Query 004033
Match_columns 778
No_of_seqs 402 out of 1514
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 99.9 1.8E-27 6.2E-32 225.6 10.2 105 202-306 20-127 (130)
2 3g0l_A Hwalp4, bromodomain adj 99.9 4.9E-27 1.7E-31 218.5 12.9 103 203-307 12-114 (117)
3 2oss_A HUNK1 protein, bromodom 99.9 3.9E-27 1.3E-31 222.6 11.9 105 202-306 19-123 (127)
4 3fkm_X Signaling protein; brom 99.9 6.1E-27 2.1E-31 230.8 12.4 110 198-307 15-124 (166)
5 3d7c_A General control of amin 99.9 8.9E-27 3.1E-31 215.3 11.4 104 202-307 5-108 (112)
6 4alg_A Bromodomain-containing 99.9 9.8E-27 3.4E-31 226.7 11.3 107 201-307 29-135 (154)
7 3p1f_A CREB-binding protein; s 99.9 1.9E-26 6.6E-31 215.1 12.0 109 201-309 8-117 (119)
8 3jvl_A Bromodomain-containing 99.9 5.6E-27 1.9E-31 219.1 8.3 107 201-307 6-115 (120)
9 2d9e_A Peregrin; four-helix bu 99.9 2.5E-26 8.6E-31 215.3 11.9 106 203-310 6-111 (121)
10 2dat_A Possible global transcr 99.9 2.7E-26 9.2E-31 215.6 11.6 103 202-306 11-119 (123)
11 3q2e_A Bromodomain and WD repe 99.9 2.2E-26 7.4E-31 216.1 11.0 108 202-311 8-116 (123)
12 3mb3_A PH-interacting protein; 99.9 2E-26 6.9E-31 219.6 10.7 107 202-310 19-126 (135)
13 1e6i_A Transcriptional activat 99.9 2.4E-26 8.2E-31 215.4 10.9 102 205-308 14-115 (121)
14 2grc_A Probable global transcr 99.9 5.1E-26 1.7E-30 215.4 11.6 106 202-309 9-121 (129)
15 2i7k_A Bromodomain-containing 99.9 5.8E-26 2E-30 211.7 11.8 103 202-306 6-108 (117)
16 2yyn_A Transcription intermedi 99.9 6.1E-26 2.1E-30 216.5 12.0 105 200-307 16-122 (135)
17 3nxb_A CAT eye syndrome critic 99.9 5.2E-26 1.8E-30 211.3 11.2 101 203-305 15-115 (116)
18 3uv5_A Transcription initiatio 99.9 2.4E-26 8.4E-31 242.0 8.5 198 38-310 43-241 (265)
19 3mb4_A Protein polybromo-1; PB 99.9 5.4E-26 1.8E-30 213.7 9.5 103 203-307 14-122 (124)
20 3ljw_A Protein polybromo-1; al 99.9 1.4E-25 4.9E-30 209.7 11.3 108 202-311 6-119 (120)
21 3rcw_A Bromodomain-containing 99.9 2.1E-25 7.3E-30 212.5 12.6 107 202-310 11-117 (135)
22 3iu5_A Protein polybromo-1; PB 99.9 1.1E-25 3.6E-30 209.3 9.4 104 203-308 4-113 (116)
23 3hme_A Bromodomain-containing 99.9 2.9E-25 1E-29 208.5 11.6 102 203-306 12-113 (123)
24 3mqm_A Probable histone-lysine 99.9 2.7E-25 9.3E-30 209.4 11.3 107 202-310 7-119 (126)
25 3k2j_A Protein polybromo-1; PB 99.9 5.9E-25 2E-29 208.4 11.6 106 202-309 15-126 (130)
26 3uv4_A Second bromodomain of h 99.9 1.8E-24 6.2E-29 211.5 10.7 106 203-310 28-134 (158)
27 3aad_A Transcription initiatio 99.9 2.8E-25 9.5E-30 237.1 5.4 198 38-310 76-274 (292)
28 2ri7_A Nucleosome-remodeling f 99.9 1.5E-24 5E-29 214.6 8.6 104 201-306 69-172 (174)
29 2r10_A Chromatin structure-rem 99.9 2.4E-24 8.1E-29 236.1 9.3 87 218-306 227-313 (361)
30 3o36_A Transcription intermedi 99.9 1.2E-23 4.2E-28 210.0 13.0 104 200-306 77-182 (184)
31 2r0y_A Chromatin structure-rem 99.9 2.4E-24 8.2E-29 231.6 6.7 87 218-306 177-263 (311)
32 3tlp_A Protein polybromo-1; PB 99.9 1.1E-23 3.6E-28 204.2 10.4 101 205-307 25-132 (150)
33 3dai_A ATPase family AAA domai 99.9 2.2E-23 7.5E-28 197.5 11.8 101 202-304 8-112 (130)
34 2ro1_A Transcription intermedi 99.9 4.5E-23 1.5E-27 207.2 9.9 101 200-307 72-177 (189)
35 3uv5_A Transcription initiatio 99.9 9.3E-23 3.2E-27 214.7 11.5 106 203-310 13-118 (265)
36 2dkw_A Hypothetical protein KI 99.9 1.9E-22 6.4E-27 191.5 11.4 97 201-304 9-109 (131)
37 3u5n_A E3 ubiquitin-protein li 99.9 1.6E-22 5.4E-27 205.7 11.5 104 200-306 77-200 (207)
38 3aad_A Transcription initiatio 99.9 2.6E-22 8.9E-27 214.2 9.2 105 202-308 45-149 (292)
39 2r10_A Chromatin structure-rem 99.8 2.2E-19 7.4E-24 196.9 10.2 100 204-307 78-180 (361)
40 2r0y_A Chromatin structure-rem 99.7 6.4E-19 2.2E-23 189.5 6.6 101 203-307 27-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 4.7E-17 1.6E-21 156.3 12.7 101 203-309 6-112 (147)
42 2jns_A Bromodomain-containing 99.5 3.7E-15 1.3E-19 132.7 2.6 75 351-425 10-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.4 1.9E-13 6.3E-18 136.5 8.5 98 202-312 73-170 (183)
44 2d9e_A Peregrin; four-helix bu 93.7 0.0067 2.3E-07 56.3 -1.7 81 38-129 36-116 (121)
45 2lm0_A AF4/FMR2 family member 92.4 0.18 6E-06 46.7 5.7 60 360-419 60-120 (125)
46 2dat_A Possible global transcr 91.4 0.013 4.4E-07 54.4 -3.0 72 39-131 49-120 (123)
47 3rcw_A Bromodomain-containing 90.4 0.028 9.7E-07 52.8 -1.7 85 39-134 43-127 (135)
48 3hme_A Bromodomain-containing 89.2 0.021 7.3E-07 53.0 -3.6 75 38-123 42-116 (123)
49 4alg_A Bromodomain-containing 89.2 0.027 9.3E-07 54.4 -3.0 73 39-132 64-136 (154)
50 2oss_A HUNK1 protein, bromodom 89.1 0.023 8E-07 53.1 -3.4 73 38-131 52-124 (127)
51 2ouo_A HUNK1 protein, bromodom 88.7 0.026 8.9E-07 52.9 -3.4 54 39-97 57-110 (130)
52 1e6i_A Transcriptional activat 87.3 0.035 1.2E-06 51.3 -3.4 55 38-97 42-96 (121)
53 3uv4_A Second bromodomain of h 87.2 0.045 1.5E-06 53.1 -2.9 79 38-127 59-137 (158)
54 3d7c_A General control of amin 86.7 0.04 1.4E-06 50.2 -3.4 55 38-97 36-90 (112)
55 3jvl_A Bromodomain-containing 86.0 0.047 1.6E-06 50.3 -3.3 72 39-131 44-115 (120)
56 2i7k_A Bromodomain-containing 84.8 0.076 2.6E-06 48.9 -2.6 55 38-97 37-91 (117)
57 3p1f_A CREB-binding protein; s 82.9 0.087 3E-06 48.4 -3.0 54 39-97 44-97 (119)
58 3fkm_X Signaling protein; brom 82.1 0.079 2.7E-06 51.7 -3.8 55 38-97 52-106 (166)
59 2grc_A Probable global transcr 82.1 0.079 2.7E-06 49.5 -3.7 55 38-97 47-101 (129)
60 3ljw_A Protein polybromo-1; al 81.9 0.052 1.8E-06 50.1 -5.0 54 39-97 44-97 (120)
61 3iu5_A Protein polybromo-1; PB 81.6 0.067 2.3E-06 49.0 -4.3 54 39-97 41-94 (116)
62 3nxb_A CAT eye syndrome critic 80.8 0.077 2.6E-06 48.5 -4.1 54 39-97 46-99 (116)
63 2zuo_A MVP, major vault protei 80.8 3.6 0.00012 49.1 8.7 37 677-714 774-810 (861)
64 3mqm_A Probable histone-lysine 80.8 0.12 4E-06 48.0 -3.0 54 39-97 45-98 (126)
65 3k2j_A Protein polybromo-1; PB 80.7 0.072 2.5E-06 50.0 -4.5 54 39-97 53-106 (130)
66 3mb4_A Protein polybromo-1; PB 79.6 0.091 3.1E-06 48.7 -4.1 54 39-97 51-104 (124)
67 3g0l_A Hwalp4, bromodomain adj 79.6 0.14 4.6E-06 46.9 -3.0 54 39-97 43-96 (117)
68 2dkw_A Hypothetical protein KI 79.1 0.041 1.4E-06 51.8 -6.8 52 39-95 37-88 (131)
69 3tlp_A Protein polybromo-1; PB 79.0 0.12 4.1E-06 49.4 -3.7 54 39-97 61-114 (150)
