Query 004034
Match_columns 778
No_of_seqs 380 out of 3051
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg4_A Acetyl-COA synthetase; 100.0 4E-103 1E-107 927.5 70.0 637 129-776 9-645 (652)
2 1ry2_A Acetyl-coenzyme A synth 100.0 2E-103 5E-108 931.3 61.2 637 128-775 10-660 (663)
3 3etc_A AMP-binding protein; ad 100.0 2.4E-83 8.1E-88 748.0 61.1 524 192-752 48-579 (580)
4 2vsq_A Surfactin synthetase su 100.0 6.5E-85 2.2E-89 826.4 42.4 572 103-752 382-960 (1304)
5 3ni2_A 4-coumarate:COA ligase; 100.0 6.8E-82 2.3E-86 730.0 54.8 505 201-751 23-534 (536)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 7.1E-82 2.4E-86 730.2 52.1 510 201-759 26-538 (539)
7 3c5e_A Acyl-coenzyme A synthet 100.0 1.1E-80 3.7E-85 724.4 58.6 519 192-752 30-562 (570)
8 3r44_A Fatty acyl COA syntheta 100.0 3.8E-81 1.3E-85 720.4 52.4 499 201-754 17-515 (517)
9 4fuq_A Malonyl COA synthetase; 100.0 4.8E-81 1.7E-85 717.1 52.7 496 204-752 4-500 (503)
10 3g7s_A Long-chain-fatty-acid-- 100.0 7.4E-82 2.5E-86 731.9 45.2 512 201-753 20-543 (549)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.3E-79 4.4E-84 705.7 57.3 492 201-751 3-503 (504)
12 3rg2_A Enterobactin synthase c 100.0 9.4E-80 3.2E-84 723.8 56.7 506 201-754 28-536 (617)
13 4dg8_A PA1221; ANL superfamily 100.0 1E-80 3.6E-85 730.1 48.2 480 201-754 28-515 (620)
14 2d1s_A Luciferase, luciferin 4 100.0 2.5E-79 8.4E-84 710.2 55.3 509 201-756 26-547 (548)
15 3o83_A Peptide arylation enzym 100.0 2.5E-80 8.4E-85 718.1 39.5 506 201-752 31-540 (544)
16 2v7b_A Benzoate-coenzyme A lig 100.0 1.3E-78 4.3E-83 701.8 52.3 508 196-748 20-528 (529)
17 1amu_A GRSA, gramicidin synthe 100.0 2E-79 7E-84 712.6 45.6 484 201-751 40-528 (563)
18 3fce_A D-alanine--poly(phospho 100.0 6.9E-79 2.4E-83 701.1 49.2 498 202-753 3-505 (512)
19 3tsy_A Fusion protein 4-coumar 100.0 5.1E-80 1.7E-84 762.8 42.2 566 125-753 8-583 (979)
20 1v25_A Long-chain-fatty-acid-C 100.0 1.1E-79 3.7E-84 712.3 41.6 507 201-754 19-538 (541)
21 4gr5_A Non-ribosomal peptide s 100.0 6.2E-80 2.1E-84 718.8 38.8 485 201-749 76-568 (570)
22 3e7w_A D-alanine--poly(phospho 100.0 3.2E-78 1.1E-82 695.4 52.5 495 202-753 3-504 (511)
23 3ivr_A Putative long-chain-fat 100.0 4E-79 1.4E-83 702.6 39.9 493 201-753 7-502 (509)
24 3rix_A Luciferase, luciferin 4 100.0 3.4E-79 1.2E-83 709.6 39.2 511 201-753 21-542 (550)
25 3l8c_A D-alanine--poly(phospho 100.0 5.9E-78 2E-82 694.9 46.0 498 201-753 5-513 (521)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 8.2E-78 2.8E-82 690.5 39.9 475 201-748 23-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 2.5E-76 8.6E-81 678.0 44.9 495 202-753 3-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 1.4E-75 4.7E-80 681.4 32.7 513 202-767 22-560 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 2.2E-74 7.4E-79 675.4 39.8 510 201-753 12-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.9E-73 9.9E-78 663.9 44.2 506 201-756 22-567 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.5E-59 5.3E-64 535.6 30.9 406 201-646 25-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.8E-54 9.6E-59 472.6 25.4 315 386-752 36-354 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.8E-49 9.5E-54 445.4 29.7 332 383-745 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.6E-48 8.9E-53 438.4 28.5 336 383-746 88-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 8.7E-48 3E-52 433.3 27.6 334 383-745 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.7E-30 1.9E-34 281.3 17.1 238 383-656 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 5.8E-16 2E-20 138.3 9.4 95 645-743 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 7.5E-15 2.6E-19 130.9 10.1 95 645-744 1-102 (109)
39 4eql_A 4-substituted benzoates 98.8 6.8E-08 2.3E-12 109.5 17.5 133 508-670 296-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.6 4.2E-07 1.4E-11 103.2 17.4 91 585-697 391-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.6 8.4E-07 2.9E-11 100.3 19.3 161 508-698 301-489 (581)
42 2jgp_A Tyrocidine synthetase 3 92.4 0.0088 3E-07 67.6 -3.7 58 104-163 460-517 (520)
43 4hvm_A Tlmii; PSI-biology, mid 89.2 0.033 1.1E-06 62.3 -2.8 59 103-164 408-469 (493)
44 2xhg_A Tyrocidine synthetase A 86.0 0.073 2.5E-06 58.8 -2.5 56 103-160 406-461 (466)
45 2y27_A Phenylacetate-coenzyme 85.8 3.5 0.00012 44.7 11.2 100 214-314 88-192 (437)
46 2y4o_A Phenylacetate-coenzyme 85.4 3.8 0.00013 44.6 11.2 100 214-314 90-194 (443)
47 3qov_A Phenylacetate-coenzyme 83.8 4.2 0.00014 44.2 10.6 98 216-314 86-188 (436)
48 1l5a_A Amide synthase, VIBH; n 80.0 0.16 5.4E-06 55.6 -2.9 55 108-163 361-418 (436)
49 3ivr_A Putative long-chain-fat 65.6 36 0.0012 37.4 12.1 96 385-494 19-116 (509)
50 3hgu_A EHPF; phenazine, antibi 64.5 12 0.00042 39.3 7.6 82 231-314 109-215 (369)
51 3g7s_A Long-chain-fatty-acid-- 64.3 87 0.003 34.7 15.1 106 385-497 32-140 (549)
52 3rix_A Luciferase, luciferin 4 61.7 22 0.00077 39.6 9.5 104 386-498 34-139 (550)
53 3dzz_A Putative pyridoxal 5'-p 58.6 1.7E+02 0.0058 30.1 17.1 89 254-350 106-201 (391)
54 3ipl_A 2-succinylbenzoate--COA 58.5 85 0.0029 34.2 13.5 97 213-313 160-260 (501)
55 1mdb_A 2,3-dihydroxybenzoate-A 57.9 87 0.003 34.6 13.5 97 214-314 180-282 (539)
56 3o83_A Peptide arylation enzym 57.2 78 0.0027 35.0 13.0 97 214-314 189-291 (544)
57 3c5e_A Acyl-coenzyme A synthet 55.9 43 0.0015 37.5 10.5 103 385-496 56-161 (570)
58 3r44_A Fatty acyl COA syntheta 55.1 86 0.0029 34.4 12.8 96 214-314 168-268 (517)
59 3t5a_A Long-chain-fatty-acid-- 54.2 1E+02 0.0035 33.1 13.1 109 385-498 37-149 (480)
60 2d1s_A Luciferase, luciferin 4 53.7 43 0.0015 37.3 10.0 96 216-313 192-292 (548)
61 1v25_A Long-chain-fatty-acid-C 52.6 62 0.0021 35.8 11.1 102 385-496 31-134 (541)
62 2cvi_A 75AA long hypothetical 52.4 28 0.00094 27.7 6.0 47 660-719 15-61 (83)
63 1ry2_A Acetyl-coenzyme A synth 51.1 71 0.0024 36.5 11.5 98 385-490 95-195 (663)
64 3ni2_A 4-coumarate:COA ligase; 51.1 65 0.0022 35.6 11.0 99 385-495 35-135 (536)
65 1pg4_A Acetyl-COA synthetase; 50.2 67 0.0023 36.6 11.1 97 385-489 89-187 (652)
66 3etc_A AMP-binding protein; ad 47.2 89 0.0031 35.0 11.4 96 385-489 69-166 (580)
67 1t5h_X 4-chlorobenzoyl COA lig 45.8 1.2E+02 0.0041 33.0 12.0 99 385-495 15-117 (504)
68 2zbc_A 83AA long hypothetical 44.9 37 0.0013 26.7 5.6 47 660-719 15-61 (83)
69 1amu_A GRSA, gramicidin synthe 44.6 1.1E+02 0.0037 34.0 11.5 97 385-495 52-150 (563)
70 3fce_A D-alanine--poly(phospho 44.5 72 0.0024 34.9 9.9 97 214-313 142-244 (512)
71 3e7w_A D-alanine--poly(phospho 42.5 1.1E+02 0.0039 33.3 11.1 97 214-313 141-243 (511)
72 2zzt_A Putative uncharacterize 42.2 91 0.0031 26.1 8.0 62 659-720 11-74 (107)
73 2y9j_Y Lipoprotein PRGK, prote 41.1 84 0.0029 29.1 8.1 69 659-729 89-165 (170)
74 2v7b_A Benzoate-coenzyme A lig 40.5 90 0.0031 34.3 9.9 97 385-495 36-134 (529)
75 3rg2_A Enterobactin synthase c 40.0 2.6E+02 0.009 31.2 14.0 96 214-313 182-283 (617)
76 1yj7_A ESCJ; mixed alpha/beta, 39.8 72 0.0025 29.6 7.4 69 660-731 92-163 (171)
77 3kxw_A Saframycin MX1 syntheta 38.7 1.3E+02 0.0043 33.5 10.9 105 385-496 24-130 (590)
78 4gs5_A Acyl-COA synthetase (AM 35.8 1.1E+02 0.0038 31.7 9.2 77 230-312 54-131 (358)
79 3nyq_A Malonyl-COA ligase; A/B 34.7 2E+02 0.0068 31.3 11.5 96 214-314 153-253 (505)
80 2djw_A Probable transcriptiona 33.5 45 0.0015 27.0 4.5 47 660-719 15-61 (92)
81 3l8a_A METC, putative aminotra 32.2 4.5E+02 0.015 27.3 15.4 89 254-350 140-235 (421)
82 3t18_A Aminotransferase class 31.7 3.8E+02 0.013 27.7 12.8 77 254-334 122-208 (413)
83 4fuq_A Malonyl COA synthetase; 31.6 1.4E+02 0.0049 32.4 9.7 81 406-491 28-110 (503)
84 3ri6_A O-acetylhomoserine sulf 31.6 1.8E+02 0.006 31.2 10.1 71 254-326 118-189 (430)
85 3euc_A Histidinol-phosphate am 31.1 4.3E+02 0.015 26.7 15.9 77 254-334 106-186 (367)
86 4dq6_A Putative pyridoxal phos 30.4 4.5E+02 0.015 26.7 15.0 75 254-334 111-193 (391)
87 2e7j_A SEP-tRNA:Cys-tRNA synth 30.4 2.9E+02 0.01 27.9 11.5 69 254-325 90-168 (371)
88 1eg5_A Aminotransferase; PLP-d 30.0 2.2E+02 0.0074 29.1 10.4 72 254-326 86-161 (384)
89 3tsy_A Fusion protein 4-coumar 30.0 2.2E+02 0.0074 34.1 11.5 97 384-492 73-171 (979)
90 3a2b_A Serine palmitoyltransfe 29.8 3.6E+02 0.012 27.7 12.2 69 254-326 124-195 (398)
91 3byp_A CZRB protein; membrane 29.7 1.6E+02 0.0053 23.7 7.3 62 659-720 11-76 (94)
92 3rq1_A Aminotransferase class 27.9 4.7E+02 0.016 27.1 12.8 77 254-334 123-209 (418)
93 3fdb_A Beta C-S lyase, putativ 27.3 4.2E+02 0.014 26.8 12.1 88 254-350 102-191 (377)
94 3isl_A Purine catabolism prote 27.2 2.7E+02 0.0092 28.8 10.6 72 254-326 83-158 (416)
95 1q9j_A PAPA5, polyketide synth 27.2 5.8 0.0002 42.5 -2.9 49 104-159 371-420 (422)
96 4gr5_A Non-ribosomal peptide s 26.7 2E+02 0.0068 31.9 9.8 92 385-490 88-181 (570)
97 3tbh_A O-acetyl serine sulfhyd 25.7 1.9E+02 0.0067 29.6 8.8 65 248-313 61-127 (334)
98 3kki_A CAI-1 autoinducer synth 25.0 3E+02 0.01 28.5 10.5 69 254-326 140-208 (409)
99 2bkw_A Alanine-glyoxylate amin 24.9 4E+02 0.014 27.0 11.3 71 255-326 84-159 (385)
100 3ndn_A O-succinylhomoserine su 24.4 3.5E+02 0.012 28.5 10.8 76 248-326 112-188 (414)
101 3ju7_A Putative PLP-dependent 24.4 1.4E+02 0.0048 31.2 7.6 61 248-311 69-136 (377)
102 3ijw_A Aminoglycoside N3-acety 24.2 1E+02 0.0035 30.8 5.9 25 243-267 18-42 (268)
103 1elu_A L-cysteine/L-cystine C- 23.9 1.9E+02 0.0064 29.7 8.5 76 249-325 93-175 (390)
104 1t3i_A Probable cysteine desul 23.9 2.2E+02 0.0076 29.5 9.2 71 254-325 115-190 (420)
105 4h1h_A LMO1638 protein; MCCF-l 23.6 1.9E+02 0.0066 29.7 8.2 62 253-314 8-88 (327)
106 3gqw_A Fatty acid AMP ligase; 22.3 3.2E+02 0.011 30.0 10.4 90 404-495 47-142 (576)
107 2z9v_A Aspartate aminotransfer 22.3 3E+02 0.01 28.2 9.7 71 254-325 80-155 (392)
108 3l8c_A D-alanine--poly(phospho 22.3 2E+02 0.007 31.2 8.7 79 406-489 29-109 (521)
109 3op7_A Aminotransferase class 22.0 2.9E+02 0.01 28.1 9.5 76 254-334 102-183 (375)
110 2ch1_A 3-hydroxykynurenine tra 21.7 3.2E+02 0.011 28.0 9.8 72 254-326 90-165 (396)
111 1e5e_A MGL, methionine gamma-l 21.0 2.7E+02 0.0094 29.1 9.1 71 254-326 98-169 (404)
112 3f9t_A TDC, L-tyrosine decarbo 20.6 6.6E+02 0.022 25.3 12.4 71 253-326 119-193 (397)
113 2cb1_A O-acetyl homoserine sul 20.5 2.6E+02 0.009 29.2 8.9 71 254-327 92-163 (412)
114 2cg4_A Regulatory protein ASNC 20.5 2.9E+02 0.0098 24.3 7.8 48 660-720 82-129 (152)
