Query 004030
Match_columns 778
No_of_seqs 172 out of 327
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 2E-40 6.9E-45 295.1 -1.5 91 164-254 2-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.6E-38 5.5E-43 280.1 -3.4 83 169-251 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 99.9 1E-29 3.5E-34 210.6 0.6 59 169-227 2-60 (60)
4 1uad_C RSEC5, exocyst complex 37.8 29 0.001 30.5 4.1 41 677-719 5-46 (99)
5 2cxk_A Camta1, calmodulin bind 33.3 83 0.0028 27.7 6.2 47 679-726 6-52 (95)
6 1pby_A Quinohemoprotein amine 21.4 1.5E+02 0.0053 33.4 6.9 37 677-713 273-314 (489)
7 1jmx_A Amine dehydrogenase; ox 20.9 1.6E+02 0.0053 33.4 6.9 29 679-707 283-311 (494)
8 2ptm_A Hyperpolarization-activ 18.7 1.1E+02 0.0038 27.9 4.5 27 646-672 98-127 (198)
9 3fau_A NEDD4-binding protein 2 18.7 50 0.0017 27.7 1.9 31 584-615 51-81 (82)
10 2lau_A THAP domain-containing 16.6 49 0.0017 27.6 1.3 10 171-180 5-14 (81)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2e-40 Score=295.08 Aligned_cols=91 Identities=60% Similarity=1.044 Sum_probs=80.4
Q ss_pred CCCCCCCCCcccCCChhhhccchhhhccccccccccCCcEEeECCccchHhhhhccCCCCCCccCccchHHHHHhhHHhh
Q 004030 164 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR 243 (778)
Q Consensus 164 ~~g~~~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~hn~R 243 (778)
++|++..++||||||.+||+.+|.||+||||||+|+||++|+|+|+++||||||+|||+|+|||+.|||||+||++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccc
Q 004030 244 RRKTQPEDITS 254 (778)
Q Consensus 244 RRk~qp~~~~~ 254 (778)
|||++++..++
T Consensus 82 RRk~~~~~~~~ 92 (94)
T 1ul4_A 82 RRKSSGESGPS 92 (94)
T ss_dssp CCSCCCC----
T ss_pred hccCCCCcCCC
Confidence 99999998753
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.6e-38 Score=280.11 Aligned_cols=83 Identities=43% Similarity=0.919 Sum_probs=78.3
Q ss_pred CCCCcccCCChhhhccchhhhccccccccccCCcEEeECCccchHhhhhccCCCCCCccCccchHHHHHhhHHhhhccCC
Q 004030 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQ 248 (778)
Q Consensus 169 ~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~hn~RRRk~q 248 (778)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||||..
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred Ccc
Q 004030 249 PED 251 (778)
Q Consensus 249 p~~ 251 (778)
.+.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 553
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.95 E-value=1e-29 Score=210.56 Aligned_cols=59 Identities=75% Similarity=1.229 Sum_probs=57.1
Q ss_pred CCCCcccCCChhhhccchhhhccccccccccCCcEEeECCccchHhhhhccCCCCCCcc
Q 004030 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227 (778)
Q Consensus 169 ~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 227 (778)
+.++||||||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46799999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=37.78 E-value=29 Score=30.51 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=33.1
Q ss_pred CCCCeeeEecceEEecCCeEEEEEEeeccCCCCceE-EEeecCc
Q 004030 677 WSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKI-HCTFMGG 719 (778)
Q Consensus 677 ~~~P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRl-Lcs~~Gk 719 (778)
.-.|+|..++|..-..| +.++++|.||......| -+.+.|.
T Consensus 5 ~p~P~It~i~P~~Gp~G--T~vTI~G~nlg~~~sdv~~V~vgg~ 46 (99)
T 1uad_C 5 RQPPLVTGISPNEGIPW--TKVTIRGENLGTGPTDLIGLTICGH 46 (99)
T ss_dssp CCCCEEEEEESSEESTT--CEEEEEEECSCSSGGGEEEEEETTE
T ss_pred CCCCEEEEEECCCcCCC--CEEEEEEEeCCCCcccceEEEECCE
Confidence 34689999999988665 99999999998876655 4777774
No 5
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=33.27 E-value=83 Score=27.74 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCeeeEecceEEecCCeEEEEEEeeccCCCCceEEEeecCceeeeeec
Q 004030 679 SPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVT 726 (778)
Q Consensus 679 ~P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~E~~ 726 (778)
.=.|..++|-+-..+..+.+.|.|.+|.. +.++-|.|.+.-..+|..
