Query 004026
Match_columns 778
No_of_seqs 376 out of 1756
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 2.5E-19 8.5E-24 183.1 18.7 201 279-510 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 3.9E-18 1.3E-22 152.6 6.2 78 71-148 12-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 8.6E-18 2.9E-22 146.1 6.6 63 72-134 13-75 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 6.7E-18 2.3E-22 146.3 4.8 63 73-135 14-76 (80)
5 2kt0_A Nanog, homeobox protein 99.7 1.3E-17 4.4E-22 146.0 6.7 65 71-135 17-81 (84)
6 1nk2_P Homeobox protein VND; h 99.7 2.3E-17 7.9E-22 142.4 6.9 67 72-138 5-71 (77)
7 2cue_A Paired box protein PAX6 99.7 2.6E-17 8.9E-22 143.1 7.1 65 74-138 5-69 (80)
8 1wh5_A ZF-HD homeobox family p 99.7 1.3E-17 4.4E-22 145.4 4.7 61 73-133 14-78 (80)
9 2dmq_A LIM/homeobox protein LH 99.7 1.9E-17 6.6E-22 143.6 5.8 65 74-138 5-69 (80)
10 2dms_A Homeobox protein OTX2; 99.7 1.7E-17 5.9E-22 144.1 3.8 63 74-136 5-67 (80)
11 2dmu_A Homeobox protein goosec 99.7 3.6E-17 1.2E-21 138.5 5.6 62 74-135 5-66 (70)
12 1puf_A HOX-1.7, homeobox prote 99.7 7.5E-17 2.6E-21 139.2 7.7 64 74-137 11-74 (77)
13 2vi6_A Homeobox protein nanog; 99.7 1.3E-17 4.4E-22 138.0 2.7 60 75-134 2-61 (62)
14 1wh7_A ZF-HD homeobox family p 99.7 2.1E-17 7.3E-22 144.1 4.2 60 73-133 14-78 (80)
15 2cra_A Homeobox protein HOX-B1 99.7 2.6E-17 8.9E-22 139.5 4.6 62 74-135 5-66 (70)
16 1fjl_A Paired protein; DNA-bin 99.7 4.5E-17 1.5E-21 141.8 5.9 64 73-136 15-78 (81)
17 2e1o_A Homeobox protein PRH; D 99.7 5.7E-17 2E-21 137.4 6.3 62 74-135 5-66 (70)
18 2h1k_A IPF-1, pancreatic and d 99.7 4.3E-17 1.5E-21 135.4 5.2 60 75-134 2-61 (63)
19 2da2_A Alpha-fetoprotein enhan 99.7 4.5E-17 1.5E-21 137.9 5.0 63 73-135 4-66 (70)
20 2hdd_A Protein (engrailed home 99.7 4.7E-17 1.6E-21 134.2 4.5 58 76-133 3-60 (61)
21 1zq3_P PRD-4, homeotic bicoid 99.7 6E-17 2E-21 136.6 5.1 63 76-138 2-64 (68)
22 2djn_A Homeobox protein DLX-5; 99.7 4.3E-17 1.5E-21 138.1 4.2 62 73-134 4-65 (70)
23 2da1_A Alpha-fetoprotein enhan 99.7 5.7E-17 2E-21 137.2 4.9 62 74-135 5-66 (70)
24 1ig7_A Homeotic protein MSX-1; 99.6 8.1E-17 2.8E-21 131.3 5.2 57 77-133 1-57 (58)
25 1yz8_P Pituitary homeobox 2; D 99.6 4E-17 1.4E-21 137.6 2.7 62 75-136 2-63 (68)
26 1ahd_P Antennapedia protein mu 99.6 8.7E-17 3E-21 135.7 4.7 61 76-136 2-62 (68)
27 1b8i_A Ultrabithorax, protein 99.6 6.6E-17 2.2E-21 141.0 3.5 62 74-135 18-79 (81)
28 2l7z_A Homeobox protein HOX-A1 99.6 1.4E-16 4.8E-21 136.2 5.4 62 74-135 5-66 (73)
29 1jgg_A Segmentation protein EV 99.6 1.1E-16 3.8E-21 131.6 4.4 58 77-134 2-59 (60)
30 1bw5_A ISL-1HD, insulin gene e 99.6 7.1E-17 2.4E-21 135.2 3.3 60 75-134 2-61 (66)
31 2da4_A Hypothetical protein DK 99.6 9.8E-17 3.3E-21 139.4 4.1 61 74-134 6-70 (80)
32 1ftt_A TTF-1 HD, thyroid trans 99.6 1.6E-16 5.5E-21 133.9 5.1 61 76-136 2-62 (68)
33 2r5y_A Homeotic protein sex co 99.6 9.4E-17 3.2E-21 142.0 3.0 61 74-134 26-86 (88)
34 3nar_A ZHX1, zinc fingers and 99.6 1.6E-16 5.4E-21 142.9 4.2 64 74-137 23-86 (96)
35 3rkq_A Homeobox protein NKX-2. 99.6 2.1E-16 7.3E-21 128.3 4.5 57 76-132 2-58 (58)
36 2m0c_A Homeobox protein arista 99.6 3E-16 1E-20 134.2 5.5 63 73-135 6-68 (75)
37 3a02_A Homeobox protein arista 99.6 1.8E-16 6.2E-21 130.3 3.9 57 79-135 2-58 (60)
38 1akh_A Protein (mating-type pr 99.6 1.7E-16 5.8E-21 130.7 3.6 59 74-132 3-61 (61)
39 2hi3_A Homeodomain-only protei 99.6 3.6E-16 1.2E-20 133.6 5.8 59 77-135 3-62 (73)
40 1uhs_A HOP, homeodomain only p 99.6 3.5E-16 1.2E-20 133.3 5.5 59 77-135 2-61 (72)
41 3a03_A T-cell leukemia homeobo 99.6 2.8E-16 9.5E-21 127.6 4.6 54 81-134 2-55 (56)
42 2da5_A Zinc fingers and homeob 99.6 3.4E-16 1.2E-20 134.5 5.3 59 78-136 9-67 (75)
43 2k40_A Homeobox expressed in E 99.6 2.9E-16 9.9E-21 131.8 4.2 60 77-136 2-61 (67)
44 2cuf_A FLJ21616 protein; homeo 99.6 5.5E-16 1.9E-20 139.0 6.2 65 73-137 4-83 (95)
45 1b72_A Protein (homeobox prote 99.6 3.2E-16 1.1E-20 141.1 4.5 63 74-136 32-94 (97)
46 2ecc_A Homeobox and leucine zi 99.6 6.6E-16 2.3E-20 133.2 5.0 56 80-135 7-62 (76)
47 1x2n_A Homeobox protein pknox1 99.6 1.1E-15 3.9E-20 130.3 6.1 62 74-135 5-69 (73)
48 2ly9_A Zinc fingers and homeob 99.6 6.3E-16 2.2E-20 132.2 4.3 60 76-135 6-65 (74)
49 2ecb_A Zinc fingers and homeob 99.6 4.5E-16 1.5E-20 138.3 2.7 55 81-135 16-70 (89)
50 2dn0_A Zinc fingers and homeob 99.6 9.9E-16 3.4E-20 131.9 4.1 59 77-135 9-67 (76)
51 2dmn_A Homeobox protein TGIF2L 99.6 1.5E-15 5E-20 133.2 4.9 64 74-137 5-71 (83)
52 1puf_B PRE-B-cell leukemia tra 99.6 1.1E-15 3.9E-20 130.3 4.0 61 77-137 2-65 (73)
53 1e3o_C Octamer-binding transcr 99.6 8.2E-16 2.8E-20 150.4 3.4 61 74-134 99-159 (160)
54 2da6_A Hepatocyte nuclear fact 99.6 3.1E-15 1.1E-19 135.6 6.7 65 73-137 3-88 (102)
55 2xsd_C POU domain, class 3, tr 99.6 6.9E-16 2.3E-20 151.7 2.2 64 73-136 96-159 (164)
56 1au7_A Protein PIT-1, GHF-1; c 99.5 9.2E-16 3.1E-20 148.0 2.6 62 73-134 84-145 (146)
57 1k61_A Mating-type protein alp 99.5 2.2E-15 7.5E-20 123.7 4.4 55 79-133 1-58 (60)
58 1b72_B Protein (PBX1); homeodo 99.5 2E-15 6.7E-20 133.0 4.4 61 77-137 2-65 (87)
59 2dmp_A Zinc fingers and homeob 99.5 3.7E-15 1.2E-19 132.4 5.9 57 79-135 16-72 (89)
60 1du6_A PBX1, homeobox protein 99.5 1.4E-15 4.9E-20 126.4 2.8 58 76-133 3-63 (64)
61 2cqx_A LAG1 longevity assuranc 99.5 1.4E-15 4.8E-20 130.0 2.4 57 77-133 9-66 (72)
62 1wi3_A DNA-binding protein SAT 99.5 4.8E-15 1.6E-19 124.2 4.9 60 73-132 4-64 (71)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 4.9E-15 1.7E-19 130.7 4.9 58 75-132 26-86 (87)
64 1le8_B Mating-type protein alp 99.5 4.9E-15 1.7E-19 129.7 4.3 58 77-134 3-63 (83)
65 3d1n_I POU domain, class 6, tr 99.5 5.5E-15 1.9E-19 143.2 5.1 61 73-133 90-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.5 1.6E-15 5.5E-20 128.7 0.6 55 82-136 10-64 (69)
67 1lfb_A Liver transcription fac 99.5 2.7E-15 9.3E-20 135.8 2.0 64 73-136 6-90 (99)
68 3nau_A Zinc fingers and homeob 99.5 6.9E-15 2.4E-19 123.2 4.1 53 83-135 11-63 (66)
69 2e19_A Transcription factor 8; 99.5 1.4E-14 4.8E-19 121.1 3.2 52 82-133 9-60 (64)
70 3l1p_A POU domain, class 5, tr 99.5 1.8E-14 6.2E-19 140.3 4.4 61 74-134 94-154 (155)
71 1x2m_A LAG1 longevity assuranc 99.5 1.2E-14 4.1E-19 121.5 2.1 49 85-133 9-58 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 2.6E-14 8.7E-19 140.1 3.1 63 73-135 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 8.6E-14 2.9E-18 117.2 2.7 58 82-139 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 3.1E-13 1.1E-17 136.1 1.7 62 72-133 111-193 (194)
75 1em2_A MLN64 protein; beta bar 99.2 1.9E-10 6.4E-15 117.3 16.8 197 279-510 20-226 (229)
76 2pso_A STAR-related lipid tran 99.2 4E-11 1.4E-15 123.9 11.1 191 285-507 33-225 (237)
77 3p0l_A Steroidogenic acute reg 99.2 1.6E-10 5.5E-15 117.3 14.8 194 281-508 11-213 (221)
78 2lk2_A Homeobox protein TGIF1; 99.2 1.2E-11 4.2E-16 109.6 4.8 59 80-138 9-70 (89)
79 2h8r_A Hepatocyte nuclear fact 99.2 1.2E-11 4E-16 126.2 4.0 61 71-131 137-218 (221)
80 2da7_A Zinc finger homeobox pr 99.1 3.1E-11 1.1E-15 101.9 3.7 46 85-130 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 4.5E-11 1.6E-15 130.4 1.3 56 77-132 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 99.0 3.9E-09 1.3E-13 105.8 13.7 151 339-509 52-209 (214)
83 1jss_A Stard4, cholesterol-reg 98.9 9.3E-09 3.2E-13 104.7 13.7 191 281-508 25-222 (224)
84 3fo5_A Thioesterase, adipose a 98.8 2.8E-08 9.6E-13 104.2 11.3 126 342-484 91-223 (258)
85 3qsz_A STAR-related lipid tran 98.5 6E-07 2E-11 88.3 12.9 152 340-509 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.5 1E-08 3.4E-13 76.5 -0.9 21 118-138 1-21 (37)
87 2e3n_A Lipid-transfer protein 98.3 5.6E-06 1.9E-10 85.6 13.4 152 341-510 75-247 (255)
88 2r55_A STAR-related lipid tran 97.2 0.0089 3E-07 60.4 16.9 198 529-775 19-227 (231)
89 3qsz_A STAR-related lipid tran 96.9 0.017 5.7E-07 56.4 15.1 171 555-775 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.4 0.034 1.2E-06 56.1 13.6 191 534-775 26-222 (224)
91 1ln1_A PC-TP, phosphatidylchol 96.3 0.076 2.6E-06 52.5 15.0 171 553-774 26-207 (214)
92 3p0l_A Steroidogenic acute reg 96.2 0.12 4E-06 51.9 16.3 193 533-775 11-213 (221)
93 1em2_A MLN64 protein; beta bar 96.0 0.14 4.9E-06 51.5 15.6 196 532-775 21-224 (229)
94 2pso_A STAR-related lipid tran 96.0 0.11 3.9E-06 53.0 14.9 175 553-776 48-227 (237)
95 2d4r_A Hypothetical protein TT 94.6 0.25 8.6E-06 44.1 10.8 140 343-510 6-145 (147)
96 3fo5_A Thioesterase, adipose a 94.2 0.17 5.9E-06 52.7 10.0 181 496-706 10-202 (258)
97 2e3n_A Lipid-transfer protein 89.3 3.8 0.00013 41.7 13.0 198 534-774 28-244 (255)
98 3tfz_A Cyclase; helix-GRIP, BE 87.7 4.8 0.00016 38.4 11.8 146 342-512 8-162 (172)
99 3tl1_A WHIE ORF VI, polyketide 86.9 7.5 0.00026 37.1 12.6 142 342-512 6-149 (159)
100 2jn6_A Protein CGL2762, transp 86.8 0.25 8.5E-06 43.0 1.9 43 81-126 4-46 (97)
101 2ys9_A Homeobox and leucine zi 85.6 0.35 1.2E-05 40.8 2.1 39 88-126 18-56 (70)
102 1t17_A Conserved hypothetical 85.2 2.8 9.7E-05 38.5 8.5 141 342-510 5-145 (148)
103 3tvq_A Multifunctional cyclase 84.9 11 0.00038 36.3 12.8 145 342-513 6-150 (169)
104 3p9v_A Uncharacterized protein 83.5 14 0.00047 34.8 12.6 140 342-507 10-149 (161)
105 2jee_A YIIU; FTSZ, septum, coi 74.3 3 0.0001 36.1 4.2 56 136-205 18-77 (81)
106 1ci6_A Transcription factor AT 70.7 8.3 0.00028 31.6 5.9 41 136-197 21-61 (63)
107 2j5u_A MREC protein; bacterial 70.1 1.5 5.3E-05 45.4 1.7 36 143-196 24-59 (255)
108 2wt7_B Transcription factor MA 67.0 15 0.0005 32.5 7.0 67 114-201 17-83 (90)
109 2pcs_A Conserved protein; stru 65.9 80 0.0027 28.8 13.7 118 344-488 8-127 (162)
110 1hjb_A Ccaat/enhancer binding 64.8 11 0.00037 33.1 5.7 19 141-159 39-57 (87)
111 1t2k_D Cyclic-AMP-dependent tr 61.2 21 0.0007 28.8 6.5 40 136-196 20-59 (61)
112 1jnm_A Proto-oncogene C-JUN; B 56.6 13 0.00045 30.2 4.5 23 137-159 21-43 (62)
113 2wt7_A Proto-oncogene protein 48.8 41 0.0014 27.3 6.3 26 136-161 21-46 (63)
114 1gu4_A CAAT/enhancer binding p 48.5 26 0.00089 30.0 5.3 16 143-158 41-56 (78)
115 3ra3_B P2F; coiled coil domain 47.1 9.7 0.00033 25.7 1.8 18 183-200 3-20 (28)
116 1l8d_A DNA double-strand break 47.0 17 0.00058 32.4 4.2 12 163-174 47-58 (112)
117 3m91_A Proteasome-associated A 45.6 36 0.0012 27.0 5.2 38 142-200 13-50 (51)
118 3p51_A Uncharacterized protein 45.2 83 0.0028 29.8 9.0 112 343-477 6-118 (160)
119 2qpv_A Uncharacterized protein 44.3 15 0.0005 35.1 3.5 30 589-618 28-57 (156)
120 1hlv_A CENP-B, major centromer 43.7 19 0.00066 32.3 4.1 49 79-130 4-52 (131)
121 2elh_A CG11849-PA, LD40883P; s 43.1 15 0.00053 31.1 3.1 43 77-124 17-59 (87)
122 1gd2_E Transcription factor PA 42.3 56 0.0019 27.4 6.3 14 184-197 54-67 (70)
123 2glo_A Brinker CG9653-PA; prot 41.1 16 0.00053 28.7 2.6 45 80-125 3-47 (59)
124 2d4r_A Hypothetical protein TT 37.8 15 0.00052 32.1 2.3 29 590-618 4-32 (147)
125 3s9g_A Protein hexim1; cyclin 37.7 33 0.0011 30.7 4.3 54 137-197 36-89 (104)
126 3he5_B Synzip2; heterodimeric 37.7 78 0.0027 24.1 5.7 22 181-202 25-46 (52)
127 2rn7_A IS629 ORFA; helix, all 36.0 0.72 2.5E-05 40.8 -6.8 46 80-125 4-52 (108)
128 1uii_A Geminin; human, DNA rep 33.9 57 0.0019 28.3 5.1 21 184-204 57-77 (83)
129 2pcs_A Conserved protein; stru 33.6 16 0.00055 33.7 1.8 28 590-617 5-32 (162)
130 2ns9_A Hypothetical protein AP 32.7 19 0.00064 32.7 2.1 29 589-617 14-42 (157)
131 3m9b_A Proteasome-associated A 32.4 33 0.0011 35.5 4.0 18 183-200 78-95 (251)
132 2ns9_A Hypothetical protein AP 32.3 2.7E+02 0.0092 24.7 11.1 28 344-371 18-45 (157)
133 1jko_C HIN recombinase, DNA-in 31.4 15 0.00051 26.9 1.0 43 82-129 5-47 (52)
134 3hug_A RNA polymerase sigma fa 31.3 38 0.0013 28.6 3.7 49 82-135 37-85 (92)
135 3ggn_A Uncharacterized protein 30.5 27 0.00093 32.3 2.9 30 589-618 5-34 (155)
136 3m48_A General control protein 28.7 46 0.0016 24.1 3.0 22 182-203 9-30 (33)
137 2leq_A Uncharacterized protein 28.7 35 0.0012 30.2 3.2 28 589-616 6-33 (146)
138 1t17_A Conserved hypothetical 28.5 27 0.00092 31.8 2.4 29 590-618 4-32 (148)
139 2rgt_A Fusion of LIM/homeobox 27.8 1.9 6.6E-05 41.4 -5.8 30 74-103 134-163 (169)
140 2dgc_A Protein (GCN4); basic d 27.1 68 0.0023 26.2 4.3 18 184-201 41-58 (63)
141 1x53_A Activator of 90 kDa hea 27.0 35 0.0012 31.0 2.9 28 590-617 13-40 (145)
142 3q6a_A Uncharacterized protein 26.8 37 0.0013 30.4 3.0 27 591-617 4-30 (135)
143 3mzy_A RNA polymerase sigma-H 26.1 54 0.0019 29.5 4.0 48 82-135 109-156 (164)
144 2j5u_A MREC protein; bacterial 26.1 37 0.0013 35.0 3.1 40 146-203 20-59 (255)
145 3a5t_A Transcription factor MA 25.6 15 0.0005 33.5 0.0 66 114-200 27-92 (107)
146 1tc3_C Protein (TC3 transposas 25.0 40 0.0014 24.0 2.3 40 82-126 5-44 (51)
147 3lph_A Protein REV; helix-loop 25.0 76 0.0026 26.8 4.2 36 88-137 18-53 (72)
148 1deb_A APC protein, adenomatou 24.9 52 0.0018 25.9 3.0 26 181-206 11-36 (54)
149 2yy0_A C-MYC-binding protein; 24.9 84 0.0029 24.9 4.3 13 184-196 23-35 (53)
150 1p4w_A RCSB; solution structur 24.8 52 0.0018 28.9 3.4 46 80-131 32-77 (99)
151 3tfz_A Cyclase; helix-GRIP, BE 23.8 45 0.0015 31.4 3.1 30 589-618 6-35 (172)
152 1gd2_E Transcription factor PA 23.7 1.1E+02 0.0039 25.6 5.1 17 185-201 48-64 (70)
153 1s7o_A Hypothetical UPF0122 pr 23.6 1.1E+02 0.0038 27.3 5.5 49 82-135 22-70 (113)
154 2o8x_A Probable RNA polymerase 22.7 39 0.0013 26.5 2.1 47 82-133 15-61 (70)
155 1wlq_A Geminin; coiled-coil; 2 22.2 99 0.0034 26.8 4.5 16 187-202 52-67 (83)
156 2oa5_A Hypothetical protein BQ 21.6 1.3E+02 0.0046 27.3 5.4 24 140-163 10-33 (110)
