Your job contains 1 sequence.
>004031
MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEV
YAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVF
PSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF
IWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP
SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWR
SVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETAS
GLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVR
QQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIR
TDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSM
LRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDS
SGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTF
VKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL
GDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004031
(778 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 1645 1.5e-268 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 1490 4.6e-229 4
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 1062 3.4e-143 3
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 941 3.1e-138 3
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 797 1.7e-111 3
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 760 1.9e-110 3
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 766 9.2e-107 3
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 728 2.7e-99 3
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 692 2.4e-98 3
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 713 2.4e-89 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 683 2.5e-83 3
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 582 1.8e-72 2
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 575 6.0e-72 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 554 1.8e-70 2
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 555 2.9e-70 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 545 2.6e-69 2
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 379 8.8e-66 4
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 399 5.4e-58 3
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 359 7.4e-54 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 362 3.3e-39 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 262 1.4e-21 1
TAIR|locus:2090527 - symbol:IAA31 "indole-3-acetic acid i... 144 6.4e-09 1
TAIR|locus:2180557 - symbol:IAA28 "AT5G25890" species:370... 130 7.2e-09 2
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 144 6.6e-07 1
TAIR|locus:2051154 - symbol:IAA13 "auxin-induced protein ... 136 7.6e-07 2
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 145 1.8e-06 2
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 137 4.5e-06 1
UNIPROTKB|Q5VRR0 - symbol:IAA20 "Auxin-responsive protein... 122 7.5e-06 2
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 130 3.2e-05 1
TAIR|locus:2197838 - symbol:IAA12 "indole-3-acetic acid i... 126 3.7e-05 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 129 4.1e-05 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 128 5.7e-05 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 124 6.7e-05 1
TAIR|locus:2170862 - symbol:ATAUX2-11 "AT5G43700" species... 119 7.3e-05 1
UNIPROTKB|Q652A1 - symbol:IAA26 "Auxin-responsive protein... 103 0.00016 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 124 0.00016 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 122 0.00017 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 123 0.00022 1
TAIR|locus:2098023 - symbol:IAA30 "indole-3-acetic acid i... 113 0.00024 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 120 0.00025 1
TAIR|locus:2196573 - symbol:IAA5 "indole-3-acetic acid in... 111 0.00026 1
UNIPROTKB|Q7Y1H8 - symbol:IAA14 "Auxin-responsive protein... 115 0.00032 1
TAIR|locus:2041324 - symbol:IAA20 "indole-3-acetic acid i... 111 0.00032 2
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 119 0.00040 3
UNIPROTKB|Q6K846 - symbol:IAA9 "Auxin-responsive protein ... 112 0.00051 1
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 1645 (584.1 bits), Expect = 1.5e-268, Sum P(3) = 1.5e-268
Identities = 313/395 (79%), Positives = 344/395 (87%)
Query: 30 GPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQ 89
G + + P++ +++ + ADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPSKQ
Sbjct: 62 GHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQ 121
Query: 90 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHI 149
P+NYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFRHI
Sbjct: 122 PSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHI 181
Query: 150 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSS 209
FRGQPKRHLLTTGWSVFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVLSS
Sbjct: 182 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSS 241
Query: 210 DSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLF 269
DSMHIGLL TNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRMLF
Sbjct: 242 DSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLF 301
Query: 270 ETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 329
ETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF
Sbjct: 302 ETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 361
Query: 330 PMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQ-GLTTLNFQSLGMFPWM 388
PMYPSLFPLRLKRPWH TSS D R + SGL WLRGG GEQ GL LN+ S+G+FPWM
Sbjct: 362 PMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFPWM 421
Query: 389 QQRVEPSFLGNDHNQQYQAMLAAGMQS---GDPVR 420
QQR++ S +G D+NQQYQAMLAAG+Q+ GDP+R
Sbjct: 422 QQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLR 456
Score = 729 (261.7 bits), Expect = 1.5e-268, Sum P(3) = 1.5e-268
Identities = 158/281 (56%), Positives = 191/281 (67%)
Query: 473 YHDALQIRTDELLQ-RQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLL 531
Y +A +++ L Q +QQS +PSPSF K++F DSS + + + SP G GNLL
Sbjct: 534 YLNAFKMQNGHLQQWQQQSEMPSPSFMKSDFTDSSNKFATTASPAS--------GDGNLL 585
Query: 532 NFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNS 591
NFS G S+L P+Q + P F +SLP +Y GK A+ N QN
Sbjct: 586 NFSITGQSVL----PEQLTTEGWSPKASNTFSEPLSLPQAYPGKSLALEPGN----PQNP 637
Query: 592 VVFGVHIDSSGLLLPTTVSSFTTSV-DPGVSSMPLGDSGFHNSMYGCMQDSS-ELLHNVG 649
+FGV DS GL LP+TV F +S D S M L DSGF NS+Y CMQD++ ELLH G
Sbjct: 638 SLFGVDPDS-GLFLPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHELLHGAG 696
Query: 650 QIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLV 709
QI+ T+ FVKVYKSGSVGRSLDISRFSSY+ELREELG+MF IEG EDPLRSGWQLV
Sbjct: 697 QINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLV 756
Query: 710 FVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 750
FVD+END+LLLGDDPWE+FV+NVWYIKILSPEDV +MG+ G
Sbjct: 757 FVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
Score = 250 (93.1 bits), Expect = 1.5e-268, Sum P(3) = 1.5e-268
Identities = 51/74 (68%), Positives = 57/74 (77%)
Query: 1 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETD-E 59
MKLSTSGL QQGHEG+ KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQ T+ E
Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59
Query: 60 VYAQMTLQPLSPEE 73
V + P P +
Sbjct: 60 VDGHIPNYPSLPPQ 73
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 1490 (529.6 bits), Expect = 4.6e-229, Sum P(4) = 4.6e-229
Identities = 286/371 (77%), Positives = 315/371 (84%)
Query: 53 ADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVP 112
ADVETDEVYAQMTLQPL+ +EQKD ++P ELG+PS+QPTNYFCKTLTASDTSTHGGFSVP
Sbjct: 88 ADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVP 147
Query: 113 RRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRL 172
RRAAEKVFP LD+S QPPAQEL+ARDLHD EWKFRHIFRGQPKRHLLTTGWSVFVSAKRL
Sbjct: 148 RRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRL 207
Query: 173 VAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFTV 232
VAGDSVLFIWN+KNQLLLGIRRA RP TVMPSSVLSSDSMH+GLL TNS FT+
Sbjct: 208 VAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTI 267
Query: 233 FFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPV 292
F+NPRASPSEFVIPL KYVKAV+HTRVSVGMRFRMLFETEESSVRRYMGTITGI DLDP
Sbjct: 268 FYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPT 327
Query: 293 RWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFN 352
RW+NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS FPLRLKRPW P SF+
Sbjct: 328 RWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFH 387
Query: 353 DNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAG 412
+++ G++ ++GL +LNFQ +G+ PWMQ R++ S L N YQAM AA
Sbjct: 388 GLKEDDM-GMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTSGLLGMQNDVYQAMAAAA 446
Query: 413 MQS--G-DPVR 420
+Q G DP +
Sbjct: 447 LQDMRGIDPAK 457
Score = 515 (186.3 bits), Expect = 4.6e-229, Sum P(4) = 4.6e-229
Identities = 119/251 (47%), Positives = 163/251 (64%)
Query: 534 SGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVV 593
SGAG + + Q LG + S V +++SLP G++ ++ E +D + ++
Sbjct: 666 SGAGNNNTQSVLEQ--LGQSHT-SNVPP--NAVSLPPFPGGRECSIEQEGSASDPHSHLL 720
Query: 594 FGVHIDSSGLLLPTTVSSFTT-SVDPGVSS-MPLGDSGFHNSMYG---------CMQDSS 642
FGV+IDSS LL+P +S+ + ++ G S+ +P S F+N G C+ D S
Sbjct: 721 FGVNIDSSSLLMPNGMSNLRSIGIEGGDSTTLPFTSSNFNNDFSGNLAMTTPSSCI-DES 779
Query: 643 ELLHNVGQIDQLTP-TRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDP 701
L + + P + TFVKVYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP
Sbjct: 780 GFLQSSENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDP 839
Query: 702 LRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE--SFSPSSG 759
