Query 004033
Match_columns 778
No_of_seqs 402 out of 1514
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 16:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 1.5E-43 3.1E-48 413.6 25.3 554 39-705 24-625 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 7.3E-27 1.6E-31 219.5 11.5 106 203-310 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.4E-26 3E-31 214.3 11.8 104 203-306 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.5E-26 3.2E-31 213.8 10.9 102 204-305 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 4.1E-26 9E-31 207.3 9.8 95 206-302 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 9.4E-26 2E-30 205.2 9.8 99 205-303 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.4E-25 3E-30 203.8 9.8 96 206-303 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 3.2E-25 6.9E-30 207.4 11.2 102 203-306 11-112 (115)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 2.2E-25 4.7E-30 204.0 9.7 98 206-303 2-102 (102)
10 cd05507 Bromo_brd8_like Bromod 99.9 4.8E-25 1E-29 202.7 10.9 100 203-304 2-101 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.8E-25 8.3E-30 202.5 9.9 98 206-303 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 5.5E-25 1.2E-29 201.9 11.0 101 202-302 2-102 (103)
13 cd05502 Bromo_tif1_like Bromod 99.9 1.4E-24 3E-29 201.2 11.9 101 203-306 3-106 (109)
14 cd05501 Bromo_SP100C_like Brom 99.9 1.4E-24 3.1E-29 198.4 11.5 97 205-306 3-99 (102)
15 cd05510 Bromo_SPT7_like Bromod 99.9 1.5E-24 3.3E-29 201.9 10.9 102 203-306 6-109 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 2.3E-24 4.9E-29 196.9 10.6 99 205-305 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 2.2E-24 4.9E-29 196.6 10.3 97 203-302 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 3.3E-24 7.2E-29 198.2 9.5 100 205-306 2-107 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 8.7E-24 1.9E-28 192.4 9.4 92 205-298 2-93 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 1.8E-23 3.8E-28 194.9 10.5 102 203-306 2-107 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 1.7E-23 3.6E-28 190.6 9.4 92 205-298 2-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 3.3E-23 7.1E-28 193.1 10.4 102 207-310 3-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 7.5E-23 1.6E-27 187.8 9.2 97 205-303 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 7.8E-23 1.7E-27 188.4 9.3 96 206-303 2-103 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 2E-22 4.2E-27 188.1 10.0 101 205-307 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 6E-22 1.3E-26 188.7 12.1 105 199-304 19-126 (128)
27 smart00297 BROMO bromo domain. 99.9 6.5E-22 1.4E-26 181.1 10.8 102 202-305 5-106 (107)
28 cd05517 Bromo_polybromo_II Bro 99.9 3.6E-22 7.9E-27 183.4 8.8 94 206-301 2-101 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 7E-22 1.5E-26 182.4 9.8 96 205-302 3-104 (106)
30 cd05520 Bromo_polybromo_III Br 99.9 5.6E-22 1.2E-26 182.2 9.1 91 210-302 6-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 7.3E-22 1.6E-26 181.4 9.0 94 207-302 3-102 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.2E-20 2.6E-25 173.6 9.2 94 207-302 4-103 (104)
33 PF00439 Bromodomain: Bromodom 99.8 1.3E-20 2.8E-25 165.2 8.5 84 209-294 1-84 (84)
34 cd04369 Bromodomain Bromodomai 99.8 1.5E-20 3.3E-25 167.0 8.9 96 206-303 2-99 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.8E-20 6E-25 171.8 9.8 95 205-303 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.3E-19 2.8E-24 167.9 10.9 98 210-307 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 2.6E-17 5.5E-22 152.5 10.4 100 204-307 3-108 (110)
38 COG5076 Transcription factor i 99.7 9E-17 1.9E-21 178.3 9.5 105 203-309 141-251 (371)
39 KOG1245 Chromatin remodeling c 99.7 9.1E-17 2E-21 199.8 7.2 95 209-306 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 4.9E-13 1.1E-17 155.8 5.7 101 204-306 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 8.1E-13 1.7E-17 123.8 4.5 81 204-284 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.0 2.9E-10 6.4E-15 137.8 7.8 103 202-306 563-665 (1051)
43 KOG0386 Chromatin remodeling c 98.9 1.7E-09 3.7E-14 128.4 6.8 100 207-308 1027-1132(1157)
44 cd05491 Bromo_TBP7_like Bromod 98.8 3.8E-09 8.3E-14 98.9 5.9 41 245-285 63-103 (119)
45 KOG0008 Transcription initiati 98.7 9.2E-09 2E-13 124.7 5.7 94 210-305 1388-1481(1563)
46 KOG1827 Chromatin remodeling c 98.7 1.6E-08 3.6E-13 116.9 7.5 99 203-303 51-155 (629)
47 KOG0008 Transcription initiati 98.7 2.4E-08 5.2E-13 121.2 8.2 102 206-309 1263-1364(1563)
48 KOG1474 Transcription initiati 98.5 2.4E-08 5.3E-13 118.3 1.7 91 215-305 3-93 (640)
49 KOG1472 Histone acetyltransfer 98.4 1.8E-07 3.8E-12 110.1 4.6 75 203-286 292-366 (720)
50 KOG1828 IRF-2-binding protein 97.9 2.6E-05 5.7E-10 85.6 7.9 83 212-297 216-298 (418)
51 KOG1828 IRF-2-binding protein 97.9 2.4E-06 5.2E-11 93.5 -0.6 95 207-303 22-116 (418)
52 COG5076 Transcription factor i 97.7 7.5E-06 1.6E-10 91.5 -0.7 191 34-306 172-363 (371)
53 KOG1029 Endocytic adaptor prot 96.4 0.012 2.7E-07 69.6 9.0 47 643-689 359-410 (1118)
54 PF11600 CAF-1_p150: Chromatin 95.8 0.41 8.8E-06 50.1 16.6 8 745-752 206-213 (216)
55 cd05493 Bromo_ALL-1 Bromodomai 95.2 0.031 6.7E-07 54.0 5.3 61 246-306 59-119 (131)
56 PTZ00266 NIMA-related protein 95.2 0.35 7.6E-06 60.8 15.5 16 284-299 222-237 (1021)
57 KOG1029 Endocytic adaptor prot 93.6 0.23 5.1E-06 59.3 8.6 19 665-683 401-419 (1118)
58 PLN03086 PRLI-interacting fact 93.5 0.19 4.1E-06 59.3 7.9 61 643-704 23-83 (567)
59 PF09726 Macoilin: Transmembra 92.3 10 0.00022 46.4 20.3 44 595-638 428-474 (697)
60 PTZ00266 NIMA-related protein 91.7 1.6 3.4E-05 55.2 12.8 13 111-123 57-69 (1021)
61 PF13904 DUF4207: Domain of un 90.9 7.5 0.00016 42.0 15.5 6 735-740 250-255 (264)
62 cd05497 Bromo_Brdt_I_like Brom 89.8 0.049 1.1E-06 50.9 -2.0 55 38-97 36-90 (107)
63 KOG0163 Myosin class VI heavy 89.1 2.3 5E-05 51.2 10.3 20 406-425 771-790 (1259)
64 KOG0644 Uncharacterized conser 88.1 0.5 1.1E-05 57.2 4.3 59 243-301 1050-1108(1113)
65 KOG0163 Myosin class VI heavy 87.5 1.8 3.9E-05 52.1 8.2 14 291-304 477-490 (1259)
66 KOG1144 Translation initiation 86.9 2.1 4.5E-05 51.8 8.3 6 641-646 237-242 (1064)
67 cd05518 Bromo_polybromo_IV Bro 86.7 0.095 2.1E-06 48.6 -2.1 54 39-97 36-89 (103)
68 KOG0732 AAA+-type ATPase conta 84.9 0.43 9.3E-06 59.7 1.6 64 222-285 533-601 (1080)
69 KOG2072 Translation initiation 84.7 5.9 0.00013 48.4 10.6 74 613-690 568-644 (988)
70 cd05495 Bromo_cbp_like Bromodo 84.4 0.17 3.6E-06 47.3 -1.7 55 38-97 35-89 (108)
71 PTZ00121 MAEBL; Provisional 83.1 8.5 0.00019 49.7 11.4 15 601-615 1121-1135(2084)
72 PRK06569 F0F1 ATP synthase sub 83.1 12 0.00026 37.5 10.6 98 609-708 37-135 (155)
73 cd05513 Bromo_brd7_like Bromod 81.9 0.14 3E-06 47.1 -3.2 55 38-97 30-84 (98)
74 cd05501 Bromo_SP100C_like Brom 81.2 0.23 5E-06 46.2 -2.1 52 37-93 28-79 (102)
75 cd05507 Bromo_brd8_like Bromod 80.5 0.23 5E-06 46.0 -2.4 55 38-97 32-86 (104)
76 cd05511 Bromo_TFIID Bromodomai 80.0 0.44 9.6E-06 44.8 -0.6 79 38-127 29-107 (112)
77 cd05509 Bromo_gcn5_like Bromod 80.0 0.25 5.4E-06 45.3 -2.3 55 38-97 30-84 (101)
78 cd05524 Bromo_polybromo_I Brom 79.8 0.31 6.7E-06 46.0 -1.8 55 38-97 37-91 (113)
79 cd05508 Bromo_RACK7 Bromodomai 79.3 0.21 4.6E-06 46.0 -3.0 55 38-97 31-85 (99)
80 cd05504 Bromo_Acf1_like Bromod 79.2 0.3 6.4E-06 46.2 -2.1 55 38-97 41-95 (115)
81 cd05496 Bromo_WDR9_II Bromodom 79.0 0.36 7.8E-06 46.1 -1.6 50 38-92 34-83 (119)
82 cd05520 Bromo_polybromo_III Br 78.5 0.24 5.2E-06 46.0 -2.9 55 38-97 35-89 (103)
83 KOG4364 Chromatin assembly fac 78.4 21 0.00045 43.0 11.8 25 665-689 341-366 (811)
84 cd05505 Bromo_WSTF_like Bromod 76.7 0.32 6.9E-06 44.6 -2.6 55 38-97 29-83 (97)
85 cd05517 Bromo_polybromo_II Bro 75.4 0.33 7.2E-06 45.0 -2.9 55 38-97 35-89 (103)
86 cd05512 Bromo_brd1_like Bromod 75.2 0.3 6.5E-06 44.9 -3.2 55 38-97 30-84 (98)
87 cd05529 Bromo_WDR9_I_like Brom 75.1 0.4 8.7E-06 46.2 -2.5 55 38-97 57-111 (128)
88 cd05528 Bromo_AAA Bromodomain; 74.3 0.19 4.2E-06 47.3 -4.8 51 38-93 32-82 (112)
89 PHA03308 transcriptional regul 74.1 2.4 5.3E-05 50.6 3.0 13 405-417 1192-1204(1463)
90 cd05521 Bromo_Rsc1_2_I Bromodo 73.7 0.42 9E-06 44.7 -2.7 67 38-127 36-102 (106)
91 TIGR03825 FliH_bacil flagellar 73.6 11 0.00023 40.4 7.6 83 601-683 4-92 (255)
92 PRK00409 recombination and DNA 73.4 22 0.00048 44.3 11.2 48 608-657 502-549 (782)
93 KOG4661 Hsp27-ERE-TATA-binding 72.5 20 0.00043 42.4 9.6 9 413-421 421-429 (940)
94 KOG2072 Translation initiation 71.9 22 0.00048 43.7 10.2 39 627-665 772-819 (988)
95 cd05499 Bromo_BDF1_2_II Bromod 71.7 0.48 1E-05 43.5 -2.8 55 38-97 34-88 (102)
96 KOG3375 Phosphoprotein/predict 70.8 15 0.00033 36.3 7.0 79 604-685 86-169 (174)
97 PF09802 Sec66: Preprotein tra 70.0 1.1E+02 0.0024 31.7 13.5 63 588-652 65-135 (190)
98 cd05515 Bromo_polybromo_V Brom 69.0 0.73 1.6E-05 42.8 -2.2 55 38-97 35-89 (105)
99 PF07218 RAP1: Rhoptry-associa 67.8 60 0.0013 38.6 12.1 22 638-659 238-259 (782)
100 COG4942 Membrane-bound metallo 67.6 32 0.00069 39.7 9.9 81 621-703 196-284 (420)
101 cd05516 Bromo_SNF2L2 Bromodoma 67.4 0.84 1.8E-05 42.6 -2.2 55 38-97 36-90 (107)
102 KOG2002 TPR-containing nuclear 66.6 23 0.0005 44.3 9.0 30 238-267 262-292 (1018)
103 PHA03308 transcriptional regul 66.4 5 0.00011 48.1 3.3 12 245-256 968-979 (1463)
104 KOG2002 TPR-containing nuclear 65.8 27 0.00059 43.8 9.4 21 639-662 841-861 (1018)
105 KOG2140 Uncharacterized conser 65.7 4.5 9.7E-05 47.3 2.7 23 260-282 227-250 (739)
106 cd05525 Bromo_ASH1 Bromodomain 65.0 0.73 1.6E-05 43.0 -3.1 56 37-97 36-91 (106)
107 KOG3054 Uncharacterized conser 64.8 37 0.0008 36.4 8.9 15 680-694 172-186 (299)
108 PF13904 DUF4207: Domain of un 64.7 1.5E+02 0.0032 32.2 14.0 21 667-687 195-215 (264)
109 cd05503 Bromo_BAZ2A_B_like Bro 64.5 0.94 2E-05 41.4 -2.4 54 39-97 30-83 (97)
110 PF06936 Selenoprotein_S: Sele 63.8 53 0.0011 34.1 9.8 30 621-650 70-99 (190)
111 cd05510 Bromo_SPT7_like Bromod 63.7 1.1 2.4E-05 42.3 -2.1 51 38-93 37-87 (112)
112 cd05498 Bromo_Brdt_II_like Bro 63.6 0.8 1.7E-05 42.0 -3.0 55 38-97 34-88 (102)
113 KOG2891 Surface glycoprotein [ 63.6 32 0.00069 37.4 8.3 18 631-648 331-348 (445)
114 smart00297 BROMO bromo domain. 63.4 1 2.2E-05 41.1 -2.5 50 39-93 37-86 (107)
115 TIGR01069 mutS2 MutS2 family p 63.1 57 0.0012 40.7 11.7 22 105-126 147-168 (771)
116 PTZ00491 major vault protein; 62.6 19 0.00042 44.6 7.4 37 677-714 769-805 (850)
117 PRK06800 fliH flagellar assemb 61.8 57 0.0012 33.7 9.3 32 657-688 69-100 (228)
118 PLN03086 PRLI-interacting fact 61.2 20 0.00044 42.8 7.1 17 630-646 6-22 (567)
119 PF07888 CALCOCO1: Calcium bin 60.9 52 0.0011 39.2 10.3 103 598-706 333-450 (546)
120 PRK09510 tolA cell envelope in 60.6 50 0.0011 37.8 9.8 10 641-650 105-114 (387)
121 KOG1144 Translation initiation 60.0 43 0.00093 41.2 9.4 8 702-709 339-346 (1064)
122 cd05519 Bromo_SNF2 Bromodomain 59.9 1 2.2E-05 41.5 -3.0 55 38-97 35-89 (103)
123 PRK06568 F0F1 ATP synthase sub 59.7 78 0.0017 31.7 9.9 29 610-639 32-60 (154)
124 cd05500 Bromo_BDF1_2_I Bromodo 59.5 1.1 2.4E-05 41.3 -2.9 55 38-97 35-89 (103)
125 PF05672 MAP7: MAP7 (E-MAP-115 59.3 55 0.0012 33.4 8.8 25 627-651 43-67 (171)
126 PLN02316 synthase/transferase 58.3 23 0.00051 45.2 7.3 15 398-412 100-114 (1036)
127 PRK01558 V-type ATP synthase s 58.2 81 0.0018 32.6 10.2 62 631-692 22-84 (198)
128 PF09726 Macoilin: Transmembra 58.1 54 0.0012 40.4 10.2 15 212-226 42-58 (697)
129 TIGR02794 tolA_full TolA prote 57.6 57 0.0012 36.8 9.6 12 652-663 143-154 (346)
130 PF05110 AF-4: AF-4 proto-onco 56.4 14 0.00031 47.7 5.1 19 498-516 442-461 (1191)
131 TIGR01069 mutS2 MutS2 family p 56.1 80 0.0017 39.4 11.4 17 643-659 544-560 (771)
132 KOG1827 Chromatin remodeling c 56.0 1.9 4.1E-05 51.5 -2.4 76 222-299 213-288 (629)
133 PRK11546 zraP zinc resistance 55.9 94 0.002 30.9 9.6 59 580-638 33-100 (143)
134 PF07946 DUF1682: Protein of u 55.7 43 0.00092 37.2 8.1 8 396-403 110-117 (321)
135 PF03154 Atrophin-1: Atrophin- 55.7 7 0.00015 48.7 2.1 29 627-660 578-606 (982)
136 PF15236 CCDC66: Coiled-coil d 54.9 1.1E+02 0.0023 31.0 9.9 30 627-656 69-98 (157)
137 KOG1363 Predicted regulator of 54.8 45 0.00098 39.0 8.4 10 673-682 355-364 (460)
138 PF06785 UPF0242: Uncharacteri 54.3 70 0.0015 35.8 9.2 65 631-698 130-194 (401)
139 PRK13454 F0F1 ATP synthase sub 54.2 1E+02 0.0022 31.4 10.1 12 608-619 57-68 (181)
140 KOG0982 Centrosomal protein Nu 53.7 67 0.0014 37.1 9.1 50 639-688 247-300 (502)
141 KOG2891 Surface glycoprotein [ 53.5 55 0.0012 35.7 8.1 8 643-650 332-339 (445)
142 PRK08476 F0F1 ATP synthase sub 53.3 2E+02 0.0043 28.1 11.5 18 669-686 97-114 (141)
143 CHL00019 atpF ATP synthase CF0 53.2 1.9E+02 0.004 29.4 11.7 15 605-619 47-61 (184)
144 PRK00247 putative inner membra 53.1 66 0.0014 37.4 9.3 15 360-374 80-94 (429)
145 KOG2357 Uncharacterized conser 52.4 36 0.00079 39.0 6.8 20 619-638 361-380 (440)
146 cd05506 Bromo_plant1 Bromodoma 52.3 1.7 3.6E-05 39.6 -3.0 55 38-97 31-85 (99)
147 KOG1420 Ca2+-activated K+ chan 51.5 9.2 0.0002 45.1 2.1 11 639-649 90-100 (1103)
148 KOG1150 Predicted molecular ch 50.2 2.4E+02 0.0051 29.8 11.7 8 623-630 149-156 (250)
149 cd05502 Bromo_tif1_like Bromod 50.2 2.3 4.9E-05 39.7 -2.5 55 38-97 32-89 (109)
150 PRK06568 F0F1 ATP synthase sub 49.7 1.6E+02 0.0034 29.7 10.2 25 628-652 56-80 (154)
151 PRK06231 F0F1 ATP synthase sub 49.2 2E+02 0.0042 30.1 11.3 12 608-619 74-85 (205)
152 PF05110 AF-4: AF-4 proto-onco 49.1 21 0.00045 46.3 4.9 10 108-117 46-55 (1191)
153 PF07946 DUF1682: Protein of u 48.9 74 0.0016 35.4 8.7 15 595-612 235-249 (321)
154 KOG0644 Uncharacterized conser 48.5 5.7 0.00012 48.6 -0.1 66 228-296 89-184 (1113)
155 PF06936 Selenoprotein_S: Sele 48.3 85 0.0018 32.6 8.3 43 647-689 78-124 (190)
156 PF07218 RAP1: Rhoptry-associa 47.4 2.6E+02 0.0055 33.7 12.6 27 397-423 36-62 (782)
157 cd05492 Bromo_ZMYND11 Bromodom 47.4 3.2 7E-05 39.1 -1.9 72 39-121 36-107 (109)
158 PF10252 PP28: Casein kinase s 47.1 1E+02 0.0022 28.0 7.4 37 624-660 21-58 (82)
159 KOG4364 Chromatin assembly fac 46.5 84 0.0018 38.1 8.8 17 621-637 289-305 (811)
160 cd05522 Bromo_Rsc1_2_II Bromod 46.3 2.3 5E-05 39.5 -3.1 55 38-97 36-90 (104)
161 PF12544 LAM_C: Lysine-2,3-ami 46.1 5.7 0.00012 38.3 -0.5 45 31-85 4-49 (127)
162 COG3064 TolA Membrane protein 46.0 74 0.0016 35.4 7.7 26 664-689 164-189 (387)
163 PRK09174 F0F1 ATP synthase sub 45.7 2.1E+02 0.0045 29.9 10.9 31 608-639 79-109 (204)
164 PRK13460 F0F1 ATP synthase sub 45.2 2.6E+02 0.0057 28.0 11.3 9 610-618 44-52 (173)
165 PRK00409 recombination and DNA 45.1 1.1E+02 0.0024 38.2 10.3 14 676-689 608-621 (782)
166 KOG3054 Uncharacterized conser 44.8 92 0.002 33.6 8.0 9 665-673 149-157 (299)
167 PRK14471 F0F1 ATP synthase sub 44.7 2.8E+02 0.0061 27.4 11.3 6 611-616 37-42 (164)
168 PRK05759 F0F1 ATP synthase sub 44.5 2.6E+02 0.0056 27.3 10.9 10 609-618 31-40 (156)
169 PF05262 Borrelia_P83: Borreli 44.0 91 0.002 36.8 8.7 14 741-754 370-383 (489)
170 TIGR01932 hflC HflC protein. H 43.8 2.1E+02 0.0046 31.7 11.2 11 591-601 203-213 (317)
171 KOG2129 Uncharacterized conser 43.6 1.3E+02 0.0027 34.8 9.3 81 627-708 256-338 (552)
172 PRK13454 F0F1 ATP synthase sub 43.4 2.6E+02 0.0056 28.5 11.0 16 671-686 134-149 (181)
173 KOG2130 Phosphatidylserine-spe 43.3 16 0.00036 40.4 2.4 21 258-278 155-175 (407)
174 KOG2133 Transcriptional corepr 43.3 15 0.00032 45.8 2.3 56 623-685 806-861 (1229)
175 cd04369 Bromodomain Bromodomai 43.1 2.8 6.1E-05 36.7 -2.9 52 37-93 30-81 (99)
176 PRK06231 F0F1 ATP synthase sub 43.1 2.9E+02 0.0062 28.8 11.4 11 605-615 83-93 (205)
177 PRK13453 F0F1 ATP synthase sub 42.3 3.1E+02 0.0068 27.6 11.3 9 610-618 46-54 (173)
178 TIGR03321 alt_F1F0_F0_B altern 42.0 2.5E+02 0.0055 29.9 11.1 7 610-616 33-39 (246)
179 PRK08476 F0F1 ATP synthase sub 41.0 3.5E+02 0.0076 26.4 11.2 9 610-618 35-43 (141)
180 PRK14472 F0F1 ATP synthase sub 40.5 3E+02 0.0065 27.7 10.9 10 609-618 45-54 (175)
181 PF00836 Stathmin: Stathmin fa 40.3 38 0.00081 33.5 4.1 39 647-685 47-85 (140)
182 PRK07352 F0F1 ATP synthase sub 40.2 3.5E+02 0.0077 27.1 11.3 12 608-619 45-56 (174)
183 PRK13455 F0F1 ATP synthase sub 39.9 3.1E+02 0.0067 27.8 10.9 11 609-619 54-64 (184)
184 PF06098 Radial_spoke_3: Radia 39.7 1.2E+02 0.0025 33.6 8.2 13 581-593 120-132 (291)
185 PRK14474 F0F1 ATP synthase sub 39.6 3.2E+02 0.0069 29.4 11.4 9 610-618 33-41 (250)
186 PF00769 ERM: Ezrin/radixin/mo 39.6 1.9E+02 0.0042 31.0 9.8 31 640-670 45-75 (246)
187 KOG1363 Predicted regulator of 38.7 81 0.0017 37.0 7.2 7 381-387 209-215 (460)
188 CHL00118 atpG ATP synthase CF0 38.1 4.1E+02 0.0088 26.2 11.5 9 610-618 50-58 (156)