157 3s9g_A Protein hexim1; cyclin 21.5 1E+02 0.0035 27.5 4.5 21 139-159 66-86 (104)
158 1xn6_A Hypothetical protein BC 21.3 39 0.0013 30.4 2.0 28 590-617 10-37 (143)
159 3c57_A Two component transcrip 21.1 48 0.0017 28.4 2.5 47 80-132 25-71 (95)
160 1z94_A Conserved hypothetical 21.1 38 0.0013 30.2 1.9 26 592-617 7-32 (147)
161 3ulq_B Transcriptional regulat 20.9 65 0.0022 27.6 3.2 43 79-127 26-68 (90)
162 2kew_A Uncharacterized protein 20.9 40 0.0014 31.0 2.0 28 590-617 12-39 (152)
163 1xsv_A Hypothetical UPF0122 pr 20.8 1.3E+02 0.0045 26.7 5.4 50 82-136 25-74 (113)
164 2le1_A Uncharacterized protein 20.5 64 0.0022 29.3 3.3 28 590-617 4-31 (151)
165 1hjb_A Ccaat/enhancer binding 20.4 1.7E+02 0.0059 25.5 5.8 22 182-203 52-73 (87)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=183.12 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 004026 279 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 358 (778)
Q Consensus 279 k~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~l 358 (778)
++.++++|++||+||+++++.+ ..|....+.. +.+.|.+.. .+....+.|..++|.+.+.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 8899999999999999999754 7898754321 123332221 1233578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeeh-hhhcccccccCceeEEEeeeceecCceEEEEEEe
Q 004026 359 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 432 (778)
Q Consensus 359 mD-----~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~a-el~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS 432 (778)
|+ +.+|-..| ..+++++.|+. .-.++|. ....++++|++|||.++||+++.++|.|+|+.+|
T Consensus 87 ~~~d~~~r~~Wd~~~----~~~~vle~i~~--------~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENV----TGFEIIQSITD--------TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTC----SEEEEEEECSS--------SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhcccc----ceeEEEEEcCC--------CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 88998775 46777777751 1233442 2234557999999999999999999999999999
Q ss_pred ccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 004026 433 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 510 (778)
Q Consensus 433 ~d~~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cerl 510 (778)
++... .|..+.++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.++.+|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98532 22223589999999999999998 78999999999998876 54 67899999999999999999999753
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=3.9e-18 Score=152.62 Aligned_cols=78 Identities=32% Similarity=0.420 Sum_probs=63.4
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhH
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 148 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~ 148 (778)
+..+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 345567888999999999999999999999999999999999999999999999999999999887766665555443
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=146.12 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=59.2
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
..++.||+|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999974
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-18 Score=146.32 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.2
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+++||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456788899999999999999999999999999999999999999999999999999999753
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=146.02 Aligned_cols=65 Identities=29% Similarity=0.295 Sum_probs=60.3
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
...+++||+|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34456788899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=2.3e-17 Score=142.39 Aligned_cols=67 Identities=30% Similarity=0.359 Sum_probs=61.5
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
..++++|+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456688899999999999999999999999999999999999999999999999999999876553
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.6e-17 Score=143.07 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.4
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
++.||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999876543
No 8
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.3e-17 Score=145.43 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.6
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhh----CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++||+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567888999999999999999999 999999999999999999999999999999999874
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=143.64 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=60.5
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
.++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999876543
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-17 Score=144.11 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=59.3
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
++.||+|++||.+|+..||..|+.++||+..+|.+||.+++|+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 466888999999999999999999999999999999999999999999999999999997654
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=138.54 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.2
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35678899999999999999999999999999999999999999999999999999999753
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.67 E-value=7.5e-17 Score=139.18 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=60.0
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
++.+++|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.67 E-value=1.3e-17 Score=138.05 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++|+|+.||.+|+..||..|+.++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457889999999999999999999999999999999999999999999999999999975
No 14
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=144.10 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.4
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++||+|+.||.+|+..|| .|.+ ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.6e-17 Score=139.49 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.3
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45678899999999999999999999999999999999999999999999999999999753
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=4.5e-17 Score=141.84 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=59.0
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566888999999999999999999999999999999999999999999999999999998654
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.7e-17 Score=137.39 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=57.9
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++.+++|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34577889999999999999999999999999999999999999999999999999999753
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.66 E-value=4.3e-17 Score=135.41 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=55.5
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788999999999999999999999999999999999999999999999999999975
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-17 Score=137.85 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.9
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+++|++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 346688899999999999999999999999999999999999999999999999999999753
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.65 E-value=4.7e-17 Score=134.22 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.2
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
+||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999996
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=6e-17 Score=136.59 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.2
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
.||+|+.||.+|+..||..|+.++||+..+|.+||..+||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467889999999999999999999999999999999999999999999999999999876553
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-17 Score=138.14 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=58.3
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
.++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 34568889999999999999999999999999999999999999999999999999999974
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=5.7e-17 Score=137.20 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.5
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++.||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45688899999999999999999999999999999999999999999999999999999753
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=8.1e-17 Score=131.31 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=55.0
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.64 E-value=4e-17 Score=137.55 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=58.7
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
++||+|++||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999997654
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.64 E-value=8.7e-17 Score=135.66 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.7
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
+||.|++||.+|+..||..|+.++||+..+|.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4778899999999999999999999999999999999999999999999999999998653
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.63 E-value=6.6e-17 Score=141.02 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||++
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.63 E-value=1.4e-16 Score=136.23 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.4
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+.||+|++||.+|+..||..|+.++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.63 E-value=1.1e-16 Score=131.56 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.2
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999999999999999999999974
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=7.1e-17 Score=135.18 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.2
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
++||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 457889999999999999999999999999999999999999999999999999999974
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.8e-17 Score=139.38 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhC----CCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++||+|+.||.+|+..||..|+.+ +||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4668889999999999999999999 999999999999999999999999999999999974
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=1.6e-16 Score=133.95 Aligned_cols=61 Identities=38% Similarity=0.510 Sum_probs=57.8
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
+||+|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999997653
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.62 E-value=9.4e-17 Score=142.01 Aligned_cols=61 Identities=34% Similarity=0.494 Sum_probs=54.8
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3567889999999999999999999999999999999999999999999999999999975
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=142.86 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=57.0
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
+..+|+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3456788999999999999999999999999999999999999999999999999999986543
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=128.33 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.5
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999986
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=134.15 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=58.8
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.++++|.|++||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999753
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.61 E-value=1.8e-16 Score=130.29 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 79 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468999999999999999999999999999999999999999999999999999764
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=1.7e-16 Score=130.70 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
.+++++|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999976
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.6e-16 Score=133.58 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.8
Q ss_pred cCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999865
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.5e-16 Score=133.27 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.7
Q ss_pred cCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999755
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=127.60 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=134.53 Aligned_cols=59 Identities=25% Similarity=0.551 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 78 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 78 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
++|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45567999999999999999999999999999999999999999999999999997653