70 2ri7_A Nucleosome-remodeling f 77.6 0.12 4.1E-06 50.3 -4.2 55 38-97 101-155 (174)
71 3mb3_A PH-interacting protein; 77.4 0.18 6E-06 47.4 -3.0 50 38-92 50-99 (135)
72 2yyn_A Transcription intermedi 73.9 0.25 8.5E-06 46.5 -2.9 54 39-97 49-104 (135)
73 3q2e_A Bromodomain and WD repe 73.2 0.21 7.1E-06 46.2 -3.6 50 38-92 39-88 (123)
74 3ryc_E Stathmin-4; alpha-tubul 72.1 8.9 0.00031 36.5 7.2 38 647-684 48-85 (143)
75 3dai_A ATPase family AAA domai 71.1 0.31 1.1E-05 45.4 -3.0 51 38-93 39-89 (130)
76 3o36_A Transcription intermedi 55.2 0.99 3.4E-05 44.3 -2.9 54 39-97 110-165 (184)
77 2i1j_A Moesin; FERM, coiled-co 49.6 13 0.00044 42.9 4.7 10 601-610 291-300 (575)
78 1f5n_A Interferon-induced guan 49.3 30 0.001 40.1 7.7 37 624-660 494-530 (592)
79 1ij5_A Plasmodial specific LAV 48.6 20 0.00068 37.8 5.7 13 645-657 40-52 (323)
80 3etw_A Adhesin A; antiparallel 47.7 1.3E+02 0.0044 27.8 10.1 30 633-662 15-44 (119)
81 4f6r_C Stathmin-like domain R1 47.7 34 0.0012 29.9 5.9 33 646-678 46-78 (87)
82 1lsh_B Lipovitellin (LV-2); vi 46.0 4.3 0.00015 43.6 0.0 13 741-753 294-306 (319)
83 1kil_E Complexin I snare-compl 45.0 43 0.0015 26.0 5.3 16 670-685 29-44 (49)
84 3rk3_E Complexin-1; snare prot 44.4 65 0.0022 26.1 6.6 15 671-685 33-47 (63)
85 3v6i_A V-type ATP synthase sub 42.5 1.4E+02 0.0048 28.8 10.4 13 678-690 84-96 (187)
86 1lsh_B Lipovitellin (LV-2); vi 38.5 6.6 0.00022 42.2 0.0 8 742-749 246-253 (319)
87 2b5u_A Colicin E3; high resolu 38.4 39 0.0013 38.1 6.0 7 625-631 292-298 (551)
88 3u5n_A E3 ubiquitin-protein li 37.7 1.6 5.5E-05 43.7 -4.7 49 39-92 110-161 (207)
89 2ro1_A Transcription intermedi 34.0 3.1 0.00011 41.2 -3.2 47 39-90 102-153 (189)
90 2p4v_A Transcription elongatio 31.6 54 0.0018 31.4 5.2 66 627-696 12-77 (158)
91 1go4_E MAD1 (mitotic arrest de 26.1 2.2E+02 0.0075 25.5 7.7 26 627-652 15-43 (100)
92 4f61_I Stathmin-like domain R4 25.2 2.1E+02 0.0071 29.4 8.3 42 644-685 146-187 (240)
93 2eqb_B RAB guanine nucleotide 24.6 2.8E+02 0.0094 24.7 8.0 36 627-662 8-46 (97)
94 4f61_I Stathmin-like domain R4 24.4 1.1E+02 0.0039 31.3 6.2 13 651-663 51-63 (240)
95 3adg_A F21M12.9 protein; HYL1, 23.4 45 0.0015 27.4 2.6 8 679-686 63-70 (73)
96 2zuo_A MVP, major vault protei 23.3 2.2E+02 0.0074 34.3 9.1 24 594-617 647-672 (861)
97 2i1j_A Moesin; FERM, coiled-co 22.8 56 0.0019 37.6 4.1 20 674-693 383-402 (575)
98 4abm_A Charged multivesicular 22.6 3.2E+02 0.011 23.2 7.8 62 629-690 11-74 (79)
99 1ij5_A Plasmodial specific LAV 21.8 1.3E+02 0.0046 31.3 6.6 35 629-663 46-80 (323)
100 2b7v_A Double-stranded RNA-spe 20.1 66 0.0022 26.2 3.0 18 672-689 51-68 (71)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.94 E-value=1.8e-27 Score=225.64 Aligned_cols=105 Identities=42% Similarity=0.790 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 004033 202 NAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~---s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (778)
....++.|..||..|+.++. +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46678999999999999875 899999999998889999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 279 MTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 279 ~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
++||+++|.||.+|..|+++|++.|+.|
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999875
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=4.9e-27 Score=218.52 Aligned_cols=103 Identities=39% Similarity=0.697 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
...++.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
+++|.||.+|..|+++|++.|+++-
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
No 3
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.94 E-value=3.9e-27 Score=222.55 Aligned_cols=105 Identities=37% Similarity=0.688 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...|..||..|++|+.+|+|..|||+.++.+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|++||.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998765
No 4
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=6.1e-27 Score=230.76 Aligned_cols=110 Identities=33% Similarity=0.525 Sum_probs=100.0
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 004033 198 ASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 198 ~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (778)
..+....|.+.|..||..|++|+.+|+|..||++.++.+||||+||++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 15 ~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 15 YFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|++||+++|.||.+|..|+++|++.|+.+.
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 95 CSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999998763
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=8.9e-27 Score=215.28 Aligned_cols=104 Identities=33% Similarity=0.566 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...|...|..||..|++|+.+++|..||++. .+||||+||++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|+++|.+|.+|..|++.|++.|+++.
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998763
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=9.8e-27 Score=226.67 Aligned_cols=107 Identities=36% Similarity=0.636 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
....+...|..||+.|++|+.+|+|..||++.++++||||+||++||||+||++||+++.|.++.+|.+||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44778888999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
||++++.||.+|..|+++|++.|+.+.
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998764
No 7
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=1.9e-26 Score=215.13 Aligned_cols=109 Identities=35% Similarity=0.542 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHHHHHHc-CCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 004033 201 SNAMLMKQCENLLTRLMS-HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (778)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~-~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (778)
...++.+.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 347899999999999998 7899999999999877899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 280 TYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 280 ~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
+||+++|.||.+|..|++.|++.|..+...