115 4hvk_A Probable cysteine desul 20.4 1.8E+02 0.0063 29.5 7.5 70 255-325 86-159 (382)
116 1o69_A Aminotransferase; struc 20.1 2.9E+02 0.0098 28.6 9.0 61 249-312 64-130 (394)
117 3sr3_A Microcin immunity prote 20.0 2.5E+02 0.0086 28.9 8.2 62 253-314 9-89 (336)
No 1
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.6e-103 Score=927.48 Aligned_cols=637 Identities=54% Similarity=0.998 Sum_probs=544.8
Q ss_pred CChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHH
Q 004034 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208 (778)
Q Consensus 129 ~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 208 (778)
++..|..++... .++|++||+++++||++||+++++.+.|.+++++ ++..+.. ...++.+||+++++|+++++|++
T Consensus 9 ~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~wf~~~~~n~~~~~l~~ 84 (652)
T 1pg4_A 9 IPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTSFA--PGNVSIKWYEDGTLNLAANCLDR 84 (652)
T ss_dssp CCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEECC--TTCCEEEESTTCEECHHHHHTGG
T ss_pred CCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcc-cccCccc--cCCCCCEECCCCChhHHHHHHHH
Confidence 344354444333 4789999999999999999999877999998887 5532211 01224699999999999999999
Q ss_pred hhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC
Q 004034 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 209 ~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~ 288 (778)
+++ ++||++|+++.+++.+..+++||+||+++++++|++|+++||++||+|+|+++|++|++++||||+++|++++|++
T Consensus 85 ~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 85 HLQ-ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp GHH-HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred Hhc-cCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecC
Confidence 998 7999999999754334578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccch
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 368 (778)
|.++.+++.++|+++++++||+++...+..+.+.++..+++++..+. ...+..+++++.... ...+...++.+|
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~ 237 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN--VTSVEHVIVLKRTGS----DIDWQEGRDLWW 237 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT--CCSCCEEEEECSSCC----CCCCCBTTEEEH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC--cCCCCEEEEEeCCCC----cccccCCCceeH
Confidence 99999999999999999999999988888888888887777654320 013566777664321 112223345667
Q ss_pred hhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHH
Q 004034 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (778)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i 448 (778)
++.+.......+.....++|++||+|||||||+||||+++|++++.+....+...+++.++|++++++|++|++|+.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~ 317 (652)
T 1pg4_A 238 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317 (652)
T ss_dssp HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTT
T ss_pred HHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHH
Confidence 77665443334445667899999999999999999999999997777666667779999999999999999999987889
Q ss_pred HHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHH
Q 004034 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (778)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (778)
+.+|++|++++++++.+..+++..++++|++++||+++++|++++.|++.........++++||.+++|||+++++++++
T Consensus 318 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 397 (652)
T 1pg4_A 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW 397 (652)
T ss_dssp HHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHH
Confidence 99999999999998766667999999999999999999999999999987654344568899999999999999999999
Q ss_pred HHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccc
Q 004034 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (778)
Q Consensus 529 ~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY 608 (778)
+.+.+|..++++++.||+||++++++...++..+.+++++|+|++|++++|+|++|++++.|+.|||+|+||||++++||
T Consensus 398 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 398 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEE
T ss_pred HHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhh
Confidence 99998865689999999999997766554443356789999999999999999999999999999999999999999999
Q ss_pred cCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCe
Q 004034 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 609 ~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 688 (778)
|+++++|.+.|+...+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++++++..++
T Consensus 478 ~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~ 557 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557 (652)
T ss_dssp TTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEE
T ss_pred cCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCe
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhh
Q 004034 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGV 768 (778)
Q Consensus 689 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~ 768 (778)
.++|||+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++++++++.++++||++
T Consensus 558 ~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~ 637 (652)
T 1pg4_A 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGV 637 (652)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHH
Confidence 99999999887666667789999999999999999999999999999999999999999999887667889999999999
Q ss_pred HHHHHhhh
Q 004034 769 VDQLIALA 776 (778)
Q Consensus 769 ~~~~~~~~ 776 (778)
++++++..
T Consensus 638 ~~~~~~~~ 645 (652)
T 1pg4_A 638 VEKLLEEK 645 (652)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-103 Score=931.26 Aligned_cols=637 Identities=49% Similarity=0.868 Sum_probs=532.2
Q ss_pred CCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhh-cccccccCcccccccccccCCCcc--cccCCCCcccHHHH
Q 004034 128 LPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVK--IEWFKGGITNICYN 204 (778)
Q Consensus 128 y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~wf~~~~~n~~~~ 204 (778)
+.+.||....... +++|.++++++++||+.||++++++ +.|.+++++ +++.+++. .+..+ .+||+++++|++++
T Consensus 10 ~~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~ 86 (663)
T 1ry2_A 10 HSSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKT-GRPSFQNNAWFLNGQLNACYN 86 (663)
T ss_dssp ---------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSS-CSBCSTTCCBSTTCEECHHHH
T ss_pred ccccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCce-eecCcccc-ccCCCCCCCcCCCCCccHHHH
Confidence 3445677766664 6789999999999999999999988 999999887 65433110 10112 59999999999999
Q ss_pred HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCE
Q 004034 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (778)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav 283 (778)
+|+++++ ++||++|+++.+++.+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++|++++||||+++|++
T Consensus 87 ~l~~~a~-~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav 165 (663)
T 1ry2_A 87 CVDRHAL-KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAI 165 (663)
T ss_dssp HTHHHHT-TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhc-cCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 9999998 89999999997543345789999999999999999999 999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCC
Q 004034 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (778)
Q Consensus 284 ~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (778)
++|++|.++.+++.++|+++++++||+++...+..+.+.++..++++++.+ +.++.+++++..... ...+...
T Consensus 166 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~---~~~~~~~ 238 (663)
T 1ry2_A 166 HSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAP 238 (663)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSS
T ss_pred EEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC----CCCceEEEEecCCCC---ccccCCC
Confidence 999999999999999999999999999999888888888888877765543 456677777643210 1112234
Q ss_pred cccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhh
Q 004034 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (778)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 443 (778)
++.+|.+.+.......+.....++|++||+|||||||+||||+++|++++.+....+...+++.++|++++.+|++|++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 239 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp SEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred ccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence 56677776654443344556778999999999999999999999999987776666777899999999999999999999
Q ss_pred hhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCH
Q 004034 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (778)
Q Consensus 444 ~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (778)
+.+.++++|+.|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||++++
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 398 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 398 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence 87889999999999999988776779999999999999999999999999999876543455689999999999999999
Q ss_pred HHHHHHHHHhCCCCcceecccccccccceecccCC-CCCCCCCCCcCcCcCCceEEEECC-CCceeCC-CeeeEEEEecC
Q 004034 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSS 600 (778)
Q Consensus 524 ~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~-g~~GEL~v~g~ 600 (778)
++++++.+.+|..++++++.||+||++++++...+ +..+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSC
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecC
Confidence 99999999987656899999999999976655443 334567899999999999999999 9999998 99999999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
||++++|||+++++|.+.|+...+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 558 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 99999999999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCC---C-CH---HHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVP---Y-SE---ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~---~-~~---~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
++++..++.++|||+++++.. . ++ ++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 999888999999999987643 2 22 4578999999999999999999999999999999999999999999877
Q ss_pred cCcCCCCCCCCChhhHHHHHhh
Q 004034 754 LDELGDTSTLADPGVVDQLIAL 775 (778)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~ 775 (778)
.+++++.+|++||++++++++.