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=131.84 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=5.5e-16 Score=139.01 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhc---------------cccceeeehhhhhhhHHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Kkk~~r 137 (778)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.+++ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346788899999999999999999999999999999999999 99999999999999999987653
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=3.2e-16 Score=141.06 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=56.0
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+.+++|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778999999999999999999999999999999999999999999999999999998653
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=6.6e-16 Score=133.23 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 80 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
|.+||.+|+..||+.|..++||+..+|++||..+||+++||++||||||+|+|+.+
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999754
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=130.31 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=57.8
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++.|++|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456778899999999999999987 99999999999999999999999999999999999754
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-16 Score=132.15 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=56.9
Q ss_pred CcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.++.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467789999999999999999999999999999999999999999999999999999754
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=4.5e-16 Score=138.33 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+||.+|+.+||+.|+.++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999754
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.9e-16 Score=131.85 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 33478899999999999999999999999999999999999999999999999999754
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=133.19 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
.++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456778899999999999999988 5999999999999999999999999999999999976543
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.56 E-value=1.1e-15 Score=130.31 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.1
Q ss_pred cCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++..+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778999999999999999 999999999999999999999999999999999999976543
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.56 E-value=8.2e-16 Score=150.44 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=54.7
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++||+|+.||.+|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999974
No 54
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=135.65 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhh---------------------ccccceeeehhhhhhhHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 131 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gLs~rQVkvWFQNRRaK~ 131 (778)
.+++||.|+.||+.|+..||+.|+.++||+..+|++||.++ .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHH
Q 004026 132 KTQLER 137 (778)
Q Consensus 132 Kkk~~r 137 (778)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987543
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.55 E-value=6.9e-16 Score=151.68 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+++||+|++||.+|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567888999999999999999999999999999999999999999999999999999998653
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=9.2e-16 Score=148.04 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.5
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
.+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45677889999999999999999999999999999999999999999999999999999974
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.55 E-value=2.2e-15 Score=123.72 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 79 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678999999999999999 999999999999999999999999999999999986
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.55 E-value=2e-15 Score=133.00 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.5
Q ss_pred cCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778999999999999999 899999999999999999999999999999999999976533
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-15 Score=132.36 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 79 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
++++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 344599999999999999999999999999999999999999999999999998654
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=1.4e-15 Score=126.39 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.3
Q ss_pred CcCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 76 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 76 ~rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++|++||.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 99999999999999999999999999999999999986
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.4e-15 Score=129.98 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=53.4
Q ss_pred cCCCCCCCHHHHHHHHHHh-hhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 77 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++.+++.+|+..||+.| +.++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4455678999999999999 99999999999999999999999999999999999995
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=4.8e-15 Score=124.22 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.6
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
.+++||.||.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997543
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.52 E-value=4.9e-15 Score=130.70 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.2
Q ss_pred CCcCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 75 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 75 k~rr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
+++++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667899999999999999999 99999999999999999999999999999999998
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.52 E-value=4.9e-15 Score=129.74 Aligned_cols=58 Identities=36% Similarity=0.433 Sum_probs=53.7
Q ss_pred cCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 455677999999999999999 9999999999999999999999999999999999975
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.52 E-value=5.5e-15 Score=143.15 Aligned_cols=61 Identities=33% Similarity=0.633 Sum_probs=57.9
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++||+|++||.+|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567788999999999999999999999999999999999999999999999999999986
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-15 Score=128.70 Aligned_cols=55 Identities=36% Similarity=0.473 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+|..|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5899999999999999999999999999999999999999999999999997653
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=2.7e-15 Score=135.84 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=54.0
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHh------------------hc---cccceeeehhhhhhhHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 131 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 131 (778)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.. || |++.||++||||||+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHH
Q 004026 132 KTQLE 136 (778)
Q Consensus 132 Kkk~~ 136 (778)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 87654
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.50 E-value=6.9e-15 Score=123.18 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 83 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 83 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
-|.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=121.10 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.++.+|+..||+.|..++||+..+|.+||.++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4578999999999999999999999999999999999999999999999875
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.47 E-value=1.8e-14 Score=140.28 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.2
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 134 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk 134 (778)
+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999974
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=1.2e-14 Score=121.51 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.1
Q ss_pred HHHHHHHHHHh-hhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 85 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 85 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999999985
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.44 E-value=2.6e-14 Score=140.09 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.7
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 73 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 73 ~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.++.||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 446688899999999999999999999999999999999999999999999999999999754
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=8.6e-14 Score=117.22 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHHh
Q 004026 82 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 139 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 139 (778)
+||.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=3.1e-13 Score=136.08 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhc---------------------cccceeeehhhhhhhH
Q 004026 72 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 130 (778)
Q Consensus 72 ~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK 130 (778)
..+++||.|+.||+.|+..||+.|+.++||+...|++||..++ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456788899999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 004026 131 MKT 133 (778)
Q Consensus 131 ~Kk 133 (778)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.22 E-value=1.9e-10 Score=117.28 Aligned_cols=197 Identities=11% Similarity=0.167 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-
Q 004026 279 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 355 (778)
Q Consensus 279 k~~~~~lA~~Am~El~~la~~~~plWi~~~~--~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LV- 355 (778)
....++++++|+++++++... .--|....+ .| ..| |.+..+. .|. .-|..++|...+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 456789999999999999863 347976532 23 111 3333321 121 3488899999999998
Q ss_pred HHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcc--cccccCceeEEEeeeceecCceEEEEE
Q 004026 356 ETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVD 430 (778)
Q Consensus 356 e~lmD~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~--SpLvp~Re~~fLRyc~q~~~g~w~VvD 430 (778)
++|+|.+ +|-.. +..++.++.+.. ++ .+ +-++..+ .+++++|||.++|+++.. ++.++|+-
T Consensus 84 ~~~~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~ 149 (229)
T 1em2_A 84 EVILQPERMVLWNKT----VTACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSG 149 (229)
T ss_dssp HTTTCHHHHTTTCTT----EEEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEE
T ss_pred HHHhCccchhhcccc----cceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEE
Confidence 7776654 66555 244566666542 12 23 3346655 578999999999999997 56699999
Q ss_pred EeccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 431 VSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 431 vS~d~~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
.|++... .|....++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+
T Consensus 150 ~Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~ 224 (229)
T 1em2_A 150 IATSHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRIS 224 (229)
T ss_dssp EECCCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997542 22223589999999999999987 67899999999987765 55 567877777777788999988887
Q ss_pred HH
Q 004026 509 CL 510 (778)
Q Consensus 509 rl 510 (778)
.+
T Consensus 225 ~~ 226 (229)
T 1em2_A 225 EL 226 (229)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 76
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.21 E-value=4e-11 Score=123.88 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HHhcChhh
Q 004026 285 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 363 (778)
Q Consensus 285 lA~~Am~El~~la~~~~plWi~~~~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LV-e~lmD~~~ 363 (778)
+++.++.|+++.+.....-|....+.....| |.+.. +.|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~-------~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKV-------GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECC-------CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEc-------CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 3456777777776544556977543221111 11111 12333345688888887777764 78999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeece-ecCceEEEEEEeccCccCCCCC
Q 004026 364 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 442 (778)
Q Consensus 364 W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q-~~~g~w~VvDvS~d~~~~~~~~ 442 (778)
|-..+ ..++.++.|+. .-.++|..+..+.| +++|||.++||.++ +++|.++||-.|++.... |..
