Query 004028
Match_columns 778
No_of_seqs 258 out of 1099
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 4.4E-49 1.5E-53 422.4 24.3 246 360-615 20-318 (323)
2 2xph_A Sentrin-specific protea 100.0 7.7E-40 2.6E-44 337.6 19.4 183 370-582 42-224 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 3.2E-39 1.1E-43 330.4 21.9 182 371-582 31-212 (226)
4 2bkr_A Sentrin-specific protea 100.0 1.7E-38 5.7E-43 321.7 19.9 199 361-612 3-211 (212)
5 1euv_A ULP1 protease; SUMO hyd 100.0 3E-37 1E-41 315.0 19.5 180 370-609 31-217 (221)
6 2oix_A Xanthomonas outer prote 100.0 1.3E-32 4.3E-37 274.7 16.5 179 384-610 1-181 (186)
7 4ekf_A Adenain; alpha and beta 84.4 16 0.00055 36.6 13.5 125 465-611 52-179 (204)
8 4agy_A VP1 protein; picornavir 8.9 1.4E+02 0.0049 29.4 2.2 30 728-758 73-119 (181)
9 4gb3_1 Coat protein 1; capsid 5.3 2.9E+02 0.01 29.1 2.5 30 729-759 139-185 (281)
10 3k8u_A Putative ABC transporte 4.2 5.6E+02 0.019 23.3 3.4 23 546-568 8-30 (156)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-49 Score=422.41 Aligned_cols=246 Identities=35% Similarity=0.617 Sum_probs=196.5
Q ss_pred ceeeccCC-CCCceEEehhhhhccCCCCCcCHHHHHHHHHHHHH-hhcccccCcEEEechHHHHHhhccCCC----CCCc
Q 004028 360 EDVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD----PSSI 433 (778)
Q Consensus 360 ~~vvYp~~-d~~~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~-~~~~~~~~rv~~FnSfFy~kL~~~~k~----Pssl 433 (778)
..++||+. +.+++.|+.+||.||.+++||||+|||||++||.. +..++...++|+||||||.+|....+. ...+
T Consensus 20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~ 99 (323)
T 3eay_A 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNL 99 (323)
T ss_dssp EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCS
T ss_pred eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccc
Confidence 35789985 67899999999999999999999999999999964 444445678999999999999864321 1112
Q ss_pred chhhHHHHHHhhhhcccCCCCCCeEEEEeeccCceEEEEEecCCCccccc-----------------------cc-----
Q 004028 434 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VE----- 485 (778)
Q Consensus 434 ~d~~~~y~~VkrWtkkvdLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~-----------------------d~----- 485 (778)
+....+|.+|+|||+++|||+|||||||||.+.||+|+|||+|++..... |.
T Consensus 100 s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 179 (323)
T 3eay_A 100 SMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTT 179 (323)
T ss_dssp CHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------
T ss_pred hhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 23356899999999999999999999999999999999999997521100 00
Q ss_pred ------------------ccccCCCCCeEEEEcCCCCc-chhHHHHHHHHHHHHHHHhccCCcccccccccceeeecCCC
Q 004028 486 ------------------DLKRSEKVPCILHMDSIKGT-HAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEL 546 (778)
Q Consensus 486 ------------------d~~~s~k~p~Il~fDSL~~~-~~~l~~~L~~YL~~E~k~k~k~~~~D~s~~f~n~~~v~~~V 546 (778)
......|+|||+|||||++. +..+...|+.||..||+.|++.. .++. ...+....+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~-~~f~--~~~~~~~~~~~ 256 (323)
T 3eay_A 180 STLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH-RQFS--KTNMVDLCPKV 256 (323)
T ss_dssp --------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC-CCCC--TTTSCEECCBC
T ss_pred cccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC-cCCC--HhHceeccCCC
Confidence 01123578999999999986 56789999999999999886543 2332 12345556789
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHhcc
Q 004028 547 PQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISELLRNRS 615 (778)
Q Consensus 547 PQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL~~~~s 615 (778)
|||.|++|||||||+||++|+.++|.+|++. + ...+||++.+|+.||+.|++||++|..+.+
T Consensus 257 P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~-~------~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 257 PKQDNSSDCGVYLLQYVESFFKDPIVNFELP-I------HLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp CCCCSTTCHHHHHHHHHHHHHHSCCCCCCSS-C------BCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCcHHHHHHHHHHHHHhCCccccccc-c------ccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988742 2 126899999999999999999999998764
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=7.7e-40 Score=337.60 Aligned_cols=183 Identities=30% Similarity=0.587 Sum_probs=156.0
Q ss_pred CceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhcc
Q 004028 370 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK 449 (778)
Q Consensus 370 ~~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtkk 449 (778)
.++.|+.+|+.+|.+++||||+||+||++||.++......+++|+|+||||++|.. .+|.+|++|+++
T Consensus 42 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~------------~~~~~v~~w~~~ 109 (238)
T 2xph_A 42 FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKK 109 (238)
T ss_dssp TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT------------TCHHHHTTTTTT
T ss_pred CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhh------------cccHHHHHHhcc
Confidence 37899999999999999999999999999999876555567899999999999975 357899999999
Q ss_pred cCCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCc
Q 004028 450 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS 529 (778)
Q Consensus 450 vdLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~ 529 (778)
++||++++||||||.+.||+|+||+.+. ++|+|||||++.+......|+.||..+|+.+.+...