+RSGWQLVFVDRENDVLLLGDDPW FVS+VW IKILSP++VQ+MG++G+E + +PSS
Sbjct: 840 VRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSN 899
Query: 760 Q--RANSRGNC 768
+ S GNC
Sbjct: 900 NVDKLPSNGNC 910
Score = 215 (80.7 bits), Expect = 4.6e-229, Sum P(4) = 4.6e-229
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 1 MKLSTSGLCQQGHE--GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETD 58
M+LS++G Q HE G+ + LNSELWHACAGPLVSLP VG+RVVYFPQGHSEQ T+
Sbjct: 1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 60
Query: 59 -EVYAQMTLQP-LSPE 72
EV A + P L P+
Sbjct: 61 KEVDAHIPNYPSLHPQ 76
Score = 54 (24.1 bits), Expect = 3.0e-177, Sum P(3) = 3.0e-177
Identities = 43/191 (22%), Positives = 74/191 (38%)
Query: 494 SPSFS-KANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQ-SLG 551
SP FS ++ + + +S Q L + L S L QQ QQ S
Sbjct: 468 SPGFSMQSPSLVQPQMLQQQLSQQQQQLSQQQQQQQQL---SQQQQQQLSQQQQQQLSQQ 524
Query: 552 SKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDS-SGLLLPTTVS 610
+ + SQ + + +P ++ + A N + Q V H S S + + +S
Sbjct: 525 QQQQLSQQQQQQAYLGVPETHQPQSQAQSQSNNHLSQQQQQVVDNHNPSASSAAVVSAMS 584
Query: 611 SFTTSVDPGVSSMPLGDSGFHNSMYGCMQDS-SELLHNVGQIDQLTPTRTFVKVYKSGSV 669
F ++ P S PL S+ C Q S S+ N G + ++P T + +
Sbjct: 585 QFGSASQPNTS--PLQSM---TSL--CHQQSFSDT--NGGN-NPISPLHTLLSNFSQDES 634
Query: 670 GRSLDISRFSS 680
+ L ++R +S
Sbjct: 635 SQLLHLTRTNS 645
Score = 43 (20.2 bits), Expect = 4.6e-229, Sum P(4) = 4.6e-229
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 503 MDSSTEISVSISPMQNMLGSLP-EGSGNLLNFSGA------GPSMLRQQFPQQSLGSKYE 555
M + +++ + +Q+M G P + + +LL F + PS+++ Q QQ L + +
Sbjct: 434 MQNDVYQAMAAAALQDMRGIDPAKAAASLLQFQNSPGFSMQSPSLVQPQMLQQQLSQQQQ 493
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 1062 (378.9 bits), Expect = 3.4e-143, Sum P(3) = 3.4e-143
Identities = 214/392 (54%), Positives = 272/392 (69%)
Query: 36 PTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYF 94
P + ++++ + AD ETDEVYAQMTLQP++ + ++ + ++G+ ++QPT +F
Sbjct: 68 PNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYD-REALLASDMGLKLNRQPTEFF 126
Query: 95 CKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQP 154
CKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQE++A+DLHD W FRHI+RGQP
Sbjct: 127 CKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQP 186
Query: 155 KRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHI 214
KRHLLTTGWSVFVS KRL AGDSVLF+ +EK+QL+LGIRRA R + SSV+SSDSMHI
Sbjct: 187 KRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHI 246
Query: 215 GLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEES 274
G+L +S FT+FFNPRASPSEFV+PL KY KA++ +VS+GMRFRM+FETE+
Sbjct: 247 GILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALY-AQVSLGMRFRMMFETEDC 305
Query: 275 SVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS 334
VRRYMGT+TGISDLDPVRW S WR+++VGWDESTAG+R RVS+WEIEP+ T P Y
Sbjct: 306 GVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVIT-PFY-- 362
Query: 335 LFPLRLKRPWHPSTSSFNDNR-D-ETA--SGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQ 390
+ P RP +P D+ D E A + W+ G + + F L + WM
Sbjct: 363 ICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSM 422
Query: 391 RVEPSFLGNDHNQQYQAM----LAAGMQSGDP 418
+ G+ Q A+ L S DP
Sbjct: 423 QQNNPLSGSATPQLPSALSSFNLPNNFASNDP 454
Score = 330 (121.2 bits), Expect = 3.4e-143, Sum P(3) = 3.4e-143
Identities = 90/229 (39%), Positives = 130/229 (56%)
Query: 537 GPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNT--DSQNSVVF 594
GP +Q FP S G + Q ++++ P G AV ++ + D QN V
Sbjct: 844 GPVQQQQTFPLPSFGFDGD-CQSHHPRNNLAFP----GNLEAVTSDPLYSQKDFQNLVP- 897
Query: 595 GVHIDSSGLLLPTTVSSFTTSVDP-GVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQI-- 651
+ ++ + T +SS S G+ S+P G N + G + DS + N G +
Sbjct: 898 --NYGNTPRDIETELSSAAISSQSFGIPSIPF-KPGCSNEVGG-INDSG--IMNGGGLWP 951
Query: 652 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFV 711
+Q RT+ KV K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+
Sbjct: 952 NQTQRMRTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYT 1011
Query: 712 DRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQ 760
D END+LL+GDDPWE FV+ V IKILS +VQ+M G + P++ Q
Sbjct: 1012 DHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGDLAAIPTTNQ 1060
Score = 192 (72.6 bits), Expect = 8.4e-41, Sum P(3) = 8.4e-41
Identities = 50/105 (47%), Positives = 61/105 (58%)
Query: 1 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEV 60
MK ++G +EG+ K +NS+LWHACAGPLVSLP VG+ VVYFPQGHSEQ V
Sbjct: 1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQ-------V 53
Query: 61 YAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTST 105
A M ++Q D F+P +PSK TL A DT T
Sbjct: 54 AASM-------QKQTD-FIPNYPNLPSKLICLLHSVTLHA-DTET 89
Score = 44 (20.5 bits), Expect = 3.4e-143, Sum P(3) = 3.4e-143
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 471 HMYHDALQIRTDELLQRQQSNLPSPS 496
H L +L +QQS+ PSPS
Sbjct: 618 HSLQQNLSQNPQQLQMQQQSSKPSPS 643
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 941 (336.3 bits), Expect = 3.1e-138, Sum P(3) = 3.1e-138
Identities = 181/297 (60%), Positives = 225/297 (75%)
Query: 53 ADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PSKQPTNYFCKTLTASDTSTHGGFS 110
AD ++DE+YAQM+LQP+ E +D F + G+ SK PT +FCKTLTASDTSTHGGFS
Sbjct: 117 ADKDSDEIYAQMSLQPVHSE--RDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFS 174
Query: 111 VPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 170
VPRRAAEK+FP LD+S QPP QEL+ RDLH+ W FRHI+RGQPKRHLLTTGWS+FV +K
Sbjct: 175 VPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSK 234
Query: 171 RLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCF 230
RL AGDSVLFI +EK+QL++G+RRA R T +PSSVLS+DSMHIG+L + F
Sbjct: 235 RLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPF 294
Query: 231 TVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD 290
+F+NPRA P+EFVIPL KY KA+ +++SVGMRF M+FETE+S RRYMGTI GISDLD
Sbjct: 295 LIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLD 354
Query: 291 PVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPS 347
P+RW S WR+++V WDE ++ RVS W+IE + ++PSL LKR HPS
Sbjct: 355 PLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTS-GLKRQLHPS 410
Score = 297 (109.6 bits), Expect = 3.1e-138, Sum P(3) = 3.1e-138
Identities = 99/293 (33%), Positives = 140/293 (47%)
Query: 479 IRTDELLQRQQSNLPSPSFS-KANFMDSSTEISVSISPMQN---MLGSLPEGSGNLLNFS 534
+ TDEL Q S+ S + S K F+ SS + S + P + + + N L F
Sbjct: 609 LETDELTS-QVSSFQSLAGSYKQPFILSSQDSSAVVLPDSTNSPLFHDVWDTQLNGLKFD 667
Query: 535 GAGPSMLRQQFPQQSLG-SKYEPSQVRDFVHSMSLPSSYNG-KDAAVGTE--NCNTDSQN 590
P M + + Q++ S S + D S ++ + KD C + N
Sbjct: 668 QFSPLMQQDLYASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNHPSGCLVGNNN 727
Query: 591 SVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNV-G 649
+ F + S T +SF S P G S D L N G
Sbjct: 728 TS-FAQDVQSQ-----ITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKG 781
Query: 650 QIDQ--LTP-TRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 706
Q TP RT+ KV K+GSVGRS+D++ F Y EL+ + MFG+EG P SGW
Sbjct: 782 SSWQKIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGW 841
Query: 707 QLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSG 759
+LV+VD E+DVLL+GDDPWE FV V I+ILSP +VQ+M E+G++ + S+G
Sbjct: 842 KLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLN-SAG 893
Score = 151 (58.2 bits), Expect = 3.1e-138, Sum P(3) = 3.1e-138
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVET 57
+NSELWHACAGPLV LP VG+ V YF QGHSEQ V T
Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVST 88
Score = 52 (23.4 bits), Expect = 1.9e-112, Sum P(3) = 1.9e-112
Identities = 33/140 (23%), Positives = 50/140 (35%)
Query: 488 QQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQ 547
Q+ NL S S S ++ST S +Q+ L E + + + + Q +
Sbjct: 518 QEQNL-SQSMSAPAKPENSTLSGCSSGRVQHGLEQSMEQASQVTTSTVCNEEKVNQLLQK 576
Query: 548 QSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPT 607
S + Q D H + P S D G TD S V + P
Sbjct: 577 PGASSPVQADQCLDITHQIYQPQS----DPINGFSFLETDELTSQVSSFQSLAGSYKQPF 632
Query: 608 TVSSFTTS--VDPGVSSMPL 625
+SS +S V P ++ PL
Sbjct: 633 ILSSQDSSAVVLPDSTNSPL 652
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 797 (285.6 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 166/355 (46%), Positives = 228/355 (64%)
Query: 52 QADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSV 111
+A+ +TDEVYAQ+TL P + +++ L P + + FCKTLTASDTSTHGGFSV
Sbjct: 122 KAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSV 181
Query: 112 PRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKR 171
RR A++ P LD S QPP QEL+A+DLH EW+FRHIFRGQP+RHLL +GWSVFVS+KR
Sbjct: 182 LRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKR 241
Query: 172 LVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFT 231
LVAGD+ +F+ E +L +G+RRA+R +PSSV+SS SMH+G+L T + FT
Sbjct: 242 LVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFT 301
Query: 232 VFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDP 291
V++ PR SPSEF++P +Y+++V S+GMRF+M FE EE+ +R+ GTI GI + DP
Sbjct: 302 VYYKPRTSPSEFIVPFDQYMESV-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDP 360
Query: 292 VRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSF 351
RW S WRS+KV WDE+++ R RVS W++EP P P+L P+ + RP P ++
Sbjct: 361 TRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALA-P--PALSPVPMPRPKRPRSNIA 417
Query: 352 NDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQ 406
+ D +S L R GT + + L L + Q E S L H + +