T Consensus 639 ~~~~~~~~~l~~p~~~~~~~~~ 660 (663)
T 1ry2_A 639 SDQLGDVSTLSNPGIVRHLIDS 660 (663)
T ss_dssp -----------CCHHHHHHHHT
T ss_pred CCCCCCcccccCHHHHHHHHHH
Confidence 6678999999999999999873
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.4e-83 Score=748.00 Aligned_cols=524 Identities=28% Similarity=0.385 Sum_probs=426.5
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
+|.....+|+++++|+++++ ++||++|+++.+++ +..+++||+||.++++++|++|+++||++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYAR-DSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHH-HCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHh-hCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 55555668899999999999 89999999986543 44689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEEccC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 350 (778)
+++|||+++|++++|++|.++.+++.++++++++++||++.+.. +...+.+....+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 223444444444 333 344444322
Q ss_pred CccccccccCCCCcccchhhccCCCCCCC--C--ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCC
Q 004034 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (778)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~ 426 (778)
. ......+.+.+....... + .....++|++||+|||||||+||||+++|.+++. ........+++
T Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~-~~~~~~~~~~~ 263 (580)
T 3etc_A 195 V----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG-HILTAKYWQNV 263 (580)
T ss_dssp C----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHH-HHHHHHTTSCC
T ss_pred c----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHH-HHHHHHHhhCC
Confidence 1 011223333332222111 1 1356789999999999999999999999998544 34444556788
Q ss_pred CCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccC
Q 004034 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (778)
Q Consensus 427 ~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~ 506 (778)
.+++++++.++++|..+....++.++..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccC
Confidence 99999999999999988666688999999999998642 358999999999999999999999999998863 3456
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCce
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~ 586 (778)
++++||.+++|||+++++++++|.+.+| +++++.||+||++.+++.... ...+++++|+|++|++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999887 789999999999876553322 23567899999999999999999999
Q ss_pred eCCCeeeEEEEecC---CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHH
Q 004034 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663 (778)
Q Consensus 587 ~~~g~~GEL~v~g~---~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eI 663 (778)
++.|+.|||+|+++ .+++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.||
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99999999999962 26899999999999998874 6899999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccH
Q 004034 664 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743 (778)
Q Consensus 664 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R 743 (778)
|++|.+||+|.+|+|++++++..++.++|+|+++++...++.+.++|+++|+++||+||+|+.|+++++||+|+||||+|
T Consensus 491 E~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 491 ESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp HHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred HHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 99999999999999999999999999999999998876667778999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004034 744 RILRKIASR 752 (778)
Q Consensus 744 ~~L~~~~~~ 752 (778)
++|++++..
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999998753
No 4
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.5e-85 Score=826.44 Aligned_cols=572 Identities=20% Similarity=0.269 Sum_probs=472.7
Q ss_pred CCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-ccc
Q 004034 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (778)
Q Consensus 103 ~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (778)
+.++|||++.+.. ++++...++|++++|+++++++++++|.++|++++++|++.++++.. +. ..+... ++ .++
T Consensus 382 ~~~~~dL~l~~~~---~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~-~~e~~~-~~~~~~ 455 (1304)
T 2vsq_A 382 EKSNYDLNLMASP---GDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VD-DREREF-LLTGLN 455 (1304)
T ss_dssp CCCCSSEEEEEEC---SSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CC-HHHHHH-HHTTTS
T ss_pred cccccCeEEEEec---CCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CC-HHHHHH-HHHhcC
Confidence 4678999887542 35678899999999999999999999999999999999999887631 11 111111 11 111
Q ss_pred ccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004034 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (778)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Va 261 (778)
.... .++. .+++++|+++++ ++||++|+++. ++++||+||+++++++|++|++.|+++|++|+
T Consensus 456 ~~~~-------~~~~---~~l~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 518 (1304)
T 2vsq_A 456 PPAQ-------AHET---KPLTYWFKEAVN-ANPDAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518 (1304)
T ss_dssp CCCC-------CCCC---CCHHHHHHHHHH-HCTTSEEEESS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCC-------CCCC---CCHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEE
Confidence 1100 0111 258999999999 89999999976 68999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004034 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (778)
Q Consensus 262 i~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (778)
|+++|++++++++|||+|+|++|||+||.+|.+++.++++++++++||+++........ + +..
T Consensus 519 i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-------------~----~~~ 581 (1304)
T 2vsq_A 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-------------L----PYT 581 (1304)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-------------C----CCC
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-------------c----CCC
Confidence 99999999999999999999999999999999999999999999999998765321100 0 111
Q ss_pred cEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Q 004034 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (778)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (778)
...+.++.... + . .....+.....++++|||+|||||||+||||+++|++++ +. .+..
T Consensus 582 ~~~~~~~~~~~---------------~----~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~-~~-~~~~ 639 (1304)
T 2vsq_A 582 GTTLFIDDQTR---------------F----E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GL-VKHV 639 (1304)
T ss_dssp SEEEESSCGGG---------------G----G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHH-HH-HSSC
T ss_pred CcEEEeccccc---------------c----c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHH-HH-HHHH
Confidence 22222221100 0 0 011112234578999999999999999999999999954 43 3344
Q ss_pred HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 422 ~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
..+++.++|+++++++++|+.+ ++.+|.+|+.|+++++.+... ..++..+++.|++++||+++++|++++.|.+....
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~-~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 717 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHT-LLDTERLTDLILQENVNVMFATTALFNLLTDAGED 717 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGG-TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH
T ss_pred HhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhh-cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh
Confidence 5678889999999999999987 688999999999999987543 34899999999999999999999999999875431
Q ss_pred ccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC--CCCCCCCcCcCcCCceEEE
Q 004034 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (778)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~g~~~~I 579 (778)
.+++||.+++|||++++++++.+.+.++ .+.++|.||+||++++++...... ......++|+|++|++++|
T Consensus 718 -----~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 790 (1304)
T 2vsq_A 718 -----WMKGLRCILFGGERASVPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYI 790 (1304)
T ss_dssp -----HHHTCSEEEEESSCCCHHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEE
T ss_pred -----cCCCccEEEEecCCCCHHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEE
Confidence 3578999999999999999999999887 368999999999997655432211 1234578999999999999
Q ss_pred ECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC----CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCc
Q 004034 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655 (778)
Q Consensus 580 vd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~----~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 655 (778)
+|++++++|.|+.|||+|+| |++++||+|+++.+.+.|.. +.++||||||+|++++||+|+|+||+|||||++|
T Consensus 791 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G 868 (1304)
T 2vsq_A 791 LNEQSQLQPFGAVGELCISG--MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868 (1304)
T ss_dssp ECTTSCBCCTTCCEEEEEEE--TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETT
T ss_pred ECCCcCCCCCCCceEEEEec--cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECC
Confidence 99999999999999999999 99999999999999888853 2345999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCC
Q 004034 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735 (778)
Q Consensus 656 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 735 (778)
+||+|+|||++|.+||+|++|+|++.+++.+++.++|||+..... + .++|+++|+++||.||+|..|+++++||+
T Consensus 869 ~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~--~---~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~ 943 (1304)
T 2vsq_A 869 HRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL--S---AEDVKAHLKKQLPAYMVPQTFTFLDELPL 943 (1304)
T ss_dssp EEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS--C---HHHHHHHHHHHSCGGGSCSEEEEESCCCC
T ss_pred EeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC--C---HHHHHHHHHHhChHhhhccEEEEecccCC
Confidence 999999999999999999999999999888889999999986532 2 57899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhc
Q 004034 736 TRSGKIMRRILRKIASR 752 (778)
Q Consensus 736 T~sGKi~R~~L~~~~~~ 752 (778)
|+||||||++|++....
T Consensus 944 t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 944 TTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp CSSCSSCCSCCCCCCGG
T ss_pred CCCcccCHhhcCCcchh
Confidence 99999999999876543
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.8e-82 Score=730.03 Aligned_cols=505 Identities=23% Similarity=0.346 Sum_probs=430.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|.++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLS-NHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGG-GSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh-cCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 48899999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+.+..... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987643 2223322221 12 234333211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCC
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (778)
.....+.+.........+.....++|++||+|||||||+||||+++|++++........ ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 11233444433333333444567899999999999999999999999996655443321 1356788999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999877778899999999999854 489999999999999999999999999998764 345678999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeee
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~G 593 (778)
||++++++.+++.+.++ +++++|.||+||++.+.+... ......+++++|+|+++++++|+| ++|++++.|+.|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999985 488999999999997654321 112234678999999999999999 579999999999
Q ss_pred EEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCcc
Q 004034 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673 (778)
Q Consensus 594 EL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V 673 (778)
||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 459 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 89999999999999888744 78999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 674 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
.+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 460 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred ceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999998899999999998776554 578999999999999999999999999999999999999998765
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=7.1e-82 Score=730.21 Aligned_cols=510 Identities=21% Similarity=0.296 Sum_probs=427.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCEEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 47899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++.... ......+......+ +.++.++..+...
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcC----CCccEEEEcCCcc---------
Confidence 999999999999999999999999999999875421 11122222322222 3444444433211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.|.+.........+.....++|++||+|||||||+||||+++|++++.. .......+++.++|++++.+|++|
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 162 ------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS-LKRSVEVCWLDHSTVYLAALPMAH 234 (539)
T ss_dssp ------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH-HHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHH-HHHHHHhhCCCCCCEEEEeecccc
Confidence 0111111111111223457899999999999999999999999996544 444556788999999999999999
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
++++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....++++||.+++|||
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred cchhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCC
Confidence 988654 68999999999999754 489999999999999999999999999987643 22457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCc-eEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~-~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++.+++.+.++ +++++.||+||++..... .........+++|+|+++. +++|+|+++++++.|+.|||+|+
T Consensus 309 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 384 (539)
T 1mdb_A 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (539)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEee
Confidence 999999999999886 789999999997643332 1111112346899999764 89999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--cccchhhcCChhhhhhhccC--CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999999888864 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcC
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 757 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~ 757 (778)
++++++..++.++|||++++. ..+ .++|+++++++ ||.||+|+.|+++++||+|+||||+|++|++++.++++++
T Consensus 461 v~~~~~~~g~~~~a~vv~~~~-~~~---~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 461 VSMPDQFLGERSCVFIIPRDE-APK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp EEEEETTTEEEEEEEEEESSS-CCC---HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred EeccccccCceEEEEEEECCC-CCC---HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 999998889999999998743 222 57899999998 9999999999999999999999999999999998877766
Q ss_pred CC
Q 004034 758 GD 759 (778)
Q Consensus 758 ~~ 759 (778)
++
T Consensus 537 y~ 538 (539)
T 1mdb_A 537 FK 538 (539)
T ss_dssp --
T ss_pred cc
Confidence 53
No 7
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.1e-80 Score=724.42 Aligned_cols=519 Identities=26% Similarity=0.368 Sum_probs=438.7
Q ss_pred ccCCCCcccHHHHHHHHhhhcc-----CCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeC
Q 004034 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~ 265 (778)
.|+....+|+++++|+++++ + +||++|+++.+.+ +..+++||+||.++++++|++|+++ |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~a~-~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHWAD-MEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHHHH-HHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHHHh-hccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 67777788899999999988 7 9999999986422 2358899999999999999999998 9999999999999
Q ss_pred CChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004034 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (778)
Q Consensus 266 ~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 345 (778)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+.+....+ +.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVDTVASEC----PSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHHHHGGGC----TTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHHHHhhcC----CceeEEE
Confidence 99999999999999999999999999999999999999999999987642 2222222222 3455555
Q ss_pred EEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHH-HHHHHHHhh
Q 004034 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (778)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~-~~~~~~~~~ 424 (778)
.++.... .....+.+.+.......+.....++|++||+|||||||.||||+++|+ .+.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 011223333322222222334568999999999999999999999999 4542 33333 567
Q ss_pred CCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccc
Q 004034 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (778)
Q Consensus 425 ~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~ 504 (778)
++.++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8899999999999999998766789999999999998642 358999999999999999999999999998763 23
Q ss_pred cCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCC
Q 004034 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (778)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g 584 (778)
..++++||.+++|||++++++++++.+.++ ++++|.||+||++.+++.... ....++++|+|+++++++|+|++|
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 446899999999999999999999999886 789999999999866543321 134678999999999999999999
Q ss_pred ceeCCCeeeEEEEe-----cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeC
Q 004034 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659 (778)
Q Consensus 585 ~~~~~g~~GEL~v~-----g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~ 659 (778)
++++.|+.|||+|+ | |++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~ 467 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIG 467 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEEC
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEEC
Confidence 99999999999999 7 8999999999999988774 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC--CCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~--~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~ 737 (778)
|.|||++|.+||+|.+|+|++.+++..++.++|||++.++. ...+.+.++|+++|+++||.||+|+.|+++++||+|+
T Consensus 468 p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 547 (570)
T 3c5e_A 468 PSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547 (570)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCT
T ss_pred HHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCC
Confidence 99999999999999999999999988899999999987654 2234567899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhc
Q 004034 738 SGKIMRRILRKIASR 752 (778)
Q Consensus 738 sGKi~R~~L~~~~~~ 752 (778)
+|||+|++|++.+..
