BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004032
         (778 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QAX|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Hmg-Coa And Nad+
 pdb|1QAX|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Hmg-Coa And Nad+
 pdb|1QAY|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Mevalonate And Nad+
 pdb|1QAY|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Mevalonate And Nad+
 pdb|1R31|A Chain A, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
           With Hmg-Coa
 pdb|1R31|B Chain B, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
           With Hmg-Coa
 pdb|1R7I|A Chain A, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
           2.2 Angstroms Resolution.
 pdb|1R7I|B Chain B, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
           2.2 Angstroms Resolution.
 pdb|1T02|A Chain A, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
           Reductase
 pdb|1T02|B Chain B, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
           Reductase
          Length = 428

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 184 LVKEAMKVVRVHLGTFKLLEEKTVPGIVDKFGWCTWDAFYLQVHPKGVYEGVKGLV 239
           L +  +++    L T +   E  + GI+D + +   D +    H KG+  G+  L+
Sbjct: 222 LARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDPLI 277


>pdb|2J61|A Chain A, L-ficolin Complexed To N-acetylglucosamine (forme C)
          Length = 218

 Score = 31.6 bits (70), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 278 QMPCRLIDFEENYKFRDYKSPRVPS-----NKGMGAFV 310
           ++   L+DFE+NY+F  Y+S RV       N  +GAFV
Sbjct: 95  ELRTDLVDFEDNYQFAKYRSFRVADEAEKYNLVLGAFV 132


>pdb|2J0G|A Chain A, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0G|B Chain B, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0G|C Chain C, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0G|D Chain D, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0G|E Chain E, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0G|F Chain F, L-Ficolin Complexed To N-Acetyl-Mannosamine
 pdb|2J0H|A Chain A, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0H|B Chain B, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0H|C Chain C, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0H|D Chain D, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0H|E Chain E, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0H|F Chain F, L-Ficolin Complexed To Acetyl-Choline
 pdb|2J0Y|A Chain A, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J0Y|B Chain B, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J0Y|C Chain C, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J0Y|D Chain D, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J0Y|E Chain E, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J0Y|F Chain F, L-ficolin Complexed To B-1,3-d-glucan
 pdb|2J1G|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J1G|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J1G|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J1G|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J1G|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J1G|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein
 pdb|2J2P|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J2P|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J2P|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J2P|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J2P|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J2P|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
 pdb|2J3G|A Chain A, L-ficolin
 pdb|2J3G|B Chain B, L-ficolin
 pdb|2J3G|C Chain C, L-ficolin
 pdb|2J3G|D Chain D, L-ficolin
 pdb|2J3G|E Chain E, L-ficolin
 pdb|2J3G|F Chain F, L-ficolin
 pdb|2J3U|A Chain A, L-Ficolin Complexed To Galactose
 pdb|2J3U|B Chain B, L-Ficolin Complexed To Galactose
 pdb|2J3U|C Chain C, L-Ficolin Complexed To Galactose
 pdb|2J3U|D Chain D, L-Ficolin Complexed To Galactose
 pdb|2J3U|E Chain E, L-Ficolin Complexed To Galactose
 pdb|2J3U|F Chain F, L-Ficolin Complexed To Galactose
 pdb|2J61|B Chain B, L-ficolin Complexed To N-acetylglucosamine (forme C)
          Length = 218

 Score = 30.0 bits (66), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 278 QMPCRLIDFEENYKFRDYKSPRVPS-----NKGMGAFV 310
           ++   L+DFE+NY+F  Y+S +V       N  +GAFV
Sbjct: 95  ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFV 132


>pdb|2J3F|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
 pdb|2J3F|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
 pdb|2J3F|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
 pdb|2J3F|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
 pdb|2J3F|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
 pdb|2J3O|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
 pdb|2J3O|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
 pdb|2J3O|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
 pdb|2J3O|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
 pdb|2J3O|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
 pdb|2J3O|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
          Length = 219

 Score = 30.0 bits (66), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 278 QMPCRLIDFEENYKFRDYKSPRVPS-----NKGMGAFV 310
           ++   L+DFE+NY+F  Y+S +V       N  +GAFV
Sbjct: 96  ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFV 133


>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
           Mortierella Vinacea
          Length = 397

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 209 GIVDKFGWCTWDAFYLQVHPKGVYEGVKGLVEGGCPP---GLVLIDDGWQ 255
            I  + GW TW+ +   V  + + +  K +   G        V+IDD WQ
Sbjct: 6   AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQ 55


>pdb|3MDZ|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vii [isoform
           1], Ca7
          Length = 281

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 41  QVPINIIATPSPFTSANKTKHTA------------GCFVGFDADESSDRHVVPIGKLNGI 88
           Q PINII++ + ++ + +    +            G  V  D ++S DR VV  G L G 
Sbjct: 49  QSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGHSVQVDFNDSDDRTVVTGGPLEGP 108

Query: 89  RFMSIFRFKAWWTTHWVGNS----GKDMEHETHLM 119
             +  F F  W   H VG+     GK    E HL+
Sbjct: 109 YRLKQFHFH-WGKKHDVGSEHTVDGKSFPSELHLV 142


>pdb|2J3F|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
          Length = 219

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 278 QMPCRLIDFEENYKFRDYKSPRVPS-----NKGMGAFV 310
           ++   L+DFE+NY+F  Y+S +V       N  +GAFV
Sbjct: 96  ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFV 133


>pdb|3ML5|A Chain A, Crystal Structure Of The C183sC217S MUTANT OF HUMAN CA VII
           IN COMPLEX With Acetazolamide
          Length = 269

 Score = 29.3 bits (64), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 41  QVPINIIATPSPFTSANKTKHTA------------GCFVGFDADESSDRHVVPIGKLNGI 88
           Q PINII++ + ++ + +    +            G  V  D ++S DR VV  G L G 
Sbjct: 35  QSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGHSVQVDFNDSDDRTVVTGGPLEGP 94

Query: 89  RFMSIFRFKAWWTTHWVGNS----GKDMEHETHLM 119
             +  F F  W   H VG+     GK    E HL+
Sbjct: 95  YRLKQFHFH-WGKKHDVGSEHTVDGKSFPSELHLV 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,295,165
Number of Sequences: 62578
Number of extensions: 1168668
Number of successful extensions: 2428
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2427
Number of HSP's gapped (non-prelim): 8
length of query: 778
length of database: 14,973,337
effective HSP length: 106
effective length of query: 672
effective length of database: 8,340,069
effective search space: 5604526368
effective search space used: 5604526368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)