189 PRK00247 putative inner membra 37.9 2.9E+02 0.0064 32.2 11.4 12 628-639 324-335 (429)
190 KOG0577 Serine/threonine prote 37.6 8.8E+02 0.019 30.0 20.1 33 93-126 51-83 (948)
191 KOG3654 Uncharacterized CH dom 37.4 1.2E+02 0.0027 35.6 8.1 9 698-706 457-465 (708)
192 TIGR03321 alt_F1F0_F0_B altern 37.3 2.2E+02 0.0047 30.4 9.7 10 606-615 41-50 (246)
193 PF06637 PV-1: PV-1 protein (P 37.2 2.6E+02 0.0057 32.0 10.4 38 607-654 292-334 (442)
194 PRK07352 F0F1 ATP synthase sub 36.8 4.5E+02 0.0097 26.4 11.9 11 605-615 54-64 (174)
195 PRK13460 F0F1 ATP synthase sub 36.5 4.2E+02 0.0092 26.6 11.2 10 606-615 52-61 (173)
196 PRK14475 F0F1 ATP synthase sub 36.4 4.5E+02 0.0098 26.2 11.5 28 608-636 36-63 (167)
197 PF14372 DUF4413: Domain of un 36.2 81 0.0018 29.0 5.5 50 259-308 4-53 (101)
198 KOG2656 DNA methyltransferase 36.1 88 0.0019 35.8 6.6 57 601-657 172-240 (445)
199 PRK02292 V-type ATP synthase s 35.8 2.6E+02 0.0057 28.2 9.7 6 643-648 28-33 (188)
200 PF06810 Phage_GP20: Phage min 35.6 2.5E+02 0.0055 28.0 9.3 44 611-654 36-81 (155)
201 COG4942 Membrane-bound metallo 35.6 2E+02 0.0043 33.4 9.5 11 364-374 61-71 (420)
202 COG3074 Uncharacterized protei 35.0 2.7E+02 0.0059 24.5 7.9 56 628-688 22-77 (79)
203 KOG2130 Phosphatidylserine-spe 34.7 27 0.00059 38.7 2.4 8 298-305 163-170 (407)
204 KOG0742 AAA+-type ATPase [Post 34.7 7.9E+02 0.017 29.0 13.7 29 591-619 73-109 (630)
205 PRK13428 F0F1 ATP synthase sub 34.5 3.5E+02 0.0076 31.6 11.5 10 609-618 28-37 (445)
206 TIGR01933 hflK HflK protein. H 34.2 4.2E+02 0.0092 28.1 11.4 6 596-601 150-155 (261)
207 PF12052 VGCC_beta4Aa_N: Volta 34.1 45 0.00097 26.2 2.8 16 675-690 24-39 (42)
208 PF05672 MAP7: MAP7 (E-MAP-115 34.0 5.4E+02 0.012 26.5 13.9 22 628-649 36-57 (171)
209 CHL00118 atpG ATP synthase CF0 33.3 4.8E+02 0.01 25.7 12.1 11 605-615 57-67 (156)
210 KOG3634 Troponin [Cytoskeleton 32.9 1.4E+02 0.0029 33.6 7.3 20 625-644 90-109 (361)
211 PRK01885 greB transcription el 32.6 94 0.002 31.1 5.7 66 629-698 12-80 (157)
212 PF09831 DUF2058: Uncharacteri 31.9 3.6E+02 0.0078 27.8 9.7 22 669-690 62-83 (177)
213 PRK01005 V-type ATP synthase s 31.9 3.7E+02 0.0079 28.3 10.1 11 680-690 77-87 (207)
214 PLN03188 kinesin-12 family pro 31.7 2E+02 0.0043 37.8 9.3 65 629-693 1167-1243(1320)
215 PF15346 ARGLU: Arginine and g 31.5 3.9E+02 0.0086 26.8 9.6 14 630-643 75-88 (149)
216 KOG2412 Nuclear-export-signal 30.7 2.2E+02 0.0048 34.0 8.9 16 673-688 260-275 (591)
217 PRK13461 F0F1 ATP synthase sub 30.1 5.4E+02 0.012 25.3 11.3 6 611-616 34-39 (159)
218 KOG2412 Nuclear-export-signal 29.9 1.3E+02 0.0029 35.7 7.0 9 642-650 219-227 (591)
219 PRK14474 F0F1 ATP synthase sub 29.4 5.7E+02 0.012 27.5 11.3 16 674-689 120-135 (250)
220 PF06991 Prp19_bind: Splicing 29.2 3.6E+02 0.0078 29.7 9.8 7 683-689 141-147 (276)
221 PF03154 Atrophin-1: Atrophin- 28.8 27 0.00059 43.7 1.4 19 121-139 96-114 (982)
222 TIGR01461 greB transcription e 28.6 1.2E+02 0.0026 30.3 5.7 63 629-695 10-75 (156)
223 PF15290 Syntaphilin: Golgi-lo 28.6 8.4E+02 0.018 27.0 13.4 8 632-639 90-97 (305)
224 PF06785 UPF0242: Uncharacteri 28.4 7.8E+02 0.017 28.0 12.0 40 594-643 62-101 (401)
225 PRK13453 F0F1 ATP synthase sub 28.0 6.3E+02 0.014 25.4 11.5 7 608-614 56-62 (173)
226 PF06548 Kinesin-related: Kine 27.4 3.3E+02 0.0072 31.9 9.4 62 629-690 397-470 (488)
227 PF06637 PV-1: PV-1 protein (P 27.0 5.5E+02 0.012 29.6 10.8 47 617-663 285-331 (442)
228 KOG1150 Predicted molecular ch 26.8 7.9E+02 0.017 26.1 11.8 33 648-680 162-196 (250)
229 PF09731 Mitofilin: Mitochondr 26.2 3.3E+02 0.0071 32.6 9.8 10 678-687 340-349 (582)
230 PHA03309 transcriptional regul 26.1 80 0.0017 39.2 4.4 6 74-79 1317-1322(2033)
231 PF10872 DUF2740: Protein of u 25.8 67 0.0014 25.2 2.5 15 112-126 30-44 (48)
232 cd03405 Band_7_HflC Band_7_Hfl 25.8 6.7E+02 0.015 26.0 11.0 9 593-601 150-158 (242)
233 KOG2357 Uncharacterized conser 25.3 3.4E+02 0.0074 31.5 8.9 11 394-404 207-217 (440)
234 PF01237 Oxysterol_BP: Oxyster 24.5 1.2E+02 0.0027 33.9 5.5 22 624-645 297-318 (354)
235 PRK09174 F0F1 ATP synthase sub 24.3 8.3E+02 0.018 25.5 11.3 10 605-614 88-97 (204)
236 PRK03963 V-type ATP synthase s 24.1 5E+02 0.011 26.4 9.4 21 632-652 33-53 (198)
237 TIGR02606 antidote_CC2985 puta 23.9 97 0.0021 26.8 3.5 26 250-275 12-37 (69)
238 PRK05892 nucleoside diphosphat 23.6 2.3E+02 0.0051 28.4 6.7 39 627-666 14-52 (158)
239 PF06098 Radial_spoke_3: Radia 23.6 5.8E+02 0.013 28.3 10.2 18 627-644 156-173 (291)
240 PRK09173 F0F1 ATP synthase sub 23.4 5.6E+02 0.012 25.2 9.3 9 610-618 30-38 (159)
241 PRK13428 F0F1 ATP synthase sub 23.3 4.9E+02 0.011 30.4 10.2 10 698-707 149-158 (445)
242 PRK14473 F0F1 ATP synthase sub 23.2 7.3E+02 0.016 24.5 11.4 6 611-616 37-42 (164)
243 PRK14475 F0F1 ATP synthase sub 23.0 5.6E+02 0.012 25.5 9.4 10 675-684 117-126 (167)
244 CHL00019 atpF ATP synthase CF0 22.7 8.1E+02 0.018 24.8 12.0 11 605-615 59-69 (184)
245 PF00769 ERM: Ezrin/radixin/mo 22.5 2.7E+02 0.0059 29.9 7.4 17 641-657 74-90 (246)
246 PRK10930 FtsH protease regulat 22.4 4.8E+02 0.01 30.4 9.7 67 607-689 262-333 (419)
247 PRK09173 F0F1 ATP synthase sub 22.3 7.5E+02 0.016 24.3 11.8 10 606-615 38-47 (159)
248 KOG4403 Cell surface glycoprot 22.3 3E+02 0.0065 32.1 7.7 65 633-701 265-335 (575)
249 PF15346 ARGLU: Arginine and g 22.3 5.4E+02 0.012 25.9 8.7 7 681-687 117-123 (149)
250 cd03407 Band_7_4 A subgroup of 22.1 5.4E+02 0.012 27.5 9.6 7 595-601 143-149 (262)
251 KOG0718 Molecular chaperone (D 21.7 2.1E+02 0.0046 33.7 6.5 17 102-118 95-111 (546)
252 KOG1103 Predicted coiled-coil 21.1 3.5E+02 0.0076 30.7 7.8 45 576-620 480-525 (561)
253 PF11221 Med21: Subunit 21 of 21.0 2.6E+02 0.0057 27.4 6.3 53 605-668 73-130 (144)
254 PF02731 SKIP_SNW: SKIP/SNW do 20.9 2.4E+02 0.0053 28.5 6.1 13 672-684 143-155 (158)
255 PRK06669 fliH flagellar assemb 20.9 1.1E+03 0.023 25.5 11.8 46 603-653 76-121 (281)
256 PRK05759 F0F1 ATP synthase sub 20.9 7.7E+02 0.017 23.9 11.3 9 607-615 41-49 (156)
257 PRK12585 putative monovalent c 20.8 1.7E+02 0.0036 30.6 5.0 15 626-640 128-142 (197)
258 PRK12472 hypothetical protein; 20.6 9.9E+02 0.022 28.5 11.6 23 649-671 267-289 (508)
259 COG2118 DNA-binding protein [G 20.5 3.4E+02 0.0075 26.1 6.6 16 679-694 71-86 (116)
260 COG1422 Predicted membrane pro 20.3 3.6E+02 0.0078 28.3 7.3 22 671-692 102-123 (201)
261 PF15437 PGBA_C: Plasminogen-b 20.1 4.8E+02 0.01 23.7 7.0 46 635-686 38-83 (86)
262 PF02841 GBP_C: Guanylate-bind 20.1 4.8E+02 0.01 28.5 8.8 36 625-660 212-247 (297)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=1.5e-43 Score=413.58 Aligned_cols=554 Identities=27% Similarity=0.353 Sum_probs=347.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCC--------------------------------Cc
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNID--------------------------------GY 86 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~--------------------------------~~ 86 (778)
+|+|+..|.++|+.+ ++-.||-++||.+...|...+..+.-|.. +-
T Consensus 24 ~~~~~~~~~~~~d~~--~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIG--TIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred chhhhcccCCCCCch--hhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCC
Confidence 688999999999888 89999999999888888776655433311 11
Q ss_pred cccCCccceeecCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCC-CccccccCCCCCCCCccCCCCCccccC
Q 004033 87 DNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSP-SSDIRSCNDGQKRPLLESVGGPSVVLA 165 (778)
Q Consensus 87 ~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLeqvR~l~kki~~~~~~~~lsp-~~~~~s~~~~~~~~~~~s~~~~s~s~~ 165 (778)
..++++..++++.+++..++++|+.||..+|++||.+.++++.....-++++ +...+. ........ ........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~d~~~~ 176 (640)
T KOG1474|consen 102 SSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQP--FKSKNGVK---KVADTCVK 176 (640)
T ss_pred cccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccc--cccccchh---hhhccccc
Confidence 2245677788999999999999999999999999999999972222222333 111100 00000000 00000000
Q ss_pred C---CCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCC
Q 004033 166 P---KGKKRAPNGRNGPQTKKGNSGRLEPK-----KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIP 237 (778)
Q Consensus 166 ~---~~kKr~~~~~~~~~~kr~~~~r~~p~-----k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~P 237 (778)
. ...+-..++....+...+. ....+. .........+..+++.|..||..||.|+++|+|+.|||++.+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLp 255 (640)
T KOG1474|consen 177 SYKSKSEREPSPGQKREGTVAPN-SSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLP 255 (640)
T ss_pred cccccCcCCCCccccccccccCc-cccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCc
Confidence 0 0000000110000000000 000000 122334456789999999999999999999999999999999999
Q ss_pred CcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC-
Q 004033 238 DYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDM- 316 (778)
Q Consensus 238 DYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k~p~~~~~- 316 (778)
|||+||++||||+|||+||.+|.|.++.+|++||||||+|||+||++|++||.||..|+++|+.+|+.+..++......
T Consensus 256 DY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~ 335 (640)
T KOG1474|consen 256 DYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAV 335 (640)
T ss_pred chhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976554321000
Q ss_pred CCCCCCcchhhHHhhhcCCCCccccCCCCccccccccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhccC--CCC
Q 004033 317 TAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSA--GET 394 (778)
Q Consensus 317 ~~~p~~~~~~~e~~~~~~~Pp~kkrK~sp~~~~~~~e~~kr~mT~eEK~kLs~~I~~Lp~e~l~~Iv~IIk~~~~--~~~ 394 (778)
........ .......+....++..-.......++....|+.+++..+...+..++.+...+++..++.... ...
T Consensus 336 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 411 (640)
T KOG1474|consen 336 KEEAGMAS----SDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRK 411 (640)
T ss_pred cccccccc----ccccccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCcccc
Confidence 00000000 000000000111111111111223334578999999999999999999999999999988773 334
Q ss_pred CCCcEEEecCCCCHHHHHHHHHH--HHHHHHHhhhccCCCCCCccccccccCCCCCccccccCCCCCccccccccCCCCC
Q 004033 395 GEDELEIDIDALSDDTLFALRKL--LDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPP 472 (778)
Q Consensus 395 ~~dEIEIDId~L~~~TL~eL~~~--V~~~l~ek~K~~~k~e~~e~e~~n~s~~~nSs~~~~K~~e~~eE~vdi~gg~~~p 472 (778)
...++++++..+... |.+... .......+.+..+..+. ..+.+..+++ .+|
T Consensus 412 ~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~----~~p 464 (640)
T KOG1474|consen 412 IEEELESDKRPLVTG--KLIKEKNKKEKAANENKRDMTAPEK---------------------AKLKELLQNL----LPP 464 (640)
T ss_pred ccccccccccccchh--hhhhhhhcccccccccccccccccc---------------------ccchhhccCC----CCC
Confidence 445666666655544 333221 11111111111111110 0111111111 111
Q ss_pred CCCCCcchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhhhccCCCcccccCCCCCCC
Q 004033 473 VTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPDI 552 (778)
Q Consensus 473 ~ss~~Pv~iekd~~~~~s~sSSsSSSSSdS~SSSSdSdS~sSs~s~s~a~~~~~~~~~~~~~~~s~~~~d~~~~~~~~~~ 552 (778)
-....++.+.+- . .
T Consensus 465 ~~l~~~~~~~~~-~----------------------------------~------------------------------- 478 (640)
T KOG1474|consen 465 NKLESIVEILKP-E----------------------------------K------------------------------- 478 (640)
T ss_pred ccccCcccccch-h----------------------------------h-------------------------------
Confidence 111112222200 0 0
Q ss_pred CCCCCCccccccccCCCCCCccccCCCCCCCCCCCCCCCCchHHHHHHHhhchhhHHHHHHHH-HHhhh-cCCCChHHHH
Q 004033 553 GNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKARE-KALEK-GEKRDPEKLR 630 (778)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~sp~k~~raa~lk~rfadtilka~~-k~l~~-g~~~dp~kl~ 630 (778)
....|.+-..........++ .--+..|...+...++.+++..+...|+..+.++++ +.+-+ ....+|+++.
T Consensus 479 ---~~~~l~~~~~~~~~~~~~vd----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 551 (640)
T KOG1474|consen 479 ---RQLDLSQNDDEIELDLDSVD----GSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLS 551 (640)
T ss_pred ---hcccccccccchhhcccccc----cccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchh
Confidence 00000000000000000100 000111124566788999999999999999999999 66665 6667999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004033 631 IEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDLEM 705 (778)
Q Consensus 631 ~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~~~~~le~ 705 (778)
...++.+.+...++++.++....++.+++.+.+.+.. .++.++.+|+.+++++..|+.++++..+..+..+++.
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~ 625 (640)
T KOG1474|consen 552 RSISEEKLREKSEKSSSEASSSSSEDGENKAASSGSL-SPSSSSLERESNNSAEANGSSSSESSSSSSSSSSEEG 625 (640)
T ss_pred hhhhHHhhhhhhHhhhhhhhhhhHHHHhhcccccccc-CccccccccchhHHHHhcccCccccccccccchhhcc
Confidence 9999999999999999999999999998876644333 4666789999999999999999999999998887775
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.3e-27 Score=219.53 Aligned_cols=106 Identities=38% Similarity=0.629 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..|.+.|..||..|++|+.+++|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 679999999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 283 PP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 283 ~~-gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
++ ++.||.+|..|++.|+++|+.|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999987654
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=214.30 Aligned_cols=104 Identities=37% Similarity=0.580 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~-~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
.++++.|..|++.|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|+++|.||.+|..|+++|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=213.78 Aligned_cols=102 Identities=40% Similarity=0.676 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 004033 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (778)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (778)
++.-.+..||..|++|+.+|+|..|||+.+.++||||+||++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34444578899999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 004033 284 PQNDVHIMADTLRKYFEVRWKA 305 (778)
Q Consensus 284 ~gS~V~~~A~~L~~~Fe~~~k~ 305 (778)
+||.||.+|..|++.|+++++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998865
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.1e-26 Score=207.32 Aligned_cols=95 Identities=32% Similarity=0.557 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 004033 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (778)
++.|.+||+.|++|+.+|+|..||++. .+||||+||++||||+||++||++|.|.|+.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004033 286 NDVHIMADTLRKYFEVR 302 (778)
Q Consensus 286 S~V~~~A~~L~~~Fe~~ 302 (778)
|.||.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.4e-26 Score=205.16 Aligned_cols=99 Identities=66% Similarity=1.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
+++.|..||+.|++|+.+++|..||++....+|+||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004033 285 QNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 285 gS~V~~~A~~L~~~Fe~~~ 303 (778)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.4e-25 Score=203.80 Aligned_cols=96 Identities=41% Similarity=0.766 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 004033 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (778)
+..|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|+|+.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004033 286 NDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~ 303 (778)
+.+|.+|..|++.|+++|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.2e-25 Score=207.45 Aligned_cols=102 Identities=36% Similarity=0.711 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
...+..|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.|+.+|..||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 667899999999999999999999999965 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
+++|.+|.+|..|+++|++.++.+
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-25 Score=203.95 Aligned_cols=98 Identities=50% Similarity=0.901 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
++.|..||+.|+++ +.+++|..||++....+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 889999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=202.74 Aligned_cols=100 Identities=33% Similarity=0.468 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..|.+.|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRWK 304 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k 304 (778)
++++.||.+|..|++.|...+.