T Consensus 548 ~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 548 TGKIQRAKLRDKEWK 562 (570)
T ss_dssp TCCBCHHHHHHHHTC
T ss_pred CcCCcHHHHHHHHHh
Confidence 999999999998754
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.8e-81 Score=720.44 Aligned_cols=499 Identities=21% Similarity=0.303 Sum_probs=418.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~a~-~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 17 NIGWMLRQRAT-VSPRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEeCC----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57899999999 899999999862 2469999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+....... .....++.+..
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~----------- 147 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQA----DPPGTVTDWIG----------- 147 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHSS----SCCTTCCEEEE-----------
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhcc----CCccEEEEccC-----------
Confidence 99999999999999999999999999999986542 2222222211 11111111110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+.+.+.......+.....++|++||+|||||||.||||+++|++++. ........+++.++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHS-AASSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHH-HHHHHHHhcCCCCCCEEEEeCchHH
Confidence 01122222222223334456789999999999999999999999999544 4455566789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.++...++ +++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||+
T Consensus 223 ~~~~~~~~~-~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 223 VAALTTVIF-SAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAP 295 (517)
T ss_dssp HHHHHHHHH-HHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSSC
T ss_pred HHHHHHHHH-HHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCCC
Confidence 998654444 4559999999854 589999999999999999999999999988643 334578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+++.+. + +++++.||+||+++..+...........+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 296 l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g- 369 (517)
T 3r44_A 296 MPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS- 369 (517)
T ss_dssp CCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE-
T ss_pred CCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC-
Confidence 999999998876 4 78999999999987655443333245678999999999999999999999999 89999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 370 -~~v~~GY~~~p~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 370 -DILLKEYWNRPEATRDAFD---NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp -TTSCSEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCCChhhhHhhhc---CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 8999999999999988873 689999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
++++..++.++++| ..++...+ .++|+++++++||.||+|+.|+++++||+|+||||+|++|++.+.+++
T Consensus 446 ~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 446 LPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99998888898988 44444443 578999999999999999999999999999999999999999997653
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.8e-81 Score=717.10 Aligned_cols=496 Identities=23% Similarity=0.343 Sum_probs=420.3
Q ss_pred HHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCE
Q 004034 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (778)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav 283 (778)
++|+++++ ++||++|+...... ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~-~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFD-KLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHS-CCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHH-hCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56788888 89999998865432 678999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCC
Q 004034 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (778)
Q Consensus 284 ~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (778)
++|++|.++.+++.++++++++++||+++..... +.+..... . . .+..+....
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~----~-~-~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKV----G-A-TVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHH----T-C-EEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhc----C-c-eEEEecCCc------------
Confidence 9999999999999999999999999998765321 11112221 1 1 233222211
Q ss_pred cccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhh
Q 004034 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (778)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 443 (778)
...+.+.........+.....++|++||+|||||||+||||+++|++++ +........+++.++|++++.+|++|..+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA-SNSLTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHH-HHHHHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 0011111111122223345678999999999999999999999999954 44555666789999999999999999998
Q ss_pred hhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCH
Q 004034 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (778)
Q Consensus 444 ~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (778)
+...++.+++.|+++++.+. ++++.+++.++ ++|+++++|+++..|++... ....++++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76667889999999999763 58999999998 89999999999999998754 234567899999999999999
Q ss_pred HHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeeeEEEEecCCC
Q 004034 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (778)
Q Consensus 524 ~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p 602 (778)
++.+++.+.++ ++++|.||+||++..+..... ....++++|+|+++++++|+| ++|++++.|+.|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPYD--GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCSS--SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCCC--CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 689999999999876443222 234678899999999999999 789999999999999999 8
Q ss_pred cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEe
Q 004034 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682 (778)
Q Consensus 603 ~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 682 (778)
++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVP 433 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeE
Confidence 9999999999999988754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 683 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
++..++.++++|+.+++...+ .++|+++++++||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 434 ~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 434 HADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred chhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 998899999999998876555 5789999999999999999999999999999999999999998864
No 10
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.4e-82 Score=731.86 Aligned_cols=512 Identities=21% Similarity=0.302 Sum_probs=392.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCC--CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAE-KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHH-HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 47789999998 89999999988521 1223899999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 279 ~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
++|++++|++|.++.+++.++++++++++||+++... ..+...... ..+..++..+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 222222221 234455544321
Q ss_pred cCCCCcccchhhccCCCCCCCCccccCC-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 437 (778)
...+.+.+.......+.....+ +|++||+|||||||+||||+++|++++.+ .......+++.++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAAN-ALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHH-HHHHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHH-HHHHHHHcCCCCCCEEEEeCc
Confidence 1123333222222222223334 89999999999999999999999995544 445566789999999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999988554 7788999999999863 58999999999999999999999999998765432223578999999999
Q ss_pred cCCCCHHHHHHHHHH----hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCee
Q 004034 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~----~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~ 592 (778)
||++++++.+++.+. ++..++.+++.||+||++.+++...... ....+++|+|+++++++|+| ++|++++.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999887 6644588999999999998766543322 24568899999999999999 79999999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
|||+|+| |++++|||++++.+.+.|+.+.+| ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+|
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 9999999 899999999999999988644466 999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCC--CCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEG--VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~--~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
|+|.+|+|++++++..++.++|||+++++ ...+ .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++
T Consensus 462 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 538 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538 (549)
T ss_dssp TTEEEEEEECCCC------CEEEEEECSTTTTSCC---HHHHHHHHHTTCC-----CCCCEEEECC--------------
T ss_pred CCeeeEEEEeeEccccCceEEEEEEECCCccCcCC---HHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHH
Confidence 99999999999998889999999999876 2233 578999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 004034 749 IASRQ 753 (778)
Q Consensus 749 ~~~~~ 753 (778)
...++
T Consensus 539 ~~~~~ 543 (549)
T 3g7s_A 539 KEAEG 543 (549)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 87654
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.3e-79 Score=705.73 Aligned_cols=492 Identities=22% Similarity=0.251 Sum_probs=411.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57889999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEE--cCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
|++++|++|.++.+++.+++++++++++|+ ++... . ...... ..++ ++.+++...
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~---~~~~~~----~~~~-~~~~~~~~~------ 134 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------D---AIFQSG----SGAR-IIFLGDLVR------ 134 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------H---HHHHHC----CCCE-EEEGGGTEE------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------h---hhhhcc----ccce-eEEecchhh------
Confidence 999999999999999999999999999999 54321 1 110111 1222 222221100
Q ss_pred cCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCC--CCCcEEEEeC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTA 436 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~--~~~d~~l~~~ 436 (778)
.. +.... ....+.....+++++||+|||||||+||||+++|+++..+ .......+++ .++|++++.+
T Consensus 135 ---~~------~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 203 (504)
T 1t5h_X 135 ---DG------EPYSY-GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESR-VLFMSTQVGLRHGRHNVVLGLM 203 (504)
T ss_dssp ---TT------EECCC-SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHH-HHHHHHTTCCCSSTTCEEEECS
T ss_pred ---cC------ccccc-CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHH-HHHHHHhhCCCCCCCceEEeec
Confidence 00 00000 0111113456899999999999999999999999996544 4444556777 7899999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
|++|+.++...++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 204 PLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp CTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred chhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 999999876778899999999999864 4899999999999999999999999999876422123346899999999
Q ss_pred ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCC---ceeCCCeee
Q 004034 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIEGECSG 593 (778)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g---~~~~~g~~G 593 (778)
|||++++++.+++.+.++ +.++|.||+||++. +.... ....+++|+|+++++++|+|+++ ++++.|+.|
T Consensus 280 gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~G 351 (504)
T 1t5h_X 280 AGATMPDAVLETVHQHLP---GEKVNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEG 351 (504)
T ss_dssp CCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCE
T ss_pred cCCcCCHHHHHHHHHhcC---cceeeeeccccccc-ccccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcc
Confidence 999999999999999986 68999999999943 22221 23567899999999999999887 999999999
Q ss_pred EEEEe-cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 594 YLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 594 EL~v~-g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
||+|+ | |++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus 352 El~v~gg--~~~~~GY~~~~~~t~~~f~---~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 426 (504)
T 1t5h_X 352 ELIVAAS--DSAFVGYLNQPQATAEKLQ---DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426 (504)
T ss_dssp EEEEECC--TTSCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTT
T ss_pred eEEEeCC--ceeeceecCCchhhhhhhc---CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCC
Confidence 99999 8 8999999999999988872 6899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|.+|+|++++++..++.++|||+++++...+ .++|++++++ +||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 427 V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999998899999999998765444 5789999998 99999999999999999999999999999999764
No 12
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.4e-80 Score=723.76 Aligned_cols=506 Identities=21% Similarity=0.310 Sum_probs=422.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 28 ~l~~~~~~~a~---pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 28 PLTDILTRHAA---SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp CTTHHHHTTTT---CCSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhC---CCCeEEecC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 46788998863 999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++++++...... .....+....... ..+..+...+...