T Consensus 110 ~~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~ 173 (238)
T 2xph_A 110 VDVFSVDILLVPIHLGVHWCLAVVDFRK----------------KNITYYDSMGGINNEACRILLQYLKQESIDKKRKEF 173 (238)
T ss_dssp CCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred CCcccCCEEEEcccCCCceEEEEEEccc----------------ceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999754 589999999998888888899999999987755321
Q ss_pred ccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004028 530 EDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 582 (778)
Q Consensus 530 ~D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~ 582 (778)
+. ..|........++|||.|++|||||||+||++|+.+.|..|+|.+|+.+
T Consensus 174 -~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~ 224 (238)
T 2xph_A 174 -DT-NGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYF 224 (238)
T ss_dssp -CC-TTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHH
T ss_pred -Cc-ccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHH
Confidence 11 2343222346789999999999999999999999998888877666543
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.2e-39 Score=330.39 Aligned_cols=182 Identities=27% Similarity=0.609 Sum_probs=155.2
Q ss_pred ceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhccc
Q 004028 371 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 450 (778)
Q Consensus 371 ~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtkkv 450 (778)
++.|+.+|+.+|.+++||||+||+||++||.++..+...+++|+||||||.+|.. .+|.+|++|++++
T Consensus 31 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~------------~~~~~v~~w~~~~ 98 (226)
T 1th0_A 31 KLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKGV 98 (226)
T ss_dssp TEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTTC
T ss_pred CeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhh------------cccHHHHHHhhcC
Confidence 6899999999999999999999999999998876555567999999999999974 3578899999999
Q ss_pred CCCCCCeEEEEeeccCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcc
Q 004028 451 DIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSE 530 (778)
Q Consensus 451 dLFeKD~IfIPIN~nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~~ 530 (778)
++|++++||||||.+.||+|+||+.+. ++|+|||||++.+..+.+.|+.||..+++.+.+...
T Consensus 99 ~l~~~~~i~iPin~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~- 161 (226)
T 1th0_A 99 NLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL- 161 (226)
T ss_dssp CGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC-
T ss_pred CcccCCEEEEeEEeCcEEEEEEEEcCC----------------CceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCC-
Confidence 999999999999999999999998753 699999999998888889999999999987654321
Q ss_pred cccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhh
Q 004028 531 DVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKL 582 (778)
Q Consensus 531 D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~ 582 (778)
+. ..|....+.+.++|||.|++|||||||+||++++.+.|..|+|.+|+.|
T Consensus 162 ~~-~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~ 212 (226)
T 1th0_A 162 NL-LEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLF 212 (226)
T ss_dssp CG-GGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHH
T ss_pred Cc-ccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHH
Confidence 11 2343222335799999999999999999999999998888877766543
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=1.7e-38 Score=321.70 Aligned_cols=199 Identities=22% Similarity=0.360 Sum_probs=157.8
Q ss_pred eeeccCCCCCceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEec---hHHHHHhhccCCCCCCcchhh
Q 004028 361 DVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFN---SFFFRKLADLDKDPSSISDGK 437 (778)
Q Consensus 361 ~vvYp~~d~~~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~~~~rv~~Fn---SfFy~kL~~~~k~Pssl~d~~ 437 (778)
+++...+ ++.|+.+|+.+|.+++||||+||+||++||.++..++..+++|+|+ ||||..+.