Sbjct: 418 PSSPD--SSMLT--REGTTKANMDPLPASGLSR---VLQGQEYSTLRTKHTESVE 465
Score = 199 (75.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 39/91 (42%), Positives = 61/91 (67%)
Query: 657 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 715
+R+ KV+K G ++GRS+D+S+F +Y EL EL ++F G+ P + W +V+ D EN
Sbjct: 732 SRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEEN 790
Query: 716 DVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 746
D++L+GDDPW+ F V I I + E+V+KM
Sbjct: 791 DMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821
Score = 139 (54.0 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 28/51 (54%), Positives = 33/51 (64%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQ-MTLQPL 69
L ELWHACAGPLV++P RV YFPQGH EQ + T++ Q M L L
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDL 108
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 760 (272.6 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 158/302 (52%), Positives = 198/302 (65%)
Query: 53 ADVETDEVYAQMTLQPLSP--------EEQKDTFVPIEL-GIPS-KQPTNYFCKTLTASD 102
A+ +TDEVY Q+TL PL +E K+ E G S K+ + FCKTLTASD
Sbjct: 126 ANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASD 185
Query: 103 TSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG 162
TSTHGGFSVPRRAAE F LD+ Q P+QELIA+DLH VEWKFRHI+RGQP+RHLLTTG
Sbjct: 186 TSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTG 245
Query: 163 WSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXX 222
WS+FVS K LV+GD+VLF+ +E +L LGIRRA RP +P S++ +S +L
Sbjct: 246 WSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVAN 304
Query: 223 XXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGT 282
T S F VF++PRA+ +EFVIP KY+ ++ + V +G RFRM FE ++S RR G
Sbjct: 305 AVSTKSMFHVFYSPRATHAEFVIPYEKYITSI-RSPVCIGTRFRMRFEMDDSPERRCAGV 363
Query: 283 ITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKR 342
+TG+ DLDP RW NS WR + V WDES + Q RVS WEI+P + P R KR
Sbjct: 364 VTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKR 423
Query: 343 PW 344
PW
Sbjct: 424 PW 425
Score = 229 (85.7 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 63/222 (28%), Positives = 108/222 (48%)
Query: 533 FSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLP--SSYNGKDAAVGTENCNTD-SQ 589
F+G P+ F Q+ S Y P + + S +P + YN + + G + + +
Sbjct: 541 FAGFSPAAAPNPFAYQANKSSYYPLALHG-IRSTHVPYQNPYNAGNQSSGPPSRAINFGE 599
Query: 590 NSVVFGVHIDSSGLLLPTTVSS-FTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSEL-LHN 647
+ F + GL P V++ +D + G N+ GC L +
Sbjct: 600 ETRKFDAQ-NEGGL--PNNVTADLPFKID--MMGKQKGSELNMNASSGCKLFGFSLPVET 654
Query: 648 VGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 706
Q + R KV+K GS VGR++D+SR + Y++L EL ++F +EG DP GW
Sbjct: 655 PASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGW 713
Query: 707 QLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGE 748
++++ D END++++GDDPW F + VW I + + E+V+ +
Sbjct: 714 RILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENAND 755
Score = 136 (52.9 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 29/55 (52%), Positives = 31/55 (56%)
Query: 4 STSGLCQQGHE------GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQ 52
S+S C G G + SELWHACAGPL LP G VVYFPQGH EQ
Sbjct: 40 SSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ 94
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 766 (274.7 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 157/302 (51%), Positives = 202/302 (66%)
Query: 52 QADVETDEVYAQMTLQP-LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFS 110
+A+ ETDEVYAQ+TL P L E P++ P K + FCKTLTASDTSTHGGFS
Sbjct: 83 RAEPETDEVYAQITLLPELDQSEPTSPDAPVQE--PEKCTVHSFCKTLTASDTSTHGGFS 140
Query: 111 VPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 170
V RR A+ P LD S QPP QEL+A DLH+ EW FRHIFRGQP+RHLLTTGWSVFVS+K
Sbjct: 141 VLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSK 200
Query: 171 RLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCF 230
+LVAGD+ +F+ E +L +G+RR +R T +PSSV+SS SMHIG+L T + F
Sbjct: 201 KLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIF 260
Query: 231 TVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD 290
+VF+ PR S SEF++ + +Y++A ++SVGMRF+M FE EE+ +R+ GTI G+ +
Sbjct: 261 SVFYKPRTSRSEFIVSVNRYLEAKTQ-KLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENK 319
Query: 291 PVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT--TFPMYPSLFPLRLKRPWHPST 348
W +S WRS+KV WDE ++ R RVS WE+EPL + P P R KRP P
Sbjct: 320 SSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRPPGL 379
Query: 349 SS 350
S
Sbjct: 380 PS 381
Score = 190 (71.9 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 61/191 (31%), Positives = 97/191 (50%)
Query: 582 ENCNTD---SQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLG-DSGFHNSMYGC 637
EN N D S SV V +D P + F D G S PL + S G
Sbjct: 474 ENVNVDECFSAASVSGAVAVDQ-----PVPSNEF----DSGQQSEPLNINQSDIPSGSGD 524
Query: 638 MQDSSELLHNVGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEG 696
+ SS L + Q Q R+ KV+ GS VGR++D++R Y +L ++L +MF I+G
Sbjct: 525 PEKSS--LRSP-QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKG 581
Query: 697 KFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSP 756
+ + + WQ+V+ D E+D++++GDDPW F V I I +PE+V+K+ + + +
Sbjct: 582 ELLESTKK-WQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNA 640
Query: 757 SSGQRANSRGN 767
+A++ N
Sbjct: 641 RMQLKADAEEN 651
Score = 134 (52.2 bits), Expect = 9.2e-107, Sum P(3) = 9.2e-107
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 23 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQAD 54
ELWHACAGPLV+LP G RV YFP+GH EQ +
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLE 53
Score = 37 (18.1 bits), Expect = 1.1e-90, Sum P(3) = 1.1e-90
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 554 YEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFG 595
Y P +V+ L + + A EN NT+ ++S + G
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAEENGNTEGRSSSMAG 663
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 728 (261.3 bits), Expect = 2.7e-99, Sum P(3) = 2.7e-99
Identities = 152/304 (50%), Positives = 199/304 (65%)
Query: 52 QADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSV 111
+A+ ETDEVYAQ+TLQP + + + P +G P+KQ + F K LTASDTSTHGGFSV
Sbjct: 87 KAEHETDEVYAQITLQPEEDQSEPTSLDPPIVG-PTKQEFHSFVKILTASDTSTHGGFSV 145
Query: 112 PRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKR 171
R+ A + PSLD + P QEL+ RDLH EW+F+HIFRGQP+RHLLTTGWS FVS+KR
Sbjct: 146 LRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKR 205
Query: 172 LVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFT 231
LVAGD+ +F+ E L +G+RR R + MP+SV+SS SMH+G+L T + F
Sbjct: 206 LVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFV 265
Query: 232 VFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDP 291
VF+ PR S +F++ + KY++A+ H S+G RFRM FE EES R + GTI G DL
Sbjct: 266 VFYKPRIS--QFIVGVNKYMEAIKHG-FSLGTRFRMRFEGEESPERIFTGTIVGSGDLSS 322
Query: 292 VRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP-LTTFPMY-PSLFP---LRLKRPWHP 346
+W S WRS++V WDE T +R +VS WEIEP L T P+ P+ P + RP P
Sbjct: 323 -QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPAQQPQSKCKRSRPIEP 381
Query: 347 STSS 350
S +
Sbjct: 382 SVKT 385
Score = 171 (65.3 bits), Expect = 2.7e-99, Sum P(3) = 2.7e-99
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 657 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 715
+R+ KV G +VGR++D++ SY+EL +EL +MF I+G+ R W +VF D E
Sbjct: 488 SRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL--ARDKWIVVFTDDEG 545
Query: 716 DVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 746
D++L GDDPW F I I S ++V+KM
Sbjct: 546 DMMLAGDDPWNEFCKMAKKIFIYSSDEVKKM 576
Score = 120 (47.3 bits), Expect = 2.7e-99, Sum P(3) = 2.7e-99
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDE 59
L +ELW CAGPLV +P RV YFPQGH EQ T++
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQ 61
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 692 (248.7 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 139/283 (49%), Positives = 188/283 (66%)
Query: 52 QADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSV 111
+A+ ETDEVYAQ+TLQP + + + P L P+K + F K LTASDTSTHGGFSV
Sbjct: 104 KAEHETDEVYAQITLQPEEDQSEPTSLDP-PLVEPAKPTVDSFVKILTASDTSTHGGFSV 162
Query: 112 PRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKR 171
R+ A + PSLD + P QEL+ARDLH EW+F+HIFRGQP+RHLLTTGWS FV++KR
Sbjct: 163 LRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKR 222
Query: 172 LVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFT 231
LVAGD+ +F+ E L +G+RR + + MP+SV+SS SM +G+L T + F
Sbjct: 223 LVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFV 282
Query: 232 VFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDP 291
VF+ PR S +F+I + KY+ A+ S+GMR+RM FE EES R + GTI G DL
Sbjct: 283 VFYKPRIS--QFIISVNKYMMAM-KNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS 339
Query: 292 VRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPS 334
+W S WRS+++ WDE ++ +R +VS WEIEP + + P+
Sbjct: 340 -QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPT 381
Score = 187 (70.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 45/121 (37%), Positives = 69/121 (57%)
Query: 627 DSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELR 685
DS +S C +S ++ + Q T TR+ +KV G+ VGR++D++ SY+EL
Sbjct: 482 DSNISDSTTKCQDPNSS--NSPKEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELI 539
Query: 686 EELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQK 745