T Consensus 101 Wd~~~----~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~-P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEA-QLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTC-CCC
T ss_pred HHhhh----ceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCC-CCC
Confidence 98873 55677777652 23567777776665 79999999999985 789999999999985432 322
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 004026 443 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 507 (778)
Q Consensus 443 ~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~c 507 (778)
.++|+..+++|++|+++++|.|+|||+-|++.. ..+|.-+..++.. .+-.-++.|++++
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~----~~~~~l~~LR~~~ 225 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGH----LCAAEVARIRNSF 225 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHH----HHHHHHHHHHHTT
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHH----HHHHHHHHHHHHH
Confidence 589999999999999999999999999999987 4577665333322 2223466664443
No 77
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.20 E-value=1.6e-10 Score=117.29 Aligned_cols=194 Identities=14% Similarity=0.206 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 004026 281 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 358 (778)
Q Consensus 281 ~~~~lA~~Am~El~~la~~~~plWi~~~--~~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~l 358 (778)
-...+|++||+|++++.. ++.-|.... +.| .. -|.+.++.. | -.=|..++|...+.+|.+.|
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l 74 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEEL 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHH
Confidence 457899999999999976 345797762 333 11 233332211 2 34589999999999999998
Q ss_pred -cC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhh-hcccccccCceeEEEeeeceecCceEEEEEEec
Q 004026 359 -MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL-QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSI 433 (778)
Q Consensus 359 -mD---~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael-~~~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~ 433 (778)
+| +.+|-..+ ..++.++.++. ++ .+.|... ..+.+++++|||.++||.++. +|.++|+-.|+
T Consensus 75 ~~d~~~r~~Wd~~~----~~~~vle~~~~-------~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 75 VERMEAMGEWNPNV----KEIKVLQKIGK-------DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTTGGGTTTSCTTC----SEEEEEEECSS-------SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred HhccchhhhcCcch----heEEEEEecCC-------Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 46 46787763 44555555442 22 4555432 223568999999999999986 68899999998
Q ss_pred cCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 434 DTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 434 d~~~~~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
+... .|..+.++|+..+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 142 ~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 142 DFGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 1222358999999999999999988 999999999988766 43 455666666777789999988887
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=109.55 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHHH
Q 004026 80 YHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
-+-|+.+++..|+..|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 356899999999999987 99999999999999999999999999999999999876554
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=126.25 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=53.1
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhc---------------------cccceeeehhhhhhh
Q 004026 71 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRT 129 (778)
Q Consensus 71 ~~~~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRa 129 (778)
+..+++||.|+.|++.|+..||+.|+.++||+..+|++||..++ |++.||++||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34566788889999999999999999999999999999999998 789999999999998
Q ss_pred HH
Q 004026 130 QM 131 (778)
Q Consensus 130 K~ 131 (778)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.1e-11 Score=101.86 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhH
Q 004026 85 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 130 (778)
Q Consensus 85 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 130 (778)
.+|+..||.+|..+++|+..++.+||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.01 E-value=4.5e-11 Score=130.41 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=53.1
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45677899999999999999999999999999999999999999999999999976
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.98 E-value=3.9e-09 Score=105.78 Aligned_cols=151 Identities=16% Similarity=0.230 Sum_probs=118.0
Q ss_pred eeeeceeEEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEE
Q 004026 339 EASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 414 (778)
Q Consensus 339 eAsR~~~~V~-~~~~~LVe~lmD---~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~f 414 (778)
-.-|..++|. ..+.++.+.|+| +.+|... +...+||.. +|. .++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEE
Confidence 3569999995 999999999999 6788776 455666654 232 4789999988886 9999999
Q ss_pred Eeeeceec-Cc--eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccc
Q 004026 415 LRFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 491 (778)
Q Consensus 415 LRyc~q~~-~g--~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg 491 (778)
+|+++.++ +| .|+|+-.|++... .|..+.++|...+++|++|++.++|.|+||++-|++.. ..+|.- |++..
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~ 191 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWA 191 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHH
Confidence 99999875 66 5999999997543 22223589999999999999999999999999999987 456543 34444
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004026 492 MGFGAQRWVATLQRQCEC 509 (778)
Q Consensus 492 ~afGA~rwla~LqR~cer 509 (778)
..-++..++..|+++|+.
T Consensus 192 ~~~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQN 209 (214)
T ss_dssp HHTHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 555677888889888864
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.91 E-value=9.3e-09 Score=104.70 Aligned_cols=191 Identities=12% Similarity=0.140 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeeccC-CCcccccChHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhc
Q 004026 281 MFLELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 359 (778)
Q Consensus 281 ~~~~lA~~Am~El~~la~~~~plWi~~~~-~~~~e~Ln~~eY~~~f~~~~g~~~~g~~~eAsR~~~~V~~~~~~LVe~lm 359 (778)
.+.+.+.++|..+..+. +.-|-...+ .+ .+.|.+. ..+...-.-|..++|...+..|.+.|+
T Consensus 25 ~~~~~~~e~l~~~~~~~---~~~W~~~~~~~g----------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~ 87 (224)
T 1jss_A 25 SISTKLQNTLIQYHSIE---EDEWRVAKKAKD----------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIR 87 (224)
T ss_dssp THHHHHHHHHHHHTTSC---GGGCEEEEEETT----------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhC---CCCCEEEEECCC----------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHh
Confidence 35666666666665543 556966432 22 1222210 112222345888999999999999999
Q ss_pred Chh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhc-ccccccCceeEEEeeeceecCceEEEEEEeccC
Q 004026 360 DPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 435 (778)
Q Consensus 360 D~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~-~SpLvp~Re~~fLRyc~q~~~g~w~VvDvS~d~ 435 (778)
|.. +|-..| ..++.++.|+ +.-.+.|.-+.- +-|++.+|||.++|+.++.++| ++|+-+|++.
T Consensus 88 d~~~r~~Wd~~~----~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 88 PGPWRLDWDRLM----TSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp SSTTHHHHCSSE----EEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred Ccccccccccce----eeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 965 887763 3445555443 123455655543 3457999999999999999877 7889999984
Q ss_pred ccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 004026 436 IRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 508 (778)
Q Consensus 436 ~~~~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 508 (778)
... .+.++|+...++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 155 p~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 155 SET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 332 2358999999999999999875 899999999988754 44 456777677777888999987764
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.75 E-value=2.8e-08 Score=104.19 Aligned_cols=126 Identities=11% Similarity=0.155 Sum_probs=96.2
Q ss_pred eceeEEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccc--cccCceeEEEe
Q 004026 342 RETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLR 416 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~Sp--Lvp~Re~~fLR 416 (778)
|..++|...+..|.+.|+|.+ +|-..+ ..++.++-|+. + .++| ++..|+| ++++|||..||
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~----~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr 156 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY----RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILA 156 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC----CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc----cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEE
Confidence 888899999999999999876 555542 44566655552 1 4577 6777775 79999999999
Q ss_pred eece-ecCce-EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccc
Q 004026 417 FCKQ-HAEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLY 484 (778)
Q Consensus 417 yc~q-~~~g~-w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 484 (778)
|.+. ..+|. ++|+-+|++... -|..+.++|+..+|+||+|+++++|.|+||++-|++- ..++..-
T Consensus 157 ~~r~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~ 223 (258)
T 3fo5_A 157 SRRKPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVT 223 (258)
T ss_dssp EEECCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHH
T ss_pred EEEeccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceE
Confidence 9987 44775 999999988432 2222358999999999999999999999999988873 4454443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.54 E-value=6e-07 Score=88.35 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=108.2
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeec
Q 004026 340 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 419 (778)
Q Consensus 340 AsR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~ 419 (778)
.=|..++|...+.++.+.|+|.+...+--|. +...+||.. . ++ -.++|.++..|-| +..|||.++|+..