T Consensus 3 ~~~l~~~---~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~------------- 66 (212)
T 2bkr_A 3 PVVLSYM---DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS------------- 66 (212)
T ss_dssp CEEEEET---TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC-------------
T ss_pred CEEEEEC---CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC-------------
Confidence 4555544 5899999999999999999999999999999987655578899999 89996553
Q ss_pred HHHHHHhhhhcccCCCCCCeEEEEeec-------cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHH
Q 004028 438 AAFLRVRKWTRKVDIFGKDYIFIPVNF-------NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLK 510 (778)
Q Consensus 438 ~~y~~VkrWtkkvdLFeKD~IfIPIN~-------nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~ 510 (778)
.+.+|++|++++++|++++||||||. +.||+|+||+.+. ++|+|||||++.+....
T Consensus 67 -~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~----------------~~i~~~DSl~~~n~~~~ 129 (212)
T 2bkr_A 67 -NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK----------------NSFFHYDSHSRSNSVHA 129 (212)
T ss_dssp -CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG----------------TEEEEECSSTTTTHHHH
T ss_pred -CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC----------------CeEEEEeCCCCCCHHHH
Confidence 15679999999999999999999995 7999999999764 58999999998876544
Q ss_pred HHHHHHHHHHHHHhccCCcccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCC
Q 004028 511 NLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDW 590 (778)
Q Consensus 511 ~~L~~YL~~E~k~k~k~~~~D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r~~l~~~W 590 (778)
..|..+|....+.+. ..+.+...++|||.|++|||||||+||++++.+.... .. +....|
T Consensus 130 ~~l~~~l~~~l~~~~-----------~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~-~~--------~~~~~~ 189 (212)
T 2bkr_A 130 KQVAEKLEAFLGRKG-----------DKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ-QT--------ESLLQL 189 (212)
T ss_dssp HHHHHHHHHHHSCTT-----------CCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC-CC--------CCHHHH
T ss_pred HHHHHHHHHHhCCcc-----------ccceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc-Cc--------cccccc
Confidence 444455444332111 0123456789999999999999999999999874211 00 012368
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 004028 591 FPPGEASLKRSLIQKLISELLR 612 (778)
Q Consensus 591 F~p~eis~kR~~I~~LI~eL~~ 612 (778)
|++.+++.+|++|+++|++|.+
T Consensus 190 ~~~~~i~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 190 LTPAYITKKRGEWKDLIATLAK 211 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999974
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=3e-37 Score=315.04 Aligned_cols=180 Identities=34% Similarity=0.592 Sum_probs=150.9
Q ss_pred CceEEehhhhhccCCCCCcCHHHHHHHHHHHHHhhcccccCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhc-
Q 004028 370 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR- 448 (778)
Q Consensus 370 ~~vsLt~~DL~~L~p~~WLND~IIdFYL~yL~~~~~~~~~~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtk- 448 (778)
+++.|+.+|+.+|.+++||||+||+||++||.+.. +++|+|+||||.+|.. .+|..|+||++
T Consensus 31 ~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-----~~~~~f~s~f~~~l~~------------~~~~~v~rw~~~ 93 (221)
T 1euv_A 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSE------------RGYQGVRRWMKR 93 (221)
T ss_dssp TTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHH------------HTGGGTTTTTGG
T ss_pred CCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-----CCeEEEEcHHHHHhhh------------hccHHHHHHHHh
Confidence 47999999999999999999999999999998653 5799999999999974 46889999997
Q ss_pred -ccCCCCCCeEEEEeecc-CceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcch----hHHHHHHHHHHHHHH
Q 004028 449 -KVDIFGKDYIFIPVNFN-LHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHA----GLKNLVQSYLCEEWK 522 (778)
Q Consensus 449 -kvdLFeKD~IfIPIN~n-sHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~----~l~~~L~~YL~~E~k 522 (778)
++++|++++||||||.+ .||+|+||+.+. ++|+|||||++.+. .+.+.|+.||..+++
T Consensus 94 ~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~ 157 (221)
T 1euv_A 94 KKTQIDKLDKIFTPINLNQSHWALGIIDLKK----------------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK 157 (221)
T ss_dssp GTSCGGGCSEEEEEEEETTTEEEEEEEETTT----------------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccCCEEEEEEEcCCCeEEEEEEEcCC----------------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 68999999999999985 999999999864 58999999986532 466788999998876
Q ss_pred HhccCCcccccccccceeeecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHH
Q 004028 523 ERHKDTSEDVSSKFLNFRFIPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSL 602 (778)
Q Consensus 523 ~k~k~~~~D~s~~f~n~~~v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~ 602 (778)
.+.+. + +++...++|||.|++|||||||+||++++.+.|+.| ++.++..+|..
