCccEEEEEEeeeeccc-cccccchhhhcc
Q 004026 416 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIIS 490 (778)
Q Consensus 416 Ryc~q~~-~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~l~rpl~~s 490 (778)
|-..+.+ +|.++|+-.|++... .|....++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8876664 577889888887421 12123589999999999999984 677999988885 655 36653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 004026 491 GMGFGAQRWVATLQRQCEC 509 (778)
Q Consensus 491 g~afGA~rwla~LqR~cer 509 (778)
-...++-.||..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777788999999887753
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.12 E-value=0.0037 Score=66.09 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=84.2
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec-
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA- 422 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~- 422 (778)
-+.|...+.+|++.|.|.+...+=.+ .++..++|..-. ....++|..+..|. -+.+|||.++|+.++..
T Consensus 82 e~~vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~ 151 (235)
T cd08873 82 ELKVQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVLLVSRRKPAT 151 (235)
T ss_pred EEEecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEEEEEEEeccC
Confidence 34488899999999999864333221 245555555322 12346676655555 48899999999999844
Q ss_pred C-ceEEEEEEecc-CccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeee
Q 004026 423 E-GVWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 474 (778)
Q Consensus 423 ~-g~w~VvDvS~d-~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e 474 (778)
+ +..+|.=.|+. ... |..+.++|.+.+=.|++|++.++|.|+||.+-|++
T Consensus 152 ~~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 152 DGDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 4 34777777765 221 12235899999999999999999999999999986
No 59
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.11 E-value=0.025 Score=58.76 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=101.5
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
..++|... . ..++|+|..++..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+..+
T Consensus 21 ~~~~W~~~-~--~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-Y--NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-E--cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34589976 3 35789999988632 3344556666666 9999999999999999999974322 2334443
Q ss_pred ccCCCCCceEEEEEecccC-CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--ccccCCceecCCCC
Q 004026 632 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 707 (778)
Q Consensus 632 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 707 (778)
+.++.|.-...+..- -...+.++++..+.+. ++++|.+ .++-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~- 158 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG- 158 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC-
Confidence 345555545444222 3446777777644444 7766543 3432221 0111222 3567777777733
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 004026 708 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~ 775 (778)
.++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.
T Consensus 159 ----------------------~~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------------------PKGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------------------CCCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 14577777766654432 22222222 23334457778877763
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.59 E-value=0.021 Score=60.67 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=83.5
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccc--cccCceeEEEeeec
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 419 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~Sp--Lvp~Re~~fLRyc~ 419 (778)
|.-++|...+.+|.+.|.|.+...+=.+. +...++|..... + . . +|... -+.+ -+..|||-.++...
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~---~-~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDE---D-D-A-IYHVT-SPSLSGHGKPQDFVILASRR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCC---C-c-E-EEEEe-cCCCCCCCCCCeEEEEEEEE
Confidence 34468899999999999998744333222 344444543321 1 1 1 23221 1122 58899999998886
Q ss_pred eec-Cc-eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 004026 420 QHA-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 483 (778)
Q Consensus 420 q~~-~g-~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 483 (778)
+.+ +| .++|+=.|+.... -|..+.++|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 153 ~~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred eccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 654 44 4666666554322 222235899999999999999999999999999998 2355543
No 61
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.56 E-value=0.0023 Score=79.55 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=57.4
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
+|++|++++..|+..+..+|....||...+.+.|...++++++.|++||||-|+|.||...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999997655
No 62
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.50 E-value=0.017 Score=61.08 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=88.0
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhccc-ccccCceeEEEeee
Q 004026 340 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 418 (778)
Q Consensus 340 AsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~S-pLvp~Re~~fLRyc 418 (778)
+-|.-..|...+.+|.+.|.|.+...+=.+ .+...++|.--...+ . +|...-.|- |+ ..|||-++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~----~~~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDP----HFLSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHH----hhceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 444455788999999999999874433322 234445554322111 1 455443342 44 89999998776
Q ss_pred ceec-Cce-EEEEEEeccC-ccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 004026 419 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 483 (778)
Q Consensus 419 ~q~~-~g~-w~VvDvS~d~-~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 483 (778)
.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 6655 885 8888888775 222 2235899999899999999999999999999995 4555543
No 63
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.49 E-value=0.18 Score=51.70 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=102.7
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 632 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia 632 (778)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46799865 3 36799999999732 222 44568888899999999999988 6899996332 12333333
Q ss_pred cCCCCCceEEEEEecccCC-CCCceEEEEccccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--cccccCCceecCCC
Q 004026 633 KGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 706 (778)
Q Consensus 633 ~g~~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vVyA-PvD~~-~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 706 (778)
+..+.|--...+..-+ ...++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334443333332222 33455555432333 455665433 23221 11 0122 35788999998843
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHhHhhhhhHHHHHHHHHhcc
Q 004026 707 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 776 (778)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~tv~~li~~tv~~Ik~Al~~ 776 (778)
. ++|.+|--.|+=.. -.+..=-+-..+++++..|++|++.+.|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 2 35666665555433 2222223444668899999999998876
No 64
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.40 E-value=0.2 Score=51.98 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=105.3
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhh-hcCCCCcceee
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 629 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~-ls~g~~vqe~~ 629 (778)
....+|... ...++|.|.++|..+ |.|.-++. .|+=+| +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk---~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWK---VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEE---EEEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 445689866 246889999999744 56654554 455568 999999999999 999996 33322 222
Q ss_pred ecccCCCCCceEEEEEecccCCCCCceEEEEcccc-C-CCCcEEEEee-cchhhhhhhhcCCCCCCcccccCCceecCCC
Q 004026 630 HIAKGQDHGNCVSLLRASAINANQSSMLILQETCT-D-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 706 (778)
Q Consensus 630 ~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~t-d-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg 706 (778)
.| ++.|.|-=.-.+...+-.+.-|++|-++- | ..|++++.+- |+=+... ..|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 33 34455544444444445556677777773 4 5677666542 2222111 1222 1223455777777643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHhH-hhhhhHHHHHHHHHhc
Q 004026 707 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 775 (778)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~tv-~~li~~tv~~Ik~Al~ 775 (778)
. |+|-||==.|+=.... .++=+..| ..|++.-+.||++.+.
T Consensus 162 ~-----------------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 M-----------------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred C-----------------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2 5677776666655544 44555555 5667778888988764
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.26 E-value=0.18 Score=52.32 Aligned_cols=175 Identities=18% Similarity=0.263 Sum_probs=107.0
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 632 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia 632 (778)
..++|... ...+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-... ..+.+-+|
T Consensus 20 ~~~gWk~~---k~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~--~~~iie~I- 87 (204)
T cd08904 20 DTSGWKVV---KTSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQ--VYKMLQRI- 87 (204)
T ss_pred cccCCeEE---ecCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhccccc--ceeeEEEe-
Confidence 34899977 3458999999988654442 346677789999999999999999999997332 23334444
Q ss_pred cCCCCCceEEEEEeccc--C-CCCCceEEEEcccc-CCCCcEEE-EeecchhhhhhhhcCCCCCCc--ccccCCceecCC
Q 004026 633 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPD 705 (778)
Q Consensus 633 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~t-d~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pd 705 (778)
+...+|...+..+. + -+..+.+.+|-..- +- +.+++ +.-|+-+.+ ...+..| -..|+||.|.|.
T Consensus 88 ---d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~-----Pp~~g~VRa~n~~~G~~i~pl 158 (204)
T cd08904 88 ---DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQC-----PPSSNYIRGYNHPCGYVCSPL 158 (204)
T ss_pred ---CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCC-----CCCCCcEEEeeeccEEEEEEC
Confidence 55667776664421 1 23457777764222 33 33333 444444432 1123344 368999999993
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh--HhhhhhHHHHHHHHHh
Q 004026 706 GPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 774 (778)
Q Consensus 706 g~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al 774 (778)
... .++|.||.-+|+=... .|...-|.. -.+++ ..+...|.||
T Consensus 159 ~~~---------------------p~~t~l~~~~~~DlkG----~lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 159 PEN---------------------PAYSKLVMFVQPELRG----NLSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred CCC---------------------CCceEEEEEEEeCCCC----CCCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 221 1468999988854443 333333333 23333 4777777776
No 66
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.42 E-value=0.18 Score=52.40 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
-...+|..- ...++|+|.++.. +|...| +++ .+ -+++||+.|+++|.|...|.+||...... +|
T Consensus 19 ~~~~gW~l~---~~~~gI~Vy~k~~---~~~~~~-~~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWSYQ---CLEKDVVIYYKVF---NGTYHG-FLG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcEEE---ecCCCEEEEEecC---CCCcce-EEE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 456799533 2468999999864 233444 443 33 34999999999999999999999744321 22
Q ss_pred ccCCCCCceEEEEEecccCC-----CCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CcccccCCcee
Q 004026 632 AKGQDHGNCVSLLRASAINA-----NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDS-A--YVALLPSGFAI 702 (778)
Q Consensus 632 a~g~~~gn~vsllr~~~~~~-----~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~d~-~--~v~lLPSGF~I 702 (778)
.+-.+.. ..|++.....+ ...++.+|+ ++.+.-+..+| ---|+-+.+ ...+ . -+..+++|+.|
T Consensus 83 l~~~~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~-----P~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 83 HKTFTED--ICLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSM-----PEPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eeecCCC--eEEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccC-----CCCCCCeEEeeeEeeeEEE
Confidence 2222333 34444321111 446777777 45444443333 211222110 0001 1 24568888888
Q ss_pred cCC
Q 004026 703 VPD 705 (778)
Q Consensus 703 ~Pd 705 (778)
.|.