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.93 E-value=5.6e-27 Score=219.07 Aligned_cols=107 Identities=42% Similarity=0.775 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 004033 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~---s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (778)
....+++.|..||..|++++. +|+|..||++..+++||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999987 99999999999777999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|++||+++|.||.+|..|++.|++.|+.+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999998653
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=215.26 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..+...|..||..|++|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457799999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
+++|.+|.+|..|++.|+..|..+...+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 10
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=2.7e-26 Score=215.57 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
...+.+.|..||+.|++|+ .+|+|.+||+.. .+||||+||++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4788999999999999986 589999999854 89999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 276 ~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
.||++||+++|.||.+|..|+++|++.|+.+
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988754
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=216.14 Aligned_cols=108 Identities=34% Similarity=0.640 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...|.+.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3669999999999999999999999999977 89999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004033 282 NPP-QNDVHIMADTLRKYFEVRWKAIEKKLP 311 (778)
Q Consensus 282 N~~-gS~V~~~A~~L~~~Fe~~~k~i~~k~p 311 (778)
|++ +|.||.+|..|+++|++.|+.+...+.
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 999999999999999999999977664
No 12
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=219.57 Aligned_cols=107 Identities=32% Similarity=0.599 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...|.+.|..||..|++|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999975 89999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 282 NPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 282 N~~-gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
|++ +|.||.+|..|+++|++.|..+...+
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999876544
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=2.4e-26 Score=215.37 Aligned_cols=102 Identities=35% Similarity=0.596 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 004033 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (778)
+...|..||..|++|+.+|+|..||++. .+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3689999999999999999999999976 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q 004033 285 QNDVHIMADTLRKYFEVRWKAIEK 308 (778)
Q Consensus 285 gS~V~~~A~~L~~~Fe~~~k~i~~ 308 (778)
+|.||.+|..|++.|++.|+.|..
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999987643
No 14
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=5.1e-26 Score=215.41 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHcCC-------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 004033 202 NAMLMKQCENLLTRLMSHQ-------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~-------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLI 274 (778)
...+.+.|..||+.|++++ .+++|..||+.. .+||||+||++||||+||++||.+|.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4789999999999999885 589999999854 8999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 275 f~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
|+||++||+++|.||.+|..|+++|++.|+.|...
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999998754
No 15
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=211.70 Aligned_cols=103 Identities=27% Similarity=0.342 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+.+.|..||..|++++.+++|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999964 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|++||.+|.+|..|++.|++.|...
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 16
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=6.1e-26 Score=216.50 Aligned_cols=105 Identities=37% Similarity=0.672 Sum_probs=99.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhh
Q 004033 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~--~~Y~s~~eF~~DvrLIf~N 277 (778)
.+....++.|..||..|++|+.+|+|..||+. .+||||+||++||||+||++||.+ +.|.++.+|.+||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999986 599999999999999999999998 5999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|++||+++|.||.+|..|+++|++.|+++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999874
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.93 E-value=5.2e-26 Score=211.32 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..+.+.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 447899999999999999999999999977 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKA 305 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~ 305 (778)
+++|.||.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998864
No 18
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.93 E-value=2.4e-26 Score=242.03 Aligned_cols=198 Identities=22% Similarity=0.332 Sum_probs=152.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
.+|||+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |.+||-|.-.|. .--+.|..-+...+
T Consensus 43 ~~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~~~ 111 (265)
T 3uv5_A 43 VVKDYYKIITRPMDLQ--TLRENVRKRLYPSREEFREHLELIVKN---SATYNGPKHSLT------QISQSMLDLCDEKL 111 (265)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH------HHHHHHHHHHHHHH
T ss_pred hcCCHHHHhCCCCcHH--HHHHHHHcCCCCCHHHHHHHHHHHHhh---hhhcCCCCChHH------HHHHHHHHHHHHHH
Confidence 4899999999999887 899999999999988887777777666 889998765554 12233444444333
Q ss_pred HHHHHHHHHhhhcccCcccCCCccccccCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004033 118 EQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGA 197 (778)
Q Consensus 118 eqvR~l~kki~~~~~~~~lsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~~~~kr~~~~r~~p~k~~~~ 197 (778)
.++..-..+++..- .|. ..
T Consensus 112 ~~~~~~~~~~ek~i-----~p~----------------------------------~d---------------------- 130 (265)
T 3uv5_A 112 KEKEDKLARLEKAI-----NPL----------------------------------LD---------------------- 130 (265)
T ss_dssp HHTHHHHHHHHHHH-----STT----------------------------------TT----------------------
T ss_pred HHHhhhhhhhhhhh-----hhc----------------------------------cc----------------------
Confidence 33322222221110 000 00
Q ss_pred CCCchHHHHHHHHHHHHH-HHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 198 ASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 198 ~~~~~~~~~k~c~~IL~~-L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
......+...|..|+.. |+.|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 131 -d~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~ 207 (265)
T 3uv5_A 131 -DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 207 (265)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 00123455566666654 78899999999999976 799999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
||++||+++|.||.+|..|+..|+..|+.+...+
T Consensus 208 Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 208 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=5.4e-26 Score=213.73 Aligned_cols=103 Identities=23% Similarity=0.406 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHc------CCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 203 AMLMKQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~------~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
..+.+.|..||+.|++ |+.+++|..||+.. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999998 55679999999855 899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
||++||+++|.||.+|..|+++|++.|+++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=1.4e-25 Score=209.69 Aligned_cols=108 Identities=32% Similarity=0.471 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 202 NAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
...|.+.|..|++.|++++. +++|..||+.. .+||||+||++||||+||++||.+|.|.++.+|..||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 47789999999999999876 99999999854 89999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004033 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (778)
Q Consensus 276 ~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k~p 311 (778)
.||++||++||.||.+|..|+++|++.|++|+...+
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~~ 119 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999986543
No 21
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=212.51 Aligned_cols=107 Identities=26% Similarity=0.420 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
|+++|.+|.+|..|++.|+..|+.+...+
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876543
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=209.30 Aligned_cols=104 Identities=24% Similarity=0.367 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
..+++.|..|++.|++++ .+++|..||+.. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 81 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFN 81 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999984 599999999854 899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~ 308 (778)
||++||+++|.||.+|..|+++|++.|+++..
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998864
No 23
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=208.53 Aligned_cols=102 Identities=31% Similarity=0.395 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..+...|..||..|++++.+++|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
+++|.||.+|..|++.|++.|.+.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=209.42 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
...+.+.|..|++.|+++. .+|+|.+||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3678899999999999975 499999999966 89999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 276 ~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
.||++||+++|.||.+|..|+++|++.|+++..++
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887654
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=208.44 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 004033 202 NAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (778)
...+..+|..|++.|.++.. +++|.+||+.. .+||||+||++||||+||++||+++.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 47789999999999998754 99999999855 99999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 276 ~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
.||++||+++|.||.+|..|++.|++.|+.+...
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998754
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=1.8e-24 Score=211.53 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHH-HHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 203 AMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 203 ~~~~k~c~~IL~~-L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
..+...+..|+.. |+.++.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|..||+|||.||++|
T Consensus 28 ~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~y 105 (158)
T 3uv4_A 28 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 105 (158)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555544 66789999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
|+++|.||.+|..|.+.|+..|+.+...+
T Consensus 106 N~~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 106 NGPESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887655
No 27
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=2.8e-25 Score=237.06 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=143.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
.+|||+.+|..||+.. ++-.|+++..|.+-.....+-+.|--| |.+||-+.-.+.. -.+.|...+...+
T Consensus 76 ~~pdY~~iIk~PmDL~--tIk~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~~------~A~~L~~~~~~~~ 144 (292)
T 3aad_A 76 VVKDYYKIITRPMDLQ--TLRENVRKRLYPSREEFREHLELIVKN---SATYNGPKHSLTQ------ISQSMLDLCDEKL 144 (292)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHTCSSSHHHH------HHTHHHHTTTTTG
T ss_pred hcccHHHHcCCcCCHH--HHHHHhhCCCcCCHHHHHHHHHHHHHH---HHHHcCCchHHHH------HHHHHHHHHHhhh
Confidence 4799999999999888 899999999999988887777777666 8899987654430 1111211111111
Q ss_pred HHHHHHHHHhhhcccCcccCCCccccccCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004033 118 EQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGA 197 (778)
Q Consensus 118 eqvR~l~kki~~~~~~~~lsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~~~~kr~~~~r~~p~k~~~~ 197 (778)
.+.+.-..+++. . ++|. ..