T Consensus 158 ~~~~~-------~---~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f-----------------~~~d~~~~R~~ 210 (221)
T 1euv_A 158 HTIGE-------D---FDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDF-----------------DYKDAIRMRRF 210 (221)
T ss_dssp SSSCT-------T---CEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCC-----------------CHHHHHHHHHH
T ss_pred HhcCC-------C---ceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCc-----------------CHHHHHHHHHH
Confidence 54321 1 234567999999999999999999999999877655 44556678999
Q ss_pred HHHHHHH
Q 004028 603 IQKLISE 609 (778)
Q Consensus 603 I~~LI~e 609 (778)
|+.+|+.
T Consensus 211 i~~~Il~ 217 (221)
T 1euv_A 211 IAHLILT 217 (221)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9888864
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=1.3e-32 Score=274.66 Aligned_cols=179 Identities=17% Similarity=0.279 Sum_probs=128.8
Q ss_pred CCCCcCHHHHHHHHHHHHHhhccccc-CcEEEechHHHHHhhccCCCCCCcchhhHHHHHHhhhhcccCCCCCCeEEEEe
Q 004028 384 PDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPV 462 (778)
Q Consensus 384 p~~WLND~IIdFYL~yL~~~~~~~~~-~rv~~FnSfFy~kL~~~~k~Pssl~d~~~~y~~VkrWtkkvdLFeKD~IfIPI 462 (778)
+++||||+||+||++||.++..+... .++|||+|++...+... ....+.++++|++..++ |++|||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~---------~~~~~~~~~~~~~~~~~--~~~i~iPi 69 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSA---------DPDQQARAQRLLAGDDI--PPIVFLPI 69 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCS---------SHHHHHHHHHHHHSTTS--CSEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhC---------CHHHHHHHHHHcccccc--cCEEEEEE
Confidence 47899999999999999998754333 56999998776666432 12357788889887665 99999999
Q ss_pred ec-cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCcccccccccceee
Q 004028 463 NF-NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRF 541 (778)
Q Consensus 463 N~-nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~~D~s~~f~n~~~ 541 (778)
|. +.||+|+||+.+.+ ..|+|+|||||++.+.. ...|...|... .+.. .. ++
T Consensus 70 n~~~~HWsLlvi~~~~~-------------~~~~~~~~DSl~~~~~~-~~~l~~~l~~~----l~~~-------~~--~~ 122 (186)
T 2oix_A 70 NQPNAHWSLLVVDRRNK-------------DAVAAYHYDSMAQKDPQ-QRYLADMAAYH----LGLD-------YQ--QT 122 (186)
T ss_dssp EETTTEEEEEEEECSST-------------TSCEEEEECCCSSCCHH-HHHHHHHHHHH----TTCC-------GG--GC
T ss_pred eCCCCccEEEEEECCCC-------------eeeeeEEEcCCCCCCHH-HHHHHHHHHHH----hCCC-------cc--cc
Confidence 98 89999999998764 23677999999986543 22222222211 1111 00 23
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHH
Q 004028 542 IPLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLKLKKLSSFLNVDWFPPGEASLKRSLIQKLISEL 610 (778)
Q Consensus 542 v~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~dI~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL 610 (778)
...++|||.|++|||||||+||+++++.. .. ..+ ....||++.+++.+|+.|+++|.++
T Consensus 123 ~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~-~~------~~~---~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 123 HEMPIAIQSDGYSAGDHVLTGIEVLAHRV-LD------GTF---DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp EEECBCCCC--CCHHHHHHHHHHHHHHHH-HH------TCT---TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHH-hh------cCc---cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999998752 10 000 1246899999999999999999876
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=84.35 E-value=16 Score=36.55 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=68.0
Q ss_pred cCceEEEEEecCCCcccccccccccCCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHHHhccCCccccccccc-ceeee-
Q 004028 465 NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL-NFRFI- 542 (778)
Q Consensus 465 nsHWsLlVIc~P~~v~~~~d~d~~~s~k~p~Il~fDSL~~~~~~l~~~L~~YL~~E~k~k~k~~~~D~s~~f~-n~~~v- 542 (778)
+.||.-+..+ | +..+++.||.++-+..++.+ +-.-+|....+... +.+.-+ =++.+
T Consensus 52 GvHWiA~Aw~-P---------------~s~~~YmFDPfG~sd~~L~q----iY~F~Y~~llkRSA--L~sspdRCv~Lvk 109 (204)
T 4ekf_A 52 GVHWMAFAWN-P---------------RSKTCYLFEPFGFSDQRLKQ----VYQFEYESLLRRSA--IASSPDRCITLEK 109 (204)
T ss_dssp CCCEEEEEEE-T---------------TTTEEEEECTBTTCSHHHHH----HHHHHHHHHHHHHC--C--------EEEE
T ss_pred ceeEEEeEec-C---------------CcceEEEeCCCCCCHHHHHH----HhhhhHHHHHHHHh--hcCCCCceeEEEe
Confidence 4899888775 4 23589999999988775543 22334433211110 100000 01111
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHccCCCccChhh-hhhhcccccCCCCCchhhHHHHHHHHHHHHHHH
Q 004028 543 PLELPQQENSFDCGLFLLHYLELFLAEAPVSFSPLK-LKKLSSFLNVDWFPPGEASLKRSLIQKLISELL 611 (778)
Q Consensus 543 ~~~VPQQ~Ng~DCGVFVL~yaE~fl~~~P~~Ftq~d-I~~~r~~l~~~WF~p~eis~kR~~I~~LI~eL~ 611 (778)
..+.-|=.++--||+|-+.|+.+|..-+-.-++... |.-+....+.....|......|..-.+|-.=|.