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF----SGDDFLNTFVTEH----SSIRVVQLLNDSG--------- 161 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHHHHHHS----TTCCEEEEETCCS---------
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccc----ccHHHHHHHhhcC----Cccceeeeccccc---------
Confidence 9999999999999999999999999999998764311 1112222222222 3444444443221
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+.+...............++++|||+|||||||+||||+++|++++. ........+++.++|++++.+|++|
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 162 ----EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYY-SVRRSVEICQFTQQTRYLCAIPAAH 236 (617)
T ss_dssp ----TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ----ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHH-HHHHHHHhcCCCCcceEEEeccchh
Confidence 01122222222222233445689999999999999999999999999554 4455666789999999999999988
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.++... .++.+|+.|+++++.+. +++..+++.++++++|++.++|++++.|++.........++++||.+++|||
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 876543 68999999999999764 4889999999999999999999999999876432223346889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++.+++.+.++ ++++|.||+||++...+... ........++|+|+ ++++++|+|++++++|.|+.|||+|+
T Consensus 313 ~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~ 388 (617)
T 3rg2_A 313 RLSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388 (617)
T ss_dssp CCCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred cCCHHHHHHHHHHhC---CcEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999886 78999999999986544221 11112335789997 78899999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |++++||||+++.+.+.|.. +|||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|
T Consensus 389 G--~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 389 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp C--SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred C--ccccchhcCChhhhhhccCC--CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 9 89999999999999998864 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
++.+++..++.++|||+..+... ..++++++++ .||.||+|..|+++++||+|+||||||++|++++....
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCCC-----HHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99999888999999999986432 5688999998 69999999999999999999999999999999887553
No 13
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1e-80 Score=730.07 Aligned_cols=480 Identities=18% Similarity=0.205 Sum_probs=399.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~a~-~~Pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAA-LHPHREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEcC------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 58899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+||.++.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999776532110 0011 111100
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..............++|++||+|||||||+||||+++|+++.. .... ...+++.++|++++.+|++|
T Consensus 149 -----------~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 -----------LPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITR-LCLG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp -----------CCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHH-HHSS-CGGGTTCTTCEEEECSCTTS
T ss_pred -----------CCcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHH-HHHH-HHhhCCCCCCEEEEECccCH
Confidence 0011111222335689999999999999999999999999543 3332 44678899999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ ++.+|.+|+.|+++++.+. ..+++..+++.|+++++|+++++|++++.|++... .++++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDL--GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCS--SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCcc--ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCc
Confidence 998 5779999999999999743 23589999999999999999999999999987533 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCcCcCCceEEEECCCCce-eCCCeeeEEEE
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~g~~~~Ivd~~g~~-~~~g~~GEL~v 597 (778)
+++++.+++.+.++ +++++|.||+||++++++.... ........++|+|++|++++|+|+++++ ++.|+.|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999988888765 4889999999999976554321 1123456789999999999999999988 78999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCC---C--CeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~---~--G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
+| |++++||||+++.+.+.|.... . +||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~ 443 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPG 443 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTT
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCC
Confidence 99 8999999999999999886421 1 699999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|.+|+|++.+++. ...++++++.... +++++++++||.||+|..|+++++||+|+||||||++|++.+..
T Consensus 444 V~~a~Vv~~~~~~-~~~lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 444 ILDCALLVRERNG-VKQLLCAWTGKAD---------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEECTT---------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ccEEEEEEEeCCC-ceEEEEEEecChH---------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9999999998874 4455555554321 23445778899999999999999999999999999999998765
Q ss_pred cc
Q 004034 753 QL 754 (778)
Q Consensus 753 ~~ 754 (778)
..
T Consensus 514 ~~ 515 (620)
T 4dg8_A 514 PL 515 (620)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 14
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.5e-79 Score=710.17 Aligned_cols=509 Identities=19% Similarity=0.230 Sum_probs=424.3
Q ss_pred HHHH-HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.+ +|.++++ ++ |++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~-~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYA-KL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHH-HH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhc-cc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4667 7888887 78 999998741 257899999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.++++++++++||+++... ..+......+ +....++.++....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------- 159 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKTV----TTIKTIVILDSKVD------- 159 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHHS----TTCCEEEETTCSSC-------
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcCC----CCCCEEEEeCCccc-------
Confidence 999999999999999999999999999999987642 2222322222 22344554432210
Q ss_pred CCCCcccchhhccCCCCCC-CCccccC-----C-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh---hCCCCC
Q 004034 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~-~~~~~~~-----~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~~~~~ 429 (778)
......|.+.+...... .+..... + ++++||+|||||||+||||+++|++++.+... .... +++.++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 160 --YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH-ARDPIYGNQVSPG 236 (548)
T ss_dssp --BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHH-HTCTTTSCCCCTT
T ss_pred --ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHH-hhchhhccCCCcc
Confidence 00011233332221111 1111222 4 89999999999999999999999996554433 3333 678889
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~ 509 (778)
|++++.+|++|+.++...++.+| .|+++++.+. ++++.+++.|+++++|+++++|++++.|.+... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655567777 9999999853 589999999999999999999999999998754 2345789
Q ss_pred ceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeC
Q 004034 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (778)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~ 588 (778)
+||.+++|||++++++.+++.+.++ ++.+++.||+||++.+++..... ..+.+++|+|+++++++|+| +++++++
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999986 37899999999998766543221 34678999999999999999 6899999
Q ss_pred CCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 589 ~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
.|+.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 461 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence 99999999999 89999999999999887743 789999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCcccc-EEEECCCCCCCCCCcccHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~-~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
+||+|.+|+|++++++..++.++|+|+++++...+ .++|+++|+++|+.|++|. .|+++++||+|++|||+|++|+
T Consensus 462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~ 538 (548)
T 2d1s_A 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538 (548)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHH
T ss_pred hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHH
Confidence 99999999999999988899999999998765444 5789999999999999999 9999999999999999999999
Q ss_pred HHHhcccCc
Q 004034 748 KIASRQLDE 756 (778)
Q Consensus 748 ~~~~~~~~~ 756 (778)
+++.+.+++
T Consensus 539 ~~~~~~i~~ 547 (548)
T 2d1s_A 539 EILKKPVAK 547 (548)
T ss_dssp HHHHSCC--
T ss_pred HHHhhhhhc
Confidence 999876543
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.5e-80 Score=718.10 Aligned_cols=506 Identities=23% Similarity=0.292 Sum_probs=331.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 31 tl~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 31 PLTRILTVGVQ-SHPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEcC------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 36789999999 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++.... +.....+....... .....++.++....
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVN----LSPEIILMLNHQAT-------- 167 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTT----CCCSEEEEETCCTT--------
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhcc----cCcceEEEecCCcc--------
Confidence 999999999999999999999999999999876421 11112222222222 44555555443210
Q ss_pred CCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
...+.+..... ....+.....+++++||+|||||||+||||+++|++++.+ .......+++.++|++++.+|++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 ----DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS-VRASAEICGLNSNTRLLCALPAP 242 (544)
T ss_dssp ----SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHH-HHHHHHHTTCCTTCEEEECSCTT
T ss_pred ----ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHH-HHHHHHHhCCCCCCeEEEecCcc
Confidence 11111111111 1112224457899999999999999999999999995544 45566678999999999999999
Q ss_pred hhhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 440 WITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 440 ~~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
|.++... .++.+|..|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++||
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGG 316 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEES
T ss_pred eEeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcC
Confidence 9887543 68899999999999864 4899999999999999999999999999887542 234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCI 597 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v 597 (778)
|++++++.+++.+.++ +++++.||+||++...... .........++|+|+ ++++++|+|+++++++.|+.|||+|
T Consensus 317 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 317 ASFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHhC---CcEEeeeccccccceeecC-CCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999986 7899999999988544322 111112346899997 8999999999999999999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 393 ~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 393 RG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EC--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred ec--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99 89999999999999888754 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|++++++..++.++|||+.++... ..++|++++++ .||.||+|+.|+++++||+|+||||+|++|++++..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNPEL----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999988999999999875321 25678888988 799999999999999999999999999999998763
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.3e-78 Score=701.76 Aligned_cols=508 Identities=25% Similarity=0.331 Sum_probs=411.7
Q ss_pred CCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHH
Q 004034 196 GGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275 (778)
Q Consensus 196 ~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~L 275 (778)
...+|++.++|+++++ +||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 20 p~~~~~~~~~l~~~~~--~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET--RAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp --CCCHHHHHHHHTGG--GTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ccceeHHHHHHHhhhc--cCCceEEEeC------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3456788999998875 9999999975 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEEccCCccc
Q 004034 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMT 354 (778)
Q Consensus 276 A~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~ 354 (778)
||+++|++++|+++.++.+++.+++++++++++|+++... ..+.+....+ ... ..++.++....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~-- 156 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALESA----EHDGCQLIVSQPRES-- 156 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHHCC-------CCEEEEECC-----
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHhhc----cccCceEEEeccccc--
Confidence 9999999999999999999999999999999999987542 2222222211 122 33443332110
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEE
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~ 434 (778)
.. .....|.+.+.......+.....++|++||+|||||||.||||+++|+++...........+++.++|++++
T Consensus 157 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~ 230 (529)
T 2v7b_A 157 ---EP---RLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFS 230 (529)
T ss_dssp ---------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEE
T ss_pred ---cc---ccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEE
Confidence 00 001123333322222223344678999999999999999999999999963444444444578889999999
Q ss_pred eCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEE
Q 004034 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (778)
Q Consensus 435 ~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v 514 (778)
.+|++|+.++...++.+|..|+++++... .+++..+++.|+++++|+++++|+++..|++.... ......+||.+
T Consensus 231 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~ 305 (529)
T 2v7b_A 231 AAKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRIC 305 (529)
T ss_dssp SSCTTSHHHHHHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEE
T ss_pred eecHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEE
Confidence 99999999876778889999999998742 25899999999999999999999999999876432 11112489999
Q ss_pred EEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeE
Q 004034 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGY 594 (778)
Q Consensus 515 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GE 594 (778)
++|||++++++.+++.+.++ +++++.||+||++.+.+....+. ...+++|+|+++++++|+|++|++++.|+.||
T Consensus 306 ~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GE 380 (529)
T 2v7b_A 306 TSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAGA--VEYGTTGRPVPGYEIELRDEAGHAVPDGEVGD 380 (529)
T ss_dssp EECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTTC--CCTTSCCEECTTCEEEEECTTSCBCCTTSCEE
T ss_pred EEcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccCC--CccCCcccCCCCCEEEEECCCCCCCCCCCccE
Confidence 99999999999999999886 78999999999976554433222 46688999999999999999999999999999
Q ss_pred EEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 595 L~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
|+|+| |++++|||++++.+...|. +|||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.+||+|.
T Consensus 381 l~v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 455 (529)
T 2v7b_A 381 LYIKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVL 455 (529)
T ss_dssp EEEEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEE
T ss_pred EEEec--CCcccccCCChHHHHHhhh---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcc
Confidence 99999 8999999999999988774 689999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+|+|+++ ++..++.++|+|++.++....+.+.++|+++|+++||.|++|+.|+++++||+|+||||+|++|++
T Consensus 456 ~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 456 EAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 9999999 666788999999998765434445679999999999999999999999999999999999999985
No 17
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2e-79 Score=712.61 Aligned_cols=484 Identities=21% Similarity=0.242 Sum_probs=404.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 47899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++... . ....+ .....+..++...