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999977654
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.8e-25 Score=202.48 Aligned_cols=98 Identities=47% Similarity=0.898 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
++.|..||..|+++ +.+++|..|||+.+..+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 58999999999995 579999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.5e-25 Score=201.88 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
+..+.+.|.+||..|++++.+++|..||++.+..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~ 302 (778)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=201.23 Aligned_cols=101 Identities=37% Similarity=0.695 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhhhhc
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFSNAM 279 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~---~~Y~s~~eF~~DvrLIf~NA~ 279 (778)
...++.|.+||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|.++.+|.+||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999997 699999999999999999999998 699999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 280 TYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 280 ~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
.||+++|.++.+|..|++.|++.|+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=198.42 Aligned_cols=97 Identities=29% Similarity=0.397 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
.++.|+.||..|++|+.+++|..+ |. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004033 285 QNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 285 gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=201.94 Aligned_cols=102 Identities=29% Similarity=0.453 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~-~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
.++...|..||..|++| +.+++|..||++. .+||||++|++||||+||++||++|.|+++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999 8999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQN-DVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 282 N~~gS-~V~~~A~~L~~~Fe~~~k~i 306 (778)
|++++ .++.+|..|++.|+..+..|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99876 67899999999999988765
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.3e-24 Score=196.89 Aligned_cols=99 Identities=38% Similarity=0.652 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
++.+|..||+.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999977 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 004033 285 QNDVHIMADTLRKYFEVRWKA 305 (778)
Q Consensus 285 gS~V~~~A~~L~~~Fe~~~k~ 305 (778)
++.+|.+|..|++.|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998765
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=196.64 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
.++...+..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356778888999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~ 302 (778)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=3.3e-24 Score=198.15 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
+.+.|..||+.|+++.. +++|..||+.. .+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999876 89999998854 89999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
++||++||.||.+|..|+++|++.++++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988753
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.7e-24 Score=192.43 Aligned_cols=92 Identities=35% Similarity=0.475 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
+.+.|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5688999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004033 285 QNDVHIMADTLRKY 298 (778)
Q Consensus 285 gS~V~~~A~~L~~~ 298 (778)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999654
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=1.8e-23 Score=194.85 Aligned_cols=102 Identities=34% Similarity=0.468 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
.++...|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++++|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 357788999999999999999999999977 799999999999999999999999999999999999999999999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHH
Q 004033 283 PP----QNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 283 ~~----gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
++ |+.||.+|..|++.|..++..+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99 5799999999999999887654
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.7e-23 Score=190.63 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
+...|..+|+.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004033 285 QNDVHIMADTLRKY 298 (778)
Q Consensus 285 gS~V~~~A~~L~~~ 298 (778)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.3e-23 Score=193.05 Aligned_cols=102 Identities=31% Similarity=0.516 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 004033 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (778)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS 286 (778)
.....|+..|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999977 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
.+|.+|..|.+.|+..+..+..++
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999887664
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.5e-23 Score=187.80 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcC------CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
+.+.|..|++.|+++ +.+++|..||+.. .+||||++|++||||+||++||+.|.|.|+.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999955 4589999998744 89999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
++||+++|.+|.+|..|++.|+.++
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998753
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7.8e-23 Score=188.43 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcC------CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 004033 206 MKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (778)
Q Consensus 206 ~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (778)
+++|..|++.|..+ +.+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999886 4579999998754 899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 004033 280 TYNPPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 280 ~YN~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
+||++||.||.+|..|+++|.+..
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2e-22 Score=188.13 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
..+.|..|++.|++++ .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999764 4578999766 6699999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
+.||++||.+|.+|..|+++|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=6e-22 Score=188.72 Aligned_cols=105 Identities=28% Similarity=0.403 Sum_probs=98.7
Q ss_pred CCchHHHHHHHHHHHHHHH---cCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 199 SSSNAMLMKQCENLLTRLM---SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 199 ~~~~~~~~k~c~~IL~~L~---~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
......+...|..++.+|+ +++.+++|..||++.. .+|+||++|++||||+||++||.++.|+++.+|..||+|||
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLIL 97 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3456888999999999999 8999999999999764 79999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 004033 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWK 304 (778)
Q Consensus 276 ~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k 304 (778)
.||++||+++|.+|.+|..|++.|...++
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988764
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=6.5e-22 Score=181.06 Aligned_cols=102 Identities=44% Similarity=0.724 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999966 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKA 305 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~ 305 (778)
|++++.+|.+|..|...|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=3.6e-22 Score=183.44 Aligned_cols=94 Identities=34% Similarity=0.517 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 004033 206 MKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (778)
Q Consensus 206 ~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (778)
.+.|..|++.|+++. .+++|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999874 4699999877 55999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 004033 280 TYNPPQNDVHIMADTLRKYFEV 301 (778)
Q Consensus 280 ~YN~~gS~V~~~A~~L~~~Fe~ 301 (778)
+||++||.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=7e-22 Score=182.41 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
+.+.|..|++.|..++ .+++|.++++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4566777777777753 4799999866 5699999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~ 302 (778)
+.||++||.||.+|..|+++|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=5.6e-22 Score=182.19 Aligned_cols=91 Identities=27% Similarity=0.453 Sum_probs=82.1
Q ss_pred HHHHHHHHcC------CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 004033 210 ENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (778)
Q Consensus 210 ~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (778)
..|++.|+++ ..+++|.+||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~~--~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPSK--RKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCCc--ccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4455555554 468999999874 48999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 004033 284 PQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 284 ~gS~V~~~A~~L~~~Fe~~ 302 (778)
+||.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=7.3e-22 Score=181.45 Aligned_cols=94 Identities=27% Similarity=0.417 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcC------CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 207 k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
++|..|++.|.++ ..+.+|..+|+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677666664 5688999988754 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~ 302 (778)
||++||.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999863
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.2e-20 Score=173.62 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHc------CCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 207 KQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 207 k~c~~IL~~L~~------~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
.++..|++.|.+ ++.+++|..+|+.. .+||||++|++||||+||++||..+.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 445555565555 46789999998855 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQNDVHIMADTLRKYFEVR 302 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~ 302 (778)
||++|+.+|.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=1.3e-20 Score=165.22 Aligned_cols=84 Identities=44% Similarity=0.799 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 004033 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (778)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V 288 (778)
|..||+.|++|+.+++|..||++. .+|+|+.+|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004033 289 HIMADT 294 (778)
Q Consensus 289 ~~~A~~ 294 (778)
|.+|..
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=1.5e-20 Score=167.01 Aligned_cols=96 Identities=45% Similarity=0.624 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 004033 206 MKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (778)
Q Consensus 206 ~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (778)
...|..|+..|+.+ +.+++|..||++. .+|+||.+|++||||++|++||.+|.|.++.+|.+||++||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999 9999999999974 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004033 284 PQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 284 ~gS~V~~~A~~L~~~Fe~~~ 303 (778)
+++.+|.+|..|...|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.8e-20 Score=171.83 Aligned_cols=95 Identities=26% Similarity=0.372 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
+.++|..|++.|++.+. +.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|..||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 46789999999998744 568887555 55899999999999999999999998 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
++||++||.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=1.3e-19 Score=167.94 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=86.7
Q ss_pred HHHHHHHHc-CCCCccccCCCC---ccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 004033 210 ENLLTRLMS-HQFGWVFNTPVD---VMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 210 ~~IL~~L~~-~~~s~~F~~PVd---p~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (778)
.-++..+.+ .+..++|..||. +.+.++|+||.+|++||||+||++||++|.|+++++|.+||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344555555 466799999997 4444699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004033 286 NDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888887764
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=2.6e-17 Score=152.51 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 004033 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 204 ~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (778)
.+++.+..|+..+++|. .+.+|.+.+. ..|+||.+|+.||||++|++||++|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 46788899999999985 3678888433 4688899999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|++||.+||.||.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887764
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=9e-17 Score=178.31 Aligned_cols=105 Identities=30% Similarity=0.463 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHcC------CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 203 AMLMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
..+.+.|..|+..+... ..+++|..+|+ +..+|+||.||+.||||++|++||..+.|.++.+|..|+.|||+
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455555555555443 46788888666 77999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
||.+||.+++.||.+|..|++.|..++..+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999877543
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.65 E-value=9.1e-17 Score=199.80 Aligned_cols=95 Identities=40% Similarity=0.850 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 004033 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (778)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V 288 (778)
|..||..|+.|..+|||++||++. .+||||+||++||||.||+.|+..|.|.++.+|..||.|||.||.+||.. |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 999999999999999999999977 99999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004033 289 HIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 289 ~~~A~~L~~~Fe~~~k~i 306 (778)
+.....|.++|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988763
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=4.9e-13 Score=155.79 Aligned_cols=101 Identities=35% Similarity=0.625 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 004033 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (778)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (778)
.+......||..|.+|..+|||.+||+.. ++||||.+|++||||.||+.+|..+.|.....|++|+..||.||+.||.
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45567789999999999999999999966 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 004033 284 PQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 284 ~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
.++..|..|..|...|...++..
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998777654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.33 E-value=8.1e-13 Score=123.84 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHhhh
Q 004033 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSG-------QYSDPLAFAADVRLTFS 276 (778)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~-------~Y~s~~eF~~DvrLIf~ 276 (778)
+....|..+|..++.|+.+|+|..||++.+..+||||++||+||||+||+++|..+ .|..-..+.+++..+|.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45678888888888889999999999998889999999999999999999999997 44444566777778888
Q ss_pred hhcccCCC
Q 004033 277 NAMTYNPP 284 (778)
Q Consensus 277 NA~~YN~~ 284 (778)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 88777764
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.03 E-value=2.9e-10 Score=137.84 Aligned_cols=103 Identities=31% Similarity=0.437 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
.....+.+..+|..|...+...+|..|||+. ++|||++||++||||.|++.++.++.|.++++|..|+.||..||+.|
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 3567888999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|..+...|..|..|++.....+...
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhc
Confidence 9999999999999999877666544
No 43
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.90 E-value=1.7e-09 Score=128.38 Aligned_cols=100 Identities=28% Similarity=0.394 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 207 KQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 207 k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
+.|..|+....+|. .+..|... |++..+||||.||++||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77888888888664 46788874 55779999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004033 281 YNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~~k~i~~ 308 (778)
||..||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888764
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.84 E-value=3.8e-09 Score=98.90 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 004033 245 HPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 245 ~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (778)
.||||+||++||.+|.|.++.+|.+||+|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999863
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.73 E-value=9.2e-09 Score=124.67 Aligned_cols=94 Identities=28% Similarity=0.489 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHH
Q 004033 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (778)
Q Consensus 210 ~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~ 289 (778)
..|+.+++.-+.+|+|++||+.. .+|+||.+|++||||.||.+++..++|.+..+|.+||++|+.||..||+..+...
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 34555555667899999999976 7999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 004033 290 IMADTLRKYFEVRWKA 305 (778)
Q Consensus 290 ~~A~~L~~~Fe~~~k~ 305 (778)
..|..+-.+....+.+
T Consensus 1466 ~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766665554443
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.73 E-value=1.6e-08 Score=116.95 Aligned_cols=99 Identities=27% Similarity=0.404 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
.....++..||..+..+. ....|.+. |.+...|+||.+|..||.|..|++|+..+.|.+++.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 556677788888888774 35678774 4466999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHH
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRW 303 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~ 303 (778)
||+.||.+++.+|.++..|+..|....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.70 E-value=2.4e-08 Score=121.18 Aligned_cols=102 Identities=26% Similarity=0.377 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 004033 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (778)
.-....|++++...++..+|..||+.. .++|||.||+.||||.|+|+.+....|.+-++|..|+.|||+|..+||++.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 445678899999999999999999965 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 286 NDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
+.+...+..+....-..|..-+.+
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk 1364 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDK 1364 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHH
Confidence 999999988888777777655443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.53 E-value=2.4e-08 Score=118.33 Aligned_cols=91 Identities=34% Similarity=0.658 Sum_probs=85.3
Q ss_pred HHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHH
Q 004033 215 RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADT 294 (778)
Q Consensus 215 ~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~ 294 (778)
.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||++++.++.|.+..+..+|+..+|.||..||.++..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004033 295 LRKYFEVRWKA 305 (778)
Q Consensus 295 L~~~Fe~~~k~ 305 (778)
++..|-.....
T Consensus 83 ~~~~~~~~~~~ 93 (640)
T KOG1474|consen 83 LEKLFPKKLRS 93 (640)
T ss_pred chhhccccccc
Confidence 99998655443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.41 E-value=1.8e-07 Score=110.12 Aligned_cols=75 Identities=31% Similarity=0.493 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..+...|. .+.++|+|.++|+.. ..|+||+||+.||||.|+.+|+..+.|.+.++|..|+.+||.||.+||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 44555555 489999999999966 899999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004033 283 PPQN 286 (778)
Q Consensus 283 ~~gS 286 (778)
.+-+
T Consensus 363 ~ee~ 366 (720)
T KOG1472|consen 363 SEES 366 (720)
T ss_pred cccc
Confidence 8644
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.90 E-value=2.6e-05 Score=85.55 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHH
Q 004033 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIM 291 (778)
Q Consensus 212 IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~ 291 (778)
...+|........|+.|+-.. ..|.|..+|++|+|++|++.|..++.|.| .+|..|+.||+.||++||.+...+|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 344555556778888887655 89999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 004033 292 ADTLRK 297 (778)
Q Consensus 292 A~~L~~ 297 (778)
|..+..
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 987766
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.88 E-value=2.4e-06 Score=93.49 Aligned_cols=95 Identities=25% Similarity=0.213 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 004033 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (778)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS 286 (778)
.....++.+|-+...-..|.-||.+. -.|+|.+||+.|||+.|++.|++.++|.++.+|..|.++|..||..||...+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 34456667777777777888888766 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004033 287 DVHIMADTLRKYFEVRW 303 (778)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~ 303 (778)
.++..|..|..+-...+
T Consensus 100 v~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGMT 116 (418)
T ss_pred cccccccccchhhcchh
Confidence 99999999877654443
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.68 E-value=7.5e-06 Score=91.53 Aligned_cols=191 Identities=23% Similarity=0.332 Sum_probs=135.7
Q ss_pred CCCCC-CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHH
Q 004033 34 HSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELK 112 (778)
Q Consensus 34 ~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~R 112 (778)
+++.. .||||.+|..||+-. ++-..+-+.-|.+-..=..+. .|.+++|.+||-|.-.++ +
T Consensus 172 ~p~k~~~PdYy~iIk~Pm~L~--~i~kkl~~~~Y~s~eef~~D~---~lM~~N~~~yN~~~s~v~--------------~ 232 (371)
T COG5076 172 LPSKREYPDYYEIIKSPMDLL--TIQKKLKNGRYKSFEEFVSDL---NLMFDNCKLYNGPDSSVY--------------V 232 (371)
T ss_pred CCccccCCChheeecchhhHH--HHHHHHHhhhhhhHHHHHHHH---HHHHHhhhhccCCCcchh--------------h
Confidence 33444 699999999999776 666666666666655544333 444566999998877666 5
Q ss_pred HHHHHHHHHHHHHHhhhcccCcccCCCccccccCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004033 113 LKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPK 192 (778)
Q Consensus 113 l~~eLeqvR~l~kki~~~~~~~~lsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~~~~kr~~~~r~~p~ 192 (778)
-...|+ ..+.+.|..++.... . .. -. +++ ..+..
T Consensus 233 ~a~~l~--~~~~~~i~~~~~~~~-------~-----------------~~-----~~----~~~----~~~~~------- 266 (371)
T COG5076 233 DAKELE--KYFLKLIEEIPEEML-------E-----------------LS-----IK----PGR----EEREE------- 266 (371)
T ss_pred hhHHHH--HHHHHHHHhccccch-------h-----------------hc-----cC----ccc----ccccc-------
Confidence 555555 455566654443210 0 00 00 000 00000
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHH
Q 004033 193 KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVR 272 (778)
Q Consensus 193 k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~Dvr 272 (778)
+-..++.....+...|+|..++... ..|+|+++|..+|++.|.+.++..+.|....+|..|..
T Consensus 267 ---------------~~~~~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (371)
T COG5076 267 ---------------RESVLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAK 329 (371)
T ss_pred ---------------chhhcccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccc
Confidence 1123333446778899999998855 89999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 273 LTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 273 LIf~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
++|+||..||.....++..+..+..+|......+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 330 LFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 9999999999999999999999998887765543
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.012 Score=69.56 Aligned_cols=47 Identities=34% Similarity=0.423 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 004033 643 EKARLQAEAKAAEEARRKAE----AEAAAEA-KRKRELEREAARQALQMMEK 689 (778)
Q Consensus 643 ek~rl~a~~~aae~a~r~~e----~~~~~~~-~~~re~ere~ar~al~~mek 689 (778)
|++|.++|-|+..+..++.| -|++.|. |+|+-.+|||||++|.+|-+
T Consensus 359 ererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 359 ERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665543333 2333333 33334457899999877643
No 54
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=95.82 E-value=0.41 Score=50.06 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=5.4
Q ss_pred hccccccC
Q 004033 745 LGLYMKMD 752 (778)
Q Consensus 745 lgl~~k~d 752 (778)
|=||+|.|
T Consensus 206 ~pF~~k~~ 213 (216)
T PF11600_consen 206 LPFFVKDD 213 (216)
T ss_pred cCceecCC
Confidence 55777765
No 55
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.23 E-value=0.031 Score=54.01 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 246 PMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 246 PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|.||.-|++|+..|.|+++.+|.+||-.|+.-++.-.+....+-..-..+..+|.+.+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8899999999999999999999999999998777665544444444444455564444443
No 56
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.17 E-value=0.35 Score=60.81 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHH
Q 004033 284 PQNDVHIMADTLRKYF 299 (778)
Q Consensus 284 ~gS~V~~~A~~L~~~F 299 (778)
.-++||.++..|-.++
T Consensus 222 ~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 222 DKSDMWALGCIIYELC 237 (1021)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4578888888775544
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=0.23 Score=59.29 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004033 665 AAAEAKRKRELEREAARQA 683 (778)
Q Consensus 665 ~~~~~~~~re~ere~ar~a 683 (778)
|.+|..++|.+|=|+||.+
T Consensus 401 ar~ElEkqRqlewErar~q 419 (1118)
T KOG1029|consen 401 AREELEKQRQLEWERARRQ 419 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666777776766644
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=93.53 E-value=0.19 Score=59.29 Aligned_cols=61 Identities=31% Similarity=0.316 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHH
Q 004033 643 EKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDLE 704 (778)
Q Consensus 643 ek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~~~~~le 704 (778)
.|.||++|-|+.++|++++||..+ ..+.+|--.++|+-.|-|+|+....-...+-|..-|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (567)
T PLN03086 23 AKLKLERERKAKEEAAKQREAIEA-AQRSRRLDAIEAQIKADQQMQESLQAGRGIVFSRIFE 83 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEee
Confidence 346778888998888887775333 2233333345566667788888776666666655444
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.34 E-value=10 Score=46.43 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=25.2
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHhhhc---CCCChHHHHHHHHHHHH
Q 004033 595 KLYRAALLRNRFADTILKAREKALEKG---EKRDPEKLRIEREELER 638 (778)
Q Consensus 595 k~~raa~lk~rfadtilka~~k~l~~g---~~~dp~kl~~e~e~le~ 638 (778)
|.||+-|=-.|-.+.=|+-|---|..+ -|.+-.-||+|-|+|+.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 567777766677777777774444433 23344445555555554
No 60
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.71 E-value=1.6 Score=55.25 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 004033 111 LKLKTDLEQVRVL 123 (778)
Q Consensus 111 ~Rl~~eLeqvR~l 123 (778)
.++..|+.-++.|
T Consensus 57 ~~~~~EI~IL~~L 69 (1021)
T PTZ00266 57 SQLVIEVNVMREL 69 (1021)
T ss_pred HHHHHHHHHHHHc
Confidence 3455565544433
No 61
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=90.90 E-value=7.5 Score=42.04 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=2.7
Q ss_pred cCCCCC
Q 004033 735 FQGSTN 740 (778)
Q Consensus 735 ~~~~~~ 740 (778)
|.|.-+
T Consensus 250 Lrgt~s 255 (264)
T PF13904_consen 250 LRGTYS 255 (264)
T ss_pred ccCcCC
Confidence 444433
No 62
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=89.81 E-value=0.049 Score=50.85 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+.+|.+||+.+ ++-.|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 36 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 90 (107)
T cd05497 36 NLPDYHKIIKTPMDLG--TIKKRLENNYYWSASECIQDFNTMFTN---CYIYNKPGDDVV 90 (107)
T ss_pred cCCcHHHHHcCcccHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999998886666666555 889998886666
No 63
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.06 E-value=2.3 Score=51.22 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 004033 406 LSDDTLFALRKLLDDYLLEK 425 (778)
Q Consensus 406 L~~~TL~eL~~~V~~~l~ek 425 (778)
-|++|+.+|-.-|+.||.--
T Consensus 771 sDPe~m~~lv~kVn~WLv~s 790 (1259)
T KOG0163|consen 771 SDPETMLELVAKVNKWLVRS 790 (1259)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 47788888888888886543
No 64
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.11 E-value=0.5 Score=57.16 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=51.6
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 004033 243 IKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEV 301 (778)
Q Consensus 243 Ik~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~~Fe~ 301 (778)
..-|..|..|+.+|+++.|++.+.|..||..|.+||.+|..-+.-+-..+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 45689999999999999999999999999999999999999888777777777666654
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=87.54 E-value=1.8 Score=52.07 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 004033 291 MADTLRKYFEVRWK 304 (778)
Q Consensus 291 ~A~~L~~~Fe~~~k 304 (778)
+-+.|+.+|++.+-
T Consensus 477 CNEKLQ~FFNerIL 490 (1259)
T KOG0163|consen 477 CNEKLQKFFNERIL 490 (1259)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666666543
No 66
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=86.91 E-value=2.1 Score=51.83 Aligned_cols=6 Identities=50% Similarity=0.767 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004033 641 REEKAR 646 (778)
Q Consensus 641 ~eek~r 646 (778)
+||++|
T Consensus 237 eEE~~r 242 (1064)
T KOG1144|consen 237 EEERLR 242 (1064)
T ss_pred HHHHHH
Confidence 333333
No 67
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=86.71 E-value=0.095 Score=48.62 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.. ++-.+|++..|.+.+.-..+-+.|.-| |-.||-++-.+.