T Consensus 155 ~P~ 157 (205)
T cd08874 155 EPV 157 (205)
T ss_pred EEC
Confidence 883
No 67
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.34 E-value=1 Score=45.32 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 619 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~l 619 (778)
|++.+|... . ..++|+|..++..+ +.+..-.++..++.||+.+|+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 445559977 3 35799999988632 22456677888999999999999999999999963
No 68
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.81 E-value=0.025 Score=62.56 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=51.2
Q ss_pred CcCCCCCCCHHHHHHHHHHh-h--hCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLF-K--ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F-~--~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
++|++..+.......|+.+. + ..+||+..++..|++++||+..||..||-|.|-|..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 45556679999999999863 3 25799999999999999999999999999999887654443
No 69
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.62 E-value=1.7 Score=44.92 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=80.2
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhc
Q 004026 541 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 620 (778)
Q Consensus 541 M~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls 620 (778)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44556666665 6789977 3 35799999998732 348899999999999999999999999999999753
Q ss_pred CCCCcceeeecccCCCCCceEEEEEecccC-CCCCceEEEEcccc--CCCCcEEEEe
Q 004026 621 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 674 (778)
Q Consensus 621 ~g~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--d~sgs~vVyA 674 (778)
. ..+.+..+ +..+.|..+++...= -...++++....+. |..|+++|+.
T Consensus 79 ~--~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 I--RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2 12233333 345677877765321 23356665544343 3677777655
No 70
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.61 E-value=1.6 Score=42.88 Aligned_cols=131 Identities=19% Similarity=0.297 Sum_probs=80.2
Q ss_pred CCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 004026 555 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 634 (778)
Q Consensus 555 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia~g 634 (778)
++|..+ . ..++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~-~--~~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLV-K--EKDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEE-E--ECCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 589988 3 24589998887633 1 23456677778999999999999999999999633222 2233332
Q ss_pred CCCCceEEEEEecccC-CCCCceEEEEccccCCCC-cEEEEeecchhhhhhhhcCCCCCC--cccccCCceecCC
Q 004026 635 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPD 705 (778)
Q Consensus 635 ~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sg-s~vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pd 705 (778)
.+..|........- ....+++++.....+..+ -+++...||.+.. ..-+.. ..++++||.|-|.
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~ 149 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPL 149 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEEC
Confidence 22344444443322 334578888765445533 5666667776521 111233 3366888888884
No 71
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.43 E-value=1.8 Score=44.45 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=74.5
Q ss_pred CCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhh-hccccchhhhhhcCCCCcceeeecc
Q 004026 554 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 632 (778)
Q Consensus 554 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~~~R~eWd~ls~g~~vqe~~~ia 632 (778)
..+|... .. ..++|.|.+|... | .|-+ .++...+++||..||++| .|...|.+||..+.. ++.+-.+
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 4489976 32 2238999999863 3 2323 555567799999999865 588999999975432 3344444
Q ss_pred cCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCC--cccccCCceecCCC
Q 004026 633 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 706 (778)
Q Consensus 633 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 706 (778)
+....|--...... . -...+.+.++- +....+.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~-~~~~~~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRH-WGIRENCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEE-EEecCCeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 23334433222211 1 13456666665 3332355544 333443321 112333 45788999998854
No 72
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.06 E-value=5.1 Score=41.13 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhc--ccc
Q 004026 535 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 612 (778)
Q Consensus 535 l~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd--~~~ 612 (778)
=++.|.|..-|... ++|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~~------~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYINDT------DGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcCc------CCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 34555566555522 789977 3 3578999998643211 2 2346777789999999999999 899
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCC
Q 004026 613 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 688 (778)
Q Consensus 613 R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~ 688 (778)
|.+||.... ..+.+.+| ++.+.|........ . -...+.+.+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999996432 34555555 33444433322111 1 23456766763222223555544 22333321 11
Q ss_pred CCCCc--ccccCCceecCC
Q 004026 689 DSAYV--ALLPSGFAIVPD 705 (778)
Q Consensus 689 d~~~v--~lLPSGF~I~Pd 705 (778)
-+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 23333 357888888873
No 73
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=94.02 E-value=0.5 Score=50.24 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=49.1
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
..++|..- ...++|+|.++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~---~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA---SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE---EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46799865 3468999999873 1255555555589999999999999999999997 33345555555
No 74
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=93.85 E-value=4.3 Score=42.17 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=82.8
Q ss_pred HHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHH-hhhccccchhh
Q 004026 538 AQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEW 616 (778)
Q Consensus 538 a~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~-FLrd~~~R~eW 616 (778)
++-=+..|..-+.. .++|..- . ...++|+|.+++.. +. | .+-+.-+-+++|++.||+ .|.|...|.+|
T Consensus 10 ~~~~~~~~~~~l~~--~~~W~l~-~-~~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W 78 (209)
T cd08906 10 GKEALAVVEQILAQ--EENWKFE-K-NNDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLW 78 (209)
T ss_pred HHHHHHHHHHHhhc--ccCCEEE-E-ecCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhcccc
Confidence 33333444433333 3589854 2 12478999997652 21 2 344777778999999985 78999999999
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEeccc---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCC
Q 004026 617 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY 692 (778)
Q Consensus 617 d~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~d~~~ 692 (778)
|.-. ..++.+.+| ++.+.|. ..+... + -+..++.++.-.+-+..+..++...++.+.+ ...+.+
T Consensus 79 ~~~~--~~~~vi~~~----~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~ 146 (209)
T cd08906 79 NKTV--SACQVLQRV----DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKY 146 (209)
T ss_pred Cccc--hhhhheeec----cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCe
Confidence 9632 123334444 2334433 232221 1 2456777776544455554445554544432 223444
Q ss_pred c--ccccCCceecC
Q 004026 693 V--ALLPSGFAIVP 704 (778)
Q Consensus 693 v--~lLPSGF~I~P 704 (778)
| ...++||.|.|
T Consensus 147 VR~~~~~~G~~i~~ 160 (209)
T cd08906 147 VRGENGPGGFVVLK 160 (209)
T ss_pred EEEeeeccEEEEEE
Confidence 4 35899999998
No 75
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.80 E-value=1.9 Score=44.71 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=96.6
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhcc--ccchhhhhhcCCCCcceeee
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 630 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~--~~R~eWd~ls~g~~vqe~~~ 630 (778)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++++.||++|.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 3 347999999998554543 2 455666799999999999864 478999975432 333444
Q ss_pred cccCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--cccCCceecC
Q 004026 631 IAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAIVP 704 (778)
Q Consensus 631 ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~d~~~v~--lLPSGF~I~P 704 (778)
| +....|..++.... + -+..++++++-.-.+..|.+++.. -++-+.+ ...+..|- .-|+|+.+.|
T Consensus 89 i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~ 159 (208)
T cd08903 89 I----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEP 159 (208)
T ss_pred e----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 4 23333333322111 1 234567766643334556665544 2222111 11133332 4457777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 004026 705 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 705 dg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~ 775 (778)
-.. ..++|.+|.-+|+= |.-.|...-|.. +...+..+.+.++.+|+
T Consensus 160 ~~~---------------------~~~~t~v~~~~~~D----pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 160 VPG---------------------EPDKTQLVSFFQTD----LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCC---------------------CCCceEEEEEEEec----cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 110 01356666555543 333444434433 22334457777777764
No 76
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.68 E-value=1.8 Score=44.68 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeec-ccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wL-pv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
-..+|... . ..++|+|-.|...+ . |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~~---s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHPG---T--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccCC---C--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 34569877 3 35789998887632 1 222 45554545 699999999999999999999643 333333
Q ss_pred ccCCCCCceEEEEEecccC-CCCCceEEEEccccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CcccccCCceecCCC
Q 004026 632 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSA--YVALLPSGFAIVPDG 706 (778)
Q Consensus 632 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~s-gs~vVyA-PvD~~~m~~vm~G~d~~--~v~lLPSGF~I~Pdg 706 (778)
.+..+.++.|--.+....- -...+..+-+-...|.. +.++|.. -|+-+.. ..-+. .|..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 3322334444333333211 13345544443234543 3434432 1221110 01111 244567777777743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 004026 707 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~ 775 (778)
.. ..+|+-++.-++ . .|...+..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~--~--dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF--D--NPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE--e--CCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 11 114555554333 2 3444443322211 23334458888888864
No 77
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.50 E-value=3.5 Score=42.98 Aligned_cols=172 Identities=20% Similarity=0.303 Sum_probs=98.7
Q ss_pred CceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCC
Q 004026 556 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 635 (778)
Q Consensus 556 ~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia~g~ 635 (778)
+|..+ ...+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||...- .++.+..+
T Consensus 28 ~w~~~---~~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSY---STSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCccc---CCCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 78777 3467899999987 34555 667788888998888888777775 999997321 12333333
Q ss_pred CCCceEEEEEecccCCC-CCceEEEEccccC-CCCcEEEEee-cchhhhhhhhcCCCCCCcccccCCceecCCCCCCCCC
Q 004026 636 DHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP 712 (778)
Q Consensus 636 ~~gn~vsllr~~~~~~~-~~~~liLQes~td-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~ 712 (778)
++.+.|-=..++..-+- ..++.+++-..+| .-|++++... |+-+.+- .++ --+..+-+|+.|-|.|
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g------ 160 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCG------ 160 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECC------
Confidence 23333333333332232 3456665443333 5677777665 4433211 000 1122234444444421
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 004026 713 LANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 775 (778)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~tv~~li~~tv~~Ik~Al~ 775 (778)
+++|-||--.|+= |...+..=-+-....|++.-+.||++.+.