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~---------~----~~~~~----~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNI----QFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTS----CCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh---------h----hhhhc----cccCceeeecchh---------
Confidence 99999999999999999999999999999986532 1 11111 1111222221110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
+ .............++|++||+|||||||.||||+++|++++ +........+++.++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS-NLKVFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHH-HHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHH-HHHHHHHHhcCCCCCCEEEEeCCccH
Confidence 0 00001111223467899999999999999999999999954 44555666789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ .+.++.+|+.|+++++.+.. ...++..+++.++++++|++.++|+++..|... .+++||.+++|||+
T Consensus 235 ~~~-~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DAS-VWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSA 304 (563)
T ss_dssp THH-HHHHHHHHTTTCEEEECCHH-HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSC
T ss_pred HHH-HHHHHHHHHCCCEEEEcChH-hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEec
Confidence 987 46788999999999997542 124889999999999999999999998776432 46789999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCC-CCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++++++.+. +++++.||+||++.+++..... .......++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999888653 6899999999998765433221 1123567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccC----CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~----~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
|++++|||++++.+.+.|.. +.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 89999999999998888753 234699999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|+|++.+++..++.++|||+..... + .++|+++++++||.||+|+.|+++++||+|++|||+|++|++...
T Consensus 458 a~Vv~~~~~~~~~~~~a~vv~~~~~--~---~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 458 TAVSVHKDHQEQPYLCAYFVSEKHI--P---LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred EEEEEeecCCCCeEEEEEEEeCCCC--C---HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999988889999999986533 2 578999999999999999999999999999999999999987653
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.9e-79 Score=701.13 Aligned_cols=498 Identities=19% Similarity=0.246 Sum_probs=417.5
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAA-ETPDQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCceEEEeC------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 5688999998 89999999986 6899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.+++++++++++|++........ . ..++..+...
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~~~---------- 124 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDNLK---------- 124 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHHHH----------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhhhh----------
Confidence 99999999999999999999999999999755321100 0 0011000000
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
... .........+.....+++++||+|||||||.||||+++|++++ .........+++.++|++++.+|++|+
T Consensus 125 ---~~~---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~~ 197 (512)
T 3fce_A 125 ---DIF---FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-SFTKWAVEDFNLQTGQVFLNQAPFSFD 197 (512)
T ss_dssp ---HHH---HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHH-HHHHHHHHHTTCCSSCEEEECSCTTSG
T ss_pred ---hhc---ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHH-HHHHHHHHhcCCCCCCEEEEeCCccHh
Confidence 000 0000111122344678999999999999999999999999955 445556667899999999999999999
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.+ .+.++.+|+.|+++++.+.. ..+++..+++.++++++|++.++|++++.++.... ....++++||.+++|||++
T Consensus 198 ~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~~l 273 (512)
T 3fce_A 198 LS-VMDIYPSLVTGGTLWAIDKD-MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGEVL 273 (512)
T ss_dssp GG-HHHHHHHHHTTCEEEECCHH-HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSSCC
T ss_pred HH-HHHHHHHHhCCCEEEECCHH-HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecCcC
Confidence 98 46789999999999998641 12378999999999999999999999999887654 2345789999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++.+++.+.++ ++++++.||+||++++++...... ......++|+|+++++++|+|++|++++.|+.|||+|+
T Consensus 274 ~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~ 351 (512)
T 3fce_A 274 PNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIV 351 (512)
T ss_dssp CHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEE
T ss_pred CHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEe
Confidence 9999999999985 488999999999987654322111 12356789999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
| |++++|||++++.+.+.|.. +.+|||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 352 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 428 (512)
T 3fce_A 352 G--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAV 428 (512)
T ss_dssp S--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEE
T ss_pred c--cccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 9 89999999999999888742 23569999999999 89999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|++++++..++.++|+|++.++.... .++.++|+++|+++||.|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 429 vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 429 IVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 99999988889999999998765433 34578899999999999999999999999999999999999999998754
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.1e-80 Score=762.77 Aligned_cols=566 Identities=20% Similarity=0.278 Sum_probs=340.8
Q ss_pred cccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHH
Q 004034 125 DIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204 (778)
Q Consensus 125 ~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~ 204 (778)
.-+|++++.|++|++++..+++.+++.+...+.....+ ..|...... ...+ ...++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~p------------~~~tl~~ 65 (979)
T 3tsy_A 8 HHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSD----VIFRSKLPD------IYIP------------NHLSLHD 65 (979)
T ss_dssp -------------------------------------C----CCBCCSSCC------CCCC------------TTSCHHH
T ss_pred cccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCC----ceeecCCCC------CCCC------------CCCCHHH
Confidence 45789999999999999999999998887776654321 233222111 0111 1125889
Q ss_pred HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEE
Q 004034 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284 (778)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~ 284 (778)
+|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 66 ~l~~~a~-~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~ 140 (979)
T 3tsy_A 66 YIFQNIS-EFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140 (979)
T ss_dssp HHTTTGG-GTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHH-hCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence 9999998 899999999752 25789999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCc
Q 004034 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364 (778)
Q Consensus 285 vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 364 (778)
+|++|.++.+++.++++++++++||+++...... ...... ..+ .++.++.... ... ...
T Consensus 141 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~-----~~~-~~~~~~~~~~-----~~~-~~~ 199 (979)
T 3tsy_A 141 TAANPFFTPAEIAKQAKASNTKLIITEARYVDKI---------KPLQND-----DGV-VIVCIDDNES-----VPI-PEG 199 (979)
T ss_dssp EEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS---------HHHHHT-----SCC-EEEECCCCTT-----SCC-CTT
T ss_pred EeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH---------HHHhhc-----CCc-eEEEeCCccc-----ccC-Ccc
Confidence 9999999999999999999999999987654321 111111 112 2343333210 000 112
Q ss_pred ccchhhccCCCCC---CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCCc
Q 004034 365 DIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADC 438 (778)
Q Consensus 365 ~~~~~~~l~~~~~---~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~~ 438 (778)
...|.+....... ..+.....++|++||+|||||||+||||+++|++++........ ..+++.++|++++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 279 (979)
T 3tsy_A 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 279 (979)
T ss_dssp EEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCS
T ss_pred cccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECch
Confidence 2334433332211 22334567899999999999999999999999996655443221 13567889999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++||
T Consensus 280 ~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gg 353 (979)
T 3tsy_A 280 FHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGA 353 (979)
T ss_dssp SSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEcC
Confidence 9999876778899999999999864 489999999999999999999999999998754 3455789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGY 594 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GE 594 (778)
|++++++.+++.+.++ +++++|.||+||++.+++... ....+...+++|+|+++++++|+|+ ++++++.|+.||
T Consensus 354 ~~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE 431 (979)
T 3tsy_A 354 APLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431 (979)
T ss_dssp CCCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEE
T ss_pred CCCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccE
Confidence 9999999999999985 488999999999997654331 1223456789999999999999995 699999999999
Q ss_pred EEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 595 L~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
|+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.
T Consensus 432 l~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~ 507 (979)
T 3tsy_A 432 ICIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDIT 507 (979)
T ss_dssp EEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEESCC-------------------------
T ss_pred EEEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcc
Confidence 99999 89999999999999888754 789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|..|+++++||+|+||||+|++|++++.+.
T Consensus 508 ~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 508 DVAVVAMKEEAAGEVPVAFVVKSKDSELS---EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred eEEEEEecccCCCcEEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 99999999988899999999987654332 57899999999999999999999999999999999999999988754
No 20
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.1e-79 Score=712.26 Aligned_cols=507 Identities=22% Similarity=0.278 Sum_probs=385.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+. +.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 47789999998 8999999996421 23689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++|+++++++||+++... ..+.+....+ +.++.++.++...
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 153 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEKA--------- 153 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSCC---------
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHHHHHhhC----CCccEEEEecCCC---------
Confidence 99999999999999999999999999999986532 2222222211 3344555443321
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH-HHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~ 439 (778)
......|.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....+++.++|++++.+|++
T Consensus 154 -~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (541)
T 1v25_A 154 -PEGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229 (541)
T ss_dssp -CTTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred -CcccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccch
Confidence 00122344443322211 34567899999999999999999999999965443321 22356788999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.++ ..++.+|+.|+++++.+. .+++..+++.|+++++|+++++|++++.|++... ....++++||.+++|||
T Consensus 230 h~~~~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 230 HVNAW-CLPYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGS 303 (541)
T ss_dssp SHHHH-THHHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSS
T ss_pred hhhHH-HHHHHHHhcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCC
Confidence 99885 457789999999999753 2589999999999999999999999999987643 22347889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC----C-----CCCCCCcCcCcCCceEEEECCCCceeCC-
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG- 589 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~----~-----~~~~~~~G~p~~g~~~~Ivd~~g~~~~~- 589 (778)
++++++++++ +.++ +++++.||+||++.+++...... . ....+++|+|+++++++|+|++|++++.
T Consensus 304 ~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 304 AAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999 6665 78999999999997665432211 0 0135789999999999999999999984
Q ss_pred -CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 590 -ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 590 -g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
++.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.
T Consensus 380 ~~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 455 (541)
T 1v25_A 380 GKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455 (541)
T ss_dssp SCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--
T ss_pred CCcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH
Confidence 3689999999 89999999999999888753 789999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
+||+|.+|+|++++++..++.++|||+++ +...+ .++|++++++ +||.|++|+.|+++++||+|+||||+|++|+
T Consensus 456 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 531 (541)
T 1v25_A 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 531 (541)
T ss_dssp --------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC--------------CCTTHH
T ss_pred hCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHH
Confidence 99999999999999998899999999986 22211 4678899999 8999999999999999999999999999999
Q ss_pred HHHhccc
Q 004034 748 KIASRQL 754 (778)
Q Consensus 748 ~~~~~~~ 754 (778)
+.+.+.+
T Consensus 532 ~~~~~~~ 538 (541)
T 1v25_A 532 EQYKNYY 538 (541)
T ss_dssp HHSTTSS
T ss_pred HHHHHhh
Confidence 9887554
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6.2e-80 Score=718.76 Aligned_cols=485 Identities=22% Similarity=0.288 Sum_probs=321.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~-~~pd~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAA-RAPDAVALLHE------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCCeEEECC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++...... .....++ +.+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~-~~~~~--------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLY-VEDEA--------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEE-CCC-----------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCccee-eeccc---------
Confidence 99999999999999999999999999999987643210 1111111 11100
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..............++|++||+|||||||.||||+++|++++... .. ...+++.++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY-LG-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHH-SS-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHH-Hh-hhhcCCCCCCEEEEecCccH
Confidence 000111122234678999999999999999999999999954332 22 34567888999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEeccc
Confidence 765 56889999999999998643 3589999999999999999999999999987643 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
+++++.+++.+.++ ++++++.||+||++++.+.... ........++|+|+++++++|+|+++++++.|+.|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999998875 4789999999999876553321 1122345679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCC------CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~------~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
| |++++|||++++.+.+.|..+ .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~ 493 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPA 493 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCC
Confidence 9 899999999999998887532 24699999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
|.+|+|++.+++.+++.++|||+.++... ....++|+++|+++||.|++|..|+++++||+|++|||+|++|++.