T Consensus 110 stqsVQcp~SaACGLFC~lFL~aF~~~p~~pm~~Np~md~~~Gvp~~~l~~P~~~~~lh~NQe~LY~fl~ 179 (204)
T 4ekf_A 110 STQSVQGPNSAAAGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLE 179 (204)
T ss_dssp CCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCSSSSTTGGGCCCBCGGGTTCGGGHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCchhHHHHHHHHHHHHHhCCCCCCCCCCccccccCcCcccccCCcchHHHHHhHHHHHHHHH
Confidence 234445568999999999999999985322232111 222233334445667766666666544444443
No 8
>4agy_A VP1 protein; picornavirus, enterovirus, HEV-A; 6.09A {Human coxsackievirus A7} PDB: 4agx_A
Probab=8.89 E-value=1.4e+02 Score=29.40 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=21.2
Q ss_pred cceeEEeccCCCC-----------------ceeeeccCCCccccccCC
Q 004028 728 AEEYGYLAAGSNG-----------------FQQITELTPQVGSISFPS 758 (778)
Q Consensus 728 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 758 (778)
-=|+||+|.|.+. |.+ .|-+|...||||.+
T Consensus 73 ~~QimyvPPGap~P~~~~~~~Wqs~tNPSvf~~-~g~~p~~~sIPF~s 119 (181)
T 4agy_A 73 ILQYMYAPPGAPLPTRRDSYEWQTSTNPSIISK-MADPPAQVSVPFLS 119 (181)
T ss_dssp EEEEEEECSSSCCCSCSSSSTTSCCSSCEEEEE-SSSCCCEEEECCSS
T ss_pred EEEEEECCCCCCCCCCccccccccCCCCeEEEe-cCCCCceEEeeccC
Confidence 3578888887663 323 56777889999875
No 9
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=5.35 E-value=2.9e+02 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=22.5
Q ss_pred ceeEEeccCCCC-----------------ceeeeccCCCccccccCCC
Q 004028 729 EEYGYLAAGSNG-----------------FQQITELTPQVGSISFPSR 759 (778)
Q Consensus 729 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 759 (778)
-|+||+|.|-+. |.+ .|=.|++.||||.+-
T Consensus 139 ~Q~MyvPPG~p~P~~~d~~~Wqs~tNPSVf~~-~g~~p~r~sIPFms~ 185 (281)
T 4gb3_1 139 HQIMYVPPGGPVPDKVDSYVWQTSTNPSVFWT-EGNAPPRMSIPFLSI 185 (281)
T ss_dssp EEEEEECTTSCCCSSTTCGGGGCSSSCEEEEE-TTSCCCEEEECCCCS
T ss_pred EEEEecCCCCCCCCCCCCCcccCCCCcceeee-cCCCCceeeecccCc
Confidence 499999988653 555 466788899998753
No 10
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=4.24 E-value=5.6e+02 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHc
Q 004028 546 LPQQENSFDCGLFLLHYLELFLA 568 (778)
Q Consensus 546 VPQQ~Ng~DCGVFVL~yaE~fl~ 568 (778)
+-+|.+.+|||+-.|.++-.+..
T Consensus 8 ~~~Q~~~~dcglacLa~i~~~~g 30 (156)
T 3k8u_A 8 LVPQIDTRDCGPAVLASVAKHYG 30 (156)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHTT
T ss_pred eEECCCCCCHHHHHHHHHHHHhC
Confidence 44688889999999999877653
Done!