T Consensus 161 -----------------~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 161 -----------------SGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -----------------CCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 2567777654543 44444445555678899999999998764
No 78
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.49 E-value=0.034 Score=46.20 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhh
Q 004026 87 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 128 (778)
Q Consensus 87 Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 128 (778)
-++.|+++|...+++...+...|..+.+|+..||+-||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999997554
No 79
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.41 E-value=3.3 Score=43.22 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=95.0
Q ss_pred CCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 004026 555 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 634 (778)
Q Consensus 555 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia~g 634 (778)
.+|..+ ...+++.+..+|.. +|.| +=--++++=+|.||..|+..+-+ .|.+||.- +++---|.+-
T Consensus 27 k~w~~~---~~~~~~e~~ykK~~--d~~~---lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~-----~~~~~~ie~l 91 (205)
T cd08909 27 KGWISC---SSSDNTELAYKKVG--DGNP---LRLWKVSVEVEAPPSVVLNRVLR--ERHLWDED-----FLQWKVVETL 91 (205)
T ss_pred cCCccc---CCcCCeEEEEecCC--CCCc---eEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhh-----cceeEEEEEe
Confidence 478766 23578889999874 3445 33445688889677666555544 69999962 2222222221
Q ss_pred CCCCceEEEEEecccCCC-CCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCcccccCCceecCCCCCCCC
Q 004026 635 QDHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRG 711 (778)
Q Consensus 635 ~~~gn~vsllr~~~~~~~-~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~ 711 (778)
+..+.|=-..++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. .|+= -+.++=+||.|-|.|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC----
Confidence 22244444444433222 3455555542334 5776644 33344332111 1211 3455668888888332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 004026 712 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 775 (778)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~tv~~li~~tv~~Ik~Al~ 775 (778)
|+|.||---|+=.... +..=-+..+..|++.-+.||+..+.
T Consensus 163 -------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 -------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred -------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3566665444433333 2222444578888889999998764
No 80
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.82 E-value=0.75 Score=48.93 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=46.8
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 619 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~l 619 (778)
...++|..- ...++|+|-++. |. -+++-+.-+-+++|++.+|++|.|...|.+||..
T Consensus 53 a~~~~W~l~---~dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT---STVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE---EccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 346899865 346899999984 21 2678888888999999999999999999999974
No 81
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=92.66 E-value=1.2 Score=45.88 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCceeccCCCCCCc----eEEEEccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceee
Q 004026 555 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMA 629 (778)
Q Consensus 555 ~~W~~l~~~~~~~d----vrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~ 629 (778)
++|... .. .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 689987 43 344 888777652 21 2 33466677786 89999999999999999999643 3333
Q ss_pred ecccCCCCCceEEEEEecccC-CCCCceEEEEccccCCCCcEEEEe
Q 004026 630 HIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA 674 (778)
Q Consensus 630 ~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sgs~vVyA 674 (778)
-|....+.++.|--......= -...+..+....+.|.-++++|..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322324444333333211 233456555555566566666654
No 82
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.54 E-value=2.2 Score=43.14 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=80.3
Q ss_pred CCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhH-HHHhhhccccchhhhhhcCCCCcceeeecc
Q 004026 554 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 632 (778)
Q Consensus 554 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~-vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia 632 (778)
.++|... .+ +.+++.+..+...+ |. .+-..++...++.+++. +.++|.|...|.+||..... ++.+-.+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679977 43 23444444444321 11 36688899999988875 66899999999999975432 33334442
Q ss_pred cCCCCCceEEEEEeccc--CCCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--ccccCCceecCCC
Q 004026 633 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 706 (778)
Q Consensus 633 ~g~~~gn~vsllr~~~~--~~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 706 (778)
.++.|-....+.. --...+.+++.-...|..++++|.+ -++-+.. ...+..| .++++||.|-|.+
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 2344444333221 1233577777765556777766654 5554431 1123333 5899999999944
No 83
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=91.03 E-value=4.4 Score=42.20 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcC
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSN 621 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~ 621 (778)
-..++|..- . ..+||.|..+++...+|.- - .+---++.-|+.|+||+.+..+|.+||....
T Consensus 20 ~~~~~Wkl~-k--~~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 20 ILEEEWRVA-K--KSKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred ccccCcEEE-E--eCCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 367799866 3 3489999999885445431 1 1111227888999999999999999997543
No 84
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=90.86 E-value=7 Score=41.57 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCC-----Cc-eEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHh
Q 004026 533 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD-----ED-VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 606 (778)
Q Consensus 533 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~-----~d-vrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~F 606 (778)
-++.||..-+..|- .+.-.+.-.|.+. .+.+. |. .+++.+.. .+..+...+..+-++-.+.+.|..|.++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~-~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKS-PGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceec-CCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 47899999999998 4445556789987 44321 22 22222221 1111234577888999999999999999
Q ss_pred hhccccchh-hhhhcCCCCcceeeecccCCCCCceEEEEEecccC----CCCCceEEEEccccCCCCcEEEEe-ecchhh
Q 004026 607 LRDERLRSE-WDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYA-PVDIPA 680 (778)
Q Consensus 607 Lrd~~~R~e-Wd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~~----~~~~~~liLQes~td~sgs~vVyA-PvD~~~ 680 (778)
|.|..++.+ .+-.+.-..+-++..=..|.+.+..+.|+..+-.- ..-.+..+|.-|+--.-|..+|-- .+|...
T Consensus 79 lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~ 158 (229)
T cd08875 79 LMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ 158 (229)
T ss_pred HhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc
Confidence 999555555 33343333333333322233456678887755211 124689999975556788776643 344211
Q ss_pred hhhhhcCCCCC---CcccccCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccc
Q 004026 681 MHVVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 751 (778)
Q Consensus 681 m~~vm~G~d~~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l 751 (778)
+..-+. .--.+||||-|=|- .+|+|.+|+-=++-++..+.-.+
T Consensus 159 -----~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 -----TAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred -----cCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 111122 23489999999771 12578888877777765443333
No 85
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.52 E-value=1.4 Score=46.54 Aligned_cols=61 Identities=30% Similarity=0.315 Sum_probs=37.5
Q ss_pred hhhhhhHHHHHHHHHh--hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHH
Q 004026 124 FQNRRTQMKTQLERHE--NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 198 (778)
Q Consensus 124 FQNRRaK~Kkk~~r~e--~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r 198 (778)
-||-|-|.|.+..+.+ -..|..+|++|+.||++|++..++. -.+.++|+.+...|++||..
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L--------------~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL--------------LAKNHELDSELELLRQELAE 143 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHh
Confidence 4666777665554443 3456778888888888888766532 23455566666666666543
No 86
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=90.39 E-value=7.2 Score=39.30 Aligned_cols=150 Identities=19% Similarity=0.312 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhh
Q 004026 537 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 616 (778)
Q Consensus 537 La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eW 616 (778)
|+.+.+..|.. ......++|... .+ .++..+.+++... +.+ ..+...++..-++.++..+|..|.+... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~-~~--~~~~~~~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLY-KD--KKNGDVYYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEE-EE--ETTTCEEEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEe-Ec--cCCCeEEEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 55556666663 335677799988 42 2333333444321 111 1356788889999888877777777444 99
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEecccC--C-CCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCCCCCC
Q 004026 617 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN--A-NQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 692 (778)
Q Consensus 617 d~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~~--~-~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~d~~~ 692 (778)
|.... .++.+-.| +++..|.....+..- + ...+.++++-...+..|+++|. ..||.+..... .+..
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 97543 23333333 233555555444322 2 2356677765444566765554 57877764322 2334
Q ss_pred c--ccccCCceecCC
Q 004026 693 V--ALLPSGFAIVPD 705 (778)
Q Consensus 693 v--~lLPSGF~I~Pd 705 (778)
| -+++|||.|-|.
T Consensus 143 VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 143 VRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEESEEEEEEEE
T ss_pred ceeeeeeEeEEEEEc
Confidence 4 389999999984
No 87
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.25 E-value=1.1 Score=42.56 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCCCHHHHH-HHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhh
Q 004026 80 YHRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 125 (778)
Q Consensus 80 RtrfT~~Ql~-~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 125 (778)
|.+||.++.. .+...+.. .....++|+++|+++.++..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~-----g~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEP-----GMTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcC-----CCCHHHHHHHHCcCHHHHHHHHH
Confidence 3457877644 44444432 22467789999999999999954
No 88
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=89.90 E-value=2.3 Score=41.07 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhh-ccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHh
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L-gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 159 (778)
.+||.+++..+- -.+|=+.| |++...|--|=|-||+-.-+--........-++-+.|..++..|..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877651 23344444 7888888889898887654433333333333344455555555544
Q ss_pred hhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHH
Q 004026 160 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 199 (778)
Q Consensus 160 ~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~ 199 (778)
|..+|+.||++++.|++-.