T Consensus 494 V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 494 VRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 99999999998888899999999865422 1125789999999999999999999999999999999999999875
No 22
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.2e-78 Score=695.38 Aligned_cols=495 Identities=17% Similarity=0.217 Sum_probs=420.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|||+++
T Consensus 3 l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAE-TYPQTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCeEEEcC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 5688999998 89999999976 68999999999999999999875 8899999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++........ .... .+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~-~~--------------- 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ-TV--------------- 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC-EE---------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc-ee---------------
Confidence 9999999999999999999999999999997653210000 0000 11
Q ss_pred CCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.+.+..... ....+.....+++++||+|||||||.||||+++|++++ ....+....+++.++|++++.+|++
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 122 ------SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ-SFTDWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ------EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHH-HHHHHHHHHSTTTTTCEEEECSCTT
T ss_pred ------cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHH-HHHHHHHHhcCCCccceEEEeCCcc
Confidence 111111111 11122334578999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.+ .+.++.+|+.|+++++.+.. ..+++..+++.|+++++|++.++|++++.|+.... .....++++|.+++|||
T Consensus 195 ~~~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLS-VMDLYPCLQSGGTLHCVTKD-AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHH-HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHH-HHHHHHHHhcCCEEEEcChh-hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 9988 56789999999999997541 12378999999999999999999999999988754 23456889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEE
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~ 596 (778)
++++++.+++.+.++ ++++++.||+||++++++...... ......++|+|+++++++|+|++|++++.|+.|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999985 489999999999987654321111 123456799999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhhhhhccCCCCC-eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 597 v~g~~p~v~~gY~~~~~~~~~~~~~~~~G-~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
|+| |++++|||++++.+.+.|+...++ ||+|||+|++ +||+|+|+||.||+||++|+||+|.|||++|.+||+|.+
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~ 425 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRS 425 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 999 899999999999999988753333 7999999999 699999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|+|++++++..++.++|+|+++++.... .++.++|+++|+++||.|++|+.|+++++||+|++|||+|++|++.+..+
T Consensus 426 a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 426 AVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 9999999888889999999998765433 35578999999999999999999999999999999999999999998754
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4e-79 Score=702.55 Aligned_cols=493 Identities=23% Similarity=0.293 Sum_probs=319.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAA-LFPDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 47899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ ..+..++.++...
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 137 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAGVLPSL----GGVKKAYAIGDGS--------- 137 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHHHGGGC----SSCCEEEESSCCC---------
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHhhhccc----CCceEEEEcCCCC---------
Confidence 99999999999999999999999999999987642 2212221111 3445555443311
Q ss_pred CCCcccchhhccC-CCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
..+.+... ......+.....++|++||+|||||||.||||+++|++++ +........+++.++|++++.+|++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 211 (509)
T 3ivr_A 138 -----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-IAQSSLVDAWRLTEADVNLGMLPLF 211 (509)
T ss_dssp -----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCcEEEEeCCCc
Confidence 11111111 1112223345678999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.++.. ++.+++.|++.++.. .+++..+++.|+++++|++.++|+++..|++... ..++++||.++++|+
T Consensus 212 ~~~g~~~-~~~~~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 212 HVTGLGL-MLTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDT 282 (509)
T ss_dssp SHHHHHH-HHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECC
T ss_pred chhHHHH-HHHHHHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCC
Confidence 9998544 444555566555554 2599999999999999999999999999998752 346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+ ++.+++.+.++ +++++|.||+||++++++..... ..+.++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 283 ~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g 354 (509)
T 3ivr_A 283 P---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354 (509)
T ss_dssp H---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES
T ss_pred h---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 7 88888888874 48999999999999866543322 2334599999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeec--CCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV--DDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~--dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
|++++|||++++.+.+.|. +|||+|||+|++|+||+++|+||. ||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 355 --~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~ 429 (509)
T 3ivr_A 355 --PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429 (509)
T ss_dssp --TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEECTTSCEEEEEEC--------------------------------
T ss_pred --CCccccccCCHHHhHHHhh---cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEE
Confidence 8999999999999988874 689999999999999999999999 999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|++++++..++.++++|++.++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+.
T Consensus 430 vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 430 VIGVPDPQWSEAIKAVCVCKPGESIA---ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccccccCcEEEEEEEeCCCCCCC---HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99999988899999999987765433 57899999999999999999999999999999999999999998754
No 24
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.4e-79 Score=709.63 Aligned_cols=511 Identities=18% Similarity=0.226 Sum_probs=323.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|.++++ ++||++|++...+. ..++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~-~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMK-RYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 57899999998 89999997622111 22578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ +.+..++.++.....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSCB-------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHHhhC----CCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999987642 2333333333 455666655432210
Q ss_pred CCCcccchhhccCCC----C---CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh--hCCCCCcE
Q 004034 361 QDGRDIWWQDVVPKY----P---TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 431 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~----~---~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~~~~~d~ 431 (778)
.....+.+.+... . ...+.....+++++||+|||||||.||||+++|++++.......... +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 0111222221110 0 11112223467899999999999999999999999655544332222 46788999
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCce
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sL 511 (778)
+++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....++++|
T Consensus 237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 309 (550)
T 3rix_A 237 ILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNL 309 (550)
T ss_dssp EEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTC
T ss_pred EEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccc
Confidence 9999999999984 677889999999999854 589999999999999999999999999998764 345678999
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCC
Q 004034 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGE 590 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g 590 (778)
|.+++|||++++++.+++.+.++. ..++|.||+||++++++..... ..+++++|+|+++++++|+|+ ++++++.|
T Consensus 310 r~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 310 HEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999873 3489999999999876654332 346789999999999999994 79999999
Q ss_pred eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 591 ~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+|
T Consensus 386 ~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 386 QRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC--------------------------
T ss_pred CCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 999999999 89999999999999887643 78999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCc-cccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
|+|.+|+|++++++..++.++++|+++++...+ .++|+++++++|++|+ +|..|+++++||+|+||||+|++|+++
T Consensus 462 p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceEEEEEeecCCCCceEEEEEEecCCCCCC---HHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 999999999999998899999999988765433 5789999999999885 455799999999999999999999999
Q ss_pred Hhcc
Q 004034 750 ASRQ 753 (778)
Q Consensus 750 ~~~~ 753 (778)
+.+.
T Consensus 539 ~~~~ 542 (550)
T 3rix_A 539 LIKA 542 (550)
T ss_dssp ----
T ss_pred HHhh
Confidence 8754
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.9e-78 Score=694.91 Aligned_cols=498 Identities=18% Similarity=0.223 Sum_probs=407.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQ-TQADFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCcceecC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 46789999998 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||++++......... ++.+...
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~---------------------~~~~~~~---------- 126 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS---------------------LVSLSEI---------- 126 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSE---------------------EEEHHHH----------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCc---------------------ccchhhh----------
Confidence 999999999999999999999999999999876542211110 1110000
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh--hCCCCCcEEEEeCCc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADC 438 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~~~~~d~~l~~~~~ 438 (778)
...........+.....++|+++|+|||||||.||||+++|++++... .+.... +++.+++++++..|+
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 197 (521)
T 3l8c_A 127 --------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFT-NWMIEDAAFDVPKQPQMLAQPPY 197 (521)
T ss_dssp --------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHH-HHHHHCTTTCCCSSCEEECCSCT
T ss_pred --------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHH-HHHhhccccCCCCCCeEEecCCc
Confidence 000000011112234578999999999999999999999999965443 333333 678889999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|+.+ ...++.+|..|+++++.+.. ...++..+++.+.++++|++.++|++++.++.... ....++++||.+++||
T Consensus 198 ~~~~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 198 SFDLS-VMYWAPTLALGGTLFALPKE-LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDG 273 (521)
T ss_dssp TSGGG-HHHHHHHHHTTCEEEECCGG-GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECS
T ss_pred cHHHH-HHHHHHHHhcCCEEEEcCHH-HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEec
Confidence 99887 56788899999999987642 23488999999999999999999999999887654 2345789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL 595 (778)
|++++++.+++.+.++ ++++++.||+||++++++...... .....+++|+|+++++++|+|++|++++.|+.|||
T Consensus 274 ~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl 351 (521)
T 3l8c_A 274 EELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351 (521)
T ss_dssp SCCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEE
T ss_pred ccCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEE
Confidence 9999999999999985 489999999999987654321111 11345689999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
+|+| |++++|||++++.+.+.|+. +.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.
T Consensus 352 ~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 429 (521)
T 3l8c_A 352 IVTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVA 429 (521)
T ss_dssp EEES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEE
T ss_pred Eecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcc
Confidence 9999 89999999999999988853 23579999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecC-CCCeEEEEEEEEcCCCCC----CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 675 EAAVVGVEHE-VKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 675 ea~Vv~~~~~-~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
+|+|++.+++ ..++.++|+|+++++... ..++.++|+++|+++||.|++|..|+++++||+|+||||||++|++.
T Consensus 430 ~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~ 509 (521)
T 3l8c_A 430 SAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509 (521)
T ss_dssp EEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHH
T ss_pred eEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhh
Confidence 9999988765 346889999999876421 12457899999999999999999999999999999999999999999
Q ss_pred Hhcc
Q 004034 750 ASRQ 753 (778)
Q Consensus 750 ~~~~ 753 (778)
+.++
T Consensus 510 ~~~~ 513 (521)
T 3l8c_A 510 VNNR 513 (521)
T ss_dssp TC--
T ss_pred hhcC
Confidence 8754
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=8.2e-78 Score=690.46 Aligned_cols=475 Identities=22% Similarity=0.326 Sum_probs=385.0
Q ss_pred HHHHHHHHhhhccCCC-eEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|.++++ ++|+ ++|+++. ++++||+||.++++++|+.|+ .|++|+|+++|++++++++|||++
T Consensus 23 tl~~~l~~~a~-~~p~d~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 23 SLFPALSPAPT-GAPADRPALRFG------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp -CCTTTSSCCC-SGGGGSEEEEET------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCCCCeEEEEC------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 45677778887 6776 9999986 689999999999999998874 488999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.++++++++++||+++..... ... ..+.. +.++..
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--------------~~~----~~~~~-~~~~~~--------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--------------PAL----GALER-VDVDVR--------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--------------GGG----TTSEE-EECCTT---------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--------------hhh----ccccc-cccccc---------
Confidence 99999999999999999999999999999998653210 000 11111 111100
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.....+.....++|++||+|||||||+||||+++|++++ +........+++.++|++++.+|++
T Consensus 143 ---------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 ---------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALA-TTLDALADAWQWTGEDVLVQGLPLF 206 (505)
T ss_dssp ---------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHH-HHHHHHHHHHTCCTTCEEEECCCTT
T ss_pred ---------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHH-HHHHHHHHHhCCCCCcEEEEeccHH
Confidence 001112234568999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc-ccccCCCCceeEEEEec
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~-~~~~~~l~sLr~v~~gG 518 (778)
|..++++.++.+|..|+++++.+. +++..+++.+ ++++|+++++|+++..|++.... ......++++|.+++||
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg 281 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECC
Confidence 999887789999999999999753 4889999999 88999999999999999874321 11223567899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCC---CeeeEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSGYL 595 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~---g~~GEL 595 (778)
|++++++.+++.+.++ ++++|.||+||++++++..... ....+++|+|++|++++|+|++|++++. |+.|||
T Consensus 282 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl 356 (505)
T 3nyq_A 282 AALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEI 356 (505)
T ss_dssp SCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEE
T ss_pred CCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEE
Confidence 9999999999999886 7899999999998765543322 3466889999999999999999999876 899999
Q ss_pred EEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeec-CCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV-DDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+ ||+||++|+||+|.|||++|.+||+|.