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4688899999999999999997654444333 455666665 2 12 3556777777665 7899999999999
Q ss_pred eecCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 004026 420 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 499 (778)
Q Consensus 420 q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rw 499 (778)
...+|...|+=.+ +. ...|..+.++|++.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..
T Consensus 97 ~~~~g~~~i~~~~-~~-~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEA-VP-DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEE-CT-TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEc-CC-CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHH
Confidence 9878876554333 21 11122235799999999999999 99999999999998763 3443 33444555566678
Q ss_pred HHHHHHHHHH
Q 004026 500 VATLQRQCEC 509 (778)
Q Consensus 500 la~LqR~cer 509 (778)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8888887764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.49 E-value=1e-08 Score=76.51 Aligned_cols=21 Identities=48% Similarity=0.874 Sum_probs=18.5
Q ss_pred ceeeehhhhhhhHHHHHHHHH
Q 004026 118 RQVKFWFQNRRTQMKTQLERH 138 (778)
Q Consensus 118 rQVkvWFQNRRaK~Kkk~~r~ 138 (778)
+||+|||||||+||||++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999877653
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.28 E-value=5.6e-06 Score=85.57 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=107.7
Q ss_pred eeceeEEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEe
Q 004026 341 SRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLR 416 (778)
Q Consensus 341 sR~~~~V~-~~~~~LVe~lmD---~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLR 416 (778)
=|..+.|. ..+..+.+.|+| +.+|-.. +..++.++.|.. ++ .++|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~----~~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETT----IENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCS----EEEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhh----cceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEE
Confidence 46566665 789999999999 4577665 345666665542 12 6788888888885 899999999
Q ss_pred eeceec----C--ceEEEEEEeccCccCCCCCCCccceee---cCCcceEeecCC--------CccEEEEEEeeeecccc
Q 004026 417 FCKQHA----E--GVWAVVDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQ 479 (778)
Q Consensus 417 yc~q~~----~--g~w~VvDvS~d~~~~~~~~~~~~~~~~---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~ 479 (778)
+.++.. + +.|+|+..|++... .|....++|... +.+|++|++..+ +.|+|||+-|++..- .
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~ 219 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-W 219 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-C
T ss_pred EEEeccccccCCCCEEEEEEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-c
Confidence 999883 3 59999999998542 122234788884 678999998733 579999999998764 3
Q ss_pred ccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 004026 480 VHQLYKPLIISGMGFGAQRWVATLQRQCECL 510 (778)
Q Consensus 480 v~~l~rpl~~sg~afGA~rwla~LqR~cerl 510 (778)
+|.- +++.....+.-..+..|+++++..
T Consensus 220 iP~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 220 APAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 4442 344555666777888888887744
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.23 E-value=0.0089 Score=60.41 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhh-
Q 004026 529 GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL- 607 (778)
Q Consensus 529 ~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL- 607 (778)
..+..++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+. + |.++ ++..-+++||+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHHH
Confidence 34456999999999888876633 4789977 3 357899998876322 2 3344 44555599999999999
Q ss_pred -hccccchhhhhhcCCCCcceeeecccCCCCCceEEEEE-eccc---C-CCCCceEEEEccccCCCCcEE-EEeecchhh
Q 004026 608 -RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI---N-ANQSSMLILQETCTDAAGSLV-VYAPVDIPA 680 (778)
Q Consensus 608 -rd~~~R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr-~~~~---~-~~~~~~liLQes~td~sgs~v-VyAPvD~~~ 680 (778)
.|...|.+||.... ..+.+..|. .... |++ .... . ....+..+|.-...+.-|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 99999999997432 233333332 1222 333 2211 1 234566666654445557775 577787654
Q ss_pred hhhhhcCCCCCC--cccccCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh
Q 004026 681 MHVVMNGGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET 758 (778)
Q Consensus 681 m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t 758 (778)
+- ..+.+ +.++|+||.|-|.... .++|.+|.-+|+=.... +...-+..
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~ 209 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSGY----LPQNVVDS 209 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CCHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCCC----ccHHHHHH
Confidence 21 11233 3578999999984210 14788888777654332 22111221
Q ss_pred -HhhhhhHHHHHHHHHhc
Q 004026 759 -VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 759 -v~~li~~tv~~Ik~Al~ 775 (778)
+..-+-.++++++.++.
T Consensus 210 ~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 210 FFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 22223347777777763
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.94 E-value=0.017 Score=56.39 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=97.3
Q ss_pred CCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 004026 555 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 634 (778)
Q Consensus 555 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia~g 634 (778)
++|... . ..++|+|..++.. |. | +..-++...++.||+.||++|.|...|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~--~-~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GS--P-LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TC--S-SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CC--C-eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 579876 3 3578999998862 22 1 334566777899999999999999999999964 333333433
Q ss_pred CCCCceEEEEEecccCC-CCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCC--cccccCCceecCCCCCCCC
Q 004026 635 QDHGNCVSLLRASAINA-NQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 711 (778)
Q Consensus 635 ~~~gn~vsllr~~~~~~-~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~ 711 (778)
+.+..|.-......-+ ...+..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 3334443333332212 233555555433344466554433221110 011222 456788888888 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh--HhhhhhHHHHHHHHHhc
Q 004026 712 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 775 (778)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al~ 775 (778)
++|.+|.-+|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777654432 2233332 33344457777777664
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.42 E-value=0.034 Score=56.13 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccc
Q 004026 534 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 613 (778)
Q Consensus 534 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R 613 (778)
+.+.+...+..|.... ..+|... . ..++|+|..+...+. .|-+. ++..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~--~~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-K--KAKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-E--EETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-E--ECCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444444322 5679866 3 247899999865322 23343 45555699999999999999999
Q ss_pred hhhhhhcCCCCcceeeecccCCCCCceEEEEEecccC---CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCC
Q 004026 614 SEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 690 (778)
Q Consensus 614 ~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~d~ 690 (778)
.+||.... ..+.+-+| +..+.|--......- ....+.+++.....+..|.+++.-.||-+.+ .+
T Consensus 93 ~~Wd~~~~--~~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~ 159 (224)
T 1jss_A 93 LDWDRLMT--SLDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RP 159 (224)
T ss_dssp HHHCSSEE--EEEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CT
T ss_pred ccccccee--eEEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CC
Confidence 99996432 12333333 223344333332221 2345666666533345556666677776653 13
Q ss_pred CCc--ccccCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-HhhhhhHHH
Q 004026 691 AYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTV 767 (778)
Q Consensus 691 ~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li~~tv 767 (778)
.+| .++++||.|-|.... ..+|.+|.-+|+=... .+...-|.. +-..+-.++
T Consensus 160 g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~ 214 (224)
T 1jss_A 160 EFVRGYNHPCGWFCVPLKDS---------------------PSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFY 214 (224)
T ss_dssp TSEECEECSEEEEEEEETTE---------------------EEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecccEEEEEEcCCC---------------------CCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHH
Confidence 443 478999999883211 1367888665554333 233222222 122233477
Q ss_pred HHHHHHhc
Q 004026 768 QKIKAALQ 775 (778)
Q Consensus 768 ~~Ik~Al~ 775 (778)
+.++.++.
T Consensus 215 ~~Lr~~~~ 222 (224)
T 1jss_A 215 SDLRKGLR 222 (224)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77776653
No 91
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.28 E-value=0.076 Score=52.55 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=98.8
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
...+|... .. .++|+|..++..+ ..+...++..-++ +||+.||++|.|...|.+||.... +.--|
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~-----~~~vl 91 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDKK------TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-----ELYEQ 91 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEETT------TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-----EEEEE
T ss_pred CCCCcEEE-EE--CCCeEEEEeccCC------CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHh-----hEEEe
Confidence 45689977 32 4679999887522 1255667888898 999999999999999999996432 22112
Q ss_pred ccCCCCCceEEEEEecccCCCC-CceEEEEcccc--CCCCc--E-EEEeecchhhhhhhhcCCCCCC--cccccCCceec
Q 004026 632 AKGQDHGNCVSLLRASAINANQ-SSMLILQETCT--DAAGS--L-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 703 (778)
Q Consensus 632 a~g~~~gn~vsllr~~~~~~~~-~~~liLQes~t--d~sgs--~-vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~ 703 (778)
-. .|+.|.-......-+-. .+..++. ++. |..|. + ++.-.|+-+.+ ...+.. +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~-~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLR-QRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEE-EEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEE-EEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 11 12333333333211222 3455554 343 33442 3 44556665432 112344 45789999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh--HhhhhhHHHHHHHHHh
Q 004026 704 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 774 (778)
Q Consensus 704 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t--v~~li~~tv~~Ik~Al 774 (778)
|.+. ++|.+|.-.|+=.... .+..+.. +...+-.++++++.++
T Consensus 163 p~~~-----------------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~ 207 (214)
T 1ln1_A 163 SDGK-----------------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARAC 207 (214)
T ss_dssp ECSS-----------------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCC-----------------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8421 4688887777655432 2233222 3344445677777665
No 92
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.24 E-value=0.12 Score=51.87 Aligned_cols=193 Identities=15% Similarity=0.204 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHHHhh-hccc
Q 004026 533 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDER 611 (778)
Q Consensus 533 sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~~ 611 (778)
.-.++++.-+..+..-+. ...+|... . ...++|.|..++. +|. |.++ ++..-+++||+.||++| .|..
T Consensus 11 ~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~~ 79 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERME 79 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhccc
Confidence 445566655555554443 35689976 2 1246788999884 232 4444 45555699999999999 5888
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEe--cc--cC-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhh
Q 004026 612 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--IN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVM 685 (778)
Q Consensus 612 ~R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~--~~--~~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm 685 (778)
.|.+||.... ..+.+-+|. .+.. |++. .. .. ....+..+|.-...+ .+.+++. -.|+-+.+-
T Consensus 80 ~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P--- 147 (221)
T 3p0l_A 80 AMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMP--- 147 (221)
T ss_dssp GTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSC---
T ss_pred hhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCC---
Confidence 9999996432 233334442 2222 3332 11 11 234566666654344 3555554 445544321
Q ss_pred cCCCCCCc--ccccCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHhH-hhh
Q 004026 686 NGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNL 762 (778)
Q Consensus 686 ~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~tv-~~l 762 (778)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=.... +..--|..+ ...
T Consensus 148 --~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~~ 200 (221)
T 3p0l_A 148 --EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKGW----LPKSIINQVLSQT 200 (221)
T ss_dssp --CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCSS----CCHHHHHHHHHHH
T ss_pred --CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCCC----CCHHHHHHHHHHH
Confidence 113343 578999999884311 13688888877754433 332223332 233
Q ss_pred hhHHHHHHHHHhc
Q 004026 763 ISCTVQKIKAALQ 775 (778)
Q Consensus 763 i~~tv~~Ik~Al~ 775 (778)
+-.+++.++.++.
