Query 004031
Match_columns 778
No_of_seqs 350 out of 819
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 9.6E-30 3.3E-34 238.9 14.4 114 86-199 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 3.1E-16 1E-20 150.3 12.0 96 91-196 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 4.4E-13 1.5E-17 120.7 10.5 93 91-194 8-100 (104)
4 1na6_A Ecorii, restriction end 95.2 0.02 6.9E-07 62.9 6.1 92 91-183 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 94.6 0.08 2.7E-06 47.2 7.3 52 658-717 6-58 (89)
6 2ktr_A Sequestosome-1; autopha 92.5 0.12 4.3E-06 48.1 4.9 58 656-720 18-92 (117)
7 2kkc_A Sequestosome-1; P62, PB 90.9 0.18 6.3E-06 45.9 4.1 58 658-721 5-78 (102)
8 1wmh_B Partitioning defective- 89.3 0.76 2.6E-05 40.8 6.6 68 659-733 7-76 (86)
9 1oey_J P40-PHOX, neutrophil cy 88.3 0.61 2.1E-05 42.7 5.4 58 667-750 17-78 (107)
10 1q1o_A Cell division control p 85.3 2.8 9.5E-05 38.0 8.0 73 658-732 5-85 (98)
11 1pqs_A Cell division control p 72.0 5.9 0.0002 34.3 5.5 58 673-732 6-64 (77)
12 1oey_A P67-PHOX, neutrophil cy 67.0 15 0.00051 32.3 7.0 65 659-732 6-71 (83)
13 1wj6_A KIAA0049 protein, RSGI 63.9 10 0.00035 34.6 5.5 53 659-720 15-68 (101)
14 2bkf_A Zinc-finger protein NBR 60.6 17 0.00058 32.3 6.2 51 659-718 7-58 (87)
15 2k8i_A SLYD, peptidyl-prolyl C 50.9 38 0.0013 32.8 7.6 102 172-288 3-114 (171)
16 3cgm_A SLYD, peptidyl-prolyl C 49.6 48 0.0017 31.7 8.0 100 172-288 3-110 (158)
17 2kfw_A FKBP-type peptidyl-prol 48.8 20 0.00068 35.7 5.3 102 172-288 3-114 (196)
18 2kr7_A FKBP-type peptidyl-prol 46.8 56 0.0019 30.8 7.9 105 169-288 4-119 (151)
19 4dt4_A FKBP-type 16 kDa peptid 33.5 76 0.0026 30.8 6.6 105 171-288 24-138 (169)
20 1e8p_A Endoglucanase, dockerin 33.0 13 0.00046 29.5 0.9 14 706-719 19-32 (46)
21 2jng_A Cullin-7, CUL-7; P53 bi 30.4 48 0.0017 30.4 4.3 67 248-328 12-78 (105)
22 3p8d_A Medulloblastoma antigen 30.3 65 0.0022 27.2 4.8 53 257-327 5-57 (67)
23 3pr9_A FKBP-type peptidyl-prol 29.9 2.5E+02 0.0087 26.7 9.5 105 172-288 2-123 (157)
24 3o27_A Putative uncharacterize 28.8 44 0.0015 28.5 3.4 33 164-196 31-64 (68)
25 2e63_A KIAA1787 protein; struc 28.3 37 0.0013 33.1 3.4 24 169-192 115-138 (170)
26 3s6w_A Tudor domain-containing 27.6 52 0.0018 25.7 3.6 28 258-288 1-28 (54)
27 1mhn_A SurviVal motor neuron p 27.6 59 0.002 26.0 3.9 28 258-288 3-30 (59)
28 3qii_A PHD finger protein 20; 27.0 71 0.0024 28.3 4.6 54 257-328 20-73 (85)
29 4a4f_A SurviVal of motor neuro 26.6 59 0.002 26.5 3.8 29 257-288 7-35 (64)
30 2equ_A PHD finger protein 20-l 24.0 69 0.0024 27.3 3.9 39 257-309 8-46 (74)
31 2cbp_A Cucumber basic protein; 22.4 40 0.0014 29.8 2.2 19 166-184 18-36 (96)
32 2k75_A Uncharacterized protein 21.2 1.4E+02 0.0048 26.5 5.5 46 131-196 39-88 (106)
33 2yue_A Protein neuralized; str 20.4 71 0.0024 31.1 3.7 20 173-192 107-126 (168)
34 1g5v_A SurviVal motor neuron p 20.0 91 0.0031 27.4 3.9 29 257-288 9-37 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=9.6e-30 Score=238.86 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=105.1
Q ss_pred CCCCCceeEEEecCccCCCCCCeeEEchhhhhhcCCCCCCCCCCCCcEEEEEeCCCCeEEEEEEEeCCCcceeecccchh
Q 004031 86 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 165 (778)
Q Consensus 86 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~FR~~yrg~prrhlLTtGWs~ 165 (778)
..+....+|+|+||+|||+++++|+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 45667889999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 004031 166 FVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPP 199 (778)
Q Consensus 166 FV~~K~L~aGD~VvF~R~~--~g~L~VGiRRa~r~~ 199 (778)
||++|+|++||+|+|+|.+ +++|+|++||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 467999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.66 E-value=3.1e-16 Score=150.28 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=85.3
Q ss_pred ceeEEEecCccCCCCCCeeEEchhhhhhcCCCCCCCCCCCCcEEEEEeCCCCeEEEEEEEeCCCcceeecccchhhhccc
Q 004031 91 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 170 (778)
Q Consensus 91 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~FR~~yrg~prrhlLTtGWs~FV~~K 170 (778)