T Consensus 36 ~pdYy~iIk~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (103)
T cd05518 36 YPDYYKIILEPIDLK--TIEHNIRNDKYATEEELMDDFKLMFRN---ARHYNEEGSQVY 89 (103)
T ss_pred CccHHHHcCCCcCHH--HHHHHHCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999887 899999999999999888888887766 888998876655
No 68
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=0.43 Score=59.72 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=56.2
Q ss_pred CccccCCCCccccC---CCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHhhhhhcccCCCC
Q 004033 222 GWVFNTPVDVMKLN---IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA--DVRLTFSNAMTYNPPQ 285 (778)
Q Consensus 222 s~~F~~PVdp~k~~---~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~--DvrLIf~NA~~YN~~g 285 (778)
...|..|+.+...- +++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56788887653222 4699999999999999999999999999999999 9999999999999964
No 69
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=84.69 E-value=5.9 Score=48.44 Aligned_cols=74 Identities=31% Similarity=0.438 Sum_probs=38.0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 004033 613 AREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELE---REAARQALQMMEK 689 (778)
Q Consensus 613 a~~k~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~e---re~ar~al~~mek 689 (778)
||.+.+. .-|.|.||++.++|.=+.++++.+.+ ++++||.-|-..|.+..+..|.++|.+ -+..+..+++|++
T Consensus 568 aRk~liE-~rKe~~E~~~~~re~Eea~~q~~e~~---~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~ 643 (988)
T KOG2072|consen 568 ARKSLIE-KRKEDLEKQNVEREAEEAQEQAKEQR---QAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQ 643 (988)
T ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 44678888877777666665444333 333344333332222222223334444 5666777777775
Q ss_pred h
Q 004033 690 T 690 (778)
Q Consensus 690 t 690 (778)
|
T Consensus 644 t 644 (988)
T KOG2072|consen 644 T 644 (988)
T ss_pred H
Confidence 5
No 70
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=84.38 E-value=0.17 Score=47.33 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+.+|..||+.. ++..+++++.|.+-+....+-+.|--| |..||-+.-.+.
T Consensus 35 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (108)
T cd05495 35 GIPDYFDIVKNPMDLS--TIRRKLDTGQYQDPWQYVDDVWLMFDN---AWLYNRKTSRVY 89 (108)
T ss_pred CCCcHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 899999999999988887777777666 888998765554
No 71
>PTZ00121 MAEBL; Provisional
Probab=83.14 E-value=8.5 Score=49.68 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.1
Q ss_pred HhhchhhHHHHHHHH
Q 004033 601 LLRNRFADTILKARE 615 (778)
Q Consensus 601 ~lk~rfadtilka~~ 615 (778)
..|.++|-.+--||.
T Consensus 1121 ~~r~e~arr~eeARr 1135 (2084)
T PTZ00121 1121 KKKAEDARKAEEARK 1135 (2084)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344455555544443
No 72
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=83.13 E-value=12 Score=37.49 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 609 TILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAA-EEARRKAEAEAAAEAKRKRELEREAARQALQMM 687 (778)
Q Consensus 609 tilka~~k~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aa-e~a~r~~e~~~~~~~~~~re~ere~ar~al~~m 687 (778)
.|+..|++.+.. +-..-++++.|-++++..-+++-+...+++++. .++|.+++++++++.+.-.+.-+..--+..++|
T Consensus 37 ~iLe~R~~~I~~-~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~ 115 (155)
T PRK06569 37 EIFNNRQTNIQD-NITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDI 115 (155)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666654443 223344555666666655555544444444332 233556666666666666666677777889999
Q ss_pred HhhccccccccchHHHHHhhc
Q 004033 688 EKTVDINENSRFMEDLEMLRI 708 (778)
Q Consensus 688 ekt~~~~~n~~~~~~le~l~~ 708 (778)
.+.++ +.-...-..|-+|..
T Consensus 116 ~~~~~-~~~~~~~~~~i~~~~ 135 (155)
T PRK06569 116 NLAAK-QFRTNKSEAIIKLAV 135 (155)
T ss_pred HHHHH-HHHHhHHHHHHHHHH
Confidence 99998 444444444545543
No 73
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=81.92 E-value=0.14 Score=47.14 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+.+|..||+.. ++..||++..|.+-+.-..+-+.|--| |..||-|.-.++
T Consensus 30 ~~pdY~~vIk~PmDL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05513 30 IAPGYSSIIKHPMDFS--TMKEKIKNNDYQSIEEFKDDFKLMCEN---AMKYNKPDTIYY 84 (98)
T ss_pred ccccHHHHHcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 899999999999999988888877666 889999987776
No 74
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=81.20 E-value=0.23 Score=46.19 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=46.2
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
..+|||+.+|.+||+-+ ++-.+++++.|.+-+.-..+-+.|--| |.+||-+.
T Consensus 28 ~~~pdY~~iIk~PMDL~--tI~~kL~~~~Y~s~~ef~~D~~Lif~N---~~~yN~~~ 79 (102)
T cd05501 28 YYIRDYCQGIKEPMWLN--KVKERLNERVYHTVEGFVRDMRLIFHN---HKLFYKDD 79 (102)
T ss_pred CCCCchHHHcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHcCCC
Confidence 46899999999999887 899999999999999998888888666 88999776
No 75
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=80.46 E-value=0.23 Score=46.01 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=45.8
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+..|..||+.. ++-.||++..|.+-+.-..+-..|--| |..||-|...++
T Consensus 32 ~~p~Y~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~v~ 86 (104)
T cd05507 32 IAPGYHSVVYRPMDLS--TIKKNIENGTIRSTAEFQRDVLLMFQN---AIMYNSSDHDVY 86 (104)
T ss_pred ccCCHHHHhCCCcCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999987 899999999999988886666666555 889998875555
No 76
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=80.03 E-value=0.44 Score=44.80 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
..|+|+..|..|++.. ++-.++.+..|.+.+....+-+.|--| |..||-+.-.+. ...+.|++.....|
T Consensus 29 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~~~ 97 (112)
T cd05511 29 KVPDYYKIIKRPMDLQ--TIRKKISKHKYQSREEFLEDIELIVDN---SVLYNGPDSVYT------KKAKEMLELAEELL 97 (112)
T ss_pred hcccHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999887 899999999999999888888887766 788997765544 45566777777766
Q ss_pred HHHHHHHHHh
Q 004033 118 EQVRVLQKKV 127 (778)
Q Consensus 118 eqvR~l~kki 127 (778)
+++..-.+-+
T Consensus 98 ~~~~~~~~~~ 107 (112)
T cd05511 98 AEREEKLTQL 107 (112)
T ss_pred HHhHHHHHHH
Confidence 6665544444
No 77
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.99 E-value=0.25 Score=45.28 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=46.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+..|..||+.. ++-.||++..|.+-+.-..+-+.|--| |..||-+.-.+.
T Consensus 30 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~~s~~~ 84 (101)
T cd05509 30 EAPDYYDVIKKPMDLS--TMEEKLENGYYVTLEEFVADLKLIFDN---CRLYNGPDTEYY 84 (101)
T ss_pred hcCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4899999999999887 899999999999999887777777666 888997765444
No 78
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=79.82 E-value=0.31 Score=45.96 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=47.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+.+|..|++.. ++..||++..|.+-..-..+-+.|.-| |..||-+.-.+.
T Consensus 37 ~~PdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~~~ 91 (113)
T cd05524 37 NEPEYYEVVSNPIDLL--KIQQKLKTEEYDDVDDLTADFELLINN---AKAYYKPDSPEH 91 (113)
T ss_pred cCCCHHHHhCCccCHH--HHHHHhCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 899999999999999988887777666 788998876555
No 79
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.27 E-value=0.21 Score=46.02 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=47.8
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+..|.+||+-. ++-.|++++.|.+-+.-..+-+.|--| |..||-+.-.++
T Consensus 31 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---a~~YN~~~s~i~ 85 (99)
T cd05508 31 QFPDYAQYVFKPMDLS--TLEKNVRKKAYGSTDAFLADAKWILHN---AIIYNGGDHKLT 85 (99)
T ss_pred hCCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999887 899999999999999998888887766 788998875555
No 80
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.16 E-value=0.3 Score=46.21 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=46.7
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|+|+.+|..||+.+ ++-.+|++..|.+.+.-..+-+.|--| |.+||-+.-.+.
T Consensus 41 ~~pdY~~vI~~PmDL~--tI~~kL~~~~Y~s~~~f~~Dv~LI~~N---a~~yN~~~s~i~ 95 (115)
T cd05504 41 EVPDYYDIIKKPMDLG--TIKEKLNMGEYKLAEEFLSDIQLVFSN---CFLYNPEHTSVY 95 (115)
T ss_pred ccccHHHHhcCcccHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999988887777776655 889998886666
No 81
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.00 E-value=0.36 Score=46.05 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=43.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~ 92 (778)
-+|||+.+|.+||+.. ++-.|+.+..|.+-+.-..+-+.|--| |..||.+
T Consensus 34 ~~pdY~~iIk~PmDL~--tIk~kL~~~~Y~~~~ef~~D~~lif~N---a~~yN~~ 83 (119)
T cd05496 34 KYPDYRDIIDTPMDLG--TVKETLFGGNYDDPMEFAKDVRLIFSN---SKSYTPN 83 (119)
T ss_pred hcCcHHHHhCCcccHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999887 899999999999988887777777666 8899974
No 82
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=78.52 E-value=0.24 Score=45.95 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+.+|..|++.. ++..+|++..|.+-+.-..+-+.|.-| |..||-+.-.+.
T Consensus 35 ~~PdYy~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05520 35 KYPDYYQEIKNPISLQ--QIRTKLKNGEYETLEELEADLNLMFEN---AKRYNVPNSRIY 89 (103)
T ss_pred cCCCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999999888777777666 888998875555
No 83
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=78.39 E-value=21 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004033 665 AAAEAKRKRELEREAARQ-ALQMMEK 689 (778)
Q Consensus 665 ~~~~~~~~re~ere~ar~-al~~mek 689 (778)
+.+++.++-+.+|..+-+ ++..-|.
T Consensus 341 rkee~~rk~deerkK~e~ke~ea~E~ 366 (811)
T KOG4364|consen 341 RKEEKSRKSDEERKKLESKEVEAQEL 366 (811)
T ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHH
Confidence 333444444444444433 6666664
No 84
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=76.68 E-value=0.32 Score=44.65 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=45.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+.+|-.||+.+ ++-.++++..|.|-+.-..+-..|--| |-.||-++-.+.
T Consensus 29 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 83 (97)
T cd05505 29 EAEDYKKVITNPMDLQ--TMQTKCSCGSYSSVQEFLDDMKLVFSN---AEKYYENGSYVL 83 (97)
T ss_pred hcccHHHHcCCcCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 899999999999998886666666555 888998875544
No 85
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=75.41 E-value=0.33 Score=44.99 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=46.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|+|+.+|..|++.. ++-.|+++..|.+-.....+-+.|.-| |-+||-++-.+.
T Consensus 35 ~~pdYy~vI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05517 35 LYPDYYAVIKEPIDLK--TIAQRIQSGYYKSIEDMEKDLDLMVKN---AKTFNEPGSQVY 89 (103)
T ss_pred CCCCHHHHcCCCcCHH--HHHHHHCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999988888777777666 788998875555
No 86
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.16 E-value=0.3 Score=44.88 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=48.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+.+|..||+.. ++-.||++..|.+-+.-..+-+.|--| |..||-|.-.++
T Consensus 30 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05512 30 EVPDYLDHIKQPMDFS--TMRKKLESQRYRTLEDFEADFNLIINN---CLAYNAKDTIFY 84 (98)
T ss_pred ccCCHHHHhcCCcCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5899999999999887 899999999999999888888888767 889998876666
No 87
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.12 E-value=0.4 Score=46.18 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=48.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+.+|..|++.. ++-.||.+.+|.+-++-..+-+.|..| |..||-+.-.+.
T Consensus 57 ~~p~Y~~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~Li~~N---a~~yN~~~s~i~ 111 (128)
T cd05529 57 WYPDYWNRVPVPMDLE--TIRSRLENRYYRSLEALRHDVRLILSN---AETFNEPNSEIA 111 (128)
T ss_pred cCCcHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999887 899999999999998888888888777 889998876666
No 88
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=74.26 E-value=0.19 Score=47.32 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=43.8
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
-+|||+.+|..||+-. ++-.|+++..|.+-+....+-+.|--| |-.||-+.
T Consensus 32 ~~pdY~~vI~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~ 82 (112)
T cd05528 32 EVPDYYEIIKQPMDLQ--TILQKLDTHQYLTAKDFLKDIDLIVTN---ALEYNPDR 82 (112)
T ss_pred ccCcHHHHHcCCCCHH--HHHHHHcCCCcCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999887 899999999999999887777777666 78899774
No 89
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=74.05 E-value=2.4 Score=50.61 Aligned_cols=13 Identities=38% Similarity=0.370 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHH
Q 004033 405 ALSDDTLFALRKL 417 (778)
Q Consensus 405 ~L~~~TL~eL~~~ 417 (778)
-|..-||+.|++.
T Consensus 1192 flthvtlrrlrdv 1204 (1463)
T PHA03308 1192 FLTHVTLRRLRDV 1204 (1463)
T ss_pred hhhhhhHHHHHHH
Confidence 4566778877764
No 90
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=73.72 E-value=0.42 Score=44.66 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
.+|+|+.+|.+|++.. ++-.+|.+ |.+...-..+-+.|--| |-.||-++-.+. +...+|
T Consensus 36 ~~pdYy~iI~~PmdL~--tI~~kl~~--Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~--------------~~A~~l 94 (106)
T cd05521 36 DYPDYYKIIKNPLSLN--TVKKRLPH--YTNAQEFVNDLAQIPWN---ARLYNTKGSVIY--------------KYALIL 94 (106)
T ss_pred cCccHHHHhcCCCCHH--HHHHHHHc--CCCHHHHHHHHHHHHHH---HHHHcCCCCHHH--------------HHHHHH
Confidence 6799999999999887 89999998 77777777777776555 788998876666 555666
Q ss_pred HHHHHHHHHh
Q 004033 118 EQVRVLQKKV 127 (778)
Q Consensus 118 eqvR~l~kki 127 (778)
+ +.+.++|
T Consensus 95 e--~~~~~~~ 102 (106)
T cd05521 95 E--KYINDVI 102 (106)
T ss_pred H--HHHHHhh
Confidence 6 5555555
No 91
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=73.64 E-value=11 Score=40.43 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=42.5
Q ss_pred HhhchhhHHHHHHHHH-Hhhh-----cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 601 LLRNRFADTILKAREK-ALEK-----GEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRE 674 (778)
Q Consensus 601 ~lk~rfadtilka~~k-~l~~-----g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re 674 (778)
+||+.|+.+..+.+.. .+.+ ..+.+-++++.+.+++-..-++|-++|.++|++.-++.++.-.....+++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444432 1111 222234566666777666667777777777776555544322122334444455
Q ss_pred HHHHHHHHH
Q 004033 675 LEREAARQA 683 (778)
Q Consensus 675 ~ere~ar~a 683 (778)
.-++.||++
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 555555544
No 92
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.45 E-value=22 Score=44.27 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 608 DTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEA 657 (778)
Q Consensus 608 dtilka~~k~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a 657 (778)
+.|-.|++. | ..+..+-++|=...++.++...+++.++++..+.++..
T Consensus 502 ~ii~~A~~~-~-~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~ 549 (782)
T PRK00409 502 NIIEEAKKL-I-GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKL 549 (782)
T ss_pred HHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455552 2 22233444444333333333334444444333333333
No 93
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.54 E-value=20 Score=42.37 Aligned_cols=9 Identities=33% Similarity=0.814 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 004033 413 ALRKLLDDY 421 (778)
Q Consensus 413 eL~~~V~~~ 421 (778)
.|+.++.+|
T Consensus 421 DLKnlFSKy 429 (940)
T KOG4661|consen 421 DLKNLFSKY 429 (940)
T ss_pred HHHHHHHHh
Confidence 345554444
No 94
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=71.94 E-value=22 Score=43.73 Aligned_cols=39 Identities=36% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELER---------RHREEKARLQAEAKAAEEARRKAEAEA 665 (778)
Q Consensus 627 ~kl~~e~e~le~---------~q~eek~rl~a~~~aae~a~r~~e~~~ 665 (778)
+|+.+-+++|+. +++.|+.++....+.+|++.|++|.++
T Consensus 772 e~~~~~ea~leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~ 819 (988)
T KOG2072|consen 772 EKLKQFEARLEAERNRLAERKRARIEERKQAYYREIEEERARREEEEA 819 (988)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555552 234555555556666666666655444
No 95
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=71.69 E-value=0.48 Score=43.54 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=46.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-.|+|+.+|..|++.. ++-.|+++..|.+...-..+-+.|--| |..||-+.-.+.
T Consensus 34 ~~pdY~~~I~~P~dL~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---~~~yn~~~s~~~ 88 (102)
T cd05499 34 NIPNYFSIIKKPMDLG--TISKKLQNGQYQSAKEFERDVRLIFKN---CYTFNPEGTDVY 88 (102)
T ss_pred CCCCHHHHhcCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999999887777777766 788998875555
No 96
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=70.77 E-value=15 Score=36.31 Aligned_cols=79 Identities=30% Similarity=0.379 Sum_probs=42.5
Q ss_pred chhhHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 004033 604 NRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEK-ARLQAEAKAAEEARRKAE----AEAAAEAKRKRELERE 678 (778)
Q Consensus 604 ~rfadtilka~~k~l~~g~~~dp~kl~~e~e~le~~q~eek-~rl~a~~~aae~a~r~~e----~~~~~~~~~~re~ere 678 (778)
||.|.+..|--..-|..+.... -|+|+|++|++.-.|. -+|+...|.-++...-+- +...+|+-++||.|+.