T Consensus 201 ~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 201 QVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 3358888888876
No 93
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.00 E-value=0.14 Score=51.46 Aligned_cols=196 Identities=9% Similarity=0.067 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHHH-Hhhhcc
Q 004026 532 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 610 (778)
Q Consensus 532 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf-~FLrd~ 610 (778)
+.-++.++.....|-.-+. ...+|... .. ..++++|..+...+ .|.+. ++..-+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3444444444444443333 24689877 32 23578888876531 23344 44445699999999 999999
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhc
Q 004026 611 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 686 (778)
Q Consensus 611 ~~R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~ 686 (778)
..|.+||.... .++.+-+|. .++.| +..+... . ....+.+++.-...+..+-+++...|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~~----~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRVE----DNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEET----TTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEecC----CCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999997432 133333332 22333 2222221 2 23346666664333434445566677665431
Q ss_pred CCCCC--CcccccCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhHHh-Hhhhh
Q 004026 687 GGDSA--YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 763 (778)
Q Consensus 687 G~d~~--~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv~t-v~~li 763 (778)
..+. -+.++++||.|-|.... .++|.+|.-+|+=.... +..--+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKGR----LPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCSS----SCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCCC----CCHHHHHHHHHHHH
Confidence 1122 24578999999983211 14688888777654432 22221222 23344
Q ss_pred hHHHHHHHHHhc
Q 004026 764 SCTVQKIKAALQ 775 (778)
Q Consensus 764 ~~tv~~Ik~Al~ 775 (778)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777664
No 94
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.97 E-value=0.11 Score=53.05 Aligned_cols=175 Identities=19% Similarity=0.271 Sum_probs=100.5
Q ss_pred CCCCceeccCCCCCCceEEEEccCCCCCCCCCccEEEEEEEeecccChhHH-HHhhhccccchhhhhhcCCCCcceeeec
Q 004026 553 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 631 (778)
Q Consensus 553 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~v-f~FLrd~~~R~eWd~ls~g~~vqe~~~i 631 (778)
...+|... . ..++|+|.+++.. .|.+ +..-++..-++.+|+.+ +++|.| |.+||.... .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 3 3678999999852 2332 23446677778777665 567777 999997543 23444444
Q ss_pred ccCCCCCceEEEEEecccCC-CCCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCcccccCCceecCCCCC
Q 004026 632 AKGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 708 (778)
Q Consensus 632 a~g~~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~ 708 (778)
. ..+.|--.......+ ...+..+|.-...| ..|++|| ...|+-+.+-. . |. =-+..+++||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g~--VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-GG--VRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-SS--EECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-Cc--EEEEEeccEEEEEECCC-
Confidence 2 233343333333222 33466666643345 3466665 34566544311 1 11 23467899999999521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhH-HhHhhhhhHHHHHHHHHhcc
Q 004026 709 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 776 (778)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv-~tv~~li~~tv~~Ik~Al~~ 776 (778)
++|.+|.-+|+=.... .+..+ ..+...+..++.+++.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888777765533 12223 11334444688888888753
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=94.58 E-value=0.25 Score=44.10 Aligned_cols=140 Identities=9% Similarity=-0.052 Sum_probs=80.7
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 422 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~ 422 (778)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|..--+ .+.. + +.+.-+..++... +
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~~~~--~~~~--~--g~~~~~~~~~~~~-~ 70 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTRSRW--VAVA--M--GKKVRWLEEEEWD-D 70 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEEEEE--EEEE--T--TEEEEEEEEEEEE-T
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccEEEE--EEEe--C--CceEEEEEEEEEc-C
Confidence 34567778899999999999999988875 3355555332 2321111 1111 1 2223344555432 3
Q ss_pred CceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 004026 423 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 502 (778)
Q Consensus 423 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~ 502 (778)
++.-++.. .+++ +. ..+.. -.-+++.++| |+|+|..+.+.....+..++.+++..-+.=+.++.++.
T Consensus 71 ~~~~i~~~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (147)
T 2d4r_A 71 ENLRNRFF-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKG 137 (147)
T ss_dssp TTTEEEEE-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEE-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111 1221 10 00111 1235677888 99999998887644455566666655555678889999
Q ss_pred HHHHHHHH
Q 004026 503 LQRQCECL 510 (778)
Q Consensus 503 LqR~cerl 510 (778)
|.+.+|..
T Consensus 138 lk~~~e~~ 145 (147)
T 2d4r_A 138 LEERVLAA 145 (147)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 98888864
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.22 E-value=0.17 Score=52.74 Aligned_cols=181 Identities=17% Similarity=0.246 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC-cc-c-CchhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEE
Q 004026 496 AQRWVATLQRQCECLAILMSTSVSARDH-TA-I-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 572 (778)
Q Consensus 496 A~rwla~LqR~cerla~~~~~~~~~~~~-~~-i-~~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~ 572 (778)
-||.-.++.|-==||.-- .|-+... .+ . .++-+.+=+.|+.-.+.....- ....+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEE-e--cCCCeEEE
Confidence 356655555543344331 3322222 21 2 3466667777776666544422 246789976 3 35789999
Q ss_pred EccCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc---
Q 004026 573 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--- 649 (778)
Q Consensus 573 ~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~--- 649 (778)
++.. + | .++-++..-+++||+.||++|.|...|.+||.... ..+.+-+|. ..+.| .+....
T Consensus 81 ~~~~---~----~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~--~~~vle~id----~~~iv--Y~~~~p~~~ 144 (258)
T 3fo5_A 81 TLED---D----K-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYR--SVELVQQVD----EDDAI--YHVTSPALG 144 (258)
T ss_dssp EEEC---S----S-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCC--EEEEEEEEE----TTEEE--EEEEECCCT
T ss_pred EEEC---C----C-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhcc--EEEEEEEcC----CCeEE--EEEecCCcc
Confidence 8642 2 2 45667777789999999999999999999996432 233444442 11333 233211
Q ss_pred CCCC-CceEEEEcccc-CCCCc-EEEE-eecchhhhhhhhcCCCCCCc--ccccCCceecCCC
Q 004026 650 NANQ-SSMLILQETCT-DAAGS-LVVY-APVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 706 (778)
Q Consensus 650 ~~~~-~~~liLQes~t-d~sgs-~vVy-APvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 706 (778)
..-. .+..+|.-.-+ +..|. +||. -.|+-+.+- .-+.+| ..+|+||.|-|.|
T Consensus 145 ~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 145 GHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp TCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 1222 35555553222 23453 5443 345543321 123334 6899999999954
No 97
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=89.27 E-value=3.8 Score=41.66 Aligned_cols=198 Identities=13% Similarity=0.162 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEccCCCCCCCCCccEE-EEEEEeecc-cChhHHHHhhhccc
Q 004026 534 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 611 (778)
Q Consensus 534 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~ 611 (778)
+-++.+..++.+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444433 234689977 3 35679999988632 2 2221 123344556 99999999999999
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc-CCCCCceEEEEccccC----CC---CcEEEEeecchhhhhh
Q 004026 612 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 683 (778)
Q Consensus 612 ~R~eWd~ls~g~~vqe~~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td----~s---gs~vVyAPvD~~~m~~ 683 (778)
.|.+||.... .++.+-.| +.++.|--...... -....+..++.....+ .. +-+++.-.++-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996321 12222222 11222332223221 1234566666643322 22 233444456544311
Q ss_pred hhcCCCCCCcc-----cccCCceecCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhccCCCcccccchhH
Q 004026 684 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV 756 (778)
Q Consensus 684 vm~G~d~~~v~-----lLPSGF~I~Pd-g~-~~~~~~~~~~~~~~~~~~~~~~~~gslLTvaFQil~~~~~~~~l~~~sv 756 (778)
..+.+|- .|.+||.|.|. |. ... . ..++|.+|.-.|+=.... .+..+
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~---------------~--~~~~t~vt~~~~~Dp~G~-----iP~~l 224 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEIS---------------R--DNILCKITYVANVNPGGW-----APASV 224 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCC---------------G--GGEEEEEEEEEEEECSSC-----CCHHH
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCcccc---------------c--CCCcEEEEEEEEeCCCCc-----cCHHH
Confidence 1122222 36789988883 22 111 0 125788888877755432 22222
Q ss_pred H-h-HhhhhhHHHHHHHHHh
Q 004026 757 E-T-VNNLISCTVQKIKAAL 774 (778)
Q Consensus 757 ~-t-v~~li~~tv~~Ik~Al 774 (778)
. . +...+-.++++++.++
T Consensus 225 vn~~~~~~~~~~l~~L~k~v 244 (255)
T 2e3n_A 225 LRAVAKREYPKFLKRFTSYV 244 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHH
Confidence 2 1 2233334666666544
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=87.68 E-value=4.8 Score=38.36 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=80.9
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeecee
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 421 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~ 421 (778)
..+.+|.-.+..+-+.+-|.+.|-+.+|.+ ..++++..+. ++ +.+++.+.-. ..++-+.-|+...-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 456678888999999999999999998875 4556665332 11 2233332211 22333344443332
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhcc---------ch
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIIS---------GM 492 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~s---------g~ 492 (778)
++.. +.. ..++. +++.. .+...|+ +++.++|.|+|+|.-++++....+..++.++..- -+
T Consensus 74 ~~~~-i~~-~~~~~--~gpf~-~~~g~w~------f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l 142 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--APIVG-HMSGEWR------AFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVV 142 (172)
T ss_dssp TTTE-EEE-EEEEC--CTTEE-EEEEEEE------EEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCChh-hcEEEEE------EEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHH
Confidence 2221 111 11110 11100 0111222 5666678999999999999887777777665421 12
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004026 493 GFGAQRWVATLQRQCECLAI 512 (778)
Q Consensus 493 afGA~rwla~LqR~cerla~ 512 (778)
.=+.+.-|+.|.+++|+.+.
T Consensus 143 ~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 143 ERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHh
Confidence 22234457777777776655
No 99
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=86.85 E-value=7.5 Score=37.06 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=77.5
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhh--cccccccCceeEEEeeec
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 419 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~--~~SpLvp~Re~~fLRyc~ 419 (778)
..+.+|.-.+.++-+++-|.++|-+.||.+ ...+|++.+ | . .+.+.|. +--- -.++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~--~----~--~~~~rl~~~~~~~--G~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRD--D----D--KVTFRLTMHPDAD--GKVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEEC--S----S--EEEEEEEECCCTT--SCCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecC--C----C--EEEEEEEEEeccC--ceEEEEEEEEEE
Confidence 456778888999999999999999998775 556667643 1 1 1223322 2111 124444556643
Q ss_pred eecCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 004026 420 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 499 (778)
Q Consensus 420 q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rw 499 (778)
. .++..+ +..+ ..+++ | +.+=...-+.+.++ .|+|+|.-+.++++.....+ +.+...+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 2 233222 2221 11223 2 22333444677777 49999999999976522111 01111111112334
Q ss_pred HHHHHHHHHHHHH
Q 004026 500 VATLQRQCECLAI 512 (778)
Q Consensus 500 la~LqR~cerla~ 512 (778)
|+.|++.+|+.+.