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAY 107 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777643
No 89
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=87.16 E-value=3 Score=43.56 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=69.8
Q ss_pred cceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEee-eceecC-ceEEEEEEeccCccCCCCCCCccceeec
Q 004026 374 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 451 (778)
Q Consensus 374 ~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRy-c~q~~~-g~w~VvDvS~d~~~~~~~~~~~~~~~~~ 451 (778)
.++.+++...+. ++...+.|.+..+|-| +.+|+|..|.. +...+. ..++|+..+++...-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555544222 3356788888889988 89999999999 666652 67899999987542110112478887 6
Q ss_pred CCcceEeecCC---CccEEEEEEeeeeccc-cccc
Q 004026 452 PSGCVVQDMPN---GYSKVTWVEHAEYDES-QVHQ 482 (778)
Q Consensus 452 PSGclIq~~~n---G~skVtwVeH~e~d~~-~v~~ 482 (778)
=||..|+..|. +-.+|+|+==...|+. .+|.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 79999998885 4789999993344444 2543
No 90
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=86.81 E-value=6.6 Score=36.58 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecC
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 423 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~ 423 (778)
+-.+...+.++.++|.|.+.|.+-+|.+.. +++++.+ .... +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~----~~~~~~~-------~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCES----LEKIGPN-------EYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhh----ccccCCC-------eEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 445677889999999999999999998753 4555421 1111 111111 232 2232223455443334
Q ss_pred ceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 004026 424 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 488 (778)
Q Consensus 424 g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 488 (778)
..+++.-..... .. + ...=--+-+.+. +|.++|||.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 444443221110 00 1 111122346777 5679999999999653 3444455554
No 91
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=86.65 E-value=4.7 Score=43.05 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=43.3
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 619 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~l 619 (778)
...++|..- . ..++|+|.++.. +. +++-+.=+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~-~--~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLS-S--EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEE-E--ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 456689855 3 358999999543 11 234466677899999999999999999999974
No 92
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=86.16 E-value=1.3 Score=45.98 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=60.5
Q ss_pred CCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeee
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 630 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ 630 (778)
-.+.+|... . ..++|+|-.|... | ..+.--++...++ ++++.++++|.|...|.+||.... |+..
T Consensus 22 ~~~~~W~l~-~--~~~~i~Vy~r~~~---~---s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELL-V--ESSGISIYRLLDE---Q---SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEE-E--ecCCeEEEEeccC---C---CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 445679977 3 3578999988762 2 2244677788889 999999999999999999998532 2222
Q ss_pred cccCCCCCceEEEEEecccC-CCCCceEEEEc
Q 004026 631 IAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 661 (778)
Q Consensus 631 ia~g~~~gn~vsllr~~~~~-~~~~~~liLQe 661 (778)
. ..+++.|--.+....- -+..++++++.
T Consensus 88 ~---~~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K---ECDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e---cCCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1335555555444222 23456666654
No 93
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=85.50 E-value=11 Score=36.89 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=73.3
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 422 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~ 422 (778)
.+-+|.-.+..+-+++-|..+|-+.||.+ +-++|++.|..| -| .. ..++...+ ..+.-|.=|.+ +.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~~~--~~-~r---~~i~~~~~--g~~~~w~s~~~--~~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDGDT--VR-FR---LTMHPDAN--GTVWSWVSERT--LD 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecCCe--EE-EE---EEEEeccC--CEEEEEEEEEE--ec
Confidence 45677778999999999999999999876 456667654322 11 11 11122222 12222222433 23
Q ss_pred CceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 004026 423 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 502 (778)
Q Consensus 423 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~ 502 (778)
...|-|.=..+.. .+ + ..+=-...+++.++| |+|++..+++...-. .+.-+++....--.-..=+++
T Consensus 71 ~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 137 (146)
T cd08860 71 PVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMAR 137 (146)
T ss_pred CCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHH
Confidence 3334333112111 11 1 122223346888887 999999998865311 222233322222233445677
Q ss_pred HHHHHHH
Q 004026 503 LQRQCEC 509 (778)
Q Consensus 503 LqR~cer 509 (778)
|.+.+|+
T Consensus 138 Lk~~aE~ 144 (146)
T cd08860 138 IKKKIEA 144 (146)
T ss_pred HHHHhhh
Confidence 7777665
No 94
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=85.18 E-value=0.59 Score=55.83 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=43.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 88 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 88 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
...|..+|..|..|+..+-..+|.+.||+.+.||.||++++++...-
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 67889999999999999999999999999999999999999987643
No 95
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.16 E-value=12 Score=35.18 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=72.8
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCce-eEEEeeece
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQ 420 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re-~~fLRyc~q 420 (778)
|++-.|...+..+-++|.|.+.|.+.+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 346677788999999999999999998886 4455564321 121 1 1110 111 222333322
Q ss_pred ecCceEEEEEEeccCccCCCCCCCccceeec----C--Cc-ceEeecCC-CccEEEEEEeeeeccccccccchhhhccch
Q 004026 421 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SG-CVVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGM 492 (778)
Q Consensus 421 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~----P--SG-clIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~sg~ 492 (778)
++.++.... +.. ...+++.. + .| .-+++.++ |.+.|+|--|++... . ++-++++.-+
T Consensus 63 ------v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~ 127 (144)
T cd08866 63 ------VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVL 127 (144)
T ss_pred ------EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHH
Confidence 122211100 000 01111110 0 12 23578887 789999988777653 2 3336666656
Q ss_pred hHHHHHHHHHHHHHHH
Q 004026 493 GFGAQRWVATLQRQCE 508 (778)
Q Consensus 493 afGA~rwla~LqR~ce 508 (778)
-=+..+-++.|.++||
T Consensus 128 ~~~~~~~l~~lr~~ae 143 (144)
T cd08866 128 RQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6667778888887776
No 96
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=83.14 E-value=6.1 Score=41.63 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=77.8
Q ss_pred EechhhHHHHhcCh---hhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCc
Q 004026 348 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 424 (778)
Q Consensus 348 ~~~~~~LVe~lmD~---~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g 424 (778)
.+.|..+-+.|+|. .+|=.+ |.+-.||+.... .|+ +++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 45688999999995 599887 444455555441 222 78999999998875 5999999887777777
Q ss_pred eEEEEEEeccCccCCCCCCCccceeecCCcceEe-----ecCCC-ccEEEEEEe
Q 004026 425 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEH 472 (778)
Q Consensus 425 ~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq-----~~~nG-~skVtwVeH 472 (778)
.-+||-.|+....- |.....+|..-.=||.+|+ +-++| .|-++|.+|
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 77788777763211 1111257888889999999 55555 345555544
No 97
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=82.60 E-value=1.6 Score=35.73 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=34.4
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhh
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 127 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 127 (778)
||+|..+|-+|-..+=..++..+ ...++|+++|++..+|.-|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46778899888887777787765 57889999999999999999885
No 98
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.44 E-value=25 Score=32.41 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=71.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 422 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~ 422 (778)
.+..|...+.++.+.|.|.+.|.+.+|.+ +.++++..+.. |.-...+ +.+ ...+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 45677888999999999999999999985 34555654432 2211222 112 12244555556665432
Q ss_pred Cce--EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 004026 423 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 500 (778)
Q Consensus 423 ~g~--w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwl 500 (778)
... |-+.+. .. +.... .-.-+++.++ .|+|||.-+++..- .+ ...++....--+...-+
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-PL---PGFLKRKAEPLVLDEAL 133 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC-CC---CHHHHHHhhhHHHHHHH
Confidence 222 222111 01 11111 1255778877 59999999998754 23 33334333333444445
Q ss_pred HHHHHH
Q 004026 501 ATLQRQ 506 (778)
Q Consensus 501 a~LqR~ 506 (778)
..|.++
T Consensus 134 ~~l~~~ 139 (140)
T cd07819 134 KGLKKR 139 (140)
T ss_pred HhHhhh
Confidence 555443
No 99
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=80.44 E-value=10 Score=35.74 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=75.5
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 422 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~ 422 (778)
.+..|...+..+.+++-|.+.|.+.+|.+.+ .++++.+. ++ ..+++.+..|. -.|++. .|++- .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~----~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~--~ 66 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTA----SRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTL--V 66 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccc----cEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEe--c
Confidence 3556677788999999999999999988744 44555332 12 22223333332 244443 33332 1
Q ss_pred CceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 004026 423 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 502 (778)
Q Consensus 423 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~ 502 (778)
.+..+ -=.++++ . + ..+=--..+++.++|.|+|+|.-|++..-. ++.+|++.-+.=.+++-|.+
T Consensus 67 ~~~~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~ 130 (138)
T cd07813 67 PPESI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDA 130 (138)
T ss_pred CCCEE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHH
Confidence 23232 1112222 1 1 111223457889989999999999998733 33333332223336677888
Q ss_pred HHHHHHH
Q 004026 503 LQRQCEC 509 (778)
Q Consensus 503 LqR~cer 509 (778)
+.+.|++
T Consensus 131 f~~~~~~ 137 (138)
T cd07813 131 FEKRAKQ 137 (138)
T ss_pred HHHHHhh
Confidence 8777764
No 100
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.61 E-value=5.8 Score=35.35 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=44.4
Q ss_pred HHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH----HHhhhhhcc
Q 004026 132 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 206 (778)
Q Consensus 132 Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~----r~~~~~~~~ 206 (778)
|-++.-..-..|+-+.+.|+..|..+.++... .......|..||..||+|.. |++++++|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~--------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566778889999999999998887652 12234569999999999985 666666543
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.00 E-value=5.2 Score=35.08 Aligned_cols=51 Identities=35% Similarity=0.554 Sum_probs=36.5
Q ss_pred HHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH----HHhhhhhc
Q 004026 134 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 205 (778)
Q Consensus 134 k~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~----r~~~~~~~ 205 (778)
++.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++++|
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566788888888888888875 44578899999999875 45555544
No 102
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=78.61 E-value=16 Score=34.28 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.4
Q ss_pred eeEEEechhhHHHHhcChhhhhhhccc