T Consensus 145 ~~~~~~~~~~e~-~----i~Pl----------------------------------~d---------------------- 163 (292)
T 3aad_A 145 KEKEDKLARLEK-A----INPL----------------------------------LD---------------------- 163 (292)
T ss_dssp GGSHHHHHHHHH-T----TSSS----------------------------------TT----------------------
T ss_pred hcchhhhhhhhh-c----cccc----------------------------------cc----------------------
Confidence 111110011100 0 0000 00
Q ss_pred CCCchHHHHHHHHHHH-HHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 198 ASSSNAMLMKQCENLL-TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 198 ~~~~~~~~~k~c~~IL-~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
......+...+..++ ..|+.|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 164 -d~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~ 240 (292)
T 3aad_A 164 -DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 240 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred -cchhHHHHHHHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 000012233344444 4578899999999999965 899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
||++||+++|.||.+|..|++.|+..|..+..++
T Consensus 241 Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~l 274 (292)
T 3aad_A 241 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 274 (292)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 28
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=1.5e-24 Score=214.55 Aligned_cols=104 Identities=31% Similarity=0.547 Sum_probs=99.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
+....++.|..||..|++|+.+++|..||++. .+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
||+++|.||.+|..|+++|++.|+.|
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765
No 29
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.90 E-value=2.4e-24 Score=236.11 Aligned_cols=87 Identities=30% Similarity=0.476 Sum_probs=83.4
Q ss_pred cCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Q 004033 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (778)
Q Consensus 218 ~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~ 297 (778)
.|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 227 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 227 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SSCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 367899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004033 298 YFEVRWKAI 306 (778)
Q Consensus 298 ~Fe~~~k~i 306 (778)
+|+..|+.+
T Consensus 305 ~f~~~~~~~ 313 (361)
T 2r10_A 305 YFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 30
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.90 E-value=1.2e-23 Score=210.03 Aligned_cols=104 Identities=38% Similarity=0.687 Sum_probs=98.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhh
Q 004033 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~--~~Y~s~~eF~~DvrLIf~N 277 (778)
.+...+++.|..||..|+.|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999985 499999999999999999999998 7999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
|++||+++|.||.+|..|+++|++.|+++
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876
No 31
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.89 E-value=2.4e-24 Score=231.64 Aligned_cols=87 Identities=30% Similarity=0.476 Sum_probs=83.4
Q ss_pred cCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Q 004033 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (778)
Q Consensus 218 ~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gS~V~~~A~~L~~ 297 (778)
.|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004033 298 YFEVRWKAI 306 (778)
Q Consensus 298 ~Fe~~~k~i 306 (778)
+|+..|+.+
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 32
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=204.21 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCC-------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 004033 205 LMKQCENLLTRLMSHQF-------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (778)
Q Consensus 205 ~~k~c~~IL~~L~~~~~-------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (778)
...+|..|+..|+++.. +++|..||+.. .+||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46788888888888654 89999998854 8999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 278 A~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|++||+++|.||.+|..|+++|++.|+++.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999875
No 33
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=2.2e-23 Score=197.55 Aligned_cols=101 Identities=35% Similarity=0.411 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...|..++..|+.|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999977 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q 004033 282 NPPQNDV----HIMADTLRKYFEVRWK 304 (778)
Q Consensus 282 N~~gS~V----~~~A~~L~~~Fe~~~k 304 (778)
|+++|++ |.+|..|++.|...++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 7888888888887775
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.88 E-value=4.5e-23 Score=207.19 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=94.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHh
Q 004033 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIK--HPMDLGTIKCKITSG---QYSDPLAFAADVRLT 274 (778)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk--~PMDL~TIkkKL~~~---~Y~s~~eF~~DvrLI 274 (778)
.+....++.|..||..|+.|+.+|+|++||+ |+||.||+ +||||+||++||+++ .|.++.+|++||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 3456678899999999999999999999998 67999998 899999999999999 999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 275 f~NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
|+||++|| +++.||.+|..|+++|+++|+++.
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 589999999999999999999874
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=9.3e-23 Score=214.74 Aligned_cols=106 Identities=25% Similarity=0.464 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 004033 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (778)
..|...|..||..|++|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|..||+|||+||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 578999999999999999999999999977 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004033 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (778)
Q Consensus 283 ~~gS~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (778)
+++|.||.+|..|.+.|++.|+.+..++
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999876543
No 36
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=191.53 Aligned_cols=97 Identities=31% Similarity=0.430 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 004033 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (778)
....+...|..||+.|++|+.+|+|..| +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999997 899999999999999999999999999999999999999999999
Q ss_pred cCCCCCH----HHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQND----VHIMADTLRKYFEVRWK 304 (778)
Q Consensus 281 YN~~gS~----V~~~A~~L~~~Fe~~~k 304 (778)
||+++|+ ||.+|..|++.|...++
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57899999999987764
No 37
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.87 E-value=1.6e-22 Score=205.70 Aligned_cols=104 Identities=36% Similarity=0.637 Sum_probs=99.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhh
Q 004033 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~---~~Y~s~~eF~~DvrLIf~ 276 (778)
.+...+++.|..||..|++|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~ 153 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFK 153 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHH
Confidence 35578899999999999999999999999985 599999999999999999999997 799999999999999999
Q ss_pred hhcccCC-----------------CCCHHHHHHHHHHHHHHHHHHHH
Q 004033 277 NAMTYNP-----------------PQNDVHIMADTLRKYFEVRWKAI 306 (778)
Q Consensus 277 NA~~YN~-----------------~gS~V~~~A~~L~~~Fe~~~k~i 306 (778)
||++||+ +++.|+.+|..|+.+|+++|+.+
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999987
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=214.16 Aligned_cols=105 Identities=23% Similarity=0.438 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...|..||+.|++|+.+|+|..||++. .+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAIEK 308 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i~~ 308 (778)
|+++|.||.+|..|.++|++.|+.+..
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchh
Confidence 999999999999999999988876544
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.78 E-value=2.2e-19 Score=196.85 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcC--CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhhhcc
Q 004033 204 MLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAMT 280 (778)
Q Consensus 204 ~~~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~~ 280 (778)
.+...|..+|+.|.+. ..+++|..||+. ..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~--~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCc--ccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 3567899999999764 458999999985 48999999999999999999998 5555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 281 YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
||++||.||.+|..|+++|+..|.+..
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998753
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.75 E-value=6.4e-19 Score=189.46 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHcC--CCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhhhc
Q 004033 203 AMLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAM 279 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~ 279 (778)
..|...|..+|..+... ..+++|.+||+. ..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~--~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCc--ccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 34667777777777654 468999999884 48999999999999999999998 5565 89999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004033 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (778)
Q Consensus 280 ~YN~~gS~V~~~A~~L~~~Fe~~~k~i~ 307 (778)
+||++||.||.+|..|+++|++.|.+..
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998763
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=156.31 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 004033 203 AMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (778)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (778)
..+...+..|+..+++|.+ +.+|.+.++ +. |+||. ++||+|.+|++||.+|.|+++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPs--k~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPA--VD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCS--SC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCC--CC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4577889999999999853 678998543 43 89998 999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004033 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (778)
Q Consensus 277 NA~~YN~~gS~V~~~A~~L~~~Fe~~~k~i~~k 309 (778)
||++||.+||+||.+|..|+++|...+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998765
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=3.7e-15 Score=132.70 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=67.8
Q ss_pred cccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhcc-C-CCCCCCcEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 004033 351 KAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHS-A-GETGEDELEIDIDALSDDTLFALRKLLDDYLLEK 425 (778)
Q Consensus 351 ~~e~~kr~mT~eEK~kLs~~I~~Lp~e~l~~Iv~IIk~~~-~-~~~~~dEIEIDId~L~~~TL~eL~~~V~~~l~ek 425 (778)
..++.+++||++||++|+.+|+.||++++.+||+||++++ . ....++||||||+.|++.|||+|++||.+||+.+
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3456679999999999999999999999999999999998 3 3357899999999999999999999999998765
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.42 E-value=1.9e-13 Score=136.51 Aligned_cols=98 Identities=18% Similarity=0.282 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 004033 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (778)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (778)
...+...+..||..|..|+.+++|+.. .++.||||.||++||+.|.|.++.+|..||.|||+||..|
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 356677889999999999999999862 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004033 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKLPV 312 (778)
Q Consensus 282 N~~gS~V~~~A~~L~~~Fe~~~k~i~~k~p~ 312 (778)
|.+.+.+..++..|+.+|++.++.+-..++.