..+|.|+||+||+....+|+||+++|+.+||.. ...+.+.|. |+.|.|+|+|++. +++|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~-------~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI-------SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC-------CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC-------CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 569999999999987778999999999999975 357888888 6999999999974 699999999999999
Q ss_pred CCCCCCEEEEEEccCC--cEEEEEEecC
Q 004031 171 RLVAGDSVLFIWNEKN--QLLLGIRRAI 196 (778)
Q Consensus 171 ~L~aGD~VvF~R~~~g--~L~VGiRRa~ 196 (778)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5888998874
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.43 E-value=4.4e-13 Score=120.69 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=80.3
Q ss_pred ceeEEEecCccCCCCCCeeEEchhhhhhcCCCCCCCCCCCCcEEEEEeCCCCeEEEEEEEeCCCcceeecccchhhhccc
Q 004031 91 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 170 (778)
Q Consensus 91 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~FR~~yrg~prrhlLTtGWs~FV~~K 170 (778)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.++. ++++|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4589999999994 569999999998876543 3579999999999999999874 4789999999999999
Q ss_pred CCCCCCEEEEEEccCCcEEEEEEe
Q 004031 171 RLVAGDSVLFIWNEKNQLLLGIRR 194 (778)
Q Consensus 171 ~L~aGD~VvF~R~~~g~L~VGiRR 194 (778)
+|++||.++|...++..+.|-|=|
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~ 100 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYG 100 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEEC
T ss_pred CCCCCCEEEEEEcCCCeEEEEEEC
Confidence 999999999999888888887754
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.22 E-value=0.02 Score=62.86 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=66.5
Q ss_pred ceeEEEecCccCCCCC----CeeEEchhhhhhcCCCCC-CCCCCCCcEEEE--EeCCCCeEEEEEEEeC------CCcce
Q 004031 91 TNYFCKTLTASDTSTH----GGFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 157 (778)
Q Consensus 91 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld-~~~~~p~q~L~~--~D~~G~~W~FR~~yrg------~prrh 157 (778)
...|+|.|++.|++.. ++|.+|+.....+||.|+ .....|.+.+.+ -|...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 5789999999999976 479999977999999998 334455555443 3444455599999997 34568
Q ss_pred eecccchh-hhcccCCCCCCEEEEEEc
Q 004031 158 LLTTGWSV-FVSAKRLVAGDSVLFIWN 183 (778)
Q Consensus 158 lLTtGWs~-FV~~K~L~aGD~VvF~R~ 183 (778)
.||. |-. +.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8963 332 333467789999888743
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.64 E-value=0.08 Score=47.17 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=41.4
Q ss_pred ccEEEEecccc-ceeeeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCe
Q 004031 658 RTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDV 717 (778)
Q Consensus 658 ~~~vKV~m~G~-igRkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~ 717 (778)
..-|||+-.|. +--.|+. --+|++|.++|.++|.+. ....+++.|.|.|||+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~ 58 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDP 58 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCC
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCc
Confidence 46788999994 4334444 569999999999999974 2346899999999998
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=92.46 E-value=0.12 Score=48.13 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCccEEEEeccc-----cceeeeccC-----------CCCChHHHHHHHHHHhc-ccccccCCCCCCceEEEEeCCCCeE
Q 004031 656 PTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVL 718 (778)
Q Consensus 656 ~~~~~vKV~m~G-----~igRkvDL~-----------~~~sY~eL~~~L~~MF~-~~g~L~d~~~s~~~lvY~D~EGD~m 718 (778)
....-||++..| .==|++-|. .-.+|++|+..+.++|. +. ...++|.|.|.|||+.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 446789999875 122444443 24599999999999994 43 2369999999999994
Q ss_pred ec
Q 004031 719 LL 720 (778)
Q Consensus 719 Lv 720 (778)
-+
T Consensus 91 tI 92 (117)
T 2ktr_A 91 AF 92 (117)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.90 E-value=0.18 Score=45.89 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=40.4
Q ss_pred ccEEEEeccc-----cceeeeccCC-----------CCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEecC
Q 004031 658 RTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG 721 (778)