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPC 370 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~ 370 (778)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456777899999999999999998776
No 103
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.04 E-value=3.8 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHhhhHHHHHhHHHHHhhHhHHh
Q 004026 135 LERHENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 135 ~~r~e~~~l~~en~~L~~en~~l~e 159 (778)
|.+.+...|++.++.|++++.+|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~ 26 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKK 26 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999998776553
No 104
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=77.54 E-value=93 Score=32.24 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhh-ccc
Q 004026 533 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 611 (778)
Q Consensus 533 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLr-d~~ 611 (778)
+-.++++.....|-.-.+ ...+|... . .+.++++|.++... +. | --.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~~--~~~~W~~~-~-~~~~gi~v~s~~~~---~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ--DQEGWKTE-I-VAENGDKVLSKVVP---DI--G--KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHhc--cccCCEEE-E-ecCCCCEEEEEEcC---CC--C--cEEEEEEEecCCHHHHHHHHHhchh
Confidence 344555555555554442 45689865 2 23567888886652 22 2 234556678999999996666 569
Q ss_pred cchhhhhhc
Q 004026 612 LRSEWDILS 620 (778)
Q Consensus 612 ~R~eWd~ls 620 (778)
.+.+|+..+
T Consensus 74 ~~~~W~~~~ 82 (209)
T cd08905 74 QMGEWNPNV 82 (209)
T ss_pred hhceecccc
Confidence 999999744
No 105
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=75.42 E-value=55 Score=30.18 Aligned_cols=134 Identities=9% Similarity=0.005 Sum_probs=71.7
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecC
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 423 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~ 423 (778)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. .+. . +.+-.|....+++ ..+++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~------~~~-~-----~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD------TRS-H-----WKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC------Cce-E-----EEEecCCCCcEEE-EEEEec-cCC
Confidence 4456667889999999999999999865 33455531 111 1 1111232333443 345544 344
Q ss_pred ceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 004026 424 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 503 (778)
Q Consensus 424 g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~L 503 (778)
+..++.. ..++.. . ....++ +++.++|.++||+--|.+......-.++-+++....-=..+.+|..|
T Consensus 67 ~~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 67 NERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred CCEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 4443322 222211 1 111222 46777778999999999877533333444444433333445556666
Q ss_pred HHHHH
Q 004026 504 QRQCE 508 (778)
Q Consensus 504 qR~ce 508 (778)
.+++|
T Consensus 134 k~~aE 138 (139)
T cd07817 134 KQLVE 138 (139)
T ss_pred HHHhh
Confidence 55544
No 106
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=74.21 E-value=9.4 Score=40.54 Aligned_cols=63 Identities=17% Similarity=0.421 Sum_probs=47.4
Q ss_pred cccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEE-EEEEEeecc-cChhHHHHhhhccccchhhhhh
Q 004026 549 VCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 619 (778)
Q Consensus 549 v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~l 619 (778)
.-+-..++|... . ..++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 20 ~~~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 20 LEDVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred HccCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 334556689976 3 35789999987632 2 2332 367777889 9999999999999999999973
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.47 E-value=4.3 Score=44.32 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=26.8
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 139 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 139 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
+...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 334566777777777776655443 123348888888888654
No 108
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=73.36 E-value=62 Score=29.55 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=69.1
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecC
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 423 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~ 423 (778)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++... . +.+. -+|.. +++
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~ 68 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDD 68 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCc
Confidence 3457778899999999999999887754 4555555332 134432222110 0 1111 11111 112
Q ss_pred ceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 004026 424 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 503 (778)
Q Consensus 424 g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~L 503 (778)
+.-.|. ..+... ..+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..|+.|
T Consensus 69 ~~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 69 AERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred cCCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHH
Confidence 100111 111110 001 0111123557788887899999999887755 334444444444455566666
Q ss_pred HHHHH
Q 004026 504 QRQCE 508 (778)
Q Consensus 504 qR~ce 508 (778)
.++||
T Consensus 136 ~~~~~ 140 (140)
T cd07821 136 KAALE 140 (140)
T ss_pred HHhhC
Confidence 66553
No 109
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=73.34 E-value=2.7 Score=53.63 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=70.6
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHh
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMS 156 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~ 156 (778)
+-.+++++.-|...|...|+...||.-.++..++.-|++..|.+-.|||++++++.+...+.. +...
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~a-------------rg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLA-------------RGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccc-------------cccc
Confidence 445778999999999999999999999999999999999999999999999988885443321 1112
Q ss_pred HHhhhcCCCCCCCCCCCcc-CCCChhHHH
Q 004026 157 IRDAMRNPICTNCGGPAII-GDISLEEQH 184 (778)
Q Consensus 157 l~e~~~~~~C~~Cg~~~~~-~~~~~~~~~ 184 (778)
..---...-|-.|...+.. +.++...+.
T Consensus 512 ~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 2222233458888888754 555544443
No 110
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=72.57 E-value=77 Score=28.95 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=26.9
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 382 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls 382 (778)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4567788999999999999999887765 4556665
No 111
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.09 E-value=13 Score=32.50 Aligned_cols=60 Identities=32% Similarity=0.445 Sum_probs=39.4
Q ss_pred HHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHH----HHHhhhhhcc
Q 004026 133 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 206 (778)
Q Consensus 133 kk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el----~r~~~~~~~~ 206 (778)
-++.-..-..|+-+.+.|+.+|..|..+..+ .......|..||..||+|- +|++++++|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~--------------~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445566777888888888877665431 1223446889999999986 4677766553
No 112
>PRK10724 hypothetical protein; Provisional
Probab=70.28 E-value=66 Score=32.06 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=79.7
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeecee
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 421 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~ 421 (778)
+.+.+|.-.+.++.+.+.|.++|-+.+|.. +..+|+.... ++ +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 456788889999999999999999887765 4555565432 12 456665533332 33333333332
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 501 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 501 (778)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--++|+.. .||.+++....--.|++-+.
T Consensus 83 ~~~-~I~~-~~~~G----p-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecCC----C-------hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHH
Confidence 333 3333 22222 2 123333334677887789999998888654 34444453333444667777
Q ss_pred HHHHHHHHH
Q 004026 502 TLQRQCECL 510 (778)
Q Consensus 502 ~LqR~cerl 510 (778)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 776556554
No 113
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=69.16 E-value=75 Score=28.94 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=70.0
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecC
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 423 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~ 423 (778)
+..|...+.++-++|.|.++|.+-.|.+ ..+++++.+.. ..|+.-.+...+ -+.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~--~~g~~~~~~~~~------~g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPV--GVGTRYHQVRKF------LGRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCC--cCccEEEEEEEe------cCceEEEEEEEEEecCC
Confidence 4456778899999999999999998876 35666654432 224322222111 01111122344432222
Q ss_pred ceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 004026 424 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 503 (778)
Q Consensus 424 g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~L 503 (778)
..+. ... .. +.. . +.. =+-+++.++| |+|+|-.+++. ..+..++.+++...+.=+-++++..|
T Consensus 72 ~~~~-~~~-~~----~~~-~-~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (140)
T cd08865 72 RRVV-FRG-SS----GPF-P-YED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENL 134 (140)
T ss_pred cEEE-EEe-cC----CCc-c-eEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2221 111 11 110 0 111 1335677665 99999998876 33334555555544444455666666
Q ss_pred HHHHH
Q 004026 504 QRQCE 508 (778)
Q Consensus 504 qR~ce 508 (778)
.+.+|
T Consensus 135 k~~~e 139 (140)
T cd08865 135 KALLE 139 (140)
T ss_pred HHHhh
Confidence 55544
No 114
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.09 E-value=6.7 Score=42.22 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=25.2
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 139 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 139 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
....+++||++|++|+..++..+. +.++|+.||.+||+.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhc
Confidence 344566666666666666665443 34467778877777543
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.82 E-value=16 Score=45.34 Aligned_cols=57 Identities=28% Similarity=0.361 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhhh
Q 004026 142 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 204 (778)
Q Consensus 142 ~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~~ 204 (778)
.++..++.|..+..-|+.+|.+. |..+.+..+.+-.||..+|+|||+-|-|++.+.+
T Consensus 336 ~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34445556666666678888875 3344444578999999999999999998876643
No 116
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.72 E-value=49 Score=31.31 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=31.4
Q ss_pred EeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 457 VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 457 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
+++. +|.|+|+|..+.++.-.....++.+++...+.=...+.|..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999887755444455555544333334555666655554
No 117
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=65.50 E-value=14 Score=33.58 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=35.4
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhh
Q 004026 143 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 143 l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
+.++++.|..|.+-|++.+. ..++.-+...||.+|++|+.|+..+-
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778777777664 34677788999999999999988653
No 118
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=63.63 E-value=1.6 Score=37.30 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehh
Q 004026 78 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 124 (778)
Q Consensus 78 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 124 (778)
++|++||+++...+=..+. .......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeecccccccccccHHH
Confidence 4567899988776655551 123567889999999999999884
No 119
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=61.14 E-value=18 Score=42.58 Aligned_cols=20 Identities=45% Similarity=0.685 Sum_probs=16.3
Q ss_pred hHHHhhhhhhhHHHHHHHHh
Q 004026 181 EEQHLRIENARLKDELDRVC 200 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~ 200 (778)
|.++|+.||+.||++|.-+.