+EL +MF IEG+ P + W +VF D E D +L+GDDPW F + I ++V+K
Sbjct: 540 KELEKMFEIEGELS-P-KDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKK 597
Query: 746 M 746
M
Sbjct: 598 M 598
Score = 131 (51.2 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 24/40 (60%), Positives = 28/40 (70%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDE 59
L +ELW ACAGPLV +P G RV YFPQGH EQ T++
Sbjct: 39 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 78
Score = 41 (19.5 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 476 ALQIRTDELLQRQQSNLPSP----SFSKANFMDSSTEI---SVSISPMQNMLGSLPEGSG 528
+LQI+ DE Q+ N SP FS + + T+ S P+ + GS P S
Sbjct: 348 SLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGS-PVASS 406
Query: 529 NLLNFS 534
L +FS
Sbjct: 407 FLSSFS 412
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 713 (256.0 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 161/357 (45%), Positives = 213/357 (59%)
Query: 11 QGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS 70
QGH + ++ PL LP +++ S QA+ +TDEVYAQ+TL P+
Sbjct: 36 QGHMEQLEASTQQVDLNTMKPLFVLPP---KILCNVMNVSLQAEKDTDEVYAQITLIPVG 92
Query: 71 PEEQKDTFV---PIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSL 127
E + P EL P + F K LTASDTSTHGGFSV R+ A + P LD +
Sbjct: 93 TEVDEPMSPDPSPPELQRPK---VHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQ 149
Query: 128 QPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQ 187
Q P QEL+A D+H +WKF+HIFRGQP+RHLLTTGWS FV++KRLVAGD+ +F+ E +
Sbjct: 150 QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGE 209
Query: 188 LLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPL 247
L +G+RRA + MPSSV+SS SMH+G+L T + F V++ PR S +F+I L
Sbjct: 210 LRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTS--QFIISL 267
Query: 248 TKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWD 307
KY++A+ + + SVGMRF+M FE E+S RRY GT+ G+ D P W +S WR ++V WD
Sbjct: 268 NKYLEAMSN-KFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWD 325
Query: 308 ESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNW 364
E + R +VS WEIEP P L+ KRP S S D TAS L W
Sbjct: 326 EPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKRPRQVSEVSALDV-GITASNL-W 380
Score = 198 (74.8 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 62/212 (29%), Positives = 105/212 (49%)
Query: 546 PQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQ-------NSVVFGVHI 598
PQQ E ++ D++++ S S KD+ + + + Q N +FG+ +
Sbjct: 402 PQQCHRDANEDAKKSDWLNN-SYSVSNVAKDSTLNDQMVSPVEQKKPETTANYRLFGIDL 460
Query: 599 DSSGLLLPTTVSSFTTSVD---PGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLT 655
SS L +P ++ ++ P + S S Q+ +E Q Q +
Sbjct: 461 MSSSLAVPEEKTAPMRPINISKPTMDSHSDPKSEISKVSEEKKQEPAEGSPKEVQSKQSS 520
Query: 656 PTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRE 714
TR+ KV G VGR++D++ YNEL +++ ++F I+G+ R+ W++VF D E
Sbjct: 521 STRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDE 578
Query: 715 NDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 746
D++L+GDDPW F + V I I S E+V+KM
Sbjct: 579 GDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM 610
Score = 132 (51.5 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 20 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPL 69
L ELW CAGPLV +P RV YFPQGH EQ + T +V T++PL
Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLN-TMKPL 57
Score = 39 (18.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 552 SKYEPSQVRDFVHSMSLPSS 571
+K P ++ FV+S ++P S
Sbjct: 334 NKVSPWEIEPFVNSENVPKS 353
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 683 (245.5 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 140/282 (49%), Positives = 189/282 (67%)
Query: 53 ADVETDEVYAQMTLQPLSPE-EQK--DTFVPIELG-----IPSKQPTNY-FCKTLTASDT 103
A+ TDEVYAQ++L P S + E+K + + ++ G + + T + FCKTLTASDT
Sbjct: 109 AETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDT 168
Query: 104 STHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGW 163
STHGGFSVPRRAAE FP LD+S P+QEL+ARDLH +EW+FRHI+RGQP+RHLLTTGW
Sbjct: 169 STHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGW 228
Query: 164 SVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXX 223
S FV+ K+LV+GD+VLF+ + +L LG+RRA + S + +M+
Sbjct: 229 SAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHA 288
Query: 224 XXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTI 283
T+S F++ +NP+AS S F+IP K++K V + +GMRF+ E+E++S RR G I
Sbjct: 289 ISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYP-FCIGMRFKARVESEDASERRSPGII 347
Query: 284 TGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP 325
+GISDLDP+RW S WR + V WD+ A Q RVS WEIEP
Sbjct: 348 SGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEP 389
Score = 143 (55.4 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 15 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVY 61
G CL ELWHACAGPL+SLP G+ V+YFPQGH EQA + +Y
Sbjct: 48 GGGVCL--ELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFSAAIY 92
Score = 41 (19.5 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 588 SQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYG 636
SQ ++ G + S +LP +VSS +SV S+ P G H+ G
Sbjct: 500 SQRNIWCGPFQNFSTRILPPSVSSSPSSVLLTNSNSPNGRLEDHHGGSG 548
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 582 (209.9 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 127/313 (40%), Positives = 184/313 (58%)
Query: 31 PLVSLPT-VGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQ 89
P+ LP+ + RV+ H + + +DE+YA++TL P + +P + +
Sbjct: 70 PICDLPSKLQCRVIAI---HLK-VENNSDEIYAEITLMP----DTTQVVIPTQSENRFRP 121
Query: 90 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHI 149
N F K LTASDTS +GGFSVP++ A + P LD S PAQE++A DLHD +W+FRH
Sbjct: 122 LVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHN 181
Query: 150 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSS 209
+RG P+RH LTTGW+ F+++K+LV GD ++F+ E +L +GIRRA +PSS++S
Sbjct: 182 YRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSI 241
Query: 210 DSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLF 269
D M G++ F V + PR+S +F++ K++ AV + + +VG RF M F
Sbjct: 242 DCMRHGVIASAKHAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAV-NNKFNVGSRFTMRF 298
Query: 270 ETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 329
E ++ S RRY GTI G+SD P W S WRS++V WDE + R +VS WEIE L
Sbjct: 299 EGDDFSERRYFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLVPA 357
Query: 330 PMYPSLFPLRLKR 342
P L+ KR
Sbjct: 358 LNVPRSSLLKNKR 370
Score = 169 (64.5 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 65/259 (25%), Positives = 117/259 (45%)
Query: 491 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 550
N+P S K + E S S + + L +G + S A P + ++ + +
Sbjct: 359 NVPRSSLLKNKRLREVNEFGSSSSHLLPPI--LTQGQ-EIGQLSVASPMNISLRY-RDTT 414
Query: 551 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 608
+ PS++ +P +YN + EN T + N +FGV +D+ P
Sbjct: 415 EAAMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKAGTNFRLFGVTLDT-----PPM 469
Query: 609 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 667
+ + +S + F S ++ E+ Q Q + +RT KV G
Sbjct: 470 IKDPIKQIGSDISKLTERKK-FGQSQ--TLRSPIEI-----QSKQFSSSRTCTKVQMQGV 521
Query: 668 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEA 727
++GR++D+S + Y++L EL ++F I+G+ + R+ W++ F D + +L+GDDPW
Sbjct: 522 TIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWKIAFTDSDGYEMLVGDDPWPE 579
Query: 728 FVSNVWYIKILSPEDVQKM 746
F V I I S E+V+ +
Sbjct: 580 FCKMVKKILIYSKEEVKNL 598
Score = 117 (46.2 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G V YFPQG+ E T E + LQP+ P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNE--LQPICDLP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I L + + Y TL T
Sbjct: 76 SKLQCRVIAIHLKVENNSDEIYAEITLMPDTT 107
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 575 (207.5 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 128/313 (40%), Positives = 182/313 (58%)
Query: 31 PLVSLPT-VGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQ 89
P+ LP+ + RV+ H + + +DE YA++TL P + +P + +
Sbjct: 70 PICDLPSKLQCRVIAI---HLK-VENNSDETYAEITLMP----DTTQVVIPTQNENQFRP 121
Query: 90 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHI 149
N F K LTASDTS HGGF VP++ A + PSLD S PAQEL+A DLH +W+F H
Sbjct: 122 LVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHN 181
Query: 150 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSS 209
+RG P+RHLLTTGW+ F ++K+LVAGD ++F+ E +L +GIRRA +PSS++S
Sbjct: 182 YRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSI 241
Query: 210 DSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLF 269
D M G++ FTV + PR+S +F++ K++ AV + + +VG RF M
Sbjct: 242 DCMRHGVVASAKHAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAV-NNKFNVGSRFTMRL 298
Query: 270 ETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 329
E ++ S RR GTI G+SD P W S WRS++V WDE T+ +VS W+IE L
Sbjct: 299 EGDDFSERRCFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHLMPA 357
Query: 330 PMYPSLFPLRLKR 342
P F L+ KR
Sbjct: 358 INVPRSFLLKNKR 370
Score = 171 (65.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 63/245 (25%), Positives = 112/245 (45%)
Query: 491 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 550
N+P K + EI S S + + L +G N S A P + ++ + +
Sbjct: 359 NVPRSFLLKNKRLREVNEIGSSSSHLLPPI--LTQGQENE-QLSVASPMNISLRY-RDAT 414
Query: 551 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 608
PS++ +P +YN + EN T + N +FGV +D+ P
Sbjct: 415 EDAMNPSKLLMSYPVQPMPKLNYNNQMVTEMEENITTKTGTNFRLFGVTLDT-----PPV 469