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 9999999999999999999999888655543
No 44
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.68 E-value=0.0067 Score=56.30 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=65.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
-+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |.+||-+.-.+. ...+.|++.....|
T Consensus 36 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~l 104 (121)
T 2d9e_A 36 EVPDYLDHIKKPMDFF--TMKQNLEAYRYLNFDDFEEDFNLIVSN---CLKYNAKDTIFY------RAAVRLREQGGAVL 104 (121)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHH
T ss_pred ccCCHHHHcCCCcCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999888 899999999999988887777777666 889998865544 45677888888888
Q ss_pred HHHHHHHHHhhh
Q 004033 118 EQVRVLQKKVAS 129 (778)
Q Consensus 118 eqvR~l~kki~~ 129 (778)
+++|...++...
T Consensus 105 ~~~~~~~~~~~~ 116 (121)
T 2d9e_A 105 RQARRQAEKMGS 116 (121)
T ss_dssp HHHHHHHHHTSB
T ss_pred HHHHHHHHHcCC
Confidence 888877766533
No 45
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=92.40 E-value=0.18 Score=46.74 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhhcc-cChHHHHHHHhhccCCCCCCCcEEEecCCCCHHHHHHHHHHHH
Q 004033 360 TNEEKRILSTELEALLE-ELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLD 419 (778)
Q Consensus 360 T~eEK~kLs~~I~~Lp~-e~l~~Iv~IIk~~~~~~~~~dEIEIDId~L~~~TL~eL~~~V~ 419 (778)
-.+|-+.|...|..|.. +.+.+||++|.+.-.+...+..+.||+-+||..|+++|+.|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTSCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 46778899999999987 6699999999988788888999999999999999999999863
No 46
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.44 E-value=0.013 Score=54.42 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLe 118 (778)
+|||+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |.+||-+.-.+. +....|+
T Consensus 49 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~--------------~~A~~L~ 109 (123)
T 2dat_A 49 LPEYYELIRKPVDFK--KIKERIRNHKYRSLGDLEKDVMLLCHN---AQTFNLEGSQIY--------------EDSIVLQ 109 (123)
T ss_dssp SCHHHHHCSSCCCHH--HHHHHHTTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH--------------HHHHHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH--------------HHHHHHH
Confidence 699999999999888 899999999999998887777766666 899998875555 5555555
Q ss_pred HHHHHHHHhhhcc
Q 004033 119 QVRVLQKKVASLS 131 (778)
Q Consensus 119 qvR~l~kki~~~~ 131 (778)
+.+.+++..++
T Consensus 110 --~~f~~~~~~~p 120 (123)
T 2dat_A 110 --SVFKSARQSGP 120 (123)
T ss_dssp --HHHHHHHHSSS
T ss_pred --HHHHHHHHHcC
Confidence 45555555544
No 47
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=90.45 E-value=0.028 Score=52.84 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=65.6
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLe 118 (778)
+|||+.+|..||+.. ++-.|++++.|.+-+.-..+-+.|--| |.+||-+.-.+. ...+.|+..+...++
T Consensus 43 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~~~ 111 (135)
T 3rcw_A 43 VPDYLDHIKHPMDFA--TMRKRLEAQGYKNLHEFEEDFDLIIDN---CMKYNARDTVFY------RAAVRLRDQGGVVLR 111 (135)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHHH
T ss_pred cCCHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 799999999999887 899999999999988887777776666 889997765554 455678888888888
Q ss_pred HHHHHHHHhhhcccCc
Q 004033 119 QVRVLQKKVASLSSNV 134 (778)
Q Consensus 119 qvR~l~kki~~~~~~~ 134 (778)
++|.-..++..-...|
T Consensus 112 ~~~~~~~~~~~~~~~~ 127 (135)
T 3rcw_A 112 QARREVDSIGLEEASG 127 (135)
T ss_dssp HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHccCCcCCC
Confidence 7777766665444433
No 48
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=89.21 E-value=0.021 Score=52.97 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
-+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |.+||-|.-.+. ...+.|.......+
T Consensus 42 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~~ 110 (123)
T 3hme_A 42 IAPGYSMIIKHPMDFG--TMKDKIVANEYKSVTEFKADFKLMCDN---AMTYNRPDTVYY------KLAKKILHAGFKMM 110 (123)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHT
T ss_pred hccCHHHHCCCCCCHH--HHHHHhccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999888 899999999999988887777777666 889998876555 34556666666666
Q ss_pred HHHHHH
Q 004033 118 EQVRVL 123 (778)
Q Consensus 118 eqvR~l 123 (778)
++.|.+
T Consensus 111 ~~~~~~ 116 (123)
T 3hme_A 111 SKERLL 116 (123)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 665554
No 49
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=89.19 E-value=0.027 Score=54.37 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=60.1
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLe 118 (778)
+|||+.+|..||+.. ++..|+++.+|.+-+....+-+.|--| |.+||-+.-.|. +....|+
T Consensus 64 ~PdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Lif~N---a~~YN~~~s~i~--------------~~A~~L~ 124 (154)
T 4alg_A 64 LPDYHKIIKQPMDMG--TIKRRLENNYYWAASECMQDFNTMFTN---CYIYNKPTDDIV--------------LMAQTLE 124 (154)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH--------------HHHHHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH--------------HHHHHHH
Confidence 799999999999887 899999999999998888777777666 899998876655 6677777
Q ss_pred HHHHHHHHhhhccc
Q 004033 119 QVRVLQKKVASLSS 132 (778)
Q Consensus 119 qvR~l~kki~~~~~ 132 (778)
+.+.+++..++.
T Consensus 125 --~~f~~~~~~l~~ 136 (154)
T 4alg_A 125 --KIFLQKVASMPQ 136 (154)
T ss_dssp --HHHHHHHTTSCS
T ss_pred --HHHHHHHHHCCc
Confidence 667777766554
No 50
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=89.12 E-value=0.023 Score=53.05 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
-+|||+.+|..||+.+ ++..|+++..|.+.+.-..+-+.|--| |.+||-+.-.+. +....|
T Consensus 52 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~--------------~~A~~L 112 (127)
T 2oss_A 52 NLPDYYKIIKTPMDMG--TIKKRLENNYYWNAQECIQDFNTMFTN---CYIYNKPGDDIV--------------LMAEAL 112 (127)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTCHHH--------------HHHHHH
T ss_pred cCccHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH--------------HHHHHH
Confidence 3799999999999888 899999999999988887777777666 889998875555 566666
Q ss_pred HHHHHHHHHhhhcc
Q 004033 118 EQVRVLQKKVASLS 131 (778)
Q Consensus 118 eqvR~l~kki~~~~ 131 (778)
+ +.+.+++..++
T Consensus 113 ~--~~f~~~~~~lp 124 (127)
T 2oss_A 113 E--KLFLQKINELP 124 (127)
T ss_dssp H--HHHHHHHTTCC
T ss_pred H--HHHHHHHHHCC
Confidence 6 55666665433
No 51
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=88.70 E-value=0.026 Score=52.92 Aligned_cols=54 Identities=7% Similarity=0.143 Sum_probs=46.4
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.+ ++..|+++..|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 57 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~i~ 110 (130)
T 2ouo_A 57 LHDYCDIIKHPMDMS--TIKSKLEAREYRDAQEFGADVRLMFSN---CYKYNPPDHEVV 110 (130)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCcHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHcCCCCHHH
Confidence 699999999999888 899999999999988887777777666 899998875555
No 52
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=87.35 E-value=0.035 Score=51.34 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 42 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~ 96 (121)
T 1e6i_A 42 EVPDYYDFIKEPMDLS--TMEIKLESNKYQKMEDFIYDARLVFNN---CRMYNGENTSYY 96 (121)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred hCcCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999888 899999999999988887777776666 889998875554
No 53
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=87.18 E-value=0.045 Score=53.14 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eL 117 (778)
.+|+|+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |.+||-|.-.|. ...+.|...+...|
T Consensus 59 ~~PdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~------~~A~~L~~~~~~~l 127 (158)
T 3uv4_A 59 FVPDYYKVIVNPMDLE--TIRKNISKHKYQSRESFLDDVNLILAN---SVKYNGPESQYT------KTAQEIVNVCYQTL 127 (158)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH------HHHHHHHHHHHHHH
T ss_pred hcccHHHHcCCccCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999887 899999999999988887777777666 889998765554 23445555555555
Q ss_pred HHHHHHHHHh
Q 004033 118 EQVRVLQKKV 127 (778)
Q Consensus 118 eqvR~l~kki 127 (778)
..++.-...+
T Consensus 128 ~e~~~~l~~l 137 (158)
T 3uv4_A 128 TEYDEHLTQL 137 (158)
T ss_dssp HHTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 54
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=86.67 E-value=0.04 Score=50.19 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=46.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 36 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~~s~~~ 90 (112)
T 3d7c_A 36 EAPDYYEVIRFPIDLK--TMTERLRSRYYVTRKLFVADLQRVIAN---CREYNPPDSEYC 90 (112)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cccCHHHHccCCcCHH--HHHHHHcCCCCcCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999888 899999999999988887776666656 889998765544
No 55
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=86.01 E-value=0.047 Score=50.26 Aligned_cols=72 Identities=10% Similarity=0.213 Sum_probs=57.0
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~s~~e~~~Lr~Rl~~eLe 118 (778)
+|||+.+|..||+.+ ++..|+++..|.+-+.-..+-+.|--| |.+||-+.-.+. +....|+
T Consensus 44 ~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~--------------~~A~~L~ 104 (120)
T 3jvl_A 44 LHDYCDIIKHPMDMS--TIKSKLESREYRDAQEFGADVRLMFSN---CYKYNPPDHEVV--------------AMARKLQ 104 (120)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH--------------HHHHHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH--------------HHHHHHH
Confidence 799999999999888 899999999999988887777777666 889998765555 5666666
Q ss_pred HHHHHHHHhhhcc
Q 004033 119 QVRVLQKKVASLS 131 (778)
Q Consensus 119 qvR~l~kki~~~~ 131 (778)
+.+.+++...+
T Consensus 105 --~~f~~~~~~~p 115 (120)
T 3jvl_A 105 --DVFEMRFAKMP 115 (120)
T ss_dssp --HHHHHHHTTCC
T ss_pred --HHHHHHHHHCc
Confidence 55666665544
No 56
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=84.75 E-value=0.076 Score=48.93 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=46.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|||+.+|..||+-+ ++..|++++.|.+-+.-..+-+.|--| |.+||-|.-.+.