T Consensus 137 L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 137 MALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 7777777777654
No 100
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.75 E-value=0.25 Score=43.04 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhh
Q 004026 81 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 126 (778)
Q Consensus 81 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 126 (778)
.+||.++....-..+... ......++|+.+|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHHH
Confidence 468888876655555322 0123678999999999999999753
No 101
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.65 E-value=0.35 Score=40.83 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhh
Q 004026 88 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 126 (778)
Q Consensus 88 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 126 (778)
.+.|+.+|+..+.+.......|..+.+|+..|||-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 102
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=85.18 E-value=2.8 Score=38.54 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=81.2
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeecee
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 421 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~ 421 (778)
+.+..|...+..+-+.+.|.+.|-+.+|.+.. ++|++.+..|. |. -+.+++.+- .-+.++-+..|++.+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~----~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITG----MRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCC----CCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCe----eEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcC
Confidence 34567778899999999999999999888744 34554322111 11 133444432 2245666777887533
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 501 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 501 (778)
.+ ..|.-..+++ +.. .+...|+ +++.++| |+|++.-++|+... ++..+...-+.-.+++.+.
T Consensus 75 ~~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~ 136 (148)
T 1t17_A 75 DA--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIA 136 (148)
T ss_dssp TT--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHH
Confidence 33 2233333442 211 1122333 3567778 99999988887522 3334443333345677778
Q ss_pred HHHHHHHHH
Q 004026 502 TLQRQCECL 510 (778)
Q Consensus 502 ~LqR~cerl 510 (778)
++.+.|+.+
T Consensus 137 ~f~~r~~~~ 145 (148)
T 1t17_A 137 CFEARAQQL 145 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 103
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=84.85 E-value=11 Score=36.31 Aligned_cols=145 Identities=9% Similarity=0.063 Sum_probs=77.2
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeecee
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 421 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~ 421 (778)
..+.+|.-.+.++-+.+.|.++|-+.+|.++ ..++++.+. +. ..+...|++..--. .++|..-|.+ -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~----~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYA----EAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEE----EEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhhee----EEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 4566777788899999999999999998864 445555431 11 11111122222111 2233332321 1
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 501 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 501 (778)
.++..+.... ..+++ | +.+=...-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+
T Consensus 73 ~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~ 138 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANME 138 (169)
T ss_dssp GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHH
Confidence 2222221111 11112 2 122234556788888 9999999999875521 1111222222222345689
Q ss_pred HHHHHHHHHHHH
Q 004026 502 TLQRQCECLAIL 513 (778)
Q Consensus 502 ~LqR~cerla~~ 513 (778)
.|++.+|+.+..
T Consensus 139 ~LK~~aE~~~~~ 150 (169)
T 3tvq_A 139 RIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhh
Confidence 999999988764
No 104
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=83.46 E-value=14 Score=34.84 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=80.0
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeecee
Q 004026 342 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 421 (778)
Q Consensus 342 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~ 421 (778)
..+.+|.-.+..+-+.+.|.++|...||..+.- ...+ +|..+.+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 346678889999999999999999999987653 1111 233344445554432 234788889987654
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 501 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla 501 (778)
++ ..+ +..+. +++........ .-+++.++|.|+|+|.-+.|..- .+..++..++..-+.-.+++-+.
T Consensus 77 ~~-~~I--~~~~~---~g~~~~~l~g~------w~f~p~~~g~t~V~~~~~~e~~~-pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 77 EA-GKI--TWSPI---KGEGNGVVSGS------WTLSAKGDNATAVKFQTSAELTV-PLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TT-TEE--EEEEC---TTSTTEEEEEE------EEEEESSSSCEEEEEEEEEEEEE-CSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CC-CEE--EEEEe---cCccceeEEEE------EEEEECCCCeEEEEEEEEEEEcC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 33 322 22221 12210001222 33577788889999998888861 23334443332222334566666
Q ss_pred HHHHHH
Q 004026 502 TLQRQC 507 (778)
Q Consensus 502 ~LqR~c 507 (778)
+..+-+
T Consensus 144 af~~ra 149 (161)
T 3p9v_A 144 TYMANL 149 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.34 E-value=3 Score=36.13 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=33.7
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH----HHhhhhhc
Q 004026 136 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 205 (778)
Q Consensus 136 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~----r~~~~~~~ 205 (778)
.-..-..|+-+.+.|+.+|..+.++.. +.......|..||++||+|.. |+.++.+|
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~--------------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666666666655443 111133458899999999985 55665554
No 106
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.73 E-value=8.3 Score=31.63 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=30.7
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 136 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 136 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
++.....+..+.+.|..+|..|+..+ .+|..|+..||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 45556778888899999988888644 467888888887653
No 107
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=70.13 E-value=1.5 Score=45.43 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHH
Q 004026 143 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 196 (778)
Q Consensus 143 l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el 196 (778)
+++||++|+.||..|++.+. +.++|+.||++||+.|
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~------------------~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES------------------EVADLKKENKDLKESL 59 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 44555555555555554432 4456777888887754
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.02 E-value=15 Score=32.49 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=43.2
Q ss_pred ccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHH
Q 004026 114 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 193 (778)
Q Consensus 114 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk 193 (778)
||+..+|.-|=|-||+=.=|--.......-.++...|..++..|.. +..+|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7777777777776665544444444444444555666666666553 4567888889988
Q ss_pred HHHHHHhh
Q 004026 194 DELDRVCA 201 (778)
Q Consensus 194 ~el~r~~~ 201 (778)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876553
No 109
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=65.86 E-value=80 Score=28.80 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=62.2
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEE--Eeeecee
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 421 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~f--LRyc~q~ 421 (778)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| .. ...+.+ +.-+.+.-+. .+|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~---~~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KY---KADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EE---EEEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eE---EEEEEE--EeeeEEEEEEEEEEEEecC
Confidence 4567778999999999999999888865 455665421 11 111111 1112222221 2343334
Q ss_pred cCceEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 004026 422 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 488 (778)
Q Consensus 422 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 488 (778)
....|++.-..-+. .+ +.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555443332211 01 111 1111335666778899999877776433 345555555
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.75 E-value=11 Score=33.09 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=11.0
Q ss_pred hHHHHHhHHHHHhhHhHHh
Q 004026 141 SLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 141 ~~l~~en~~L~~en~~l~e 159 (778)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665554
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.15 E-value=21 Score=28.84 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHH
Q 004026 136 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 196 (778)
Q Consensus 136 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el 196 (778)
+......|..+.+.|..+|..|... ...|+.|++.||..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 4445667788888888888887763 345777777777653
No 112
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.58 E-value=13 Score=30.16 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHh
Q 004026 137 RHENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 137 r~e~~~l~~en~~L~~en~~l~e 159 (778)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777665
No 113
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.77 E-value=41 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=17.8
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhh
Q 004026 136 ERHENSLLRQENDKLRAENMSIRDAM 161 (778)
Q Consensus 136 ~r~e~~~l~~en~~L~~en~~l~e~~ 161 (778)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888887777643
No 114
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.54 E-value=26 Score=30.03 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.2
Q ss_pred HHHHhHHHHHhhHhHH
Q 004026 143 LRQENDKLRAENMSIR 158 (778)
Q Consensus 143 l~~en~~L~~en~~l~ 158 (778)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 115
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.13 E-value=9.7 Score=25.73 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.4
Q ss_pred HHhhhhhhhHHHHHHHHh
Q 004026 183 QHLRIENARLKDELDRVC 200 (778)
Q Consensus 183 ~~L~~EN~~Lk~el~r~~ 200 (778)
++|+..|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468889999999987543
No 116
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.99 E-value=17 Score=32.40 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCc
Q 004026 163 NPICTNCGGPAI 174 (778)
Q Consensus 163 ~~~C~~Cg~~~~ 174 (778)
...||-||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446999999764
No 117
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.61 E-value=36 Score=26.98 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHh
Q 004026 142 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 200 (778)
Q Consensus 142 ~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~ 200 (778)
.++.++..|.+.|.+|.+.+. +-+.|...|++||+++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 366777777777777777654 46678889999998864
No 118
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=45.25 E-value=83 Score=29.76 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=60.8
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceeeeehhhhcccccccCceeEEEeeeceec
Q 004026 343 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 422 (778)
Q Consensus 343 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vls~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyc~q~~ 422 (778)
.+..|...+.++-++|.|-..| .-+|.++..+. ++ .|.+|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e---~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK---KV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE---EE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE---EE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 4456677889999999999999 88898865433 33 34444445777665 1 1 1233 3333321100
Q ss_pred CceEEEEEEeccCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeecc
Q 004026 423 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 477 (778)
Q Consensus 423 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~~PSGclIq~~~-nG~skVtwVeH~e~d~ 477 (778)
-=+|-|++-.+-.. +. ..+..=+=.-+.+.+ +|.|.|+|--.++..+
T Consensus 71 ~~sY~ii~g~l~~~--~~------~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPSPVS--SG------EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECSTTSS--TT------TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCCccc--cc------ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 11455555211000 00 011111222245555 7899999998888764
No 119
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=44.31 E-value=15 Score=35.13 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
+...|+-+..||+.||+|++|...-.+|..
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999985
No 120
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=43.75 E-value=19 Score=32.27 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhH
Q 004026 79 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 130 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 130 (778)
+|.+||.++...+-..+.+...+. ..++|+.+|+++..|.-|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 466899999888777775554443 3468999999999999998665543
No 121
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=43.08 E-value=15 Score=31.13 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=31.2
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehh
Q 004026 77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 124 (778)
Q Consensus 77 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 124 (778)
|+.+..|+.++....-..+... ....++|+++|+++..|.-|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 4456679998866555555432 135688999999999999996
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.29 E-value=56 Score=27.43 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.4
Q ss_pred HhhhhhhhHHHHHH
Q 004026 184 HLRIENARLKDELD 197 (778)
Q Consensus 184 ~L~~EN~~Lk~el~ 197 (778)
.|+.++..|..|+.