Query: 609 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 667
+ + +S + G F S ++ +E+ Q Q + +RT KV G
Sbjct: 470 IKDPIEEIGSEISKLTEGKK-FGLSQ--TLRSPTEI-----QNKQFSSSRTCTKVQMQGV 521
Query: 668 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEA 727
++GR++D+S + Y++L EL ++F I+G+ + R+ W++ F D + D +L+GDDPW
Sbjct: 522 TIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWEIAFTDSDEDKMLVGDDPWPE 579
Query: 728 FVSNV 732
F + V
Sbjct: 580 FCNMV 584
Score = 130 (50.8 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G +V YFPQGH E + T E + LQP+ P
Sbjct: 18 DGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNE--LQPICDLP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I L + + Y TL T
Sbjct: 76 SKLQCRVIAIHLKVENNSDETYAEITLMPDTT 107
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 554 (200.1 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 125/296 (42%), Positives = 174/296 (58%)
Query: 52 QADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGF 109
Q VE +DE YA++TL P + +P + + N F K LTASDTS GGF
Sbjct: 86 QLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTKVLTASDTS--GGF 139
Query: 110 SVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSA 169
VP++ A + P LD S P QEL+A DLH +W+F H +RG P+RHLLTTGW+ F ++
Sbjct: 140 FVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTS 199
Query: 170 KRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSC 229
K+LVAGD ++F+ E +L +GIRRA +PSS++S +SM G++
Sbjct: 200 KKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCM 259
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 289
F V + PR+S +F++ K++ AV + + +VG RF M FE ++ S RRY GTI G+SD
Sbjct: 260 FIVVYKPRSS--QFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDF 316
Query: 290 DPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIE---PLTTFPMYPSLFPLRLKR 342
P W S WR+++V WDE + R +VS WEIE P P PSL L+ KR
Sbjct: 317 SP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHLMPALNVPR-PSL--LKNKR 368
Score = 178 (67.7 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 65/250 (26%), Positives = 115/250 (46%)
Query: 491 NLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSL 550
N+P PS K + EI S S + + L +G + S A P + + + +
Sbjct: 357 NVPRPSLLKNKRLREVNEIGSSSSHLLPPI--LTQGQ-EIGQLSVASPMNISLTY-RDTT 412
Query: 551 GSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVVFGVHIDSSGLLLPTT 608
PS++ +P +YN + EN T + N +FGV L+ P+
Sbjct: 413 EDVMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKTGTNFRLFGV-----SLVTPSV 467
Query: 609 VSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSG- 667
+ + +S + G F S ++ +E+ Q Q + TRT KV G
Sbjct: 468 IKDPIEEIGSEISKLTEGKK-FGQSQ--TLRSPTEI-----QSKQFSSTRTCTKVQMQGV 519
Query: 668 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEA 727
++ R++D+S + Y++L EL ++F ++G+ + R+ W++ F D ++D +L+GDDPW
Sbjct: 520 TIERAVDLSVLNGYDQLILELEELFDLKGQLQT--RNQWEIAFTDSDDDKMLVGDDPWPE 577
Query: 728 FVSNVWYIKI 737
F + V I I
Sbjct: 578 FCNMVKKILI 587
Score = 121 (47.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G ++ YFPQG+ E + T E + L+P+ P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNE--LKPICDLP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I+L + + Y TL T
Sbjct: 76 SKLQCRVIAIQLKVENNSDETYAEITLMPDTT 107
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 555 (200.4 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 117/278 (42%), Positives = 166/278 (59%)
Query: 52 QADVE--TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGF 109
Q VE +DE YA++TL P + +P + + N F K LTASDTS HGGF
Sbjct: 86 QLKVENNSDETYAEITLMP----DTTQVVIPTQNQNQFRPLVNSFTKVLTASDTSVHGGF 141
Query: 110 SVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSA 169
SVP++ A + P LD S P QE++A DLH +W+FRHI+RG +RHLLT GW+ F ++
Sbjct: 142 SVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTS 201
Query: 170 KRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSC 229
K+LV GD ++F+ E +L +GIRRA +PSS++S +SM G++
Sbjct: 202 KKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCM 261
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 289
F V + PR+S +F++ K++ V + + +VG RF M FE ++ S RR GTI G+SD
Sbjct: 262 FIVVYKPRSS--QFIVSYDKFLDVV-NNKFNVGSRFTMRFEGDDFSERRSFGTIIGVSDF 318
Query: 290 DPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 327
P W S WRS++V WDE + R +VS W+IE LT
Sbjct: 319 SP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLT 355
Score = 175 (66.7 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 60/220 (27%), Positives = 111/220 (50%)
Query: 538 PSMLR-QQFPQQSLGSKYEPS-QVRDFVHSMSLPS----SYNGKDAA-VGTENCNTDSQN 590
P++ + Q+ QQS+ + S + RD PS SY + A + N T +
Sbjct: 387 PTLTQGQEIGQQSMATPMNISLRYRDITEDAMTPSRLLMSYPVQPMAKLNYNNVVTPIEE 446
Query: 591 SVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGF-HNSMYGCMQDSSELLHNVG 649
++ + +S L ++++ + DP V + L S +G S++L +
Sbjct: 447 NIT--TNAVASFRLFGVSLATPSVIKDP-VEQIGLEISRLTQEKKFG----QSQILRSPT 499
Query: 650 QID--QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGW 706
+I Q + TRT KV G ++GR++D+S + Y++L EL ++F ++G+ + R+ W
Sbjct: 500 EIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQ--ARNQW 557
Query: 707 QLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 746
++ F + E D +L+G+DPW F + V I I S E+V+ +
Sbjct: 558 EIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNL 597
Score = 133 (51.9 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G +V YFPQGH E + T E + LQP+ P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNE--LQPICDFP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I+L + + Y TL T
Sbjct: 76 SKLQCRVIAIQLKVENNSDETYAEITLMPDTT 107
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 545 (196.9 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 121/313 (38%), Positives = 177/313 (56%)
Query: 31 PLVSLPT-VGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQ 89
P+ LP+ + RV+ H + + +DE YA++TL P + +P + +
Sbjct: 70 PICDLPSKLQCRVIAI---HLK-VENNSDETYAEITLMP----DTTQVVIPTQSENQFRP 121
Query: 90 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHI 149
N F K LTASDTS +GGF VP++ A + P L PAQEL+A+DLH +W+FRH
Sbjct: 122 LVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHS 177
Query: 150 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSS 209
+RG P+RH LTTGW+ F ++K+LV GD ++F+ E +L +GIRRA +PSS++S
Sbjct: 178 YRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSI 237
Query: 210 DSMHIGLLXXXXXXXXTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLF 269
D M G++ F V + P S+F++ K++ A+ + + VG RF M F
Sbjct: 238 DCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAM-NNKFIVGSRFTMRF 296
Query: 270 ETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTF 329
E ++ S RRY GTI G++D P W S WRS++V WDE + R +VS WEIE L +
Sbjct: 297 EGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSA 355
Query: 330 PMYPSLFPLRLKR 342
P L+ KR
Sbjct: 356 LNVPRSSLLKNKR 368
Score = 176 (67.0 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 68/274 (24%), Positives = 121/274 (44%)
Query: 476 ALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSG 535
+L+++ DE + N SP + + M S+ + S L + E + S
Sbjct: 327 SLEVQWDEFASFSRPNKVSP-WEIEHLM-SALNVPRSSLLKNKRLREVNEFGQEIGQLSV 384
Query: 536 AGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPS-SYNGKDAAVGTENCNTDS-QNSVV 593
A P ++ + + PS++ +P +YN + EN T + N +
Sbjct: 385 ASPMNTSLRY-RDTTEDAMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRL 443
Query: 594 FGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQ 653
FGV L +P + + +S + G F S ++ E+ Q Q
Sbjct: 444 FGV-----SLAIPLVIKDPIEEIGSDISKLTEGKK-FGQSQ--TLRSPIEI-----QSKQ 490
Query: 654 LTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD 712
TRT KV G ++GR++D+S + Y++L EL ++F ++G+ + R+ W++ F D
Sbjct: 491 FGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKIAFTD 548
Query: 713 RENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 746
+ +L+GDDPW F V I I S E+V+ +
Sbjct: 549 SDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNL 582
Score = 126 (49.4 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G V YFPQG+ E D T E + LQP+ P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNE--LQPICDLP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I L + + Y TL T
Sbjct: 76 SKLQCRVIAIHLKVENNSDETYAEITLMPDTT 107
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 379 (138.5 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 78/149 (52%), Positives = 102/149 (68%)
Query: 53 ADVETDEVYAQMTLQPLSPEEQKD-TFVPIE--LGIPSK-QPTNYFCKTLTASDTSTHGG 108
AD E+DEV+A++ L PL +E D + E G S + T F KTLT SD + GG
Sbjct: 75 ADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGG 134
Query: 109 FSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVS 168
FSVPR AE +FP LD++ +PP Q ++A+D+H WKFRHI+RG P+RHLLTTGWS FV+
Sbjct: 135 FSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVN 194
Query: 169 AKRLVAGDSVLFIWNEKNQLLLGIRRAIR 197
K+LVAGDS++F+ E L +GIRRA R
Sbjct: 195 QKKLVAGDSIVFMRAENGDLCVGIRRAKR 223
Score = 207 (77.9 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 48/122 (39%), Positives = 67/122 (54%)
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGISD 288
F V + PRAS SEF + +A GMRF+M FETE+SS + +MGT++ ++
Sbjct: 289 FEVVYYPRASTSEFCVKALD-ARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNV 347
Query: 289 LDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP--SLFPLRLKR--PW 344
DP+RW NS WR ++V WDE + RV+ W +E ++ P S P R K P
Sbjct: 348 SDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQ 407
Query: 345 HP 346
HP
Sbjct: 408 HP 409