T Consensus 317 Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHhhhHHHHHHHHHHh
Confidence 67788899999999887643
No 120
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=59.89 E-value=30 Score=42.38 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=81.6
Q ss_pred CCCCCceeccCCCCCCceEEEEccC-CCCCCCCCccEEEEEEEeecccChhHHHHhhhccc-cchhhhhhcC-CCCccee
Q 004026 552 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSN-GGPMQEM 628 (778)
Q Consensus 552 s~~~~W~~l~~~~~~~dvrv~~r~~-~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~-~R~eWd~ls~-g~~vqe~ 628 (778)
+....|.-+.. ..++||+-.-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||.... |.-++++
T Consensus 195 ~~~~~Wr~~~c---~NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I 269 (719)
T PLN00188 195 FSRKHWRLLQC---QNGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV 269 (719)
T ss_pred cccCCeEEEEe---eccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe
Confidence 45556665522 23567664332 111111122222 333346789999999997444 9999997533 3323333
Q ss_pred eecccCCCCCceEEEEEeccc----CCCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCCc--ccccCCce
Q 004026 629 AHIAKGQDHGNCVSLLRASAI----NANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFA 701 (778)
Q Consensus 629 ~~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~ 701 (778)
+...+|.--++... --...+..++.--.-+.-|+|++ |-.|.-+.- +--+.+| -+-|+||.
T Consensus 270 -------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwi 337 (719)
T PLN00188 270 -------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC-----GPQPGFVRAHLESGGFN 337 (719)
T ss_pred -------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEE
Confidence 33445553333210 12235666666533356777766 444544321 0002222 36799999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhcc
Q 004026 702 IVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 744 (778)
Q Consensus 702 I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~ 744 (778)
|.|--... ...+|+||--+|+=..
T Consensus 338 IsPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 338 ISPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EEECCCCC-------------------CCCceEEEEEEEEccC
Confidence 99932210 0146888877776543
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.94 E-value=17 Score=42.33 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhh
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 161 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~ 161 (778)
.+++++++.|.-. --.|...-|.-.++-- -.+.+-+....+|..|++||++|+.....+.+.+
T Consensus 41 ~ltpee~kalGie---gDTP~DTlrTlva~~k--------------~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 41 ELSPEELKALGIE---GDTPADTLRTLVAEVK--------------ELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred cCCcchhHhcCCC---CCCccchHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4677776666432 2334444444433221 1222223344455555555555555444333333
Q ss_pred cCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhh
Q 004026 162 RNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 202 (778)
Q Consensus 162 ~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~ 202 (778)
.+. +.-+.++|..|-..|++|++++...
T Consensus 104 ~~a-------------v~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 104 QQA-------------VQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHH-------------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 211 1123344555555555555554443
No 122
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.32 E-value=13 Score=37.74 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=6.2
Q ss_pred hHHHhhhhhhhHHHHHHHHh
Q 004026 181 EEQHLRIENARLKDELDRVC 200 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~ 200 (778)
|+..|++|++|||||+..+.
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776544
No 123
>smart00338 BRLZ basic region leucin zipper.
Probab=50.34 E-value=61 Score=27.27 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=25.8
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHH
Q 004026 137 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 196 (778)
Q Consensus 137 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el 196 (778)
+..-..|..+...|..+|..|+..+ .+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 4444556777777777777776533 35677777777764
No 124
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.49 E-value=41 Score=35.71 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHH
Q 004026 130 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 199 (778)
Q Consensus 130 K~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~ 199 (778)
|.|-+...+++..|..+++.|.++...++++++ +|+.||++|.++++++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l 189 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhc
Confidence 334445556666777777777777776666554 5778888888777654
No 125
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.46 E-value=45 Score=26.71 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhh
Q 004026 142 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 202 (778)
Q Consensus 142 ~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~ 202 (778)
++..+++.|+..-..|+. +-..|..||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~---------------------~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKA---------------------EYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888887777765 3345778888888888776654
No 126
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=47.20 E-value=30 Score=38.58 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=50.2
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhh
Q 004026 123 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 202 (778)
Q Consensus 123 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~ 202 (778)
||=-=|-|.| +.+-...+.|+....++.+.++-|++--+ ...+...|.++|+.+|..|+.||-++..+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7755444443 44566778888888888888776664211 11234567789999999999999888877
Q ss_pred hhccc
Q 004026 203 AGKFL 207 (778)
Q Consensus 203 ~~~~~ 207 (778)
..|.-
T Consensus 122 f~k~k 126 (401)
T PF06785_consen 122 FMKTK 126 (401)
T ss_pred HHHhc
Confidence 65543
No 127
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.31 E-value=25 Score=39.10 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=15.6
Q ss_pred HhhhHHHHHhHHHHHhhHhHHhhh
Q 004026 138 HENSLLRQENDKLRAENMSIRDAM 161 (778)
Q Consensus 138 ~e~~~l~~en~~L~~en~~l~e~~ 161 (778)
.++..||+||++|+.||..|+.++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHH
Confidence 355667777777777777666544
No 128
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=45.93 E-value=20 Score=40.29 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=26.6
Q ss_pred HhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 138 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 138 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
.....+++||+.|+.||..|+.++. +.+.++.||++|++.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 3345566777777777777766553 34456678887776543
No 129
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=45.47 E-value=42 Score=36.76 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 137 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 137 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
-.+...+..+|+.|++++.++.+... +.+.|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhC
Confidence 34444555666666666655554332 45567777777777543
No 130
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.99 E-value=60 Score=37.46 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeeec
Q 004026 280 SMFLELALAAMDELVKMAQTDEPLWIRS 307 (778)
Q Consensus 280 ~~~~~lA~~Am~El~~la~~~~plWi~~ 307 (778)
..|++ |..||.|+..+.+..---|.+.
T Consensus 397 ~kIle-ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 397 HKILE-AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 7789999888877777778774
No 131
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.63 E-value=20 Score=28.35 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=14.9
Q ss_pred HhhhhhhhHHHHHHHHhhh
Q 004026 184 HLRIENARLKDELDRVCAL 202 (778)
Q Consensus 184 ~L~~EN~~Lk~el~r~~~~ 202 (778)
.|..||.||+.|++.++++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677888888888887764
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.98 E-value=1e+02 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHh
Q 004026 137 RHENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 137 r~e~~~l~~en~~L~~en~~l~e 159 (778)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777666665
No 133
>PF15058 Speriolin_N: Speriolin N terminus
Probab=43.24 E-value=32 Score=35.64 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=29.8
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhh
Q 004026 140 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 201 (778)
Q Consensus 140 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~ 201 (778)
+.-++.++++|-.||.+||+..+ |..||++||.-|-..+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 34467777888888888887554 78899999987766554
No 134
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=42.64 E-value=73 Score=35.10 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 134 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 134 k~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
+++|.+...+-.+.+.|..+|.+||+. ..+|..|..+||+=+.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~q---------------------a~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQ---------------------ASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 345666667777888888888888763 3456667777776544
No 135
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=42.53 E-value=36 Score=36.07 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=91.8
Q ss_pred cCCCCCceeccCCCCCCceEEEE-ccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 004026 551 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 628 (778)
Q Consensus 551 ~s~~~~W~~l~~~~~~~dvrv~~-r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~ 628 (778)
+-.+.+|..+ - ...+++|.. |.- +.| | =.+.|- .-+. ++|..|+||+-|..-|.+||...- ++
T Consensus 25 ~~~~~~We~~-~--~k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi-----~~ 89 (219)
T KOG2761|consen 25 CDAGQGWELV-M--DKSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDMVI-----EL 89 (219)
T ss_pred cCcccchhhh-c--ccCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHHhh-----hh
Confidence 5677899987 2 245677766 332 223 3 123333 3467 999999999999999999998421 11
Q ss_pred eecccCCCCCceEEEEEecccCCCCCceEEEEccccCC--CCcEEEEeecchhhhhhhhcCCCCCCcccccCCceecCCC
Q 004026 629 AHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDA--AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 706 (778)
Q Consensus 629 ~~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~td~--sgs~vVyAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg 706 (778)
--|..-...||-|-=-..+-.-+-.+--++++-.+.+. -..+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 90 e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~--- 163 (219)
T KOG2761|consen 90 ETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIR--- 163 (219)
T ss_pred eeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEE---
Confidence 11111111233222111111111122334444434332 122222211222211 0000112334556787776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 004026 707 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li~~tv~~Ik~Al~ 775 (778)
-+...+ ...||-.+ +++-.+|...+..+-|.- ++..+-..|.++-.|+.