T Consensus 54 ~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 54 QLRQKVRQLEEELR 67 (70)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 123
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.13 E-value=16 Score=28.72 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhh
Q 004026 80 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 125 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 125 (778)
|..||.++.......+... .+......++|+++|+++.+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468998877775555443 22122366899999999999999964
No 124
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=37.78 E-value=15 Score=32.14 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 35678899999999999999999999963
No 125
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.70 E-value=33 Score=30.70 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHH
Q 004026 137 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 197 (778)
Q Consensus 137 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~ 197 (778)
-+++-.|...++.+..||.+++..-... | .-.-++..+..+|+.||.+|+.|-+
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555432110 0 0011233466678888888887744
No 126
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.68 E-value=78 Score=24.14 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=15.4
Q ss_pred hHHHhhhhhhhHHHHHHHHhhh
Q 004026 181 EEQHLRIENARLKDELDRVCAL 202 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~~~ 202 (778)
++|.|..--+.|++|+.|+..-
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666677788888777643
No 127
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=36.00 E-value=0.72 Score=40.78 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHhhhC--CCCC-HHHHHHHHHhhccccceeeehhh
Q 004026 80 YHRHTPQQIQELESLFKEC--PHPD-EKQRLELSKRLCLETRQVKFWFQ 125 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~--~~Ps-~~~R~~LA~~LgLs~rQVkvWFQ 125 (778)
+.+||.++....-..+... .|++ .....++|+++|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468988876554444322 1333 24567899999999999999953
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.86 E-value=57 Score=28.34 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=15.8
Q ss_pred HhhhhhhhHHHHHHHHhhhhh
Q 004026 184 HLRIENARLKDELDRVCALAG 204 (778)
Q Consensus 184 ~L~~EN~~Lk~el~r~~~~~~ 204 (778)
.|..|++.||+|++++..+|.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888777764
No 129
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=33.57 E-value=16 Score=33.66 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.4
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
...++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3568889999999999999999999996
No 130
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=32.73 E-value=19 Score=32.74 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 46678899999999999999999999996
No 131
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.35 E-value=33 Score=35.53 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.1
Q ss_pred HHhhhhhhhHHHHHHHHh
Q 004026 183 QHLRIENARLKDELDRVC 200 (778)
Q Consensus 183 ~~L~~EN~~Lk~el~r~~ 200 (778)
++++.|..+||+|++++.
T Consensus 78 k~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 357789999999999977
No 132
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=32.29 E-value=2.7e+02 Score=24.73 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.3
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccc
Q 004026 344 TGMVIINSLALVETLMDPNRWAEMFPCM 371 (778)
Q Consensus 344 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 371 (778)
+..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3456667889999999999999988875
No 133
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.35 E-value=15 Score=26.88 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhh
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 129 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 129 (778)
.++.++...+...+... ....++|+.+|++...|.-|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666665556543 23568999999999999999865443
No 134
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.32 E-value=38 Score=28.64 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+++.|...|...|-.. ..-.++|..+|+++..|+.+...-|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47778888887754332 24678999999999999988876666665543
No 135
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=30.55 E-value=27 Score=32.34 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.7
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788999999999999999999999963
No 136
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.71 E-value=46 Score=24.05 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHhhhhhhhHHHHHHHHhhhh
Q 004026 182 EQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 182 ~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
...|..||..|.+|+.|+..+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 4478899999999999998875
No 137
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=28.66 E-value=35 Score=30.24 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEEEeecccChhHHHHhhhccccchhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEW 616 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eW 616 (778)
....+..++.||++||++|-|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457888999999999999999999999
No 138
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=28.46 E-value=27 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.8
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
...|..++.||+.||+++.|-.+..+|--
T Consensus 4 ~~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 4 HVVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 35688999999999999999999999964
No 139
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.84 E-value=1.9 Score=41.40 Aligned_cols=30 Identities=3% Similarity=-0.092 Sum_probs=21.7
Q ss_pred CCCcCCCCCCCHHHHHHHHHHhhhCCCCCH
Q 004026 74 PPRKKRYHRHTPQQIQELESLFKECPHPDE 103 (778)
Q Consensus 74 ~k~rr~RtrfT~~Ql~~LE~~F~~~~~Ps~ 103 (778)
.+.||.|+.|+..|++.|++.|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345778899999999999999999999874
No 140
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.11 E-value=68 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=9.4
Q ss_pred HhhhhhhhHHHHHHHHhh
Q 004026 184 HLRIENARLKDELDRVCA 201 (778)
Q Consensus 184 ~L~~EN~~Lk~el~r~~~ 201 (778)
+|..||..|+.|+.++..
T Consensus 41 ~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 41 ELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 141
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=27.05 E-value=35 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.7
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 4456788999999999999999999994
No 142
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=26.82 E-value=37 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.5
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 004026 591 ATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 591 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 143
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.11 E-value=54 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+++.|...+...| ....-.++|+.+|+++..|+.+.+.-|.|.|+..
T Consensus 109 ~L~~~~r~v~~~~~------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLTYLI------RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHHHHT------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777777776323 2235678999999999999988876555555443
No 144
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.05 E-value=37 Score=35.03 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=24.1
Q ss_pred HhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHHHHHHHHhhhh
Q 004026 146 ENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 146 en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
.+..+++||++|++++. +.++...++..|++|.+|+..++
T Consensus 20 ~~~~l~~eN~~Lk~e~~------------------~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLE------------------ELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp ------CTTTTHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788888887764 44455566777777888877764
No 145
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.63 E-value=15 Score=33.47 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=37.8
Q ss_pred ccccceeeehhhhhhhHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhHHHhhhhhhhHH
Q 004026 114 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 193 (778)
Q Consensus 114 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cg~~~~~~~~~~~~~~L~~EN~~Lk 193 (778)
||++.++.-.=|-||.-.=|...+.....-.++.+.|..++..|.. +..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~---------------------e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ---------------------EVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS---------------------TTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777776666555554443433444444444455555555544433 4456778888888
Q ss_pred HHHHHHh
Q 004026 194 DELDRVC 200 (778)
Q Consensus 194 ~el~r~~ 200 (778)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8876543
No 146
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.02 E-value=40 Score=23.98 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhh
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 126 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 126 (778)
.++.++...+...+... + ...++|+.+|++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777776555555433 2 3668999999999999988753
No 147
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=24.99 E-value=76 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=23.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHHH
Q 004026 88 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 137 (778)
Q Consensus 88 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 137 (778)
+....-.|+.+|||+..--.+ | =.|||.+||..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 445566799999998542111 1 14899999976654
No 148
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.94 E-value=52 Score=25.94 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhHHHHHHHHhhhhhcc
Q 004026 181 EEQHLRIENARLKDELDRVCALAGKF 206 (778)
Q Consensus 181 ~~~~L~~EN~~Lk~el~r~~~~~~~~ 206 (778)
+..-|+.||..||+||+.-+..+.|+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
No 149
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.92 E-value=84 Score=24.89 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=5.1
Q ss_pred HhhhhhhhHHHHH
Q 004026 184 HLRIENARLKDEL 196 (778)
Q Consensus 184 ~L~~EN~~Lk~el 196 (778)
.|+.||+.||.++
T Consensus 23 aLk~E~~eLk~k~ 35 (53)
T 2yy0_A 23 LLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 150
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.81 E-value=52 Score=28.88 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHH
Q 004026 80 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM 131 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~ 131 (778)
...+|+.|.+.|...++... -.++|+.+|+++..|+.+.++-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34689999999988765433 48899999999999998876544443
No 151
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=23.83 E-value=45 Score=31.42 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=26.9
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 004026 589 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 618 (778)
Q Consensus 589 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd~ 618 (778)
....|+.++.||+.||+++.|-....+|--
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P 35 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIFP 35 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHCS
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhCc
Confidence 567889999999999999999999999963
No 152
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.69 E-value=1.1e+02 Score=25.55 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHHHhh
Q 004026 185 LRIENARLKDELDRVCA 201 (778)
Q Consensus 185 L~~EN~~Lk~el~r~~~ 201 (778)
|..||..|++++..+..
T Consensus 48 l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666543
No 153
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.60 E-value=1.1e+02 Score=27.32 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 135 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~ 135 (778)
.+++.|...+...|-.. ..-.++|..+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888775433 23578999999999999999987777666544
No 154
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.66 E-value=39 Score=26.46 Aligned_cols=47 Identities=9% Similarity=-0.088 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 133 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kk 133 (778)
.+++.|...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888888765332 235789999999999999887655555443
No 155
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.21 E-value=99 Score=26.82 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=6.9
Q ss_pred hhhhhHHHHHHHHhhh
Q 004026 187 IENARLKDELDRVCAL 202 (778)
Q Consensus 187 ~EN~~Lk~el~r~~~~ 202 (778)
.|.++||+|.+++..+
T Consensus 52 eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 52 SEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 156
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.58 E-value=1.3e+02 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=19.5
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcC
Q 004026 140 NSLLRQENDKLRAENMSIRDAMRN 163 (778)
Q Consensus 140 ~~~l~~en~~L~~en~~l~e~~~~ 163 (778)
...|.++..+|+-||+.|++.+.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888999999999999999975
No 157
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.46 E-value=1e+02 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=11.3
Q ss_pred hhhHHHHHhHHHHHhhHhHHh
Q 004026 139 ENSLLRQENDKLRAENMSIRD 159 (778)
Q Consensus 139 e~~~l~~en~~L~~en~~l~e 159 (778)
.-..|..+.++|++||..|+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666555443
No 158
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=21.27 E-value=39 Score=30.44 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=25.1
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467888999999999999999999996
No 159
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.11 E-value=48 Score=28.43 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHH
Q 004026 80 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132 (778)
Q Consensus 80 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 132 (778)
-..+|+.|.+.|...++... -.++|+.+|+++..|+.+..+-|.|.+
T Consensus 25 l~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 25 LSGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp --CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 34589999999988755433 478999999999999877665444443
No 160
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=21.06 E-value=38 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.4
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 004026 592 TSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 592 tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 161
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.93 E-value=65 Score=27.60 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhh
Q 004026 79 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 127 (778)
Q Consensus 79 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 127 (778)
....+|+.|.+.|.-.++-. ...++|..|+++++.|+...++=
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 34569999999998877433 36889999999999998665543
No 162
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=20.91 E-value=40 Score=30.97 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=25.0
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3567889999999999999999999993
No 163
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.81 E-value=1.3e+02 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHhhccccceeeehhhhhhhHHHHHHH
Q 004026 82 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 136 (778)
Q Consensus 82 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 136 (778)
.+++.|...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887765332 235789999999999999998877777665443
No 164
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=20.46 E-value=64 Score=29.32 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 004026 590 AATSVWLPVSPQRLFNFLRDERLRSEWD 617 (778)
Q Consensus 590 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 617 (778)
...++-++.||.+||++|.|-.+..+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567889999999999999988888996
No 165
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.44 E-value=1.7e+02 Score=25.46 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=10.9
Q ss_pred HHHhhhhhhhHHHHHHHHhhhh
Q 004026 182 EQHLRIENARLKDELDRVCALA 203 (778)
Q Consensus 182 ~~~L~~EN~~Lk~el~r~~~~~ 203 (778)
..+|+.+.+.|+.|+..+..++
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444
Done!