Score = 126 (49.4 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 15 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQA 53
G K L+ +LWHACAG +V +P + ++V YFPQGH+E A
Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENA 49
Score = 109 (43.4 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 69/264 (26%), Positives = 114/264 (43%)
Query: 490 SNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQS 549
+++P PSF +N + S+ +S S + N+ L N + G S L + +
Sbjct: 416 NSIPVPSFP-SNPLIRSSPLS---SVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNRP 471
Query: 550 LGSKYEPSQVRDFVHSMSLPS--SYNGKD---AAVGTENCN-TDSQNSVVFGVHIDSSG- 602
PS ++ S+ L + + N K +GT CN T S+ S HI G
Sbjct: 472 PPPP-PPSSLQ-LSPSLGLRNIDTKNEKGFCFLTMGTTPCNDTKSKKS-----HIVLFGK 524
Query: 603 LLLPTTVSSFTTSVDPG-VSSMPLGDSGFH-NSMYGCMQDSSELLHNVGQ-IDQLTPTRT 659
L+LP S S D + + G + N + G SS+ + + + T
Sbjct: 525 LILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDASGLET 584
Query: 660 -FVKVY-KSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDV 717
KV+ +S VGR+LD+S SY EL +L MFGI K + L S +++ D +
Sbjct: 585 GHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGI--KKSEMLSS---VLYRDASGAI 639
Query: 718 LLLGDDPWEAFVSNVWYIKILSPE 741
G++P+ F+ + IL+ +
Sbjct: 640 KYAGNEPFSEFLKTARRLTILTEQ 663
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 399 (145.5 bits), Expect = 5.4e-58, Sum P(3) = 5.4e-58
Identities = 88/181 (48%), Positives = 112/181 (61%)
Query: 26 HACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI 85
HA A P P V ++ AD ETDEV+A++TL PL P D LG+
Sbjct: 39 HAHAPPDFHAPRVPPLILCRVVSVKFLADAETDEVFAKITLLPL-PGNDLDLENDAVLGL 97
Query: 86 --PS-------KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIA 136
PS K+ F KTLT SD + GGFSVPR AE +FP LD+S +PP Q +IA
Sbjct: 98 TPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIA 157
Query: 137 RDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAI 196
+D+H WKFRHI+RG P+RHLLTTGWS FV+ K+L+AGDS++F+ +E L +GIRRA
Sbjct: 158 KDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAK 217
Query: 197 R 197
R
Sbjct: 218 R 218
Score = 211 (79.3 bits), Expect = 5.4e-58, Sum P(3) = 5.4e-58
Identities = 46/114 (40%), Positives = 66/114 (57%)
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGISD 288
F V + PRAS EF + V++ R GMRF+M FETE+SS + +MGT++ +
Sbjct: 287 FEVVYYPRASTPEFCVKAAD-VRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQV 345
Query: 289 LDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSLFPLRLK 341
DP+RW NS WR ++V WDE + RVS W +E ++ P ++ S F R K
Sbjct: 346 ADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPRKK 399
Score = 119 (46.9 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 18 KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETD 58
K L+ +LWHACAG +V +P++ + V YF QGH+E A D
Sbjct: 5 KSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPD 45
Score = 98 (39.6 bits), Expect = 5.4e-58, Sum P(3) = 5.4e-58
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 662 KVY-KSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 720
KV+ +S VGR+LD+S SY EL +L +MF IE + D L +V+ D + +
Sbjct: 584 KVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEER-SDLLT---HVVYRDANGVIKRI 639
Query: 721 GDDPWEAFVSNVWYIKI---LSPEDVQKMGEQGVES 753
GD+P+ F+ + I + ++V+K G+ +
Sbjct: 640 GDEPFSDFMKATKRLTIKMDIGGDNVRKTWITGIRT 675
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 175 GDSVLFIWNEKNQLLLGIRRAIRPPTVM--PSSVLSSDSMHIGLLXXXXXXXXTNSCFTV 232
G+S+ ++ N+ N GI+ A + + PS L SD +++ + F
Sbjct: 428 GESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSD-LNLSSYTGNNKLHSP-AMFLS 485
Query: 233 FFNPR 237
FNPR
Sbjct: 486 SFNPR 490
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 359 (131.4 bits), Expect = 7.4e-54, Sum P(3) = 7.4e-54
Identities = 88/232 (37%), Positives = 124/232 (53%)
Query: 11 QGH-EGDNKCLNSELWHACAGPLVSLPT-VGTRVVYFPQGHSEQADVETDEVYAQMTLQP 68
QGH E EL H P+ LP+ + RVV + + D TDEVYAQ++L P
Sbjct: 49 QGHIELIENSTRDELDHI--RPIFDLPSKLRCRVVAIDR----KVDKNTDEVYAQISLMP 102
Query: 69 LSPEEQKDTFVPIELGIPSKQPTNYF-CKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSL 127
+ E + +++P YF K LTASD S GG +P++ A + FP LD S
Sbjct: 103 DTTEVMTHNTT-----MDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQ 157
Query: 128 QPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG--WSVFVSAKRLVAGDSVLFIWNEK 185
Q L+A+DL+ EW F+H+FRG P+RH+ T+G WSVF + KRL+ GD + + E
Sbjct: 158 PISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGEN 217
Query: 186 NQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSCFTVFFNPR 237
+L GIRRA +PSSV+S++ M G++ T F V + PR
Sbjct: 218 GELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR 269
Score = 153 (58.9 bits), Expect = 7.4e-54, Sum P(3) = 7.4e-54
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 266 RMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEP 325
RM FE ++ S +RY GTI G++D+ P W +S WRS+KV WDE + R +VS W+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 326 LTTFPMYP-SLFPLRLKRPW 344
L P S L+ K+ W
Sbjct: 328 L--IPSSDISQSSLKKKKHW 345
Score = 148 (57.2 bits), Expect = 7.4e-54, Sum P(3) = 7.4e-54
Identities = 31/98 (31%), Positives = 58/98 (59%)
Query: 662 KVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 720
KV+ G ++ R++D++ YN+L ++L ++F ++ + R+ W++VF + E +L+
Sbjct: 437 KVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRT--RNQWEIVFTNNEGAEMLV 494
Query: 721 GDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSS 758
GDDPW F + I I S E+++KM + + F P S
Sbjct: 495 GDDPWPEFCNMAKRIFICSKEEIKKMKLKN-KFFQPES 531
Score = 107 (42.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 23 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVET-DEV 60
+LW+ CAGPL LP G +V YFPQGH E + T DE+
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDEL 63
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 362 (132.5 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 75/174 (43%), Positives = 105/174 (60%)
Query: 26 HACAGPLVS-LPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLSPEEQKDT----FVP 80
H C PL+S LP+ + V AD TDEV+A + LQP++ ++ T F
Sbjct: 48 HCC--PLLSTLPSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGR 105
Query: 81 IELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLH 140
+ + F K LT SD + GGFSVPR A+ VFP L+F + PP Q+L D+H
Sbjct: 106 FDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIH 165
Query: 141 DVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRR 194
W FRHI+RG P+RHLLTTGWS FV++K+L+AGDSV+F+ +++ +G+RR
Sbjct: 166 GAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 126 (49.4 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESS-VRRYMGTITGI-S 287
F V F P A SEFV+ + V++ + G R +M ETE+SS + + G ++
Sbjct: 284 FEVVFYPAAGWSEFVVR-AEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQ 342
Query: 288 DLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFP--LRLKRP 343
+ P W S W+ +++ WDE + RV+ W++E + FP RLK P
Sbjct: 343 ETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAKRLKYP 398
Score = 96 (38.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 24 LWHACAGPLVSLPTVGTRVVYFPQGHSE 51
+W ACAG V +P + +RV YFPQGH E
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVE 47
Score = 52 (23.4 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 344 WHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMF---PWMQQRV---EPSFL 397
W P T E +S + W QG+ + +Q G + PW Q ++ EP L
Sbjct: 312 WTPGTRVKMAMETEDSSRITWF------QGIVSSTYQETGPWRGSPWKQLQITWDEPEIL 365
Query: 398 GNDHN-QQYQAMLAA 411
N +Q +AA
Sbjct: 366 QNVKRVNPWQVEIAA 380
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 262 (97.3 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 59/137 (43%), Positives = 80/137 (58%)
Query: 57 TDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAA 116
+DE Y ++TL P + +P E + N F K LTASDTS G FSVP + A
Sbjct: 93 SDETYVEITLMP----DTTQVVIPTENENQFRPIVNSFTKVLTASDTSAQGEFSVPCKHA 148
Query: 117 EKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGD 176
+ P LD S PAQELIA DLH +W+F+H +R P+ TTGW+ F ++K+LV GD
Sbjct: 149 IECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGD 205
Query: 177 SVLFIWNEKNQLLLGIR 193
++F E +L +GIR
Sbjct: 206 VIVFARGETGELRVGIR 222
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 14 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQADVETDEVYAQMTLQPLS--P 71
+G + +LW CAGPL +P +G +V YFPQGH E + T E + LQP P
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNE--LQPNCDLP 75
Query: 72 EEQKDTFVPIELGIPSKQPTNYFCKTLTASDT 103
+ + + I L + + Y TL T
Sbjct: 76 SKLQCRVIAIHLKVENNSDETYVEITLMPDTT 107
>TAIR|locus:2090527 [details] [associations]
symbol:IAA31 "indole-3-acetic acid inducible 31"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0009630 GO:GO:0022621 EMBL:AB022219 HOGENOM:HOG000005696
EMBL:AY054274 EMBL:BT000543 IPI:IPI00540266 RefSeq:NP_188387.1
UniGene:At.22356 IntAct:Q8H174 EnsemblPlants:AT3G17600.1
GeneID:821026 KEGG:ath:AT3G17600 GeneFarm:3238 TAIR:At3g17600
eggNOG:NOG267119 InParanoid:Q8H174 OMA:KITRPER PhylomeDB:Q8H174
ProtClustDB:CLSN2913488 Genevestigator:Q8H174 GermOnline:AT3G17600
Uniprot:Q8H174
Length = 158
Score = 144 (55.7 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 33/86 (38%), Positives = 45/86 (52%)
Query: 657 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDREN 715
T FVKVY G +GR LD+ FS Y L E L MF + R L + D++
Sbjct: 71 TSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDG 130
Query: 716 DVLLLGDDPWEAFVSNVWYIKILSPE 741
D +++GD PW+ F+ V +KI PE
Sbjct: 131 DWMMVGDIPWDMFLETVRRLKITRPE 156
>TAIR|locus:2180557 [details] [associations]