T Consensus 37 ~~pdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Li~~N---a~~yN~~~s~i~ 91 (117)
T 2i7k_A 37 IAPGYSMIIKHPMDFS--TMKEKIKNNDYQSIEELKDNFKLMCTN---AMIYNKPETIYY 91 (117)
T ss_dssp TSSSHHHHCSCCCCHH--HHHHHHTTTSCCSHHHHHHHHHHHHHH---HHHTSCSSSSHH
T ss_pred ccCCHHHHhCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999888 899999999999988887777777666 899998875555
No 57
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=82.93 E-value=0.087 Score=48.38 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=45.3
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 44 ~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~ 97 (119)
T 3p1f_A 44 IPDYFDIVKNPMDLS--TIKRKLDTGQYQEPWQYVDDVWLMFNN---AWLYNRKTSRVY 97 (119)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999888 899999999999988887777776666 889997765444
No 58
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=82.12 E-value=0.079 Score=51.73 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |.+||-|.-.|.
T Consensus 52 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~ 106 (166)
T 3fkm_X 52 NCPDYYDVIKNPMSFS--CIKTKLKKGQYAYPSEFVKDVQLIFDN---CSLYNTSNSVVA 106 (166)
T ss_dssp -CCCGGGCCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHSSCTTSHHH
T ss_pred cCCCHHHhcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999887 899999999999988887777777666 889998865555
No 59
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=82.07 E-value=0.079 Score=49.53 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
.+|+|+.+|..||+.+ ++..|+++..|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 47 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~Li~~N---a~~yN~~~s~i~ 101 (129)
T 2grc_A 47 ELPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---AQTFNLEGSLIY 101 (129)
T ss_dssp TCHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999888 899999999999988887777776666 899998875555
No 60
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=81.90 E-value=0.052 Score=50.08 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|+|+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 44 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 97 (120)
T 3ljw_A 44 YPDYYAIIKEPIDLK--TIAQRIQNGSYKSIHAMAKDIDLLAKN---AKTYNEPGSQVF 97 (120)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCChHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999887 899999999999988887777777666 889998765555
No 61
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=81.61 E-value=0.067 Score=48.98 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=45.8
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 41 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 94 (116)
T 3iu5_A 41 QPDYYEVVSQPIDLM--KIQQKLKMEEYDDVNLLTADFQLLFNN---AKSYYKPDSPEY 94 (116)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHhCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 589999999999887 899999999999998887777777666 889997765444
No 62
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=80.85 E-value=0.077 Score=48.50 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |.+||-+.-.+.
T Consensus 46 ~pdY~~~I~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~ 99 (116)
T 3nxb_A 46 APNYYQIIKAPMDIS--SMEKKLNGGLYCTKEEFVNDMKTMFRN---CRKYNGESSEYT 99 (116)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH
T ss_pred ccChHHHcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999888 899999999999998888777777666 889997765544
No 63
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=80.82 E-value=3.6 Score=49.08 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhccccccccchHHHHHhhccccccC
Q 004033 677 REAARQALQMMEKTVDINENSRFMEDLEMLRIAQDEQL 714 (778)
Q Consensus 677 re~ar~al~~mekt~~~~~n~~~~~~le~l~~~~~~~~ 714 (778)
|+.+..++++.+.-++|+ ...|-.-++-||.-.+.-|
T Consensus 774 ~~~~ele~~k~~~la~ie-~~kf~~~v~aig~~ti~~i 810 (861)
T 2zuo_A 774 RAQLELEVSKAQQLANVE-AKKFKEMTEALGPGTIRDL 810 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCTTHHHHT
T ss_pred HHHHHhhHHHHHHHHHHH-HHHHHHHHHhhChHHHHHH
Confidence 455556667777777777 5555555555665444333
No 64
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=80.77 E-value=0.12 Score=48.01 Aligned_cols=54 Identities=7% Similarity=-0.022 Sum_probs=45.7
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |.+||-|.-.+.
T Consensus 45 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 98 (126)
T 3mqm_A 45 NADYYEKISDPLDLI--TIEKQILTGYYKTVEAFDADMLKVFRN---AEKYYGRKSPVG 98 (126)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHHHCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 599999999999887 899999999999988887777777666 889997765554
No 65
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=80.68 E-value=0.072 Score=49.98 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 53 ~PdY~~iIk~PMdL~--tI~~kL~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~ 106 (130)
T 3k2j_A 53 YPDYYQQIKMPISLQ--QIRTKLKNQEYETLDHLECDLNLMFEN---AKRYNVPNSAIY 106 (130)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CccHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999888 899999999999988887777777666 889998765444
No 66
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=79.62 E-value=0.091 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |.+||-|.-.+.
T Consensus 51 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~ 104 (124)
T 3mb4_A 51 LPDYYLTIKKPMDME--KIRSHMMANKYQDIDSMVEDFVMMFNN---ACTYNEPESLIY 104 (124)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999887 899999999999988887777777666 889998765555
No 67
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=79.56 E-value=0.14 Score=46.93 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 43 ~pdY~~~I~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~ 96 (117)
T 3g0l_A 43 VPGYKKVIKKPMDFS--TIREKLSSGQYPNLETFALDVRLVFDN---CETFNEDDSDIG 96 (117)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCSSSHHH
T ss_pred cCChHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999887 899999999999888887777777666 889997764444
No 68
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.09 E-value=0.041 Score=51.80 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=44.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccce
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQV 95 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v 95 (778)
+|||+.+|..||+.. ++..|+++..|.+.+.-..+-+.|--| |.+||-+.-.
T Consensus 37 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~~f~~D~~Li~~N---a~~yN~~~s~ 88 (131)
T 2dkw_A 37 VSDYLEVIKEPMDLS--TVITKIDKHNYLTAKDFLKDIDLICSN---ALEYNPDKDP 88 (131)
T ss_dssp CSSCTTSCSSCCCHH--HHHHHHHTTCCCSSHHHHHHHHHHHHH---HHHSCCCSST
T ss_pred CccHHhHcCCCcCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCh
Confidence 799999999999888 899999999999988887777777666 8899987643
No 69
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=78.99 E-value=0.12 Score=49.42 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=46.4
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |.+||-+.-.|.