T Consensus 86 NrV~qktkklta~~LD~~k~~~---SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekk 162 (174)
T KOG3375|consen 86 NRVAQKTKKLTALDLDGPKELE---SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKK 162 (174)
T ss_pred hHHHHhhhhhhhhccCCchhhh---hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777776333333333332221 5889999999874443 445554444333211110 1124455667888888
Q ss_pred HHHHHHH
Q 004033 679 AARQALQ 685 (778)
Q Consensus 679 ~ar~al~ 685 (778)
||+-+-+
T Consensus 163 aa~~~tk 169 (174)
T KOG3375|consen 163 AADVATK 169 (174)
T ss_pred hhhhhhc
Confidence 8876543
No 97
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=69.98 E-value=1.1e+02 Score=31.74 Aligned_cols=63 Identities=33% Similarity=0.458 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHhhchhhH--HHHHHHH-----HHhhh-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 588 ERQVSPDKLYRAALLRNRFAD--TILKARE-----KALEK-GEKRDPEKLRIEREELERRHREEKARLQAEAK 652 (778)
Q Consensus 588 ~~~~sp~k~~raa~lk~rfad--tilka~~-----k~l~~-g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~ 652 (778)
..|-.|++.|+|||||+--+| .|+|-|+ ..|.| |--+| .+=+.-..-|+...+|=..+.+||+
T Consensus 65 k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGD--d~wqrf~~aeKe~E~El~eVv~EAn 135 (190)
T PF09802_consen 65 KKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGD--DLWQRFQRAEKEMEEELKEVVQEAN 135 (190)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999987766 3677666 24555 88887 2222333333444444445555544
No 98
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=68.98 E-value=0.73 Score=42.81 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+.+|..|++.. ++-.+|++..|.+-+....+-+.|.-| |.+||-+.-.+.
T Consensus 35 ~~pdYy~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~l~~~N---a~~yN~~~s~i~ 89 (105)
T cd05515 35 EYPDYYDVIKKPIDME--KIRSKIEGNQYQSLDDMVSDFVLMFDN---ACKYNEPDSQIY 89 (105)
T ss_pred cCCcHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3689999999999887 899999999999999888777777666 889998875555
No 99
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=67.83 E-value=60 Score=38.59 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004033 638 RRHREEKARLQAEAKAAEEARR 659 (778)
Q Consensus 638 ~~q~eek~rl~a~~~aae~a~r 659 (778)
+-.++|...+..+.+++++.|+
T Consensus 238 kvk~~e~~~~dee~k~i~~~rk 259 (782)
T PF07218_consen 238 KVKEEEEKELDEEHKEIEEKRK 259 (782)
T ss_pred HHHHHHHhHHhHHHHHHHHHHH
Confidence 3345555666777777766554
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.59 E-value=32 Score=39.69 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=38.4
Q ss_pred cCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 004033 621 GEKRDPEKLRIEREELERRH-------REEKARLQAEAKAAEEARRKAEAEAAAEAKRKRE-LEREAARQALQMMEKTVD 692 (778)
Q Consensus 621 g~~~dp~kl~~e~e~le~~q-------~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re-~ere~ar~al~~mekt~~ 692 (778)
.+...-.++++|+..++++- +...+.|.+.+.+.+.....+|++++ .++.+|| .+++++|. ++.|.+-.-
T Consensus 196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA-~~re~~aa~~aa~~~~-~~~e~~r~~ 273 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA-KAREAAAAAEAAAARA-RAAEAKRTG 273 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhhhhcC
Confidence 33444455555555555542 22224444555555555555554444 5566666 33444444 455554333
Q ss_pred ccccccchHHH
Q 004033 693 INENSRFMEDL 703 (778)
Q Consensus 693 ~~~n~~~~~~l 703 (778)
-.++..-+.++
T Consensus 274 ~~~~~~~p~~~ 284 (420)
T COG4942 274 ETYKPTAPEKM 284 (420)
T ss_pred CCcCCCCcchh
Confidence 33344435444
No 101
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=67.36 E-value=0.84 Score=42.56 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|||+..|..|++.. ++-.+|++..|.+-+....+-+.|--| |-.||-++-.+.
T Consensus 36 ~~pdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 90 (107)
T cd05516 36 ELPEYYELIRKPVDFK--KIKERIRNHKYRSLEDLEKDVMLLCQN---AQTFNLEGSLIY 90 (107)
T ss_pred cCCCHHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999988887777777666 778998875555
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.63 E-value=23 Score=44.33 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=16.5
Q ss_pred CcccccCCCCCHHHHHHHH-hCCCCCCHHHH
Q 004033 238 DYFTVIKHPMDLGTIKCKI-TSGQYSDPLAF 267 (778)
Q Consensus 238 DYy~IIk~PMDL~TIkkKL-~~~~Y~s~~eF 267 (778)
-|+.--.+||-|.-+...+ -.+.|..+.+|
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 4666677887666655444 23344444433
No 103
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=66.39 E-value=5 Score=48.10 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHH
Q 004033 245 HPMDLGTIKCKI 256 (778)
Q Consensus 245 ~PMDL~TIkkKL 256 (778)
.|+.|+...+++
T Consensus 968 dpv~l~ef~kr~ 979 (1463)
T PHA03308 968 DPVALGEFCKRI 979 (1463)
T ss_pred CchHHHHHHhhc
Confidence 344444444444
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=65.84 E-value=27 Score=43.78 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 639 RHREEKARLQAEAKAAEEARRKAE 662 (778)
Q Consensus 639 ~q~eek~rl~a~~~aae~a~r~~e 662 (778)
+.+++++++++ .+|+|+|++|
T Consensus 841 q~~~~~a~~~~---~~ee~~r~~e 861 (1018)
T KOG2002|consen 841 QEKEEEALIEK---ELEEARRKEE 861 (1018)
T ss_pred HHHHHHHHHHH---HHHHHHHHHH
Confidence 33455555544 4556666655
No 105
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=65.71 E-value=4.5 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=9.3
Q ss_pred CCCCHHHH-HHHHHHhhhhhcccC
Q 004033 260 QYSDPLAF-AADVRLTFSNAMTYN 282 (778)
Q Consensus 260 ~Y~s~~eF-~~DvrLIf~NA~~YN 282 (778)
++..+.+. ..-+-|+|.-++.-|
T Consensus 227 kfP~IgElLlkrLilqf~r~f~Rn 250 (739)
T KOG2140|consen 227 KFPQIGELLLKRLILQFKRSFRRN 250 (739)
T ss_pred CCchHHHHHHHHHHHHHHHHhccc
Confidence 33444432 334444444433333
No 106
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=65.00 E-value=0.73 Score=43.04 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..+|||+.+|..|++.. ++-.+|.+..|.+-+.-..+-..|.-| +-.||.+.-.+.
T Consensus 36 ~~~pdYy~~I~~P~dL~--tI~~kl~~~~Y~s~~ef~~D~~l~f~N---a~~yn~~~S~i~ 91 (106)
T cd05525 36 KKNPDYYERITDPVDLS--TIEKQILTGYYKTPEAFDSDMLKVFRN---AEKYYGRKSPIG 91 (106)
T ss_pred ccCCchhhhCCCCcCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 35799999999999887 899999999999998888777777666 778998876655
No 107
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.82 E-value=37 Score=36.40 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhcccc
Q 004033 680 ARQALQMMEKTVDIN 694 (778)
Q Consensus 680 ar~al~~mekt~~~~ 694 (778)
+-.+..+|+-.+-++
T Consensus 172 eheEylkmKaaFsVe 186 (299)
T KOG3054|consen 172 EHEEYLKMKAAFSVE 186 (299)
T ss_pred HHHHHHHHHhheeec
Confidence 456677888766654
No 108
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=64.69 E-value=1.5e+02 Score=32.19 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004033 667 AEAKRKRELEREAARQALQMM 687 (778)
Q Consensus 667 ~~~~~~re~ere~ar~al~~m 687 (778)
++.+++|+.+++++.+..++.
T Consensus 195 ~e~~~~r~~~~~~~~~~~~e~ 215 (264)
T PF13904_consen 195 EEQQQKREEEREKEQQKQQEE 215 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444433333
No 109
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=64.51 E-value=0.94 Score=41.37 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=45.3
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|+|+.+|..|++.+ ++-.||.+..|.+-..-..+-+.|--| |..||-+.-.++
T Consensus 30 ~p~Y~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 83 (97)
T cd05503 30 VPGYRKIIKKPMDFS--TIREKLESGQYKTLEEFAEDVRLVFDN---CETFNEDDSEVG 83 (97)
T ss_pred cCCHHHHhCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999887 899999999999988887776776655 788998865554
No 110
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=63.75 E-value=53 Score=34.07 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=18.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 621 GEKRDPEKLRIEREELERRHREEKARLQAE 650 (778)
Q Consensus 621 g~~~dp~kl~~e~e~le~~q~eek~rl~a~ 650 (778)
-.+.||..+.+..|.+++..++-.+++.|+
T Consensus 70 ~~~~dpd~v~~rqEa~eaAR~RmQEE~dak 99 (190)
T PF06936_consen 70 AAKKDPDVVVRRQEAMEAARRRMQEELDAK 99 (190)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888777777775544433333333
No 111
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.72 E-value=1.1 Score=42.28 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=43.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
-+|||+.+|..||+.+ ++-.++.+..|.+-+.-..+-+.|--| |-.||-+.
T Consensus 37 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~Li~~N---~~~yN~~~ 87 (112)
T cd05510 37 EAPDYYDIIKKPMDLG--TMLKKLKNLQYKSKAEFVDDLNLIWKN---CLLYNSDP 87 (112)
T ss_pred hcCCHHHHhcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999887 899999999999988887777777656 88899763
No 112
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.65 E-value=0.8 Score=42.02 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+..|..|++.. ++-.++++..|.|...-..+-+.|.-| |-.||-+.-.+.
T Consensus 34 ~~p~Y~~~I~~Pmdl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s~i~ 88 (102)
T cd05498 34 GLHDYHDIIKHPMDLS--TIKKKLDNREYADAQEFAADVRLMFSN---CYKYNPPDHPVH 88 (102)
T ss_pred CCCcHHHHccCCCcHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999877 899999999999888887777777666 788997764444
No 113
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.58 E-value=32 Score=37.42 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004033 631 IEREELERRHREEKARLQ 648 (778)
Q Consensus 631 ~e~e~le~~q~eek~rl~ 648 (778)
+|+.+||+...|||.|++
T Consensus 331 qekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 331 QEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 114
>smart00297 BROMO bromo domain.
Probab=63.39 E-value=1 Score=41.10 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
.|+|+..|..|++.. ++-.||++..|.+.+.-..+-+.|.-| |..||-+.
T Consensus 37 ~p~Y~~~i~~P~dl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~~n~~~ 86 (107)
T smart00297 37 APDYYDIIKKPMDLS--TIKKKLENGKYSSVEEFVADVQLMFSN---AKTYNGPD 86 (107)
T ss_pred ccCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 589999999999887 899999999999999888888887767 77888654
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.12 E-value=57 Score=40.66 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004033 105 ERRSLELKLKTDLEQVRVLQKK 126 (778)
Q Consensus 105 e~~~Lr~Rl~~eLeqvR~l~kk 126 (778)
+...+|+.++.--.+++....+
T Consensus 147 ~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 147 ELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443444443333
No 116
>PTZ00491 major vault protein; Provisional
Probab=62.62 E-value=19 Score=44.60 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhccccccccchHHHHHhhccccccC
Q 004033 677 REAARQALQMMEKTVDINENSRFMEDLEMLRIAQDEQL 714 (778)
Q Consensus 677 re~ar~al~~mekt~~~~~n~~~~~~le~l~~~~~~~~ 714 (778)
++.+..++++-...++|+ +..|-.-++-||.-++.-|
T Consensus 769 ~~~~~le~~k~~~la~ie-~~kf~~~v~aig~~T~~~i 805 (850)
T PTZ00491 769 QAQNELEIAKAKELADIE-ATKFERIVEALGRETLIAI 805 (850)
T ss_pred HHHhHHHHHHHHHHHHHH-HHHHHHHHHhhChHHHHHH
Confidence 344455566666667776 6666666666776554443
No 117
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=61.80 E-value=57 Score=33.67 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 657 ARRKAEAEAAAEAKRKRELEREAARQALQMME 688 (778)
Q Consensus 657 a~r~~e~~~~~~~~~~re~ere~ar~al~~me 688 (778)
+.-.+++++=.+.+++-+.+-|++|++.++=.
T Consensus 69 ~~l~~er~~~~~~~~e~~~~~e~~r~~fekek 100 (228)
T PRK06800 69 QQLLADREQFQEHVQQQMKEIEAARQQFQKEQ 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455556666666777777766543
No 118
>PLN03086 PRLI-interacting factor K; Provisional
Probab=61.23 E-value=20 Score=42.79 Aligned_cols=17 Identities=59% Similarity=0.825 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004033 630 RIEREELERRHREEKAR 646 (778)
Q Consensus 630 ~~e~e~le~~q~eek~r 646 (778)
+.-+|.||+.|++-|++
T Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (567)
T PLN03086 6 RRAREKLEREQRERKQR 22 (567)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 119
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.85 E-value=52 Score=39.21 Aligned_cols=103 Identities=31% Similarity=0.395 Sum_probs=59.3
Q ss_pred HHHHhhchhhHHHHH--------HHHH-HhhhcCCCCh---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004033 598 RAALLRNRFADTILK--------AREK-ALEKGEKRDP---EKLRIEREELERRHRE---EKARLQAEAKAAEEARRKAE 662 (778)
Q Consensus 598 raa~lk~rfadtilk--------a~~k-~l~~g~~~dp---~kl~~e~e~le~~q~e---ek~rl~a~~~aae~a~r~~e 662 (778)
-+|-|+.+.||.-++ +|+| +|.+.-..+. +||+.|+++++..-+| |..+|+.+..-..++.|-.=
T Consensus 333 e~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql 412 (546)
T PF07888_consen 333 EAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL 412 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 466777777777554 4455 5555444443 4666677666666544 44667777765555543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHh
Q 004033 663 AEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDLEML 706 (778)
Q Consensus 663 ~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~~~~~le~l 706 (778)
.| ..||+.--.+-..+.+|||.=-..++=.++.+++.|
T Consensus 413 ----sE--~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 413 ----SE--NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred ----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 124444455666677788866666666666665554
No 120
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=60.62 E-value=50 Score=37.84 Aligned_cols=10 Identities=50% Similarity=0.604 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 004033 641 REEKARLQAE 650 (778)
Q Consensus 641 ~eek~rl~a~ 650 (778)
+-|+.|++++
T Consensus 105 ~le~er~~~~ 114 (387)
T PRK09510 105 QLEKERLAAQ 114 (387)
T ss_pred HHHHHHHHHH
Confidence 3444455444
No 121
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=60.03 E-value=43 Score=41.24 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=3.7
Q ss_pred HHHHhhcc
Q 004033 702 DLEMLRIA 709 (778)
Q Consensus 702 ~le~l~~~ 709 (778)
-++.|+.+
T Consensus 339 s~~~~~~~ 346 (1064)
T KOG1144|consen 339 SVEKLGEV 346 (1064)
T ss_pred hhhhcccC
Confidence 34445544
No 122
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=59.93 E-value=1 Score=41.52 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=46.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+.+|..|++.. ++..||++..|.+...-..+-+.|.-| |.+||-+.-.+.
T Consensus 35 ~~pdYy~iIk~Pmdl~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 89 (103)
T cd05519 35 LYPDYYVIIKRPIALD--QIKRRIEGRAYKSLEEFLEDFHLMFAN---ARTYNQEGSIVY 89 (103)
T ss_pred CCcCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999998888777777666 788998765554
No 123
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.73 E-value=78 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 004033 610 ILKAREKALEKGEKRDPEKLRIEREELERR 639 (778)
Q Consensus 610 ilka~~k~l~~g~~~dp~kl~~e~e~le~~ 639 (778)
+|..|++-.. ++--+-++++.|-+.|...
T Consensus 32 ~LeeR~~~I~-~~Ld~Ae~~r~eA~~l~~e 60 (154)
T PRK06568 32 SLDAKILEVQ-EKVLKAEKLKEDAALLFEQ 60 (154)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444543332 2222334444544444443
No 124
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=59.46 E-value=1.1 Score=41.33 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+.+|..|++.. ++-.|+.+..|.+.+....+-+.|.-| |..||-+.-.+.
T Consensus 35 ~~p~Y~~~I~~P~dL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 89 (103)
T cd05500 35 NIPHYPTIIKKPMDLG--TIERKLKSNVYTSVEEFTADFNLMVDN---CLTFNGPEHPVS 89 (103)
T ss_pred cCCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5699999999999887 899999999999998888777777766 788997764444
No 125
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=59.26 E-value=55 Score=33.40 Aligned_cols=25 Identities=60% Similarity=0.727 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRHREEKARLQAEA 651 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek~rl~a~~ 651 (778)
++.|+++|+.+++.+++.++..++.
T Consensus 43 E~ER~ekEE~er~~ree~~~k~~Ee 67 (171)
T PF05672_consen 43 EQERLEKEEQERRKREELARKLAEE 67 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444443
No 126
>PLN02316 synthase/transferase
Probab=58.30 E-value=23 Score=45.24 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=6.8
Q ss_pred cEEEecCCCCHHHHH
Q 004033 398 ELEIDIDALSDDTLF 412 (778)
Q Consensus 398 EIEIDId~L~~~TL~ 412 (778)
.+-+|.+..+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~ 114 (1036)
T PLN02316 100 SISTDMDGIDDDSLD 114 (1036)
T ss_pred cccccccccchHHHH
Confidence 344444444444443
No 127
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=58.15 E-value=81 Score=32.59 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004033 631 IEREELERRHREEKARLQAEAKAA-EEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVD 692 (778)
Q Consensus 631 ~e~e~le~~q~eek~rl~a~~~aa-e~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~ 692 (778)
.+-+++-..-+++..+|.++|++- +.-.++|+.+|+...++-..-.+-++|+.|...++.+.
T Consensus 22 ~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~ 84 (198)
T PRK01558 22 RLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIK 84 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555556665555543 22244444445544444444455666777777776664
No 128
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.13 E-value=54 Score=40.41 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=7.2
Q ss_pred HHHHHHcC--CCCcccc
Q 004033 212 LLTRLMSH--QFGWVFN 226 (778)
Q Consensus 212 IL~~L~~~--~~s~~F~ 226 (778)
+++.|... .+-|||.
T Consensus 42 ~~d~~~~~r~e~~~p~w 58 (697)
T PF09726_consen 42 LADFMLEFRFEYLWPFW 58 (697)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 34444443 3456654
No 129
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=57.64 E-value=57 Score=36.80 Aligned_cols=12 Identities=58% Similarity=0.678 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 004033 652 KAAEEARRKAEA 663 (778)
Q Consensus 652 ~aae~a~r~~e~ 663 (778)
|+++++.+++|+
T Consensus 143 K~~e~a~~kae~ 154 (346)
T TIGR02794 143 KAKEEAAKQAEE 154 (346)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 130
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=56.37 E-value=14 Score=47.68 Aligned_cols=19 Identities=79% Similarity=0.674 Sum_probs=9.3
Q ss_pred CCCCCCCC-CCCCCCCCCCC
Q 004033 498 SSSESGSS-SSDSDSGSSSG 516 (778)
Q Consensus 498 SSSdS~SS-SSdSdS~sSs~ 516 (778)
|+|+|.|+ +|||+|+|||+
T Consensus 442 SsS~SESsS~SDSESESSSS 461 (1191)
T PF05110_consen 442 SSSESESSSSSDSESESSSS 461 (1191)
T ss_pred CCCCCCccCccccccccccc
Confidence 33433333 35666665554
No 131
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.12 E-value=80 Score=39.40 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004033 643 EKARLQAEAKAAEEARR 659 (778)
Q Consensus 643 ek~rl~a~~~aae~a~r 659 (778)
.+++|+.+.+..++.++
T Consensus 544 ~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 544 LKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 132
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=56.05 E-value=1.9 Score=51.51 Aligned_cols=76 Identities=8% Similarity=-0.077 Sum_probs=66.8
Q ss_pred CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHH
Q 004033 222 GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299 (778)
Q Consensus 222 s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~~F 299 (778)
...|..-++ ...+|+||.+++-||.+.-+.+++..+.|.....|..|..+.|.|+..||.....++..+..|.+.+
T Consensus 213 Ier~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 345555334 4479999999999999999999999999999999999999999999999999999999998887643
No 133
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.89 E-value=94 Score=30.89 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCCchHHHHHHHhhchhhHHHHHHHHH---------HhhhcCCCChHHHHHHHHHHHH
Q 004033 580 HEGESAPSERQVSPDKLYRAALLRNRFADTILKAREK---------ALEKGEKRDPEKLRIEREELER 638 (778)
Q Consensus 580 ~~g~~~~~~~~~sp~k~~raa~lk~rfadtilka~~k---------~l~~g~~~dp~kl~~e~e~le~ 638 (778)
..|+....-.+++|++.--.=-|...|.+.+...|++ +|...++.|++|++.-..|+..