symbol:IAA28 "AT5G25890" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0010102 "lateral
root morphogenesis" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 EMBL:AF149413
GO:GO:0010102 EMBL:AC005405 HOGENOM:HOG000238261 KO:K14484
EMBL:AF149816 EMBL:BT000427 EMBL:BT002175 IPI:IPI00545995
PIR:T52143 RefSeq:NP_568478.1 UniGene:At.11439 IntAct:Q9XFM0
EnsemblPlants:AT5G25890.1 GeneID:832658 KEGG:ath:AT5G25890
GeneFarm:3188 TAIR:At5g25890 eggNOG:NOG283222 InParanoid:Q9XFM0
OMA:WEMFVST PhylomeDB:Q9XFM0 ProtClustDB:CLSN2917715
Genevestigator:Q9XFM0 GermOnline:AT5G25890 Uniprot:Q9XFM0
Length = 175
Score = 130 (50.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 718
+VK+ G +GR +++S +++Y +L + Q+F + ++ L + LV+ D E D +
Sbjct: 82 YVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWD--LNRQYTLVYEDTEGDKV 139
Query: 719 LLGDDPWEAFVSNVWYIKIL 738
L+GD PWE FVS V + +L
Sbjct: 140 LVGDVPWEMFVSTVKRLHVL 159
Score = 37 (18.1 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 338 LRLKRPWHPSTSSFNDNRDETAS 360
LRL P H TS+ N N + S
Sbjct: 9 LRLAPPCHQFTSNNNINGSKQKS 31
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 144 (55.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 41/131 (31%), Positives = 66/131 (50%)
Query: 74 QKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQE 133
Q+D PIE S + + F K +T SD +P++ AE+ FP LD S + +
Sbjct: 3 QEDKEKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTNDSNK 61
Query: 134 LIARDLHDVE---WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNE--KNQL 188
+ + D W+FR+ + + +++T GWS FV K+L AGD V F + K++L
Sbjct: 62 GLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKL 121
Query: 189 LLGIRRAIRPP 199
+ RR + P
Sbjct: 122 YIDWRRRPKIP 132
>TAIR|locus:2051154 [details] [associations]
symbol:IAA13 "auxin-induced protein 13" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] InterPro:IPR003311
InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0003700 GO:GO:0006351 EMBL:AC002332 HOGENOM:HOG000238261
UniGene:At.10797 ProtClustDB:CLSN2681806 EMBL:U18415 EMBL:AF332399
EMBL:BT005874 EMBL:AY085194 EMBL:Z26543 IPI:IPI00536192
IPI:IPI00548760 PIR:S58499 RefSeq:NP_001118434.1 RefSeq:NP_180889.1
RefSeq:NP_850205.1 UniGene:At.74387 IntAct:Q38831 STRING:Q38831
EnsemblPlants:AT2G33310.2 GeneID:817894 KEGG:ath:AT2G33310
GeneFarm:3160 TAIR:At2g33310 eggNOG:NOG308656 InParanoid:Q38831
OMA:LEDMFFR PhylomeDB:Q38831 Genevestigator:Q38831
GermOnline:AT2G33310 Uniprot:Q38831
Length = 247
Score = 136 (52.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 35/116 (30%), Positives = 60/116 (51%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMF--------GIEGKFEDPLR-----SG 705
F+KV G ++GR +D++ SSY L + L MF G+ +F PLR S
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 190
Query: 706 WQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQR 761
+ L + D+E D +L+GD PW F+++V ++++ + + + E P+ QR
Sbjct: 191 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE---PNERQR 243
Score = 45 (20.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 100 ASDTSTHGGFSVPRRAAEKV 119
A+D+++H G S PR +++ V
Sbjct: 59 AADSASHAGSSPPRSSSQVV 78
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 145 (56.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 58/237 (24%), Positives = 94/237 (39%)
Query: 50 SEQADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGF 109
S+Q E+ + + S + +P+ + IP + + F K +T SD
Sbjct: 13 SDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMM-IPPPEKEHMFDKVVTPSDVGKLNRL 71
Query: 110 SVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSA 169
+P++ AE+ FP LD S L +D + W+FR+ + + +++T GWS FV
Sbjct: 72 VIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKE 130
Query: 170 KRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXXXTNSC 229
K+L AGD V F +R I + S L D H + N
Sbjct: 131 KKLDAGDIVSF------------QRGIGDES--ERSKLYIDWRHRPDMSLVQAHQFGNFG 176
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRY-MGTITG 285
F F + S PL +Y H +++G R + T+ Y G + G
Sbjct: 177 FNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAG 233
Score = 40 (19.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 398 GNDHNQQYQAML 409
GND+NQQ ++ L
Sbjct: 294 GNDYNQQEESWL 305
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 137 (53.3 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 39/120 (32%), Positives = 58/120 (48%)
Query: 64 MTLQPLSPEEQKDTFVPI--ELGIPSKQPTNY-FCKTLTASDTSTHGGFSVPRRAAEKVF 120
MT L+ +E ++ P+ E G + F K +T SD +P++ AE+ F
Sbjct: 2 MTDLSLTRDEDEEEAKPLAEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFF 61
Query: 121 PSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 180
P LD S L DL W+FR+ + + +++T GWS FV K+L AGD V F
Sbjct: 62 P-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 120
>UNIPROTKB|Q5VRR0 [details] [associations]
symbol:IAA20 "Auxin-responsive protein IAA20" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
EMBL:AB023482 EMBL:AP002536 EMBL:AK102541 RefSeq:NP_001056915.2
UniGene:Os.15798 STRING:Q5VRR0 EnsemblPlants:LOC_Os06g07040.1
GeneID:4340245 KEGG:dosa:Os06t0166500-01 KEGG:osa:4340245
Gramene:Q5VRR0 eggNOG:NOG246219 OMA:KCARRRS ProtClustDB:CLSN2695987
Uniprot:Q5VRR0
Length = 183
Score = 122 (48.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMF---GIEGKFEDPLRSGWQLVFVDREN 715
+VKV G ++GR LD+S SY EL + L MF E + R + + + D E
Sbjct: 100 YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEG 159
Query: 716 DVLLLGDDPWEAFVSNVWYIKIL 738
D + +GD PWEAF +V +KIL
Sbjct: 160 DWMQVGDVPWEAFAKSVKRLKIL 182
Score = 39 (18.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 187 QLLLGIRRAIRPPTVMPSSVLSSDS 211
+L LG+R A+ P+ P++ ++ S
Sbjct: 2 ELELGLRLALPSPSPSPATATAAGS 26
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 130 (50.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFP-SL-DFSLQPPAQELIARDLHDVEWKFRHIFR 151
F KT+T SD +P+ AEK FP L + ++ L D++ W+FR+ +
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 152 GQPKRHLLTTGWSVFVSAKRLVAGDSVLF 180
+ ++LT GWS FV KRL AGD + F
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISF 271
>TAIR|locus:2197838 [details] [associations]
symbol:IAA12 "indole-3-acetic acid inducible 12"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009733 "response to auxin
stimulus" evidence=IGI] [GO:0009880 "embryonic pattern
specification" evidence=IMP] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010051 "xylem and phloem
pattern formation" evidence=IMP] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0048364 "root
development" evidence=IMP] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0010051 EMBL:AC002376 GO:GO:0009880 HOGENOM:HOG000238261
EMBL:U18414 EMBL:AF332398 EMBL:AY065240 EMBL:AY096535 EMBL:AY088042
IPI:IPI00527949 PIR:S58498 RefSeq:NP_171949.1 UniGene:At.10466
UniGene:At.10797 IntAct:Q38830 STRING:Q38830 PRIDE:Q38830
DNASU:839495 EnsemblPlants:AT1G04550.2 GeneID:839495
KEGG:ath:AT1G04550 GeneFarm:3159 TAIR:At1g04550 eggNOG:NOG330636
InParanoid:Q38830 KO:K14484 OMA:WKERGRI PhylomeDB:Q38830
ProtClustDB:CLSN2681806 Genevestigator:Q38830 Uniprot:Q38830
Length = 239
Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMF-GIEG----KFEDPLR-----SGWQL 708
FVKV G +GR +D+ SSY L + L +MF G+ G + PLR S + L
Sbjct: 126 FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVL 185
Query: 709 VFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE 752
+ D+E D +L+GD PW F+++V ++I+ + + + E
Sbjct: 186 TYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQE 229
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 129 (50.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 87 SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKF 146
S++ + F K LT SD +P++ AE FP D L +D + W+F
Sbjct: 29 SERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED---NQNGTVLDFQDKNGKMWRF 85
Query: 147 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 180
R+ + + +++T GWS FV K+L AGD+V F
Sbjct: 86 RYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSF 119
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQ 153
F K +T SD +P+ AEK FP ++ L D++ W+FR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 154 PKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLG 191
+ ++LT GWS FV K L AGD V F + + QL +G
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 33/105 (31%), Positives = 51/105 (48%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIA--RDLHDVEWKFRHIFR 151
F K LT SD +P++ AE+ FP + + L+ D W+FR+ +
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 152 GQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKN--QLLLGIRR 194
+ ++LT GWS +V K L AGD VLF + + + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>TAIR|locus:2170862 [details] [associations]
symbol:ATAUX2-11 "AT5G43700" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;ISS;RCA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007020
"microtubule nucleation" evidence=RCA] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA] [GO:0010583 "response to
cyclopentenone" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309
PROSITE:PS50962 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009536 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AB026651
HOGENOM:HOG000238261 ProtClustDB:CLSN2681778 UniGene:At.47260
EMBL:X53435 EMBL:L15450 EMBL:BT005853 IPI:IPI00523552 PIR:S12243
RefSeq:NP_199183.1 IntAct:P33077 STRING:P33077
EnsemblPlants:AT5G43700.1 GeneID:834390 KEGG:ath:AT5G43700
GeneFarm:3150 TAIR:At5g43700 eggNOG:NOG253406 InParanoid:P33077