Q Consensus 658 ~~~vKV~m~G-----~igRkvDL~~-----------~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLvG 721 (778)
..-||++..| .-=|.+-|.. ..+|++|+..+.++|.- |. ...++|.|.|.|||+.-+.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~---~~~f~l~Y~DedGDlItiS 78 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR---PGGFQAHYRAERGDLVAFS 78 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC---SSCEEEEEECTTCCEEEEC
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---cC---CCcEEEEEECCCCCEEEec
Confidence 5678888865 2224444432 24899999999999962 11 2369999999999994443
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=89.34 E-value=0.76 Score=40.80 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=49.0
Q ss_pred cEEEEecccccee-eeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEecCC-cchhhHhccee
Q 004031 659 TFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFVSNVW 733 (778)
Q Consensus 659 ~~vKV~m~G~igR-kvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLvGD-~PWe~Fv~~vk 733 (778)
.-||..-++.+=| ++|-..-.+|++|..-|+++|.+. ...+++.|.|.+||++-.-+ +=..+=+.+++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 4567666664433 566667789999999999999863 23699999999999987654 34444444554
No 9
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.34 E-value=0.61 Score=42.70 Aligned_cols=58 Identities=31% Similarity=0.352 Sum_probs=48.0
Q ss_pred ccceeee----ccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEecCCcchhhHhcceeEEEEeChhh
Q 004031 667 GSVGRSL----DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPED 742 (778)
Q Consensus 667 G~igRkv----DL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLvGD~PWe~Fv~~vkri~I~~~~e 742 (778)
|...|.| ||+.--.|.+|..-..+-|.-+ +=.|-|.|.|||+ |+|++.+|
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDL-----------------IrilddeD 70 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDL-----------------VRLLSDED 70 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCE-----------------EECCSHHH
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCE-----------------EEEcchHH
Confidence 3344544 6677889999999999999843 4689999999999 99999999
Q ss_pred hhcccccc
Q 004031 743 VQKMGEQG 750 (778)
Q Consensus 743 v~~m~~~~ 750 (778)
+.-|-.++
T Consensus 71 v~lmi~~s 78 (107)
T 1oey_J 71 VALMVRQA 78 (107)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99997766
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=85.31 E-value=2.8 Score=38.03 Aligned_cols=73 Identities=11% Similarity=0.278 Sum_probs=53.9
Q ss_pred ccEEEEeccc-----cce--eeeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEecCC-cchhhHh
Q 004031 658 RTFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFV 729 (778)
Q Consensus 658 ~~~vKV~m~G-----~ig--RkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLvGD-~PWe~Fv 729 (778)
..-|||+-.. +++ |.|=+..--+|++|+..+.+-|++. .-.+ -+...+|-|+|.|||+..+++ +=|++-+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-cccc-ccceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 3578888653 134 6777778889999999999999975 1111 123579999999999977765 6788887
Q ss_pred cce
Q 004031 730 SNV 732 (778)
Q Consensus 730 ~~v 732 (778)
.++
T Consensus 83 e~~ 85 (98)
T 1q1o_A 83 EML 85 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=72.03 E-value=5.9 Score=34.29 Aligned_cols=58 Identities=14% Similarity=0.358 Sum_probs=43.0
Q ss_pred eccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEecC-CcchhhHhcce
Q 004031 673 LDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG-DDPWEAFVSNV 732 (778)
Q Consensus 673 vDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLvG-D~PWe~Fv~~v 732 (778)
|=+..--+|++|...+.+-|++. ..+..+..-+|-|+|.|||+...+ |+=|++-+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33455568999999999999964 111113568999999999987665 47799888776
No 12
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=66.97 E-value=15 Score=32.32 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred cEEEEeccccceeeeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEe-CCCCeEecCCcchhhHhcce
Q 004031 659 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD-RENDVLLLGDDPWEAFVSNV 732 (778)
Q Consensus 659 ~~vKV~m~G~igRkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D-~EGD~mLvGD~PWe~Fv~~v 732 (778)