T Consensus 33 ~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~ 100 (143)
T PRK11546 33 GHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMEN 100 (143)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3455555677899999888888889999988877764 4456888888877664444433
No 134
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=55.67 E-value=43 Score=37.24 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=6.8
Q ss_pred CCcEEEec
Q 004033 396 EDELEIDI 403 (778)
Q Consensus 396 ~dEIEIDI 403 (778)
.|.|+|+|
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 78888888
No 135
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=55.66 E-value=7 Score=48.67 Aligned_cols=29 Identities=52% Similarity=0.579 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRHREEKARLQAEAKAAEEARRK 660 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~ 660 (778)
-||=+.+||+ -||+|-|||.+|.|++.|+
T Consensus 578 SKLAkKRee~-----~ek~RReaEq~~reerERe 606 (982)
T PF03154_consen 578 SKLAKKREER-----VEKARREAEQRAREERERE 606 (982)
T ss_pred cHHhhhhHHH-----HHHHHhhhhccchhhhhhc
Confidence 4666666654 2456667777776665554
No 136
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=54.89 E-value=1.1e+02 Score=30.99 Aligned_cols=30 Identities=47% Similarity=0.543 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRHREEKARLQAEAKAAEE 656 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek~rl~a~~~aae~ 656 (778)
+|-++..++.+++.+||....+--++..+.
T Consensus 69 Ek~r~k~~E~err~~EE~~EE~Rl~rere~ 98 (157)
T PF15236_consen 69 EKRRQKQEEEERRRREEEEEEERLAREREE 98 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566666666666666655443333333333
No 137
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=54.81 E-value=45 Score=39.03 Aligned_cols=10 Identities=70% Similarity=0.783 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 004033 673 RELEREAARQ 682 (778)
Q Consensus 673 re~ere~ar~ 682 (778)
++-|||.+|+
T Consensus 355 ~~ee~e~~R~ 364 (460)
T KOG1363|consen 355 EEEERETARQ 364 (460)
T ss_pred HHHHHHHHHH
Confidence 3556666665
No 138
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.30 E-value=70 Score=35.81 Aligned_cols=65 Identities=26% Similarity=0.178 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 004033 631 IEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSR 698 (778)
Q Consensus 631 ~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~ 698 (778)
+..|.|=++.+||+++||++..+.....++.|. +-+..-||+....|+++-.-=|-.+-+++...
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee---esq~LnrELaE~layqq~L~~eyQatf~eq~~ 194 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEE---ESQTLNRELAEALAYQQELNDEYQATFVEQHS 194 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 356889999999999999999999888876663 33355677777778887777777777766544
No 139
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=54.21 E-value=1e+02 Score=31.36 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 004033 608 DTILKAREKALE 619 (778)
Q Consensus 608 dtilka~~k~l~ 619 (778)
..|+..|.....
T Consensus 57 ~~~l~~R~~~I~ 68 (181)
T PRK13454 57 GAVLAERQGTIT 68 (181)
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 140
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.70 E-value=67 Score=37.07 Aligned_cols=50 Identities=32% Similarity=0.387 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 004033 639 RHREEKARLQAEAKAAEEARRKAEAEA----AAEAKRKRELEREAARQALQMME 688 (778)
Q Consensus 639 ~q~eek~rl~a~~~aae~a~r~~e~~~----~~~~~~~re~ere~ar~al~~me 688 (778)
+-+.|-+-|++++.+-|+.+|+.|..| ++|.||+||..-..+|.|=.+-|
T Consensus 247 rlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~E 300 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKE 300 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888766544 67788888876666666544443
No 141
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.50 E-value=55 Score=35.67 Aligned_cols=8 Identities=38% Similarity=0.439 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 004033 643 EKARLQAE 650 (778)
Q Consensus 643 ek~rl~a~ 650 (778)
||..|+.+
T Consensus 332 ekqeleqm 339 (445)
T KOG2891|consen 332 EKQELEQM 339 (445)
T ss_pred HHHHHHHH
Confidence 44444433
No 142
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=53.27 E-value=2e+02 Score=28.11 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004033 669 AKRKRELEREAARQALQM 686 (778)
Q Consensus 669 ~~~~re~ere~ar~al~~ 686 (778)
++.+-+.+++.|+..|..
T Consensus 97 A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 97 KKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 143
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=53.20 E-value=1.9e+02 Score=29.42 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHhh
Q 004033 605 RFADTILKAREKALE 619 (778)
Q Consensus 605 rfadtilka~~k~l~ 619 (778)
++--.++..|.....
T Consensus 47 kPI~~~l~~R~~~I~ 61 (184)
T CHL00019 47 GVLSDLLDNRKQTIL 61 (184)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445556666665544
No 144
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=53.05 E-value=66 Score=37.36 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHhh
Q 004033 360 TNEEKRILSTELEAL 374 (778)
Q Consensus 360 T~eEK~kLs~~I~~L 374 (778)
+.+++.++.+.+..|
T Consensus 80 d~e~~~~~qqe~~~L 94 (429)
T PRK00247 80 DEASIRELQQKQKDL 94 (429)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555555555444
No 145
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.38 E-value=36 Score=38.97 Aligned_cols=20 Identities=30% Similarity=0.154 Sum_probs=10.2
Q ss_pred hhcCCCChHHHHHHHHHHHH
Q 004033 619 EKGEKRDPEKLRIEREELER 638 (778)
Q Consensus 619 ~~g~~~dp~kl~~e~e~le~ 638 (778)
..--+++-++.|++.++--.
T Consensus 361 S~~~k~kt~~~RQ~~~e~~~ 380 (440)
T KOG2357|consen 361 SKDAKAKTDKNRQRVEEEFL 380 (440)
T ss_pred hHHHHhhhhhhHHHHHHHHH
Confidence 33335555666665554333
No 146
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=52.33 E-value=1.7 Score=39.65 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|++.|..|++.. ++-.|+.+..|.+-+.-..+=+.|--| |..||-+.-.+.
T Consensus 31 ~~p~Y~~~I~~P~dl~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s~i~ 85 (99)
T cd05506 31 GLPDYFDIIKKPMDLG--TVKKKLEKGEYSSPEEFAADVRLTFAN---AMRYNPPGNDVH 85 (99)
T ss_pred CCCCHHHHHcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999988877666666655 788987765544
No 147
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.45 E-value=9.2 Score=45.07 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 004033 639 RHREEKARLQA 649 (778)
Q Consensus 639 ~q~eek~rl~a 649 (778)
.|++.++--||
T Consensus 90 ~qk~~~~s~~~ 100 (1103)
T KOG1420|consen 90 AQKINNGSSQA 100 (1103)
T ss_pred hhhhhcccchh
Confidence 34444544333
No 148
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.25 E-value=2.4e+02 Score=29.80 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=4.0
Q ss_pred CCChHHHH
Q 004033 623 KRDPEKLR 630 (778)
Q Consensus 623 ~~dp~kl~ 630 (778)
.-||+...
T Consensus 149 edDp~lfk 156 (250)
T KOG1150|consen 149 EDDPELFK 156 (250)
T ss_pred ccCHHHHH
Confidence 34565543
No 149
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=50.24 E-value=2.3 Score=39.67 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccC---ccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDT---EMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~---~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-.|+|+.+|..|++.. ++-.++++ ..|.+.+.-..+-+.|.-| |-.||-+.-.+.
T Consensus 32 ~~p~Y~~iI~~PmdL~--tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~ 89 (109)
T cd05502 32 SVPNYYKIIKTPMDLS--LIRKKLQPKSPQHYSSPEEFVADVRLMFKN---CYKFNEEDSEVA 89 (109)
T ss_pred CCCCHHHHCCCCccHH--HHHHHHhcCCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 89999998 5888888877777777666 788998764444
No 150
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.75 E-value=1.6e+02 Score=29.65 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 628 KLRIEREELERRHREEKARLQAEAK 652 (778)
Q Consensus 628 kl~~e~e~le~~q~eek~rl~a~~~ 652 (778)
+|..+.++.-+.-+.|..+|.++|+
T Consensus 56 ~l~~e~e~~L~~Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 56 LLFEQTNAQIKKLETLRSQMIEESN 80 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443
No 151
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=49.18 E-value=2e+02 Score=30.06 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhh
Q 004033 608 DTILKAREKALE 619 (778)
Q Consensus 608 dtilka~~k~l~ 619 (778)
..++..|++...
T Consensus 74 ~~~L~~R~~~I~ 85 (205)
T PRK06231 74 QRFLNKRKELIE 85 (205)
T ss_pred HHHHHHHHHHHH
Confidence 345555655443
No 152
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=49.07 E-value=21 Score=46.25 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004033 108 SLELKLKTDL 117 (778)
Q Consensus 108 ~Lr~Rl~~eL 117 (778)
+|=.|+..+|
T Consensus 46 eLssriQ~mL 55 (1191)
T PF05110_consen 46 ELSSRIQNML 55 (1191)
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 153
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=48.87 E-value=74 Score=35.37 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.4
Q ss_pred HHHHHHHhhchhhHHHHH
Q 004033 595 KLYRAALLRNRFADTILK 612 (778)
Q Consensus 595 k~~raa~lk~rfadtilk 612 (778)
.++.+++ .|+|.+-+
T Consensus 235 ~l~~~v~---~l~D~~~~ 249 (321)
T PF07946_consen 235 PLLKLVF---YLIDKLAR 249 (321)
T ss_pred HHHHHHH---HHHHHhhe
Confidence 3444444 57777763
No 154
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=48.51 E-value=5.7 Score=48.60 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCCccccCCCCcccccCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHhhhh
Q 004033 228 PVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQY--------------S----------DPLA------FAADVRLTFSN 277 (778)
Q Consensus 228 PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y--------------~----------s~~e------F~~DvrLIf~N 277 (778)
++| +..+|.|..+...|-+|+|++..|.+..| . ++.+ ...-+.+|-.|
T Consensus 89 ~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~a 166 (1113)
T KOG0644|consen 89 MLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCA 166 (1113)
T ss_pred CcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccc
Confidence 445 33788999999999999999999998777 2 3333 56778889999
Q ss_pred hcccCCCCCHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLR 296 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~ 296 (778)
|+.+|.||+ +|+-++.+.
T Consensus 167 t~~~akPgt-mvqkmk~ik 184 (1113)
T KOG0644|consen 167 TFSIAKPGT-MVQKMKNIK 184 (1113)
T ss_pred eeeecCcHH-HHHHHHHHH
Confidence 999999999 554444433
No 155
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=48.32 E-value=85 Score=32.58 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004033 647 LQAEAKAAEEARRKAEA----EAAAEAKRKRELEREAARQALQMMEK 689 (778)
Q Consensus 647 l~a~~~aae~a~r~~e~----~~~~~~~~~re~ere~ar~al~~mek 689 (778)
+.+...|.++||++.++ +|+.....++++|.|+-|++|.+-|+
T Consensus 78 v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~EEEKRrqkie~we~ 124 (190)
T PF06936_consen 78 VVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEEEEKRRQKIEMWES 124 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444333 23333444556666666777755444
No 156
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=47.40 E-value=2.6e+02 Score=33.65 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=14.3
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHH
Q 004033 397 DELEIDIDALSDDTLFALRKLLDDYLL 423 (778)
Q Consensus 397 dEIEIDId~L~~~TL~eL~~~V~~~l~ 423 (778)
+.-|+++|++..=+-..=..|+..|-+
T Consensus 36 e~eefn~dd~n~wm~ldd~nflntwtk 62 (782)
T PF07218_consen 36 EAEEFNVDDINSWMKLDDANFLNTWTK 62 (782)
T ss_pred cccccCcccchhcccccHHHHHHHHhh
Confidence 344666676654443334456665543
No 157
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.40 E-value=3.2 Score=39.08 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLe 118 (778)
.|+|+..|-.||+-+ ++-.++.++.|.+-+....+-+.|--| +..||-+.-.+. .-.++|.+=-.+||.
T Consensus 36 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---~~~yNg~~s~~~------~~A~~l~~d~~~el~ 104 (109)
T cd05492 36 LPKRRRLIHTHLDVA--DIQEKINSEKYTSLEEFKADALLLLHN---TAIFHGADSEQY------DAARWLYRDTCHDLR 104 (109)
T ss_pred CCCHHHHhCCCCcHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 799999999999988 899999999999999998887777666 677886654433 334566666666666
Q ss_pred HHH
Q 004033 119 QVR 121 (778)
Q Consensus 119 qvR 121 (778)
.+|
T Consensus 105 Ei~ 107 (109)
T cd05492 105 ELR 107 (109)
T ss_pred HHh
Confidence 554
No 158
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=47.05 E-value=1e+02 Score=27.95 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 004033 624 RDPEKLRIEREELERRHREEK-ARLQAEAKAAEEARRK 660 (778)
Q Consensus 624 ~dp~kl~~e~e~le~~q~eek-~rl~a~~~aae~a~r~ 660 (778)
..|+==|+|+|++|+++..+. ..|+++.+..|+....
T Consensus 21 ~~~~lSRRERE~iekq~A~erY~klh~~GKT~eakaDL 58 (82)
T PF10252_consen 21 APPELSRREREEIEKQRARERYMKLHAEGKTDEAKADL 58 (82)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhchHHHHHhH
Confidence 445555789999999985554 6788888887776443
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=46.52 E-value=84 Score=38.13 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=7.3
Q ss_pred cCCCChHHHHHHHHHHH
Q 004033 621 GEKRDPEKLRIEREELE 637 (778)
Q Consensus 621 g~~~dp~kl~~e~e~le 637 (778)
-++.+-+|++.+.|+-+
T Consensus 289 keE~~kekee~Klekd~ 305 (811)
T KOG4364|consen 289 KEENNKEKEETKLEKDI 305 (811)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 160
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=46.26 E-value=2.3 Score=39.46 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=46.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
..|+|+..|..|++.. ++-.|+.+..|.+...-..+-+.|.-| +..||-+.-.+.
T Consensus 36 ~~pdYy~~I~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 90 (104)
T cd05522 36 REPEYYQEISNPISLD--DIKKKVKRRKYKSFDQFLNDLNLMFEN---AKLYNENDSQEY 90 (104)
T ss_pred ccCcHHHHhCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4689999999999887 899999999999998888888888777 778998875555
No 161
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=46.07 E-value=5.7 Score=38.33 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCCCCCCC-CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCC
Q 004033 31 SKGHSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDG 85 (778)
Q Consensus 31 ~~g~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~ 85 (778)
-+||-||| ||+| +|+.||.-+ --.|.-+|..+.. ..+.+..|..|
T Consensus 4 LRGhtSGlAvPty--VvD~PGGgG----KvPl~P~Yli~~~----~~~~vlrNyeG 49 (127)
T PF12544_consen 4 LRGHTSGLAVPTY--VVDAPGGGG----KVPLMPNYLISQS----GDKVVLRNYEG 49 (127)
T ss_dssp TCTTC-GGG--EE--EEEETTTTE----EEE-----EEEEE----SSEEEEE-TTS
T ss_pred ccccccccccceE--EEECCCCCC----CcccCCceEEecC----CCEEEEECCCC
Confidence 47999999 9999 899997322 2234555554433 34566667554
No 162
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=46.00 E-value=74 Score=35.40 Aligned_cols=26 Identities=46% Similarity=0.417 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004033 664 EAAAEAKRKRELEREAARQALQMMEK 689 (778)
Q Consensus 664 ~~~~~~~~~re~ere~ar~al~~mek 689 (778)
++++|++++-|.++.++-.|--+-|-
T Consensus 164 Ka~aeAkkkAe~a~kA~eeAkaKAe~ 189 (387)
T COG3064 164 KAAAEAKKKAEEAAKAAEEAKAKAEA 189 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778777777777777666
No 163
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.67 E-value=2.1e+02 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 004033 608 DTILKAREKALEKGEKRDPEKLRIEREELERR 639 (778)
Q Consensus 608 dtilka~~k~l~~g~~~dp~kl~~e~e~le~~ 639 (778)
..||..|+..+.. +-.+-++++.+-+++...
T Consensus 79 ~~vLe~R~~~I~~-~L~~Ae~~k~eAe~~~~~ 109 (204)
T PRK09174 79 GGIIETRRDRIAQ-DLDQAARLKQEADAAVAA 109 (204)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455555544432 122334444444444433
No 164
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=45.24 E-value=2.6e+02 Score=28.03 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
+|..|+...
T Consensus 44 ~l~~R~~~I 52 (173)
T PRK13460 44 ALDERASGV 52 (173)
T ss_pred HHHHHHHHH
Confidence 344444433
No 165
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.15 E-value=1.1e+02 Score=38.19 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 004033 676 EREAARQALQMMEK 689 (778)
Q Consensus 676 ere~ar~al~~mek 689 (778)
+.+.+|++|.++.+
T Consensus 608 ~~~~~~~~l~~~~~ 621 (782)
T PRK00409 608 ELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444455544433
No 166
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=92 Score=33.56 Aligned_cols=9 Identities=44% Similarity=0.364 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 004033 665 AAAEAKRKR 673 (778)
Q Consensus 665 ~~~~~~~~r 673 (778)
+++|+.+|+
T Consensus 149 ~~eEae~k~ 157 (299)
T KOG3054|consen 149 LAEEAELKE 157 (299)
T ss_pred HHHHHHHhH
Confidence 444554444
No 167
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.66 E-value=2.8e+02 Score=27.45 Aligned_cols=6 Identities=50% Similarity=0.767 Sum_probs=2.5
Q ss_pred HHHHHH
Q 004033 611 LKAREK 616 (778)
Q Consensus 611 lka~~k 616 (778)
+..|+.
T Consensus 37 l~~R~~ 42 (164)
T PRK14471 37 VKERED 42 (164)
T ss_pred HHHHHH
Confidence 344443
No 168
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=44.48 E-value=2.6e+02 Score=27.27 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 004033 609 TILKAREKAL 618 (778)
Q Consensus 609 tilka~~k~l 618 (778)
.++..|+...
T Consensus 31 ~~l~~R~~~I 40 (156)
T PRK05759 31 KALEERQKKI 40 (156)
T ss_pred HHHHHHHHHH
Confidence 3445555433
No 169
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=43.99 E-value=91 Score=36.85 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=6.6
Q ss_pred hhhhhccccccCCC
Q 004033 741 PLEQLGLYMKMDDD 754 (778)
Q Consensus 741 ~le~lgl~~k~d~~ 754 (778)
|---||-+.+-|-+
T Consensus 370 ~~~~ls~LvllD~~ 383 (489)
T PF05262_consen 370 PNHYLSELVLLDSD 383 (489)
T ss_pred CCCcceeEEEEeCC
Confidence 33345555555543
No 170
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=43.77 E-value=2.1e+02 Score=31.71 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=6.3
Q ss_pred CCchHHHHHHH
Q 004033 591 VSPDKLYRAAL 601 (778)
Q Consensus 591 ~sp~k~~raa~ 601 (778)
+.|...+..|+
T Consensus 203 i~~p~~v~~Ai 213 (317)
T TIGR01932 203 INYSDELSESI 213 (317)
T ss_pred cCCCHHHHHHH
Confidence 33445667776
No 171
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.64 E-value=1.3e+02 Score=34.81 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccccccchHHHH
Q 004033 627 EKLRIEREELERRH-REEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELERE-AARQALQMMEKTVDINENSRFMEDLE 704 (778)
Q Consensus 627 ~kl~~e~e~le~~q-~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere-~ar~al~~mekt~~~~~n~~~~~~le 704 (778)
.|||-|.|+|...- +-+|.--+.-++-+++.+..+|+-+....+.++|+||. |-=+.|.+-|+..++++ -.|+.++=
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemde-ery~Ne~~ 334 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDE-ERYLNEFV 334 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHhhhh
Confidence 35566666665442 22222222223333334444444455556677788763 33344555566666663 33455555
Q ss_pred Hhhc
Q 004033 705 MLRI 708 (778)
Q Consensus 705 ~l~~ 708 (778)
+.|.
T Consensus 335 ~~g~ 338 (552)
T KOG2129|consen 335 DFGD 338 (552)
T ss_pred ccCC
Confidence 5554
No 172
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.37 E-value=2.6e+02 Score=28.48 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004033 671 RKRELEREAARQALQM 686 (778)
Q Consensus 671 ~~re~ere~ar~al~~ 686 (778)
.+.+.+|+.|+.+|..
T Consensus 134 ~~I~~~k~~a~~~l~~ 149 (181)
T PRK13454 134 KRIAEIRAGALESVEE 149 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 173
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=43.34 E-value=16 Score=40.36 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHHhhhhh
Q 004033 258 SGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 258 ~~~Y~s~~eF~~DvrLIf~NA 278 (778)
...|.-+.=|..|+-.+..|-
T Consensus 155 l~dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 155 LEDYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hhhcCcchhhhHHHHHhcCcc
Confidence 345777777888877666654
No 174
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=43.33 E-value=15 Score=45.76 Aligned_cols=56 Identities=43% Similarity=0.557 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 623 KRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 685 (778)
Q Consensus 623 ~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~ 685 (778)
--.|+||-+.++.+ +||++-+|+++++|.-+|.++ ++.|..|+||.|||+.|-+-.