T Consensus 6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-gs~~~~~fG~~~vpa~~~ 52 (95)
T 2cxk_A 6 SGMVTDYSPEWSYPEGGVKVLITGPWQEA-SNNYSCLFDQISVPASLI 52 (95)
T ss_dssp CSCCCEEECSEECTTCCCEEEEESSCCCC-SSCEEEEETTEEEECEEE
T ss_pred cEEEEEECCCcccCCCCEEEEEEeECCCC-CccEEEEECCEEEeEEEe
Confidence 34799999999999999999999999965 458999998866556664
No 6
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=21.38 E-value=1.5e+02 Score=33.43 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=32.7
Q ss_pred CCCCeeeEecceEEecCCeEEEEEEeeccCC-----CCceEE
Q 004030 677 WSSPELISVSPLAVVGGQELSFKLRGRNLTN-----LGTKIH 713 (778)
Q Consensus 677 ~~~P~I~sV~PiAv~ag~~~~f~v~G~NL~~-----p~tRlL 713 (778)
...|+|+.|.|-++.+|.+++++|-|.+|.. ++-+++
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g~~~l~~gv~v~ 314 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGSDLTLPEGVAGS 314 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCSCEECCTTEEEE
T ss_pred CCCceEEEeChhhhcCCCceEEEEEecccccccccCCceEEE
Confidence 6789999999999999999999999999996 445555
No 7
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=20.89 E-value=1.6e+02 Score=33.45 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=28.3
Q ss_pred CCeeeEecceEEecCCeEEEEEEeeccCC
Q 004030 679 SPELISVSPLAVVGGQELSFKLRGRNLTN 707 (778)
Q Consensus 679 ~P~I~sV~PiAv~ag~~~~f~v~G~NL~~ 707 (778)
.|+|+.|.|-++.+|.+++++|-|.+|..
T Consensus 283 ~~~~~av~p~~~~ag~~~~~~i~G~gl~g 311 (494)
T 1jmx_A 283 KARLLAVQPAFIKAGGESEITLVGSGLAG 311 (494)
T ss_dssp SCEEEEEESSEEETTCEEEEEEEEESCCS
T ss_pred CceEEEEChhhhcCCCceEEEEEeccccc
Confidence 99999999999999999999999999996
No 8
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=18.72 E-value=1.1e+02 Score=27.94 Aligned_cols=27 Identities=11% Similarity=0.386 Sum_probs=17.8
Q ss_pred ccccceEEEEe---CceeEEeeCCeEEEee
Q 004030 646 FWRNARFLVHT---GKQLASHKDGNIRVCK 672 (778)
Q Consensus 646 fWr~G~~lVqv---~~qla~v~dG~vvl~~ 672 (778)
....|.++++- .+.+.++..|.|.+..
T Consensus 98 ~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~ 127 (198)
T 2ptm_A 98 VFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127 (198)
T ss_dssp EECTTCEEECTTSCCSEEEEEEECCEEEEC
T ss_pred eeCCCCEEEECCCcCcEEEEEEeCEEEEEe
Confidence 34456666654 3567888999887764
No 9
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=18.70 E-value=50 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=23.6
Q ss_pred chhhHHHHHHHhhCCCccccccccCCceEEee
Q 004030 584 PGTLRKEIYNWLSNSPSEMESYIRPGCVILSL 615 (778)
Q Consensus 584 P~~LR~QI~~WLs~~P~dmEgYIRPGCviLTI 615 (778)
...||..|.+||...|-..+. .-|||+.+.+
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 356999999999998866543 5899988764
No 10
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=16.58 E-value=49 Score=27.59 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=8.1
Q ss_pred CCcccCCChh
Q 004030 171 PMCQVDNCKE 180 (778)
Q Consensus 171 ~~CQVdGC~~ 180 (778)
..|-|.||..
T Consensus 5 ~~C~v~gC~n 14 (81)
T 2lau_A 5 FTCCVPGCYN 14 (81)
T ss_dssp CSCCCSSSSS
T ss_pred CEEEeCCCcC
Confidence 5799999964
Done!