.=|||+-. +.-.|....=-+|.+|++.|.+-+.+.++ .=+|-|.| .+|.+++.+|.=++.-...|
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~ 71 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQV 71 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTTC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHhc
Confidence 45788877 78888888889999999999999988543 23889999 67888899999998877764
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=63.91 E-value=10 Score=34.62 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.2
Q ss_pred cEEEEeccc-cceeeeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeEec
Q 004031 659 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 720 (778)
Q Consensus 659 ~~vKV~m~G-~igRkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~mLv 720 (778)
.-.||.-.| ..=--|.-..--.+++|...|..+|++. .++|.|.|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 467899889 4333565555678999999999999984 4699999999998655
No 14
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=60.58 E-value=17 Score=32.35 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=39.7
Q ss_pred cEEEEeccc-cceeeeccCCCCChHHHHHHHHHHhcccccccCCCCCCceEEEEeCCCCeE
Q 004031 659 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVL 718 (778)
Q Consensus 659 ~~vKV~m~G-~igRkvDL~~~~sY~eL~~~L~~MF~~~g~L~d~~~s~~~lvY~D~EGD~m 718 (778)
.-.||.-.| ..---|.-..--++++|...+..+|++. .++|.|.|.|||-.
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v 58 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEV 58 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEE
Confidence 356888888 3333464455678999999999999984 47999999999983
No 15
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=50.92 E-value=38 Score=32.83 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCcc-ccCCccchhHHHHHHHHHhcCCeEEEEEecCCC------CC
Q 004031 172 LVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PS 241 (778)
Q Consensus 172 L~aGD~VvF-~R~--~~g~L~VGiRRa~r~~~~~pssv-~s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pras------~s 241 (778)
.+.||.|.+ |+. .+|+.+-.-+.. .|..+ +....+--| +.+|......|..++|.--|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568899877 443 477766543211 23322 222223233 46677777788888887765542 23
Q ss_pred cceechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 242 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 242 EFVVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
-+.||++.|-.. ..+.+||+|.+ ++++. + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 467888876322 36999999985 45553 3 6899999975
No 16
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=49.63 E-value=48 Score=31.67 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCCCEEEE-EEc-cCCcEEEEEEecCCCCCCCCCccccCCccchhHHHHHHHHHhcCCeEEEEEecCCC------CCcc
Q 004031 172 LVAGDSVLF-IWN-EKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PSEF 243 (778)
Q Consensus 172 L~aGD~VvF-~R~-~~g~L~VGiRRa~r~~~~~pssv~s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pras------~sEF 243 (778)
.+.||.|.+ |+. .+|+.+-.-+ .. -.+....+-.| +.+|......|..++|.--|... ..-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~-------f~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LS-------YLHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EE-------EETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EE-------EEECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888877 332 5777655443 00 01112222223 45677777788888888765432 2447
Q ss_pred eechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 244 VIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 244 VVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
.||+..|-+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7888876322 37999999985 44442 567899999975
No 17
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=48.80 E-value=20 Score=35.69 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCeEEEEEecCC------CCC
Q 004031 172 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA------SPS 241 (778)
Q Consensus 172 L~aGD~VvF-~R--~~~g~L~VGiRRa~r~~~~~pssv~-s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pra------s~s 241 (778)
.+.||.|.+ |+ .++|+++-.-+.. .|..++ ....+-.| |.+|......|..++|.--|-. ...