T Consensus 806 Pl~p~~~akl~~~~-----~~kak~aa~~ra~er~~~~r~--re~e~~~e~e~~~~aersak~ 861 (1229)
T KOG2133|consen 806 PLSPSKLAKLRSNV-----EEKAKRAAEQRARERSERERE--RETELEREREVEREAERSAKE 861 (1229)
T ss_pred CCCcccccccccch-----HHHHHHHHHHHHHHhhhhhhh--hhhcccccccccchHHhhhhh
Confidence 34556665555554 578888999999997777544 555666777777877776655
No 175
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=43.14 E-value=2.8 Score=36.69 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
...|+|+..|..|++.. ++-.|+.++.|.+...-..+-+.|.-| |..||-+.
T Consensus 30 ~~~~~Y~~~i~~P~~l~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~~n~~~ 81 (99)
T cd04369 30 KEAPDYYEVIKNPMDLS--TIKKKLKNGEYKSLEEFEADVRLIFSN---AKTYNGPG 81 (99)
T ss_pred hcCCCHHHHHhCcccHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 46899999999999887 899999999999888887777777666 66777554
No 176
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.11 E-value=2.9e+02 Score=28.85 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=5.4
Q ss_pred hhhHHHHHHHH
Q 004033 605 RFADTILKARE 615 (778)
Q Consensus 605 rfadtilka~~ 615 (778)
..++.|-.|.+
T Consensus 83 ~I~~~L~~Ae~ 93 (205)
T PRK06231 83 LIEAEINQANE 93 (205)
T ss_pred HHHHHHHHHHH
Confidence 44455555544
No 177
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.28 E-value=3.1e+02 Score=27.58 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
++..|+...
T Consensus 46 ~l~~R~~~I 54 (173)
T PRK13453 46 VMDKRERDI 54 (173)
T ss_pred HHHHHHHHH
Confidence 344444433
No 178
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=41.99 E-value=2.5e+02 Score=29.87 Aligned_cols=7 Identities=57% Similarity=0.781 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 004033 610 ILKAREK 616 (778)
Q Consensus 610 ilka~~k 616 (778)
++..|++
T Consensus 33 ~l~~R~~ 39 (246)
T TIGR03321 33 AMDAREK 39 (246)
T ss_pred HHHHHHH
Confidence 3344444
No 179
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=41.01 E-value=3.5e+02 Score=26.36 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
++..|+...
T Consensus 35 ~l~~R~~~I 43 (141)
T PRK08476 35 FMDNRNASI 43 (141)
T ss_pred HHHHHHHHH
Confidence 444454433
No 180
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.52 E-value=3e+02 Score=27.66 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 004033 609 TILKAREKAL 618 (778)
Q Consensus 609 tilka~~k~l 618 (778)
.++..|++..
T Consensus 45 ~~l~~R~~~I 54 (175)
T PRK14472 45 SALEEREKGI 54 (175)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 181
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=40.30 E-value=38 Score=33.52 Aligned_cols=39 Identities=41% Similarity=0.537 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 647 LQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 685 (778)
Q Consensus 647 l~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~ 685 (778)
||...+|||+.|+-.|+.--.....+||.+|+.++.|+.
T Consensus 47 IqkKLeAAEERRKs~Ea~~l~~laekreh~~ev~~Ka~E 85 (140)
T PF00836_consen 47 IQKKLEAAEERRKSQEAQVLKKLAEKREHEREVLQKALE 85 (140)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665555444444556666666555543
No 182
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.20 E-value=3.5e+02 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhh
Q 004033 608 DTILKAREKALE 619 (778)
Q Consensus 608 dtilka~~k~l~ 619 (778)
..+|..|++.+.
T Consensus 45 ~~~l~~R~~~I~ 56 (174)
T PRK07352 45 GKILEERREAIL 56 (174)
T ss_pred HHHHHHHHHHHH
Confidence 455666665554
No 183
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=39.89 E-value=3.1e+02 Score=27.78 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=6.2
Q ss_pred HHHHHHHHHhh
Q 004033 609 TILKAREKALE 619 (778)
Q Consensus 609 tilka~~k~l~ 619 (778)
.+|..|++...
T Consensus 54 ~~L~~R~~~I~ 64 (184)
T PRK13455 54 GMLDKRAEGIR 64 (184)
T ss_pred HHHHHHHHHHH
Confidence 45666665444
No 184
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=39.73 E-value=1.2e+02 Score=33.63 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCc
Q 004033 581 EGESAPSERQVSP 593 (778)
Q Consensus 581 ~g~~~~~~~~~sp 593 (778)
+|+=.-|+.-|-|
T Consensus 120 ~gdLFDFd~EV~P 132 (291)
T PF06098_consen 120 EGDLFDFDEEVKP 132 (291)
T ss_pred cccccchHhhhhh
Confidence 3443346666666
No 185
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.64 E-value=3.2e+02 Score=29.42 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
++..|++..
T Consensus 33 ~l~eR~~~I 41 (250)
T PRK14474 33 VMKKRQQRI 41 (250)
T ss_pred HHHHHHHHH
Confidence 444555433
No 186
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=39.59 E-value=1.9e+02 Score=30.97 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 640 HREEKARLQAEAKAAEEARRKAEAEAAAEAK 670 (778)
Q Consensus 640 q~eek~rl~a~~~aae~a~r~~e~~~~~~~~ 670 (778)
.++|+.+|++.+.+|+..-.+.+..+...++
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~e 75 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEE 75 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888887776666654443333
No 187
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=38.67 E-value=81 Score=37.03 Aligned_cols=7 Identities=29% Similarity=1.132 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 004033 381 SIIDFLK 387 (778)
Q Consensus 381 ~Iv~IIk 387 (778)
.|+++|+
T Consensus 209 ~v~~~l~ 215 (460)
T KOG1363|consen 209 AVVDYLR 215 (460)
T ss_pred HHHHHHh
Confidence 3444444
No 188
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=38.08 E-value=4.1e+02 Score=26.24 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
++..|+...
T Consensus 50 ~l~~R~~~I 58 (156)
T CHL00118 50 VLDERKEYI 58 (156)
T ss_pred HHHHHHHHH
Confidence 344555433
No 189
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=37.89 E-value=2.9e+02 Score=32.22 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004033 628 KLRIEREELERR 639 (778)
Q Consensus 628 kl~~e~e~le~~ 639 (778)
-|+.+.-++.+-
T Consensus 324 ~~~~~~~~~~~~ 335 (429)
T PRK00247 324 ELHAENAEIKKT 335 (429)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 190
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.62 E-value=8.8e+02 Score=30.00 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=19.0
Q ss_pred cceeecCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 93 LQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKK 126 (778)
Q Consensus 93 ~~v~~~s~~s~~e~~~Lr~Rl~~eLeqvR~l~kk 126 (778)
.+||-+-+||=+.+..-. +-.--|-.||+|++-
T Consensus 51 ~evVAIKKMsySGKQs~E-KWqDIlKEVrFL~~l 83 (948)
T KOG0577|consen 51 SEVVAIKKMSYSGKQSNE-KWQDILKEVRFLRQL 83 (948)
T ss_pred cceeeeeeccccccccHH-HHHHHHHHHHHHHhc
Confidence 466667777665543322 344556677777653
No 191
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=37.37 E-value=1.2e+02 Score=35.63 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=4.7
Q ss_pred cchHHHHHh
Q 004033 698 RFMEDLEML 706 (778)
Q Consensus 698 ~~~~~le~l 706 (778)
.+|.||..|
T Consensus 457 klmed~dv~ 465 (708)
T KOG3654|consen 457 KLMEDLDVL 465 (708)
T ss_pred HHHHhhccc
Confidence 445566633
No 192
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=37.29 E-value=2.2e+02 Score=30.37 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q 004033 606 FADTILKARE 615 (778)
Q Consensus 606 fadtilka~~ 615 (778)
.++.|-.|..
T Consensus 41 I~~~l~~Ae~ 50 (246)
T TIGR03321 41 IAGELADADT 50 (246)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 193
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=37.24 E-value=2.6e+02 Score=32.01 Aligned_cols=38 Identities=34% Similarity=0.310 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 004033 607 ADTILKAREKALEKGEKRDPEKLRIEREELERRH-----REEKARLQAEAKAA 654 (778)
Q Consensus 607 adtilka~~k~l~~g~~~dp~kl~~e~e~le~~q-----~eek~rl~a~~~aa 654 (778)
||.+-.||| -..||+.++++|..- -.||+.-+|++++|
T Consensus 292 ~~I~~VarE----------Ns~LqrQKle~e~~l~a~qeakek~~KEAqarea 334 (442)
T PF06637_consen 292 AGIERVARE----------NSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA 334 (442)
T ss_pred hhHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666 234566666666651 33444445555444
No 194
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.82 E-value=4.5e+02 Score=26.36 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.8
Q ss_pred hhhHHHHHHHH
Q 004033 605 RFADTILKARE 615 (778)
Q Consensus 605 rfadtilka~~ 615 (778)
+.++.|..|..
T Consensus 54 ~I~~~l~~A~~ 64 (174)
T PRK07352 54 AILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 195
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.46 E-value=4.2e+02 Score=26.56 Aligned_cols=10 Identities=40% Similarity=0.405 Sum_probs=4.1
Q ss_pred hhHHHHHHHH
Q 004033 606 FADTILKARE 615 (778)
Q Consensus 606 fadtilka~~ 615 (778)
..+.|-.|.+
T Consensus 52 I~~~l~~Ae~ 61 (173)
T PRK13460 52 VQNDINKASE 61 (173)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 196
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=36.35 E-value=4.5e+02 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 004033 608 DTILKAREKALEKGEKRDPEKLRIEREEL 636 (778)
Q Consensus 608 dtilka~~k~l~~g~~~dp~kl~~e~e~l 636 (778)
--+|..|.+...++ -.+-++++.+-+++
T Consensus 36 ~~~le~R~~~I~~~-l~~Ae~~k~eAe~~ 63 (167)
T PRK14475 36 AGALDAYAAKIQAE-LDEAQRLREEAQAL 63 (167)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34555666544321 22334444444433
No 197
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=36.18 E-value=81 Score=29.01 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004033 259 GQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (778)
Q Consensus 259 ~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~ 308 (778)
..|.|..-|...+..|-.....++..+..+..+|..|...|++.|+.+..
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46888888888887777777777777889999999999999999986643
No 198
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=36.12 E-value=88 Score=35.76 Aligned_cols=57 Identities=33% Similarity=0.359 Sum_probs=39.9
Q ss_pred HhhchhhHH---HHHHHHHH---hhhcCCCChHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 004033 601 LLRNRFADT---ILKAREKA---LEKGEKRDPEKLRIEREELERR------HREEKARLQAEAKAAEEA 657 (778)
Q Consensus 601 ~lk~rfadt---ilka~~k~---l~~g~~~dp~kl~~e~e~le~~------q~eek~rl~a~~~aae~a 657 (778)
-||.||=-+ |+|||..+ |+.-..-|-++-++-|+-|++. |-+|.+-|.+|+|--|++
T Consensus 172 dLKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEar 240 (445)
T KOG2656|consen 172 DLKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEAR 240 (445)
T ss_pred HHHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 467887554 78888764 6777788988888888888875 455666677777644433
No 199
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=35.76 E-value=2.6e+02 Score=28.25 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004033 643 EKARLQ 648 (778)
Q Consensus 643 ek~rl~ 648 (778)
+.+.+.
T Consensus 28 ~~~~i~ 33 (188)
T PRK02292 28 EAEEII 33 (188)
T ss_pred HHHHHH
Confidence 333333
No 200
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.60 E-value=2.5e+02 Score=28.04 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=33.8
Q ss_pred HHHHHHHhh--hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 611 LKAREKALE--KGEKRDPEKLRIEREELERRHREEKARLQAEAKAA 654 (778)
Q Consensus 611 lka~~k~l~--~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aa 654 (778)
|+-|.++|. ++...|.+-||.+.+.|+..-.+.++..++++...
T Consensus 36 l~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 36 LKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777775 46779999999999999988877777776666543
No 201
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.55 E-value=2e+02 Score=33.43 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 004033 364 KRILSTELEAL 374 (778)
Q Consensus 364 K~kLs~~I~~L 374 (778)
..+|...|..|
T Consensus 61 ~~kL~~~lk~~ 71 (420)
T COG4942 61 RAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 202
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.96 E-value=2.7e+02 Score=24.52 Aligned_cols=56 Identities=32% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 628 KLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMME 688 (778)
Q Consensus 628 kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~me 688 (778)
-||.|.|||. |+++-|.-+++.|..+|...+.+++ ..|.+-.-=.|+-|.-|-+||
T Consensus 22 LLQmEieELK----Eknn~l~~e~q~~q~~reaL~~ene-qlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 22 LLQMEIEELK----EKNNSLSQEVQNAQHQREALERENE-QLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHH----HHhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Confidence 3677888884 4556666666655554433332221 222222222344566666775
No 203
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=34.74 E-value=27 Score=38.71 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 004033 298 YFEVRWKA 305 (778)
Q Consensus 298 ~Fe~~~k~ 305 (778)
+|.+-|..
T Consensus 163 ~F~dDlF~ 170 (407)
T KOG2130|consen 163 YFRDDLFQ 170 (407)
T ss_pred hhhHHHHH
Confidence 44444443
No 204
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=7.9e+02 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCchHHHHHHHh-----hchhhHHHH---HHHHHHhh
Q 004033 591 VSPDKLYRAALL-----RNRFADTIL---KAREKALE 619 (778)
Q Consensus 591 ~sp~k~~raa~l-----k~rfadtil---ka~~k~l~ 619 (778)
..|+-+-|||-- .+++|--.| +.||+|..
T Consensus 73 FDpeaLERaAKAlrein~s~~aK~vfel~r~qE~Trq 109 (630)
T KOG0742|consen 73 FDPEALERAAKALREINHSPYAKDVFELARMQEQTRQ 109 (630)
T ss_pred CChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHH
Confidence 348878887742 667876554 56777653
No 205
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=34.45 E-value=3.5e+02 Score=31.58 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 004033 609 TILKAREKAL 618 (778)
Q Consensus 609 tilka~~k~l 618 (778)
.++..|++..
T Consensus 28 ~~l~~R~~~I 37 (445)
T PRK13428 28 RLMAARQDTV 37 (445)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 206
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=34.20 E-value=4.2e+02 Score=28.07 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.9
Q ss_pred HHHHHH
Q 004033 596 LYRAAL 601 (778)
Q Consensus 596 ~~raa~ 601 (778)
.++.|+
T Consensus 150 ~v~~a~ 155 (261)
T TIGR01933 150 EVKEAF 155 (261)
T ss_pred HHHHHH
Confidence 345554
No 207
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=34.11 E-value=45 Score=26.25 Aligned_cols=16 Identities=63% Similarity=0.789 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 004033 675 LEREAARQALQMMEKT 690 (778)
Q Consensus 675 ~ere~ar~al~~mekt 690 (778)
+-||+.|||+.++||.
T Consensus 24 lRre~erqA~~QLekA 39 (42)
T PF12052_consen 24 LRREAERQALAQLEKA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566678888888874
No 208
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=34.04 E-value=5.4e+02 Score=26.45 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004033 628 KLRIEREELERRHREEKARLQA 649 (778)
Q Consensus 628 kl~~e~e~le~~q~eek~rl~a 649 (778)
.+|+|+|+.++++++|..|+..
T Consensus 36 ReQkErEE~ER~ekEE~er~~r 57 (171)
T PF05672_consen 36 REQKEREEQERLEKEEQERRKR 57 (171)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 3477788877777777666543
No 209
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=33.33 E-value=4.8e+02 Score=25.71 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.8
Q ss_pred hhhHHHHHHHH
Q 004033 605 RFADTILKARE 615 (778)
Q Consensus 605 rfadtilka~~ 615 (778)
+.++.+-.|.+
T Consensus 57 ~I~~~l~~Ae~ 67 (156)
T CHL00118 57 YIRKNLTKASE 67 (156)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 210
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=32.87 E-value=1.4e+02 Score=33.60 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=8.7
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 004033 625 DPEKLRIEREELERRHREEK 644 (778)
Q Consensus 625 dp~kl~~e~e~le~~q~eek 644 (778)
|-.++++++++-+.....+|
T Consensus 90 ~~~~~~rer~E~eL~eLkek 109 (361)
T KOG3634|consen 90 DFDRIEREREEKELKELKEK 109 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 211
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=32.55 E-value=94 Score=31.09 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 004033 629 LRIEREELERRHREEKARLQAEAKAAE---EARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSR 698 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~aae---~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~ 698 (778)
+.+-++||+..+..++..+.+++++|. +.+--+|..||.+ +++..|+ --..|+.+=+++.|.+...
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~--~~~~~e~--rI~~L~~~L~~A~iid~~~ 80 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKK--RLREIDR--RVRFLTKRLENLKVVDYSP 80 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHH--HHHHHHH--HHHHHHHHHccCEEECCCC
Confidence 344444555444444444444444443 3344444444432 2233333 2334444444555544333
No 212
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=31.91 E-value=3.6e+02 Score=27.82 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004033 669 AKRKRELEREAARQALQMMEKT 690 (778)
Q Consensus 669 ~~~~re~ere~ar~al~~mekt 690 (778)
+.|+.+.++.+.+.++.+|=.+
T Consensus 62 ~qr~~~~~~K~~~AqikQlI~~ 83 (177)
T PF09831_consen 62 RQRQAEAERKEIQAQIKQLIEQ 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666443
No 213
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=31.88 E-value=3.7e+02 Score=28.28 Aligned_cols=11 Identities=9% Similarity=0.492 Sum_probs=5.1
Q ss_pred HHHHHHHHHhh
Q 004033 680 ARQALQMMEKT 690 (778)
Q Consensus 680 ar~al~~mekt 690 (778)
+|+++..+++.
T Consensus 77 ~R~~~l~aKqe 87 (207)
T PRK01005 77 GKRSLESLKQA 87 (207)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 214
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.74 E-value=2e+02 Score=37.77 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004033 629 LRIEREELERRHREEKARLQAEAKA-AEEA-------RRKAEAEAA----AEAKRKRELEREAARQALQMMEKTVDI 693 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~a-ae~a-------~r~~e~~~~----~~~~~~re~ere~ar~al~~mekt~~~ 693 (778)
|+.|||+=.+--++|-..||+|.+- ||+. .|-+|||.| .+.-+.-|+|-++|-+++.+++|--+.
T Consensus 1167 l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~ 1243 (1320)
T PLN03188 1167 LKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHEN 1243 (1320)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666556678888889888763 3322 444455432 333334467777777777777775433
No 215
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=31.45 E-value=3.9e+02 Score=26.80 Aligned_cols=14 Identities=50% Similarity=0.634 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 004033 630 RIEREELERRHREE 643 (778)
Q Consensus 630 ~~e~e~le~~q~ee 643 (778)
++++++|++.-.+.
T Consensus 75 r~~~eELe~ileen 88 (149)
T PF15346_consen 75 RKKREELEKILEEN 88 (149)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 216
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=30.71 E-value=2.2e+02 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004033 673 RELEREAARQALQMME 688 (778)
Q Consensus 673 re~ere~ar~al~~me 688 (778)
.|.||.+|+++-.+|.
T Consensus 260 qeee~ke~e~~~~k~~ 275 (591)
T KOG2412|consen 260 QEEERKEAEEQAEKEV 275 (591)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3556666666666654
No 217
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=30.05 E-value=5.4e+02 Score=25.28 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004033 611 LKAREK 616 (778)
Q Consensus 611 lka~~k 616 (778)
|..|+.