T Consensus 61 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 114 (150)
T 3tlp_A 61 YPDYYKIILEPMDLK--IIEHNIRNDKYAGEEGMIEDMKLMFRN---ARHYNEEGSQVY 114 (150)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CcCHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999888 899999999999998887777777666 889998865555
No 70
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.58 E-value=0.12 Score=50.32 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=46.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCccceee
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
-+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| +.+||-+.-.|.
T Consensus 101 ~~pdY~~~I~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 155 (174)
T 2ri7_A 101 DAPDYYGVIKEPMDLA--TMEERVQRRYYEKLTEFVADMTKIFDN---CRYYNPSDSPFY 155 (174)
T ss_dssp TCHHHHHHCSSCCCHH--HHHHHHHTTCCCBHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCchHHHhCCcCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999888 899999999999988887777777666 788997765444
No 71
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=77.41 E-value=0.18 Score=47.38 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~ 92 (778)
-+|||+.+|..||+.+ ++-.|++++.|.+-+.-..+-..|--| |.+||-+
T Consensus 50 ~~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~ 99 (135)
T 3mb3_A 50 EYPDYRDIIDTPMDFA--TVRETLEAGNYESPMELCKDVRLIFSN---SKAYTPS 99 (135)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCC
T ss_pred hCCCHHHHhCCCcCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999887 899999999999988887777776666 8899976
No 72
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=73.91 E-value=0.25 Score=46.49 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=44.2
Q ss_pred CCchhHhhhcccccCCCCCcccccCc--cccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDTE--MTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~--~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|||+.+|..||+.. ++..|++++ .|.+.+.-..+-+.|--| |.+||-+.-.|.
T Consensus 49 ~pdY~~iIk~PmDL~--tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~ 104 (135)
T 2yyn_A 49 VPDYYKIIKNPMDLS--TIKKRLQEDYSMYSKPEDFVADFRLIFQN---CAEFNEPDSEVA 104 (135)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHSSSCCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhccccCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999888 899999984 788877777776766666 889998765554
No 73
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=73.24 E-value=0.21 Score=46.18 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=42.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~ 92 (778)
-+|||+.+|..||+.+ ++..|+++..|.+-+.-..+-+.|--| |..||-+
T Consensus 39 ~~pdY~~~I~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~ 88 (123)
T 3q2e_A 39 EYPDYRDIIDTPMDFG--TVRETLDAGNYDSPLEFCKDIRLIFSN---AKAYTPN 88 (123)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCC
T ss_pred hcCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999887 899999999999988877776666666 8889965
No 74
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=72.05 E-value=8.9 Score=36.50 Aligned_cols=38 Identities=42% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 647 LQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQAL 684 (778)
Q Consensus 647 l~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al 684 (778)
||....|||+.|+-.||+--.-+-.+||.++|..+.++
T Consensus 48 IqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~ 85 (143)
T 3ryc_E 48 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAI 85 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444555555444444
No 75
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=71.09 E-value=0.31 Score=45.45 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=43.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCCcccccccccCCCccccCCcc
Q 004033 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (778)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~ 93 (778)
-+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |.+||-+.
T Consensus 39 ~~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~ 89 (130)
T 3dai_A 39 EVPDYVTVIKQPMDLS--SVISKIDLHKYLTVKDYLRDIDLICSN---ALEYNPDR 89 (130)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHCCSS
T ss_pred hcCCHHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999887 899999999999988887777777666 88999775
No 76
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.21 E-value=0.99 Score=44.30 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCchhHhhhcccccCCCCCcccccC--ccccccccCCcccccccccCCCccccCCccceee
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDT--EMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~--~~~~s~~s~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (778)
+|+|+.+|..||+.. ++..|+++ ..|.+.+.-..+-+.|--| +.+||-+.-.|.
T Consensus 110 ~pdY~~iIk~PmdL~--tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~v~ 165 (184)
T 3o36_A 110 VPDYYKIIKNPMDLS--TIKKRLQEDYSMYSKPEDFVADFRLIFQN---CAEFNEPDSEVA 165 (184)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHSTTCSCCSHHHHHHHHHHHHHH---HHHHSCTTCHHH
T ss_pred CCchhhhcCCCCCHH--HHHHHHHhcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999888 89999998 4688877777666666666 778997654443
No 77
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.59 E-value=13 Score=42.93 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=5.8
Q ss_pred HhhchhhHHH
Q 004033 601 LLRNRFADTI 610 (778)
Q Consensus 601 ~lk~rfadti 610 (778)
.++.|=-|||
T Consensus 291 f~~~r~~d~~ 300 (575)
T 2i1j_A 291 YMRRRKPDTI 300 (575)
T ss_dssp HHHHTSCCCH
T ss_pred HHHccCCCcH
Confidence 3355666666
No 78
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.34 E-value=30 Score=40.13 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 624 RDPEKLRIEREELERRHREEKARLQAEAKAAEEARRK 660 (778)
Q Consensus 624 ~dp~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~ 660 (778)
+.-|-+++|.+.|+.+|++..+.++++-+-=++--++
T Consensus 494 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~q 530 (592)
T 1f5n_A 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777766555554443
No 79
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=48.61 E-value=20 Score=37.79 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 004033 645 ARLQAEAKAAEEA 657 (778)
Q Consensus 645 ~rl~a~~~aae~a 657 (778)
-|++++.+.++..
T Consensus 40 ~~~~~~~~~~~~~ 52 (323)
T 1ij5_A 40 DRLEAQIAQKEQE 52 (323)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 80
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=47.66 E-value=1.3e+02 Score=27.78 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 633 REELERRHREEKARLQAEAKAAEEARRKAE 662 (778)
Q Consensus 633 ~e~le~~q~eek~rl~a~~~aae~a~r~~e 662 (778)
-.++++..++|.+|+..+-+.||.|+++..
T Consensus 15 eae~q~L~~~E~qry~~eka~AE~A~~~La 44 (119)
T 3etw_A 15 DAEYQNLANQEEARFNEERAQADAARQALA 44 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999887644
No 81
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=47.65 E-value=34 Score=29.93 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 646 RLQAEAKAAEEARRKAEAEAAAEAKRKRELERE 678 (778)
Q Consensus 646 rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere 678 (778)
.||-...|||+.|+..||+--..+..+||.++|
T Consensus 46 eIqkKLeAAeERRks~EA~~L~~Laekreh~~E 78 (87)
T 4f6r_C 46 EIQKKLEAAEERRKAHFAAMLERLQEKDKHAEE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888887666666667777665
No 82
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=45.96 E-value=4.3 Score=43.59 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhhccccccCC
Q 004033 741 PLEQLGLYMKMDD 753 (778)
Q Consensus 741 ~le~lgl~~k~d~ 753 (778)
+-.+.-+.||.|+
T Consensus 294 ~e~kF~VL~Kk~~ 306 (319)
T 1lsh_B 294 SRPPFIVLIKLDS 306 (319)
T ss_dssp -------------
T ss_pred CCceEEEEEeeCC
Confidence 3445555555543
No 83
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=45.01 E-value=43 Score=26.02 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004033 670 KRKRELEREAARQALQ 685 (778)
Q Consensus 670 ~~~re~ere~ar~al~ 685 (778)
-++.|.|||.-||.+.
T Consensus 29 h~kmE~eRE~mRq~IR 44 (49)
T 1kil_E 29 YAKMEAEREVMRQGIR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457888888888764
No 84
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=44.42 E-value=65 Score=26.11 Aligned_cols=15 Identities=53% Similarity=0.665 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004033 671 RKRELEREAARQALQ 685 (778)
Q Consensus 671 ~~re~ere~ar~al~ 685 (778)
++.|.|||.-||.+.