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999887 43 3577765543211 233322 22233223 4566666778888888866543 234
Q ss_pred cceechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 242 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 242 EFVVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
-+.||++.|... ..+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 577888876321 36999999974 55552 57899999875
No 18
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=46.77 E-value=56 Score=30.82 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEE-EEc--c-CCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCeEEEEEecCC-----
Q 004031 169 AKRLVAGDSVLF-IWN--E-KNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA----- 238 (778)
Q Consensus 169 ~K~L~aGD~VvF-~R~--~-~g~L~VGiRRa~r~~~~~pssv~-s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pra----- 238 (778)
.+..+.||.|.+ |+. . +|+.+-.-+. ..|.... ....+--| +.+|......|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 456778999987 432 3 7776554321 1233322 22223233 4566777778888888765543
Q ss_pred -CCCcceechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 239 -SPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 239 -s~sEFVVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
.-.-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 234577888887 2 247999999985 44443 567899999975
No 19
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=33.51 E-value=76 Score=30.84 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCeEEEEEecCCCCCc----
Q 004031 171 RLVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSE---- 242 (778)
Q Consensus 171 ~L~aGD~VvF-~R~--~~g~L~VGiRRa~r~~~~~pssv~-s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pras~sE---- 242 (778)
..+.||.|.+ |+. .+|+++-.-+.. ..|...+ ....+-.| +.+|......|..++|..-|...-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999988 443 578765543211 1233222 22222223 56777777888899998766543322
Q ss_pred --ceechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 243 --FVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 243 --FVVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
+.||++.+-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888876432 35899999976 44442 467899999975
No 20
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=33.03 E-value=13 Score=29.47 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=11.7
Q ss_pred ceEEEEeCCCCeEe
Q 004031 706 WQLVFVDRENDVLL 719 (778)
Q Consensus 706 ~~lvY~D~EGD~mL 719 (778)
=.|+|+|.+|||=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 36999999999954
No 21
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=30.44 E-value=48 Score=30.41 Aligned_cols=67 Identities=28% Similarity=0.298 Sum_probs=41.6
Q ss_pred hHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCC
Q 004031 248 TKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 327 (778)
Q Consensus 248 ~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~ 327 (778)
+.|..=+. .+..+|||+||.=.-|+-+. -=.|++. ++. +- -+ .+||.|..... .-.|+-=.||.+.
T Consensus 12 ~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~G-----l~--~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 12 NTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NG-----VP--PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp HHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TT-----SS--EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred hhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-CC-----Cc--cceeeehhcCc---eEEEEeehhhhcC
Confidence 55666665 37999999999633333221 2368887 432 22 22 89999996653 3456666777765
Q ss_pred C
Q 004031 328 T 328 (778)
Q Consensus 328 ~ 328 (778)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=30.32 E-value=65 Score=27.24 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCcccccEEEEeeeccccccceeeeEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCC
Q 004031 257 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 327 (778)
Q Consensus 257 ~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~ 327 (778)
..|.+|+++--++ ++ .++|-+||++|... ....|..++.. .+.|..=+|.|++
T Consensus 5 ~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 33 38999999999752 45889999833 2556666666644
No 23
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=29.88 E-value=2.5e+02 Score=26.67 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCCCCEEEE-EEc-cCCcEEEEEEec-----CCC---CCCCCCcc-ccCCccchhHHHHHHHHHhcCCeEEEEEecCCCC
Q 004031 172 LVAGDSVLF-IWN-EKNQLLLGIRRA-----IRP---PTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP 240 (778)
Q Consensus 172 L~aGD~VvF-~R~-~~g~L~VGiRRa-----~r~---~~~~pssv-~s~~sm~~gvla~A~~aa~~~~~F~V~Y~Pras~ 240 (778)
.+.||.|.+ |+. -+|+++-.-+.. .-. ....|..+ +....+-.| +.+|......|..++|+--|-..-
T Consensus 2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G-~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPG-LDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHH-HHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCcHHHH-HHHHHcCCCCCCEEEEEECcHHhc
Confidence 457888887 332 167766543321 000 00124332 222233333 577888889999999986554322
Q ss_pred ------CcceechhHHHHhhhcCCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 241 ------SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 241 ------sEFVVp~~ky~~a~~~~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