T Consensus 164 ~~~~~~----------------~~~~~~~~----~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 164 VESRSG----------------DEQGCACE----YLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred cccccC----------------CCCccEEE----EEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 111100 11233333 344457888887776665 78888889999988874
No 136
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.35 E-value=2.5e+02 Score=26.67 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred EEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceecCce
Q 004026 346 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 425 (778)
Q Consensus 346 ~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~~g~ 425 (778)
.+...+.++-+++.|.+.|-+-.|.+ +.+++++.+.....+...+. .. ....|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~~-~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRRY-TW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEEE-EE-----EecCCcEEEEEEEEEeecCCcE
Confidence 45567889999999999999988865 56666663221121222221 11 1112222223344444334445
Q ss_pred EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc---cccccchhhhccc
Q 004026 426 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLIISG 491 (778)
Q Consensus 426 w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~l~rpl~~sg 491 (778)
+++. . ++. . ....+ +-|++-++ +|+||+-.+++..-- ..+.++.+++...
T Consensus 78 ~~~~-~--~g~---~--~~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~ 130 (146)
T cd07824 78 LEVR-A--SGD---L--EGVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWN 130 (146)
T ss_pred EEEE-E--EEe---e--eEEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHh
Confidence 5442 2 211 0 00111 23666555 499999888887542 3455555555433
No 137
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.72 E-value=50 Score=31.20 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=13.8
Q ss_pred hHHHhhhhhhhHHHHHHHHhh
Q 004026 181 EEQHLRIENARLKDELDRVCA 201 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~~ 201 (778)
+..+|++||+.||+.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777666543
No 138
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.40 E-value=43 Score=30.70 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.9
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 455 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 455 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
+.+.+.++|.|+|+|..... .....++.+++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864222 1122345666777777788888999988876
No 139
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=39.96 E-value=1.6e+02 Score=26.67 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhh
Q 004026 129 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 202 (778)
Q Consensus 129 aK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~ 202 (778)
.+.++..-+++-..|+.....=..-+..|..++....++-+. .+..++...+.|..|.|.|..|+.++...
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~---~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPS---SPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC---ccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777778877777667777777777765544333 33345667888999999999988776543
No 140
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.20 E-value=3.4e+02 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.8
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccc
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCM 371 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 371 (778)
.+-.|...+..+-+.|.|.+.|..-+|++
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34567788999999999999999988875
No 141
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.20 E-value=15 Score=35.12 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.6
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 004026 592 TSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 592 tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
-++.+|.||++||+||.|......|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 142
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=38.41 E-value=9.2 Score=45.35 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=38.4
Q ss_pred cCCCCCCCHHHHHHH-HHHhhhCCCCCHHHHHHHHHhhc-------cccceeeehhhhhhhHHHHHHH
Q 004026 77 KKRYHRHTPQQIQEL-ESLFKECPHPDEKQRLELSKRLC-------LETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 77 rr~RtrfT~~Ql~~L-E~~F~~~~~Ps~~~R~~LA~~Lg-------Ls~rQVkvWFQNRRaK~Kkk~~ 136 (778)
||++.+|-.+|..++ +..|-+++.++.....+--+++. .+.+.|++||.|||+++|+-+.
T Consensus 692 k~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k~ 759 (769)
T KOG3755|consen 692 KKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLKM 759 (769)
T ss_pred HHHHHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhhc
Confidence 333334444444433 44567777787776666555553 3567899999999999986543
No 143
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.20 E-value=30 Score=32.38 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=22.0
Q ss_pred eeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhh
Q 004026 119 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 161 (778)
Q Consensus 119 QVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~ 161 (778)
+...||++.=- .+-.+.+++...+++++++++.+|..|++++
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678865411 1111234445556666777666666655433
No 144
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=37.76 E-value=69 Score=34.85 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=14.9
Q ss_pred hHHHhhhhhhhHHHHHHHHhhhhhc
Q 004026 181 EEQHLRIENARLKDELDRVCALAGK 205 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~~~~~~ 205 (778)
|.+.|+.++.+|++|+..++.+...
T Consensus 230 en~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 230 ENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666777777766655433
No 145
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.49 E-value=86 Score=27.33 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=14.0
Q ss_pred hHHHhhhhhhhHHHHHHHH
Q 004026 181 EEQHLRIENARLKDELDRV 199 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~ 199 (778)
+..+|+.||..|++||+..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567888888888887654
No 146
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=37.46 E-value=2.3e+02 Score=33.28 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHH-hhh-CCCCCHHHHHHHHHhhccccceeeehhhhhhhHH-HHHHHHHhhhHHHHHhHHHHHhhHh
Q 004026 80 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM-KTQLERHENSLLRQENDKLRAENMS 156 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~-F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~-Kkk~~r~e~~~l~~en~~L~~en~~ 156 (778)
--++|.+....|.+. |-. ..+|.-+.-+++-++. +-=..|+|.+. +|++++.--..|......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 456888888888765 322 3355555555544444 11122433322 2222222222344444555556666
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhhh
Q 004026 157 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 204 (778)
Q Consensus 157 l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~~ 204 (778)
|++ +.++|..+|.-|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 554 667899999999999998876654
No 147
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.11 E-value=66 Score=30.61 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.1
Q ss_pred hHHHhhhhhhhHHHHHHHH
Q 004026 181 EEQHLRIENARLKDELDRV 199 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~ 199 (778)
+..+|++||..||+.|.++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4557888888888877765
No 148
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.15 E-value=30 Score=31.92 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=26.9
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
....|+.++.||..||++|.|.....+|.-
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 345789999999999999999999999985
No 149
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.77 E-value=39 Score=26.67 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhh
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 126 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 126 (778)
.+++.|...|...|-+ ...-.++|..+|++...|+.+...
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~~~ 43 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRILKR 43 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHHHH
Confidence 4788899999998833 234678999999999988876543
No 150
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.77 E-value=25 Score=32.13 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.9
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
..++-++.||..||++|.|-.+..+|..
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3577789999999999999999999974
No 151
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=34.61 E-value=39 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.2
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
...++-++.||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 34677889999999999999999999964
No 152
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.64 E-value=1.9e+02 Score=28.48 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=33.4
Q ss_pred hhhhhhhHHH--HHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHh
Q 004026 123 WFQNRRTQMK--TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 200 (778)
Q Consensus 123 WFQNRRaK~K--kk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~ 200 (778)
+-||-|.|-- |.+.+.++..|.++.++|+.||.+++ .|...+|..++++.
T Consensus 64 YA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~----------------------------~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 64 YAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR----------------------------RELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHH
Confidence 4456566533 22334566667777777777766544 56677888888877
Q ss_pred hhh
Q 004026 201 ALA 203 (778)
Q Consensus 201 ~~~ 203 (778)
..+
T Consensus 116 ~~~ 118 (135)
T KOG4196|consen 116 NSA 118 (135)
T ss_pred hhh
Confidence 654
No 153
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=33.23 E-value=81 Score=34.31 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHHhhhhhhhHHHHHHHHhhhhhc
Q 004026 182 EQHLRIENARLKDELDRVCALAGK 205 (778)
Q Consensus 182 ~~~L~~EN~~Lk~el~r~~~~~~~ 205 (778)
...|..||+.|+.+++.+.....+
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666655554443
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.17 E-value=2.4e+02 Score=29.64 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHHhHHHHHhhHhHHhhh
Q 004026 143 LRQENDKLRAENMSIRDAM 161 (778)
Q Consensus 143 l~~en~~L~~en~~l~e~~ 161 (778)
..+....|+.+|++|++++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455666666665544
No 155
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=32.70 E-value=59 Score=32.20 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
..+|+.|.+.|+..++. ....++|..||++...|+.|-++.+.|.|+
T Consensus 5 ~~Lt~rqreVL~lr~~G------lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRERG------LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999874322 346789999999999999998765555553
No 156
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=32.16 E-value=35 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 456789999999999999999999997
No 157
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.14 E-value=1.2e+02 Score=35.68 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=38.1
Q ss_pred eehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 121 KFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 121 kvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
.-=|-.+..+.+-.+.+.....|.+++++|+.|...+..... +.....+.|..||++|+++++
T Consensus 59 ~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 59 DTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556556666677777888888777664433322 112234467788888888874
No 158
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.33 E-value=30 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEEEeecccChhHHHHhhhccccchhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEW 616 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eW 616 (778)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 159
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.20 E-value=36 Score=31.42 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
..++-++.|++.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 160
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=31.16 E-value=28 Score=26.32 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 130 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 130 (778)
.+++.+...++..|... ..-.++|..+|++...|+.|...-+.+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~~ 53 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALKK 53 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46788888888777422 346778999999999999887654443
No 161
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.07 E-value=27 Score=32.39 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
..++-++.||++||+||.|.....+|..