T Consensus 34 l~~R~~ 39 (159)
T PRK13461 34 IDSRQS 39 (159)
T ss_pred HHHHHH
Confidence 334443
No 218
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=29.89 E-value=1.3e+02 Score=35.74 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004033 642 EEKARLQAE 650 (778)
Q Consensus 642 eek~rl~a~ 650 (778)
+|++|++|+
T Consensus 219 ~e~kr~Eae 227 (591)
T KOG2412|consen 219 SEEKREEAE 227 (591)
T ss_pred HHhhhhhhH
Confidence 334444443
No 219
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.37 E-value=5.7e+02 Score=27.50 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 004033 674 ELEREAARQALQMMEK 689 (778)
Q Consensus 674 e~ere~ar~al~~mek 689 (778)
++..+.+..+++--+|
T Consensus 120 ~L~~~v~~la~~~A~k 135 (250)
T PRK14474 120 ALQQQTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 220
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=29.18 E-value=3.6e+02 Score=29.67 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 004033 683 ALQMMEK 689 (778)
Q Consensus 683 al~~mek 689 (778)
++.++|+
T Consensus 141 EkeEiER 147 (276)
T PF06991_consen 141 EKEEIER 147 (276)
T ss_pred HHHHHHH
Confidence 3344443
No 221
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=28.79 E-value=27 Score=43.75 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=7.6
Q ss_pred HHHHHHhhhcccCcccCCC
Q 004033 121 RVLQKKVASLSSNVVLSPS 139 (778)
Q Consensus 121 R~l~kki~~~~~~~~lsp~ 139 (778)
|.-.||.......+-.||+
T Consensus 96 ~~~~k~~k~~~~~~p~sps 114 (982)
T PF03154_consen 96 RAAPKKSKTQELSRPNSPS 114 (982)
T ss_pred ccccccCCcccCCCCCCCc
Confidence 4444554433322224444
No 222
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.61 E-value=1.2e+02 Score=30.33 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004033 629 LRIEREELERRHREEKARLQAEAKAAEEA---RRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINE 695 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~aae~a---~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~ 695 (778)
+.+-++||+..+..++.++.+++++|.+. +--+|..||. ++++++|+ .-..|+.+=+++.|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak--~~~~~le~--rI~~L~~~L~~A~iid 75 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGK--KRLREIDR--RVRFLTKRLENLKVVD 75 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHH--HHHHHHHH--HHHHHHHHHhcCEEeC
Confidence 44445555555555555555555555332 3333333332 23333433 2344555555555543
No 223
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.60 E-value=8.4e+02 Score=27.04 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 004033 632 EREELERR 639 (778)
Q Consensus 632 e~e~le~~ 639 (778)
|+++|.-+
T Consensus 90 EI~eLksQ 97 (305)
T PF15290_consen 90 EIDELKSQ 97 (305)
T ss_pred HHHHHHHH
Confidence 55565544
No 224
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.40 E-value=7.8e+02 Score=27.98 Aligned_cols=40 Identities=30% Similarity=0.510 Sum_probs=25.1
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHH
Q 004033 594 DKLYRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREE 643 (778)
Q Consensus 594 ~k~~raa~lk~rfadtilka~~k~l~~g~~~dp~kl~~e~e~le~~q~ee 643 (778)
++.|++| |+..|.++-+-+...+ |=||+=+|-+|.+|.|-
T Consensus 62 e~qlk~a------a~~llq~kirk~~e~~----eglr~i~es~~e~q~e~ 101 (401)
T PF06785_consen 62 EKQLKTA------AGQLLQTKIRKITEKD----EGLRKIRESVEERQQES 101 (401)
T ss_pred HHHHHHH------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHH
Confidence 4555555 4677777666554322 34788888888877553
No 225
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=28.03 E-value=6.3e+02 Score=25.38 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004033 608 DTILKAR 614 (778)
Q Consensus 608 dtilka~ 614 (778)
+.|-.|.
T Consensus 56 ~~l~~Ae 62 (173)
T PRK13453 56 RDIDDAE 62 (173)
T ss_pred HHHHHHH
Confidence 3333333
No 226
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=27.41 E-value=3.3e+02 Score=31.93 Aligned_cols=62 Identities=34% Similarity=0.429 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 629 LRIEREELERRHREEKARLQAEAKA-AEEA-------RRKAEAEAA----AEAKRKRELEREAARQALQMMEKT 690 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~a-ae~a-------~r~~e~~~~----~~~~~~re~ere~ar~al~~mekt 690 (778)
||.|||+=.+.-++|-..|++|.+- ||+. .|-.||+.+ .+.-..-|+|-++|-+++.+++|-
T Consensus 397 lr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 397 LRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666556667788888887663 3322 444454432 233333466667777777777764
No 227
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=26.99 E-value=5.5e+02 Score=29.59 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=34.4
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 617 ALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEA 663 (778)
Q Consensus 617 ~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~ 663 (778)
.|.++=..+-+..-+|-++|+++..+-...|+|--.|.|.|.++|.+
T Consensus 285 elar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqa 331 (442)
T PF06637_consen 285 ELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQA 331 (442)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777888888888888877777777777777766665554
No 228
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=7.9e+02 Score=26.10 Aligned_cols=33 Identities=45% Similarity=0.430 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 004033 648 QAEAKAAEEARRKAE--AEAAAEAKRKRELEREAA 680 (778)
Q Consensus 648 ~a~~~aae~a~r~~e--~~~~~~~~~~re~ere~a 680 (778)
+-.-=+|+-++++++ +.|..|.+|+||-|=+|+
T Consensus 162 ~~mklfae~erkRk~~e~r~~~eRkr~re~eIeae 196 (250)
T KOG1150|consen 162 QVMKLFAELERKRKELEARANEERKRQREEEIEAE 196 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344555544443 345556666665555444
No 229
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.15 E-value=3.3e+02 Score=32.60 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004033 678 EAARQALQMM 687 (778)
Q Consensus 678 e~ar~al~~m 687 (778)
++..+.|.+|
T Consensus 340 ~~~~~~l~~~ 349 (582)
T PF09731_consen 340 EAHEEHLKNE 349 (582)
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 230
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=26.07 E-value=80 Score=39.23 Aligned_cols=6 Identities=50% Similarity=1.409 Sum_probs=3.2
Q ss_pred cccccc
Q 004033 74 PKRKCI 79 (778)
Q Consensus 74 ~~rk~i 79 (778)
|.|-||
T Consensus 1317 psrdc~ 1322 (2033)
T PHA03309 1317 PSRDCF 1322 (2033)
T ss_pred cccccC
Confidence 445555
No 231
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=25.79 E-value=67 Score=25.24 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004033 112 KLKTDLEQVRVLQKK 126 (778)
Q Consensus 112 Rl~~eLeqvR~l~kk 126 (778)
|++.|||.|+..+++
T Consensus 30 rfraelekvkl~~k~ 44 (48)
T PF10872_consen 30 RFRAELEKVKLMQKR 44 (48)
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999998886
No 232
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=25.78 E-value=6.7e+02 Score=26.01 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=5.0
Q ss_pred chHHHHHHH
Q 004033 593 PDKLYRAAL 601 (778)
Q Consensus 593 p~k~~raa~ 601 (778)
|...++.||
T Consensus 150 ~p~~i~~ai 158 (242)
T cd03405 150 LPEEVSESV 158 (242)
T ss_pred CCHHHHHHH
Confidence 344566666
No 233
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=3.4e+02 Score=31.49 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=5.5
Q ss_pred CCCCcEEEecC
Q 004033 394 TGEDELEIDID 404 (778)
Q Consensus 394 ~~~dEIEIDId 404 (778)
..+|.|.|++.
T Consensus 207 P~~D~vt~ev~ 217 (440)
T KOG2357|consen 207 PVGDQVTFEVT 217 (440)
T ss_pred cccceEEEEEe
Confidence 34455555543
No 234
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=24.55 E-value=1.2e+02 Score=33.86 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 004033 624 RDPEKLRIEREELERRHREEKA 645 (778)
Q Consensus 624 ~dp~kl~~e~e~le~~q~eek~ 645 (778)
+|-++.+.||.+||.+||++++
T Consensus 297 gd~~~A~~eK~~lEe~QR~~rk 318 (354)
T PF01237_consen 297 GDIDKAQEEKKRLEEKQRADRK 318 (354)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999988876643
No 235
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.32 E-value=8.3e+02 Score=25.50 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=4.0
Q ss_pred hhhHHHHHHH
Q 004033 605 RFADTILKAR 614 (778)
Q Consensus 605 rfadtilka~ 614 (778)
+.++.|-.|.
T Consensus 88 ~I~~~L~~Ae 97 (204)
T PRK09174 88 RIAQDLDQAA 97 (204)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 236
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=24.11 E-value=5e+02 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004033 632 EREELERRHREEKARLQAEAK 652 (778)
Q Consensus 632 e~e~le~~q~eek~rl~a~~~ 652 (778)
.+++.+++-..+.+.+..+++
T Consensus 33 i~~~a~~~a~~~~~~i~~~a~ 53 (198)
T PRK03963 33 IKEEARKRAESKAEWILRKAK 53 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 237
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=23.88 E-value=97 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 250 GTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 250 ~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
..|+..+..|.|.|..+++.|.-.+|
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~l 37 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLL 37 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987766
No 238
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.61 E-value=2.3e+02 Score=28.37 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAA 666 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~ 666 (778)
.||+.|.+.|.. .|-+-++..++|++-=+...-||..|+
T Consensus 14 ~~L~~EL~~L~~-~r~~i~~~i~~Ar~~GDlsENaey~aa 52 (158)
T PRK05892 14 DHLEAELARLRA-RRDRLAVEVNDRGMIGDHGDQAEAIQR 52 (158)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHhCCCcchhhhHHHH
Confidence 456666666643 233333333333333333444444444
No 239
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=23.55 E-value=5.8e+02 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRHREEK 644 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek 644 (778)
+.|++.++..+.++..|.
T Consensus 156 ~~lr~~q~~fe~~R~aEl 173 (291)
T PF06098_consen 156 AALRRQQRAFEELRNAEL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 240
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.37 E-value=5.6e+02 Score=25.20 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 004033 610 ILKAREKAL 618 (778)
Q Consensus 610 ilka~~k~l 618 (778)
++..|+...
T Consensus 30 ~l~~R~~~I 38 (159)
T PRK09173 30 SLDARADRI 38 (159)
T ss_pred HHHHHHHHH
Confidence 344555433
No 241
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.34 E-value=4.9e+02 Score=30.41 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=4.6
Q ss_pred cchHHHHHhh
Q 004033 698 RFMEDLEMLR 707 (778)
Q Consensus 698 ~~~~~le~l~ 707 (778)
.|+++|..|.
T Consensus 149 ~~i~~l~~~~ 158 (445)
T PRK13428 149 RFLDELDAMA 158 (445)
T ss_pred HHHHHhhccC
Confidence 3454554443
No 242
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=23.20 E-value=7.3e+02 Score=24.49 Aligned_cols=6 Identities=33% Similarity=0.673 Sum_probs=2.5
Q ss_pred HHHHHH
Q 004033 611 LKAREK 616 (778)
Q Consensus 611 lka~~k 616 (778)
+..|+.
T Consensus 37 l~~R~~ 42 (164)
T PRK14473 37 LNERTR 42 (164)
T ss_pred HHHHHH
Confidence 344443
No 243
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.03 E-value=5.6e+02 Score=25.55 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 004033 675 LEREAARQAL 684 (778)
Q Consensus 675 ~ere~ar~al 684 (778)
.||++|+.+|
T Consensus 117 ~e~~~a~~el 126 (167)
T PRK14475 117 QAEAQAAADV 126 (167)
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 244
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.70 E-value=8.1e+02 Score=24.79 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.2
Q ss_pred hhhHHHHHHHH
Q 004033 605 RFADTILKARE 615 (778)
Q Consensus 605 rfadtilka~~ 615 (778)
..++.+..|.+
T Consensus 59 ~I~~~l~~Ae~ 69 (184)
T CHL00019 59 TILNTIRNSEE 69 (184)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 245
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.54 E-value=2.7e+02 Score=29.86 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004033 641 REEKARLQAEAKAAEEA 657 (778)
Q Consensus 641 ~eek~rl~a~~~aae~a 657 (778)
.+|+.+|++++.+++..
T Consensus 74 ~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAE 90 (246)
T ss_dssp -------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555544433
No 246
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=22.38 E-value=4.8e+02 Score=30.39 Aligned_cols=67 Identities=28% Similarity=0.278 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 004033 607 ADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKA-AEEARRKAEAEAAAEAK----RKRELEREAAR 681 (778)
Q Consensus 607 adtilka~~k~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~a-ae~a~r~~e~~~~~~~~----~~re~ere~ar 681 (778)
+-.|..|+. ++.+...+-+-|+++|.++|+| ++++..+|+++|++=.+ -+..-+==+.|
T Consensus 262 ~~~i~eAea----------------yan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~R 325 (419)
T PRK10930 262 QQYIREAEA----------------YTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRER 325 (419)
T ss_pred HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHH
Q ss_pred HHHHHHHh
Q 004033 682 QALQMMEK 689 (778)
Q Consensus 682 ~al~~mek 689 (778)
.=|+-||+
T Consensus 326 lYletme~ 333 (419)
T PRK10930 326 LYIETMEK 333 (419)
T ss_pred HHHHHHHH
No 247
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.31 E-value=7.5e+02 Score=24.28 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q 004033 606 FADTILKARE 615 (778)
Q Consensus 606 fadtilka~~ 615 (778)
.++.|-.|.+
T Consensus 38 I~~~l~~Ae~ 47 (159)
T PRK09173 38 IKNELAEARR 47 (159)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 248
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.29 E-value=3e+02 Score=32.09 Aligned_cols=65 Identities=26% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchH
Q 004033 633 REELERRHRE------EKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFME 701 (778)
Q Consensus 633 ~e~le~~q~e------ek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n~~~~~ 701 (778)
+++||+.|.| ||..|+...+.|-..+- .....|-.+-| +|-|.-|.||.+-||-.+-+-...-+-
T Consensus 265 Qk~Lekar~e~rnvavek~~lerkl~ea~rl~e---lreg~e~e~~r-kelE~lR~~L~kAEkele~nS~wsaP~ 335 (575)
T KOG4403|consen 265 QKRLEKAREEQRNVAVEKLDLERKLDEAPRLSE---LREGVENETSR-KELEQLRVALEKAEKELEANSSWSAPL 335 (575)
T ss_pred HHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhh---hhcchhHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCcH
Confidence 3455555544 56666666663333322 22233333333 355778999999998877774443343
No 249
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=22.28 E-value=5.4e+02 Score=25.86 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004033 681 RQALQMM 687 (778)
Q Consensus 681 r~al~~m 687 (778)
|+.+..|
T Consensus 117 r~k~e~e 123 (149)
T PF15346_consen 117 RQKMEKE 123 (149)
T ss_pred HHHHHHH
Confidence 3333333
No 250
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.08 E-value=5.4e+02 Score=27.48 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=4.0
Q ss_pred HHHHHHH
Q 004033 595 KLYRAAL 601 (778)
Q Consensus 595 k~~raa~ 601 (778)
..++.||
T Consensus 143 ~~v~~A~ 149 (262)
T cd03407 143 AEVKRAM 149 (262)
T ss_pred HHHHHHH
Confidence 3466666
No 251
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=2.1e+02 Score=33.71 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004033 102 SQTERRSLELKLKTDLE 118 (778)
Q Consensus 102 s~~e~~~Lr~Rl~~eLe 118 (778)
++.|.|+--.||.++-|
T Consensus 95 tpeEIreE~Erl~r~~d 111 (546)
T KOG0718|consen 95 TPEEIREEYERLQRERD 111 (546)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45555555555555533
No 252
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=21.08 E-value=3.5e+02 Score=30.67 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=32.8
Q ss_pred cCCCCCCCCCCCCCCCCchH-HHHHHHhhchhhHHHHHHHHHHhhh
Q 004033 576 ADGHHEGESAPSERQVSPDK-LYRAALLRNRFADTILKAREKALEK 620 (778)
Q Consensus 576 ~~~~~~g~~~~~~~~~sp~k-~~raa~lk~rfadtilka~~k~l~~ 620 (778)
.+-+..|.+.|+-+.+||+- -+-||+--.|-..+.-.|-++-|.|
T Consensus 480 ~dqqasgl~sp~s~dLSP~L~d~~AA~Qla~~gps~~q~l~Rf~Sq 525 (561)
T KOG1103|consen 480 MDQQASGLNSPASMDLSPDLEDLEAAIQLANAGPSSNQALERFLSQ 525 (561)
T ss_pred CcccccccCCCccCCCCccHHHHHHHHHHHhcCCchhHHHHHHHhh
Confidence 34455788889999999974 4666665566667777888877764
No 253
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.00 E-value=2.6e+02 Score=27.44 Aligned_cols=53 Identities=28% Similarity=0.277 Sum_probs=29.5
Q ss_pred hhh-HHHHHHHHH-Hhh-h--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 605 RFA-DTILKAREK-ALE-K--GEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAE 668 (778)
Q Consensus 605 rfa-dtilka~~k-~l~-~--g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~ 668 (778)
-|| |.|+|||+- .|= . |....+ ..|.+.-++|+.+.+++++.++++-.++++.
T Consensus 73 elA~dIi~kakqIe~LIdsLPg~~~se-----------e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 130 (144)
T PF11221_consen 73 ELATDIIRKAKQIEYLIDSLPGIEVSE-----------EEQLKRIKELEEENEEAEEELQEAVKEAEEL 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSSS-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 567788876 332 2 544443 3355555677777777776666544344433
No 254
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.92 E-value=2.4e+02 Score=28.53 Aligned_cols=13 Identities=46% Similarity=0.386 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 004033 672 KRELEREAARQAL 684 (778)
Q Consensus 672 ~re~ere~ar~al 684 (778)
+-|..|+-|..|.
T Consensus 143 kEe~lr~lA~~aR 155 (158)
T PF02731_consen 143 KEEKLRELAQRAR 155 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555543
No 255
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=20.90 E-value=1.1e+03 Score=25.54 Aligned_cols=46 Identities=33% Similarity=0.375 Sum_probs=27.2
Q ss_pred hchhhHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 603 RNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKA 653 (778)
Q Consensus 603 k~rfadtilka~~k~l~~g~~~dp~kl~~e~e~le~~q~eek~rl~a~~~a 653 (778)
...+...+++|++++-.. -+++|.+.|++...-++|.+++..+|++
T Consensus 76 ~~~a~~~l~~~~~ea~~~-----l~~a~~q~e~~~~ea~~e~e~~~~~a~~ 121 (281)
T PRK06669 76 EEEAKEELLKKTDEASSI-----IEKLQMQIEREQEEWEEELERLIEEAKA 121 (281)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777887754322 2466666666666655555555554443
No 256
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.89 E-value=7.7e+02 Score=23.89 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 004033 607 ADTILKARE 615 (778)
Q Consensus 607 adtilka~~ 615 (778)
.+.|-.|.+
T Consensus 41 ~~~l~~a~~ 49 (156)
T PRK05759 41 ADGLAAAER 49 (156)
T ss_pred HHHHHHHHH
Confidence 333443333
No 257
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.80 E-value=1.7e+02 Score=30.61 Aligned_cols=15 Identities=67% Similarity=0.727 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHH
Q 004033 626 PEKLRIEREELERRH 640 (778)
Q Consensus 626 p~kl~~e~e~le~~q 640 (778)
-+|.|+|+|+||.+-
T Consensus 128 ~~~~~~~~~~~~~~~ 142 (197)
T PRK12585 128 IEKARQEREELEERM 142 (197)
T ss_pred HHHHHHhHHHHHHHH
Confidence 367777888887664
No 258
>PRK12472 hypothetical protein; Provisional
Probab=20.64 E-value=9.9e+02 Score=28.48 Aligned_cols=23 Identities=52% Similarity=0.513 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004033 649 AEAKAAEEARRKAEAEAAAEAKR 671 (778)
Q Consensus 649 a~~~aae~a~r~~e~~~~~~~~~ 671 (778)
|+.++++++.+-..|++.+++++
T Consensus 267 ~~~~~~~a~~~~~~a~~~~~~~~ 289 (508)
T PRK12472 267 AAQQAAEAATQLDTAKADAEAKR 289 (508)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444444444333344444433
No 259
>COG2118 DNA-binding protein [General function prediction only]
Probab=20.47 E-value=3.4e+02 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhcccc
Q 004033 679 AARQALQMMEKTVDIN 694 (778)
Q Consensus 679 ~ar~al~~mekt~~~~ 694 (778)
+.-..|-.|-.|=.|.
T Consensus 71 avE~qLi~LaqtGri~ 86 (116)
T COG2118 71 AVENQLIQLAQTGRIT 86 (116)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3444444444444444
No 260
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.31 E-value=3.6e+02 Score=28.34 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 004033 671 RKRELEREAARQALQMMEKTVD 692 (778)
Q Consensus 671 ~~re~ere~ar~al~~mekt~~ 692 (778)
+=++.+-|+.+-+.+.|+-+..
T Consensus 102 kLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 102 KLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555667777777776654
No 261
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=20.12 E-value=4.8e+02 Score=23.71 Aligned_cols=46 Identities=41% Similarity=0.524 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 635 ELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQM 686 (778)
Q Consensus 635 ~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~ 686 (778)
+..++.++|+...-|+-+|.|--.|.. |-..+-|+|=|.-|.||.+
T Consensus 38 EekrrLkeEkKkAKAeqrA~EfEqRak------ehqErDEkElEERrKALe~ 83 (86)
T PF15437_consen 38 EEKRRLKEEKKKAKAEQRAREFEQRAK------EHQERDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhc
Confidence 344555666666555555555444321 2222234444445666653
No 262
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.06 E-value=4.8e+02 Score=28.54 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 625 DPEKLRIEREELERRHREEKARLQAEAKAAEEARRK 660 (778)
Q Consensus 625 dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~ 660 (778)
--+.++++.+.++..+++..+.++.+.+.-++..+.
T Consensus 212 k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~ 247 (297)
T PF02841_consen 212 KAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQ 247 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777776666554
Done!