OMA:KVYKSYP PhylomeDB:P33077 Genevestigator:P33077
GermOnline:AT5G43700 Uniprot:P33077
Length = 186
Score = 119 (46.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 660 FVKVYKSGSVG-RSLDISRFSSYNELREELGQMFGIE-GK-FEDPLRSGWQLV--FVDRE 714
+VKV G+ R +D++ + Y EL + L MF G+ FE G V + D++
Sbjct: 90 YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKD 149
Query: 715 NDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGV 751
D +L+GD PWE FVS+ ++I+ +V+ +G G+
Sbjct: 150 GDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLGCGGL 186
>UNIPROTKB|Q652A1 [details] [associations]
symbol:IAA26 "Auxin-responsive protein IAA26" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
EMBL:AP005681 EMBL:AK111128 RefSeq:NP_001063732.1 UniGene:Os.57199
EnsemblPlants:LOC_Os09g35870.1 GeneID:4347643
KEGG:dosa:Os09t0527700-01 KEGG:osa:4347643 Gramene:Q652A1
eggNOG:NOG296772 OMA:WEHAVVY ProtClustDB:CLSN2697868 Uniprot:Q652A1
Length = 140
Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 660 FVKVYKSGSVG-RSLDISRFSSYNELREELGQMFGIE--GKFEDPLRSGWQ--LVFVDRE 714
FVKV G+ R +D++ + Y EL E L MF G + W+ +V+ D +
Sbjct: 47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDG--YGEWEHAVVYEDGD 104
Query: 715 NDVLLLGDDPWEAFVSNVWYIKIL 738
D +L+GD PWE FVS+ ++++
Sbjct: 105 GDWMLVGDVPWEMFVSSCKRMRVM 128
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVE---WKFRHIF 150
F K +T SD +P++ AEK FP L S P + + + DV W+FR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKQHAEKHFP-LP-SPSPAVTKGVLINFEDVNGKVWRFRYSY 245
Query: 151 RGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 180
+ ++LT GWS FV K L AGD V F
Sbjct: 246 WNSSQSYVLTKGWSRFVKEKNLRAGDVVTF 275
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFP---------SLDFSLQPPAQELIARDLHDVEW 144
F K+LT SD +P++ AEK FP + D S L D W
Sbjct: 46 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSW 105
Query: 145 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLGIRR 194
+FR+ + + ++LT GWS FV K+L GD V F + + +L +G RR
Sbjct: 106 RFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 94 FCKTLTASDTSTHGGFSVPRRAAEKVFP----SLDFSLQPPAQELIARDLHDVE---WKF 146
F KT+T SD +P++ AEK FP + + P + + +L D W+F
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 147 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 180
R+ + + ++LT GWS FV K L AGD V F
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCF 288
>TAIR|locus:2098023 [details] [associations]
symbol:IAA30 "indole-3-acetic acid inducible 30"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;RCA;TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0010262 "somatic embryogenesis" evidence=IMP] [GO:0010583
"response to cyclopentenone" evidence=RCA] InterPro:IPR003311
InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0003700 GO:GO:0006351 GO:GO:0048364 GO:GO:0009630
GO:GO:0010262 EMBL:AL138651 PIR:T48002 HOGENOM:HOG000005696
ProtClustDB:CLSN2683572 EMBL:AY669801 IPI:IPI00529772
RefSeq:NP_191769.1 UniGene:At.50305 IntAct:Q9M1R4 STRING:Q9M1R4
EnsemblPlants:AT3G62100.1 GeneID:825383 KEGG:ath:AT3G62100
GeneFarm:3237 TAIR:At3g62100 eggNOG:NOG324376 InParanoid:Q9M1R4
OMA:EMMIMEE PhylomeDB:Q9M1R4 Genevestigator:Q9M1R4
GermOnline:AT3G62100 Uniprot:Q9M1R4
Length = 172
Score = 113 (44.8 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIE---GKFEDPL-RSGWQLVFVDRE 714
+VKV G +GR +D+ + Y++L L MF + ED L + D+E
Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKE 143
Query: 715 NDVLLLGDDPWEAFVSNVWYIKI 737
D +++GD PWE F+S+V +KI
Sbjct: 144 GDWMMVGDVPWEMFLSSVRRLKI 166
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 40/136 (29%), Positives = 62/136 (45%)
Query: 89 QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP----------SLDFSLQPPAQELIARD 138
Q + F K+LT SD +P++ AEK FP D + L D
Sbjct: 24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83
Query: 139 LHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN--EKNQLLLGIRRAI 196
WKFR+ + + ++LT GWS +V K L AGD V F + + ++L +G RR
Sbjct: 84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRG 143
Query: 197 RPPTVMPSSVLSSDSM 212
+ SV+S +++
Sbjct: 144 EASSSPAVSVVSQEAL 159
>TAIR|locus:2196573 [details] [associations]
symbol:IAA5 "indole-3-acetic acid inducible 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;RCA;TAS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=RCA] [GO:0010583 "response to
cyclopentenone" evidence=RCA] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003700 GO:GO:0006351 EMBL:AC013453 HOGENOM:HOG000238261
EMBL:X53436 EMBL:AY150496 EMBL:U18407 IPI:IPI00531814 PIR:G86289
PIR:S12244 PIR:S58492 RefSeq:NP_173011.1 UniGene:At.28674
IntAct:P33078 STRING:P33078 EnsemblPlants:AT1G15580.1 GeneID:838128
KEGG:ath:AT1G15580 GeneFarm:3151 TAIR:At1g15580 eggNOG:NOG305053
OMA:ESECVPI PhylomeDB:P33078 ProtClustDB:CLSN2912676
Genevestigator:P33078 GermOnline:AT1G15580 Uniprot:P33078
Length = 163
Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 659 TFVKVYKSGSVG-RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQL-VFVDREND 716
++VKV G+ R +D+ + Y +L L +FG F+D L+ + ++ D++ D
Sbjct: 75 SYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYINFDDTLKESECVPIYEDKDGD 134
Query: 717 VLLLGDDPWEAFVSNVWYIKIL 738
+L GD PWE F+ + ++I+
Sbjct: 135 WMLAGDVPWEMFLGSCKRLRIM 156
>UNIPROTKB|Q7Y1H8 [details] [associations]
symbol:IAA14 "Auxin-responsive protein IAA14" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 EMBL:AC093713
EMBL:AK059619 KEGG:dosa:Os03t0797800-01 Gramene:Q7Y1H8
eggNOG:NOG284674 Uniprot:Q7Y1H8
Length = 195
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 660 FVKVYKSGSVG-RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 718
+VKV G+ R +D+ + Y ELR+ L +FG + + + + D++ D++
Sbjct: 110 YVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFSADASASAAHFAVAYEDKDGDLM 169
Query: 719 LLGDDPWEAFVSNVWYIKIL 738
L GD PW+ F+S+ ++I+
Sbjct: 170 LAGDVPWDMFISSCKKLRIM 189
>TAIR|locus:2041324 [details] [associations]
symbol:IAA20 "indole-3-acetic acid inducible 20"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0009647 "skotomorphogenesis" evidence=IMP]
[GO:0010588 "cotyledon vascular tissue pattern formation"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
EMBL:AC004411 GO:GO:0009630 GO:GO:0009647 GO:GO:0010588
EMBL:AK117233 EMBL:AF348576 EMBL:U49076 IPI:IPI00547197 PIR:T02188
RefSeq:NP_182222.1 UniGene:At.10480 IntAct:O24410 STRING:O24410
DNASU:819313 EnsemblPlants:AT2G46990.1 GeneID:819313
KEGG:ath:AT2G46990 GeneFarm:3236 TAIR:At2g46990 eggNOG:NOG254610
HOGENOM:HOG000005696 InParanoid:O24410 OMA:KISRANY PhylomeDB:O24410
ProtClustDB:CLSN2683572 Genevestigator:O24410 GermOnline:AT2G46990
Uniprot:O24410
Length = 175
Score = 111 (44.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIE---GKFEDPLRS-GWQLVFVDRE 714
+VKV G +GR +D+ + Y +L L MF + ED L + D+E
Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKE 145
Query: 715 NDVLLLGDDPWEAFVSNVWYIKI 737
D +++GD PWE F+S V +KI
Sbjct: 146 GDWMMVGDVPWEMFLSTVRRLKI 168
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 565 SMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSG 602
S+ S N A+ T N +TD + + FG SSG
Sbjct: 11 SIESSSKSNPFGASSSTRNLSTDLRLGLSFGT---SSG 45
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 119 (46.9 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 230 FTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDL 289
+TV ++ P ++++ +K K++ RFRM + Y GTI ISD
Sbjct: 1350 YTVIYHVSDIP-DYLVLASKVRKSMLTDWTVPNKRFRMFYPASGW----YNGTIIEISDS 1404
Query: 290 DPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIE 324
DP+ + NS W ++KV WD++ E + RV+ WEI+
Sbjct: 1405 DPL-FPNSPWENIKVLWDDT---EEEDRVNYWEID 1435
Score = 67 (28.6 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 22/93 (23%), Positives = 44/93 (47%)
Query: 527 SGNLLNFSGAGPS---MLRQQFPQQSLGSKYEPSQVRDFVHSMSL-PSSYNGKDAAVGTE 582
+ N N+S P+ M Q +PQ S + Q+ + ++ L P++YN + T
Sbjct: 1585 NNNTSNYSYLDPNNSNMYMQTYPQNSTMQNQQQPQLNNIYYNSQLQPTNYNYTNN-FNTN 1643
Query: 583 NCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTS 615
N ++ +S + + +++ PT +S TT+
Sbjct: 1644 YSNFNNSSSNIMNYNTNNNFNSPPTATTSNTTT 1676
Score = 45 (20.9 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 36 PTVGTRVVYFPQGHSE 51
P VG + YF QGH++
Sbjct: 1217 PQVGDFIFYFYQGHTK 1232
>UNIPROTKB|Q6K846 [details] [associations]
symbol:IAA9 "Auxin-responsive protein IAA9" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
ProtClustDB:CLSN2695987 EMBL:AC069158 EMBL:AP004240 EMBL:AK073365
RefSeq:NP_001048437.1 UniGene:Os.23256
EnsemblPlants:LOC_Os02g56120.1 EnsemblPlants:LOC_Os02g56120.2
GeneID:4331061 KEGG:dosa:Os02t0805100-01 KEGG:osa:4331061
Gramene:Q6K846 eggNOG:NOG253641 OMA:ARSRACG Uniprot:Q6K846
Length = 182
Score = 112 (44.5 bits), Expect = 0.00051, P = 0.00051
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 660 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGI-----EGKFEDPLR---SGWQLVF 710
+VKV K G ++GR +D++ SSY+EL L +MF E K + +G + +
Sbjct: 94 YVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTY 153
Query: 711 VDRENDVLLLGDDPWEAFVSNVWYIKIL 738
D + D +L+GD PW+ F +V +KIL
Sbjct: 154 EDGDGDWMLVGDVPWDDFARSVKRLKIL 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 778 725 0.00086 121 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 630 (67 KB)
Total size of DFA: 401 KB (2194 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.93u 0.11s 60.04t Elapsed: 00:00:02
Total cpu time: 59.94u 0.11s 60.05t Elapsed: 00:00:03
Start: Fri May 10 19:03:44 2013 End: Fri May 10 19:03:47 2013