.=..||++.+-+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2367888887653 135788999975 332 589999975
No 24
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=28.78 E-value=44 Score=28.49 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.7
Q ss_pred hhhhcccCCCCCCEEEEEEc-cCCcEEEEEEecC
Q 004031 164 SVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRAI 196 (778)
Q Consensus 164 s~FV~~K~L~aGD~VvF~R~-~~g~L~VGiRRa~ 196 (778)
..++++-+|+.||.|...-+ .+|++.++.+|-+
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 48999999999999998775 5889999999954
No 25
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.27 E-value=37 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred ccCCCCCCEEEEEEccCCcEEEEE
Q 004031 169 AKRLVAGDSVLFIWNEKNQLLLGI 192 (778)
Q Consensus 169 ~K~L~aGD~VvF~R~~~g~L~VGi 192 (778)
-..|.+||.|-|+++.+|+|++.|
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEE
T ss_pred ccccCCCCEEEEEEcCCcEEEEEE
Confidence 446789999999999999999987
No 26
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=27.64 E-value=52 Score=25.73 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred CcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 258 RVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 258 ~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
.|.+|+..--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995443 899999999963
No 27
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=27.60 E-value=59 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 258 RVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 258 ~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
.|.+|+.+-..|..+. .||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 6999999999995333 899999999964
No 28
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=27.03 E-value=71 Score=28.27 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=40.1
Q ss_pred CCcccccEEEEeeeccccccceeeeEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCCC
Q 004031 257 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 328 (778)
Q Consensus 257 ~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~~ 328 (778)
..|.+|+++--++ ++ .++|-+||++|... ....|.+++... +.|.+=+|.|++.
T Consensus 20 ~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~~----etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGVV----QTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSCE----EEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCCe----EEecHHHcccCCh
Confidence 4799999999999 44 38999999999852 358999998432 5566666666543
No 29
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=26.59 E-value=59 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 257 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 257 ~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
..|.+|+.+.-.|..+. .||.++|.+|..
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 47999999999995343 899999999974
No 30
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.02 E-value=69 Score=27.35 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCcccccEEEEeeeccccccceeeeEEEEeccCCCCCCCCCCccceeeccCCC
Q 004031 257 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDES 309 (778)
Q Consensus 257 ~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d~dp~rWp~S~WR~LkV~WDe~ 309 (778)
..|.+|+++.-+|. +. .||.+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 47999999999996 33 899999999963 1 3567888765
No 31
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=22.38 E-value=40 Score=29.78 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=15.7
Q ss_pred hhcccCCCCCCEEEEEEcc
Q 004031 166 FVSAKRLVAGDSVLFIWNE 184 (778)
Q Consensus 166 FV~~K~L~aGD~VvF~R~~ 184 (778)
....|+..+||+|+|--..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 4568999999999997654
No 32
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.19 E-value=1.4e+02 Score=26.48 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCeEEEEEEEeCCCcceeecccchhhhcccCCCCCCEEEEEEc----cCCcEEEEEEecC
Q 004031 131 AQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAI 196 (778)
Q Consensus 131 ~q~L~~~D~~G~~W~FR~~yrg~prrhlLTtGWs~FV~~K~L~aGD~VvF~R~----~~g~L~VGiRRa~ 196 (778)
-..+.+.|..| +.+++.|+.. |.+||.|.+... -+|++.+-+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 34699999999 6788888643 889999998743 2677777775543
No 33
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.42 E-value=71 Score=31.05 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.7
Q ss_pred CCCCEEEEEEccCCcEEEEE
Q 004031 173 VAGDSVLFIWNEKNQLLLGI 192 (778)
Q Consensus 173 ~aGD~VvF~R~~~g~L~VGi 192 (778)
..||.+.|+++.+|+|++.|
T Consensus 107 ~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEE
T ss_pred cCCCEEEEEEcCCCEEEEEE
Confidence 67999999999999999988
No 34
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.05 E-value=91 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCcccccEEEEeeeccccccceeeeEEEEecc
Q 004031 257 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 288 (778)
Q Consensus 257 ~~ws~GMRFkM~fE~Eds~~~r~~GTI~gv~d 288 (778)
..|.+|+.+.-.|..+. .||.++|.+|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 47999999999994333 899999999964
Done!