T Consensus 33 ~kME~ERE~mRQ~IR 47 (63)
T 3rk3_E 33 AKMEAEREAVRQGIR 47 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778888888764
No 85
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=42.50 E-value=1.4e+02 Score=28.75 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhh
Q 004033 678 EAARQALQMMEKT 690 (778)
Q Consensus 678 e~ar~al~~mekt 690 (778)
+.|+..|..|-++
T Consensus 84 ~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 84 RRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHGGGS
T ss_pred HHHHHHHHhhhCC
Confidence 4555555555543
No 86
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=38.54 E-value=6.6 Score=42.16 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=0.0
Q ss_pred hhhhcccc
Q 004033 742 LEQLGLYM 749 (778)
Q Consensus 742 le~lgl~~ 749 (778)
++++.-++
T Consensus 246 ~~~~~~~~ 253 (319)
T 1lsh_B 246 ASAFSGIV 253 (319)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 44443333
No 87
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.35 E-value=39 Score=38.09 Aligned_cols=7 Identities=14% Similarity=0.710 Sum_probs=2.7
Q ss_pred ChHHHHH
Q 004033 625 DPEKLRI 631 (778)
Q Consensus 625 dp~kl~~ 631 (778)
++.-|++
T Consensus 292 t~~elkq 298 (551)
T 2b5u_A 292 SPDQVKQ 298 (551)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4443333
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.69 E-value=1.6 Score=43.67 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=40.1
Q ss_pred CCchhHhhhcccccCCCCCcccccC---ccccccccCCcccccccccCCCccccCCc
Q 004033 39 VPDYRHAVETMAESEGFGSSGRVDT---EMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (778)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~---~~~~s~~s~~~~rk~i~~n~~~~~~f~v~ 92 (778)
+|+|+.+|..||+.. ++..|+++ ..|.+.+.-..+-+.|--| +.+||-+
T Consensus 110 ~pdY~~iIk~PmdL~--tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~ 161 (207)
T 3u5n_A 110 IPNYYKIIKKPMDLS--TVKKKLQKKHSQHYQIPDDFVADVRLIFKN---CERFNEM 161 (207)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHSTTSTTCCSSHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hccHhHHhCCccCHH--HHHHHHhcccCCCcCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 799999999999887 89999997 6788887777666666656 7788864
No 89
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=34.01 E-value=3.1 Score=41.18 Aligned_cols=47 Identities=6% Similarity=-0.027 Sum_probs=40.2
Q ss_pred CCchhHhhh--cccccCCCCCcccccCc---cccccccCCcccccccccCCCccccC
Q 004033 39 VPDYRHAVE--TMAESEGFGSSGRVDTE---MTASEDSCAPKRKCISLNIDGYDNFG 90 (778)
Q Consensus 39 ~p~y~~~~~--~~~~~~~~~~~~rv~~~---~~~s~~s~~~~rk~i~~n~~~~~~f~ 90 (778)
.|+|+.+|. +||+.+ ++..|+++. .|.+-+.-+.+-+.|--| +.+||
T Consensus 102 ~~~Yy~iIk~~~PMDL~--tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N---~~~yN 153 (189)
T 2ro1_A 102 TDSTFSLDQPGGTLDLT--LIRARLQEKLSPPYSSPQEFAQDVGRMFKQ---FNKLT 153 (189)
T ss_dssp CCTTCSSSCSSCCCCHH--HHHHHHHTSSSSCCSCHHHHHHHHHHHHHH---HHHHC
T ss_pred ChhhhccccCCCcccHH--HHHHHHhcCCCcccCCHHHHHHHHHHHHHH---HHHHC
Confidence 388999997 799887 899999999 899988888777777666 78899
No 90
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=31.58 E-value=54 Score=31.39 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 004033 627 EKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINEN 696 (778)
Q Consensus 627 ~kl~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~~mekt~~~~~n 696 (778)
+||+.|.+.|....|.+-+...++|++--+..--+|..|+. +++++.|+ .=..|++|=+.+.|...
T Consensus 12 ~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak--~~q~~~e~--rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 12 EKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNK--KRLREIDR--RVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHH--HHHHHHHH--HHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHH--HHHHHHHH--HHHHHHHHHhhCeecCC
Confidence 45666666665555554444444444433333334444442 23333333 33456655555555433
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.08 E-value=2.2e+02 Score=25.45 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERR---HREEKARLQAEAK 652 (778)
Q Consensus 627 ~kl~~e~e~le~~---q~eek~rl~a~~~ 652 (778)
.+|+++.+.|++- -+++++.|+++.-
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555543 2556666666653
No 92
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=25.25 E-value=2.1e+02 Score=29.37 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 644 KARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 685 (778)
Q Consensus 644 k~rl~a~~~aae~a~r~~e~~~~~~~~~~re~ere~ar~al~ 685 (778)
...|+....||++.|+-.|++-..-+..+||-|||-+..|++
T Consensus 146 ~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 146 KEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777766655555555555678888888666664
No 93
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.56 E-value=2.8e+02 Score=24.69 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004033 627 EKLRIEREELERRH---REEKARLQAEAKAAEEARRKAE 662 (778)
Q Consensus 627 ~kl~~e~e~le~~q---~eek~rl~a~~~aae~a~r~~e 662 (778)
++|+.+.-+|+.+- ..|.++|.++.......|..+|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE 46 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE 46 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555443 3455556555555555444443
No 94
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=24.37 E-value=1.1e+02 Score=31.32 Aligned_cols=13 Identities=54% Similarity=0.578 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 004033 651 AKAAEEARRKAEA 663 (778)
Q Consensus 651 ~~aae~a~r~~e~ 663 (778)
..|||+.|+-.||
T Consensus 51 LeAAEERRks~Ea 63 (240)
T 4f61_I 51 LEAAEERRKYQEA 63 (240)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3344444444333
No 95
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=23.40 E-value=45 Score=27.41 Aligned_cols=8 Identities=50% Similarity=0.401 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 004033 679 AARQALQM 686 (778)
Q Consensus 679 ~ar~al~~ 686 (778)
||+.||+.
T Consensus 63 AA~~al~~ 70 (73)
T 3adg_A 63 AAEVALRE 70 (73)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 96
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=23.26 E-value=2.2e+02 Score=34.29 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=14.1
Q ss_pred hHHHHHHHhhc-hhhH-HHHHHHHHH
Q 004033 594 DKLYRAALLRN-RFAD-TILKAREKA 617 (778)
Q Consensus 594 ~k~~raa~lk~-rfad-tilka~~k~ 617 (778)
+...|.+|=|+ ..|= .+-++||-+
T Consensus 647 Dqrtrd~LqkSVqlAiEItT~sqEa~ 672 (861)
T 2zuo_A 647 DQRTRDALQRSVQLAIEITTNSQEAA 672 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677777666 4443 344666643
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.76 E-value=56 Score=37.64 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 004033 674 ELEREAARQALQMMEKTVDI 693 (778)
Q Consensus 674 e~ere~ar~al~~mekt~~~ 693 (778)
+.++..|.++.+.|+.+..-
T Consensus 383 ~~~~~~~e~~~~~l~~~~~~ 402 (575)
T 2i1j_A 383 EQRQNELQAMMQRLEETKNM 402 (575)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555554433
No 98
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=22.59 E-value=3.2e+02 Score=23.17 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 004033 629 LRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKR--ELEREAARQALQMMEKT 690 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~~~~~~~~~~r--e~ere~ar~al~~mekt 690 (778)
|+..++-|+++|..=..+|..+...|.....+-...|-.-+|+|+ |.+.+.--..|.-||..
T Consensus 11 Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 11 LRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444566666666655566666666655542211112333344444 55444444555555543
No 99
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=21.76 E-value=1.3e+02 Score=31.35 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004033 629 LRIEREELERRHREEKARLQAEAKAAEEARRKAEA 663 (778)
Q Consensus 629 l~~e~e~le~~q~eek~rl~a~~~aae~a~r~~e~ 663 (778)
+.++.+|-++++.++-+|++-++.|.+.++|++++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (323)
T 1ij5_A 46 IAQKEQEQKAKLAEYDQKVQNEFDARERAEREREA 80 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhhHHHHHHHHh
Confidence 45667777788888888888888888877776664
No 100
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=20.13 E-value=66 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004033 672 KRELEREAARQALQMMEK 689 (778)
Q Consensus 672 ~re~ere~ar~al~~mek 689 (778)
|++.|..||+.||+.+..
T Consensus 51 KK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 51 KKLAKARAAQSALATVFN 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345556667777776654
Done!