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 3567789999999999999999999984
No 162
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.99 E-value=71 Score=34.97 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=31.4
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhH-HHhhhhhhhHHHHHHHHhhhh
Q 004026 143 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 143 l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~-~~L~~EN~~Lk~el~r~~~~~ 203 (778)
.-.....+++||++|++++. +. +++....+.|++|.+|++.++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466778999999998774 22 455555666899999988765
No 163
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.88 E-value=33 Score=32.18 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.7
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
.+++.++.||..||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 4689999999999999999999999974
No 164
>PF15392 Joubert: Joubert syndrome-associated
Probab=30.76 E-value=2.6e+02 Score=31.28 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=12.2
Q ss_pred HHhhHhHHhhhcCCCCCCCC
Q 004026 151 RAENMSIRDAMRNPICTNCG 170 (778)
Q Consensus 151 ~~en~~l~e~~~~~~C~~Cg 170 (778)
.....++++.=++++|+.-.
T Consensus 75 l~qlaEkR~qEH~PF~p~~~ 94 (329)
T PF15392_consen 75 LKQLAEKREQEHKPFCPRSN 94 (329)
T ss_pred HHHHHHHHhhccCCCCCCCC
Confidence 33344455556788897665
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.85 E-value=1.2e+02 Score=35.69 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=10.4
Q ss_pred hHHHhhhhhhhHHHHHHHHh
Q 004026 181 EEQHLRIENARLKDELDRVC 200 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~ 200 (778)
+.++|..|-++|+..|+.+.
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 166
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.10 E-value=60 Score=26.89 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhhhCCC--CCHHHHHHHHHhhcccccee
Q 004026 83 HTPQQIQELESLFKECPH--PDEKQRLELSKRLCLETRQV 120 (778)
Q Consensus 83 fT~~Ql~~LE~~F~~~~~--Ps~~~R~~LA~~LgLs~rQV 120 (778)
+|+.|.+.|...|+..-| |-...-.+||++||+++.-+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 588999999999987644 66667789999999998653
No 167
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=28.25 E-value=43 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345788899999999999999999999984
No 168
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=27.89 E-value=37 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
..|+-++.||+.||++|.|..+-++|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577889999999999999999999963
No 169
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.84 E-value=1.1e+02 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhhhcC
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWDILSN 621 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~ 621 (778)
...|.-++.||++||+++.|.....+|.....
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 45677889999999999999999999986443
No 170
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.81 E-value=44 Score=31.35 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.5
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 004026 592 TSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 592 tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
.+.-++.||++||++|-|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 46667899999999999999999997
No 171
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.75 E-value=1.9e+02 Score=25.15 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=9.6
Q ss_pred HHHHhHHHHHhhHhHHh
Q 004026 143 LRQENDKLRAENMSIRD 159 (778)
Q Consensus 143 l~~en~~L~~en~~l~e 159 (778)
|-..++.|+.||..|++
T Consensus 12 Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 12 LLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455556666666655
No 172
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=27.43 E-value=53 Score=33.60 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 164 PICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 164 ~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
-.||.||++...-+-+-..+.|+..-+.|++++.
T Consensus 137 F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 137 FRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 3699999988766655555566666666666554
No 173
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.29 E-value=57 Score=25.95 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=20.9
Q ss_pred HHHHhhhHHHHHhHHHHHhhHhHHhhhc
Q 004026 135 LERHENSLLRQENDKLRAENMSIRDAMR 162 (778)
Q Consensus 135 ~~r~e~~~l~~en~~L~~en~~l~e~~~ 162 (778)
|.+.+...|+.-.+.|..||++|+.++.
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~~ 29 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEVQ 29 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888776543
No 174
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.20 E-value=1.3e+02 Score=34.66 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=12.7
Q ss_pred cceeecCCcceEeecCCCccEEEEE
Q 004026 446 VNCRRLPSGCVVQDMPNGYSKVTWV 470 (778)
Q Consensus 446 ~~~~~~PSGclIq~~~nG~skVtwV 470 (778)
+|+|-.-|+=..+.+|-|+ +||=|
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl 347 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSL 347 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeE
Confidence 5555555555555555554 55544
No 175
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.18 E-value=44 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.9
Q ss_pred EEeecccChhHHHHhhhccccchhhhh
Q 004026 592 TSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 592 tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 176
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.13 E-value=4.2e+02 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.7
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccc
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCM 371 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 371 (778)
...|...+..+-+.|.|...|..-+|.+
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~ 31 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL 31 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc
Confidence 4566677999999999999999988775
No 177
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.96 E-value=99 Score=28.96 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHh
Q 004026 123 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 123 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 159 (778)
|+..+.-+.+....+.++..++++|+.|+.|-+.|+.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555555566666667777777777777666653
No 178
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=25.96 E-value=86 Score=28.91 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=19.7
Q ss_pred HHHHHHHhhhCCCCCHH--HHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 88 IQELESLFKECPHPDEK--QRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 88 l~~LE~~F~~~~~Ps~~--~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
+....-.|+.+|||... .+.. .|||.+||+.+.+
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~aR----------------RnRRRRWR~rq~Q 49 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQAR----------------RNRRRRWRARQRQ 49 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HHHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccccc----------------cchhhhHHHHHHH
Confidence 34455669999999844 1221 5899999976654
No 179
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=25.31 E-value=79 Score=37.48 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=16.7
Q ss_pred hHHHHHhHHHHHhhHhHHhhhc
Q 004026 141 SLLRQENDKLRAENMSIRDAMR 162 (778)
Q Consensus 141 ~~l~~en~~L~~en~~l~e~~~ 162 (778)
+.+-+||+.|++||..||+.+.
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 4466788888888888887664
No 180
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=22.53 E-value=1.8e+02 Score=29.51 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhh
Q 004026 80 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 128 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 128 (778)
...+|+++++++.+.-.++ |....+..||+++|+++.-|.+=.+--.
T Consensus 83 ~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 83 KYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred cccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 3579999999999988776 6778899999999999987776665444
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.32 E-value=1.3e+02 Score=31.59 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=9.2
Q ss_pred HHHHhHHHHHhhHhHHh
Q 004026 143 LRQENDKLRAENMSIRD 159 (778)
Q Consensus 143 l~~en~~L~~en~~l~e 159 (778)
|+++|++|+.+...++.
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555544
No 182
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.26 E-value=68 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=24.5
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
..+.-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEEecCCHHHHHHHHhccccccccCh
Confidence 3466788999999999999999999983
No 183
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=22.11 E-value=94 Score=20.76 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeeh
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 123 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvW 123 (778)
.++.++...+...|... + ...++++.++++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 36667776666666532 2 4567889999988877666
No 184
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.11 E-value=1.3e+02 Score=32.36 Aligned_cols=47 Identities=21% Similarity=0.083 Sum_probs=30.4
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhh
Q 004026 139 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 139 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
+.-..-..+.++++||++|++++. +.+....+...|++|.++++.++
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~------------------~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELL------------------ELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455678889999999988664 22222233347788888888764
No 185
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=21.44 E-value=45 Score=26.63 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=6.3
Q ss_pred HHHHHHHH
Q 004026 494 FGAQRWVA 501 (778)
Q Consensus 494 fGA~rwla 501 (778)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 38999976
No 186
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=21.28 E-value=84 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
..+|+.+.+.|+...+-. ...++|..++++++.|+.+..+=+.|..
T Consensus 2 ~~LT~~E~~vl~~l~~G~------~~~eIA~~l~is~~tV~~~~~~i~~Kl~ 47 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGM------SNKEIAEELGISEKTVKSHRRRIMKKLG 47 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-------HHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhcC------CcchhHHhcCcchhhHHHHHHHHHHHhC
Confidence 358899999998877654 4789999999999999988776655544
No 187
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.15 E-value=2.7e+02 Score=29.59 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=30.6
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhh
Q 004026 136 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 136 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
++.-..+.+...++++.+-.++.+ -+-..|+.||+.||.||+|+..-.
T Consensus 92 q~~v~~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 92 QEKVSYQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777776555432 133358889999999998876543
No 188
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=20.68 E-value=33 Score=36.26 Aligned_cols=37 Identities=38% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhH
Q 004026 135 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARL 192 (778)
Q Consensus 135 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~L 192 (778)
.++-....|+.-.+.|.+||++|++ +.++|+.||+||
T Consensus 126 EQ~T~I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL 162 (243)
T PF08961_consen 126 EQATKIADLRRLVEFLLAENERLRR---------------------ENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 3344445566667777777777765 345678888888
No 189
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.63 E-value=67 Score=30.29 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.4
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 004026 592 TSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 592 tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988888777
No 190
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.19 E-value=2.3e+02 Score=31.34 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=9.5
Q ss_pred hHHHhhhhhhhHHHHHHHHhh
Q 004026 181 EEQHLRIENARLKDELDRVCA 201 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~~ 201 (778)
..++|+.+-..|..|++.+..
T Consensus 263 rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 263 RNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
Done!