T Consensus 357 ~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~ 432 (505)
T 3nyq_A 357 QVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVR 432 (505)
T ss_dssp EEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred EEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCcc
Confidence 9999 89999999999999998864 789999999999999999999998 699999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+|+|++.+++..++.++|||++.+.. ..+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 433 ~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 433 EAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999999998899999999997632 222 578999999999999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-76 Score=678.01 Aligned_cols=495 Identities=20% Similarity=0.249 Sum_probs=382.2
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQ-QNGHHIAITDG------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHH-HHTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCceEEEeC------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 4567888888 89999999976 68999999999999999999987 89999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.++++++++++||+++..............+..... ........ .....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~ 136 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGR-----------DITTNGLL-----DNTMG 136 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeee-----------eccccccc-----ccccc
Confidence 999999999999999999999999999998775432211100000000000 00000000 00000
Q ss_pred CCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
............... .........++|++||+|||||||.||||+++|++++.. .......+++.++|++++.+|++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~~ 215 (501)
T 3ipl_A 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVLPIYH 215 (501)
T ss_dssp -------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHH-HHHHHHHTCCCTTCEEEECSCTTS
T ss_pred cccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHH-HHHHHHhhCCCccCEEEEeCcHHH
Confidence 000000000110000 011223457899999999999999999999999996544 445566789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.++. .++.+|+.|+++++.+. ++++.+++.|+++++|+++++|++++.|++.... ...+||.+++|||+
T Consensus 216 ~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 216 ISGLS-VLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGAK 285 (501)
T ss_dssp HHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSSC
T ss_pred HHHHH-HHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCCC
Confidence 99854 57889999999999864 5899999999999999999999999999987542 12389999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+++.+ ++ ++++|.||+||+++..+..........++++|+|+++++++|+|++ .|+.|||+|+|
T Consensus 286 l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g- 355 (501)
T 3ipl_A 286 LSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG- 355 (501)
T ss_dssp CCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES-
T ss_pred CCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec-
Confidence 99999999887 44 7899999999998755433222122356789999999999999975 45689999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|++++|||++++.+.. +. +|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 356 -~~~~~gY~~~~~~t~~--~~--~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 430 (501)
T 3ipl_A 356 -ANVMNGYLYPTDLTGT--FE--NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVG 430 (501)
T ss_dssp -TTSCSCCSBSTTCCCS--EE--TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCcChhhcch--hc--CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 8999999999987766 33 789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
.+++..++.++++|+..... + .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++...++
T Consensus 431 ~~~~~~g~~~~a~v~~~~~~--~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 431 HPDDTWGQVPKLYFVSESDI--S---KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEETTTEEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EecccCCceEEEEEEeCCCC--C---HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 99998899999999975443 2 57899999999999999999999999999999999999999987654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.4e-75 Score=681.41 Aligned_cols=513 Identities=17% Similarity=0.136 Sum_probs=307.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCC----CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEAND----PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~----~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
+.++|+++++ ++||++|+++.+.. ....+++||+||+++++++|+.|++.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETWAK-THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHHHH-HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 6788999999 89999999986421 1224899999999999999999999999 7999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|++|.++.+++.+++++++++++|+++........ .....++...
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~--------- 152 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTK--------- 152 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETT---------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeeccc---------
Confidence 9999999999999999999999999999999998764321100 0111111110
Q ss_pred ccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH-------hhCCCCCc
Q 004034 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPSD 430 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~-------~~~~~~~d 430 (778)
...+.+.+.............+++++||+|||||||.||||+++|++++......... .+.+...+
T Consensus 153 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 153 -------NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp -------CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred -------chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 0011111111111222234567889999999999999999999999965544332221 24577889
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCc
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~s 510 (778)
++++..++.|+.+ ...++.++..|+++++.+.. ..++.+++.++++++|++.++|++++.+.... .++++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~------~~~~~ 295 (562)
T 3ite_A 226 KFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP------EDAPH 295 (562)
T ss_dssp EEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG------GGSTT
T ss_pred eEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc------cccCc
Confidence 9999999999886 56788899999999986431 23567889999999999999999988874432 36789
Q ss_pred eeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCC
Q 004034 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG 589 (778)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~ 589 (778)
||.+++|||++++++.+++.+.++ +++++.||+||++..++...... ....+++|+|+++++++|+|+ .+++++.
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 999999999999999999887654 78999999999987554432221 235678999999999999996 6788999
Q ss_pred CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhc
Q 004034 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 669 (778)
Q Consensus 590 g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~ 669 (778)
|+.|||+|+| |++++|||++++.+...+ .+.++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+
T Consensus 372 g~~GEl~v~g--~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 448 (562)
T 3ite_A 372 GMAGELVIEG--SLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448 (562)
T ss_dssp TSCEEEEEES--TTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred CCceEEEEec--cccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh
Confidence 9999999999 899999999998765433 2223499999999999999999999999999999999999999999999
Q ss_pred C-CccceEEEEEEecCCCCeEEEEEEEEcCCCCCC----------HHHHHHHHHHHHhhcCCCccccEEEECCCCCCC-C
Q 004034 670 H-PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT-R 737 (778)
Q Consensus 670 ~-p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~----------~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T-~ 737 (778)
| |.|.+++|++.+++..++..+++++...+.... ..+.++|+++|+++||.||+|+.|+++++||+| +
T Consensus 449 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~ 528 (562)
T 3ite_A 449 LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDT 528 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCC
Confidence 8 888899999888887776666555554332211 123468999999999999999999999999998 8
Q ss_pred CCcccHHHHHHHHhccc--CcCCCCCCCCChh
Q 004034 738 SGKIMRRILRKIASRQL--DELGDTSTLADPG 767 (778)
Q Consensus 738 sGKi~R~~L~~~~~~~~--~~~~~~~~~~~~~ 767 (778)
+|||+|++|++++.+.. +-.++.+++.||.
T Consensus 529 ~GKi~r~~L~~~~~~~~~~~~~~~~s~~~~~p 560 (562)
T 3ite_A 529 SAKTDAKALEHMFHTLSLGELFGESSSLVNKP 560 (562)
T ss_dssp --------------------------------
T ss_pred CCcchHHHHHHHHhccCHHHHhccCccccCCC
Confidence 99999999999987542 1134556666653
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.2e-74 Score=675.43 Aligned_cols=510 Identities=17% Similarity=0.173 Sum_probs=405.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+. +.++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRAL-HSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHH-HCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 47899999998 8999999998642 23689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCC---CHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEEccCCccccc
Q 004034 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRE 356 (778)
Q Consensus 281 Gav~vpl~p~~---~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (778)
|++++|++|.+ +.+++.++++++++++++++..... .+.... ... +....+..+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~-------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---------KFTADELNTN----PKFLKIPAIA-------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHH---------HHCC-----C----CEETTEEEEE--------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHH---------HHHHhhhhhc----ccccccceee--------
Confidence 99999999988 4578999999999999998754310 000000 000 1111111110
Q ss_pred cccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
+.+.........+.....++|++||+|||||||.||||+++|++++.+ .......+++.++|++++++
T Consensus 148 -----------~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~ 215 (590)
T 3kxw_A 148 -----------LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDN-LNKIFTSFHMNDETIIFSWL 215 (590)
T ss_dssp -----------GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHH-HHHHHHHTTCCTTCEEEECS
T ss_pred -----------chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHH-HHHHHHhhCCCCcCeEEEec
Confidence 000000001112233567899999999999999999999999996544 44556678999999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC-cccccCCCCceeEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN-EYVTRYSRKSLRVLG 515 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~-~~~~~~~l~sLr~v~ 515 (778)
|++|++|+...++.+|+.|+++++.+......++..+++.|+++++|++.++|++++.|++... ......++++||.++
T Consensus 216 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp CTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred CCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 9999998666688999999999997542111268899999999999999999999999887532 123456789999999
Q ss_pred EecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCC-------------------------CCCCCCCC
Q 004034 516 SVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGS 567 (778)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~-------------------------~~~~~~~~ 567 (778)
+|||++++++.+++.+.++. .++++++.||+||++++++..... ......++
T Consensus 296 ~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (590)
T 3kxw_A 296 NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375 (590)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEEC
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEec
Confidence 99999999999999998742 235799999999999876643211 01123468
Q ss_pred cCcCcCCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC----CCC--eEEcCcEEEEecCCe
Q 004034 568 ATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCSRDKDGY 640 (778)
Q Consensus 568 ~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~----~~G--~yrTGDl~~~~~dG~ 640 (778)
+|+|+++ ++|+|++ +++++.|+.|||+|+| |++++|||++++.+.+.|... .+| ||+|||+|++| ||+
T Consensus 376 ~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~ 450 (590)
T 3kxw_A 376 SGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450 (590)
T ss_dssp CCEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred cCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence 8999998 7889976 8999999999999999 899999999999998887541 124 99999999999 999
Q ss_pred EEEEeecCCEEEeCceeeCHHHHHHHH-hcCCccc--eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh
Q 004034 641 HWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 717 (778)
Q Consensus 641 l~~~GR~dd~Iki~G~rI~~~eIE~~L-~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~ 717 (778)
|+|+||+||+||++|+||+|.|||++| ..||.|. +|+|++++++. ++.++++|++.++... +...++|+++|++.
T Consensus 451 l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD-DVAQDNLFNEIFEL 528 (590)
T ss_dssp EEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC-HHHHHHHHHHHHHH
T ss_pred EEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc-chhHHHHHHHHHHH
Confidence 999999999999999999999999999 7899999 89999998875 7889999998765422 22356677777777
Q ss_pred cCC-Ccccc-E--EEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 718 IGA-FAAPD-K--IHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 718 Lp~-~~~P~-~--i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|+. +++|. . ++.+++||+|+||||+|++|++++.+.
T Consensus 529 l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 529 VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 764 66664 3 444589999999999999999998754
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.9e-73 Score=663.89 Aligned_cols=506 Identities=21% Similarity=0.235 Sum_probs=408.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+|+.+++... .+.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 22 tl~~~l~~~a~-~~p~~~~~~~~---~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 22 TLVDALDYAAL-SSAGMNFYDRR---CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp SHHHHHHHHTT-SSCEEEEECTT---SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhh-CCCCeEEeCCC---CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 68899999998 89998776432 234689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCC-------HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcc
Q 004034 281 GAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353 (778)
Q Consensus 281 Gav~vpl~p~~~-------~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 353 (778)
|++++|+++.++ .+++.++++++++++||++++.. ..+....... +.. .++..
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~-~~~~~------ 157 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL---------PLVNAATHDN----PEL-HVLSH------ 157 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHGGGC----TTC-EEEEH------
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH---------HHHHHhhccC----Ccc-eecch------
Confidence 999999999999 89999999999999999987642 2222221111 111 11110
Q ss_pred ccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEE
Q 004034 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYW 433 (778)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l 433 (778)
.+.+.... ...+.....+++++||+|||||||.||||+++|++++.+........+++.++|+++
T Consensus 158 -------------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l 222 (576)
T 3gqw_A 158 -------------AWFKALPE--ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCV 222 (576)
T ss_dssp -------------HHHHTSCC--CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEE
T ss_pred -------------hhhhcccc--cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEE
Confidence 01111111 111223456899999999999999999999999997665544444447899999999
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc-ccccCCCCcee
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLR 512 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~-~~~~~~l~sLr 512 (778)
+.+|++|+.|+...++.++..|+++++.......+++..+++.|+++++|+++++|++++.+.+.... .....++++||
T Consensus 223 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr 302 (576)
T 3gqw_A 223 SWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWR 302 (576)
T ss_dssp ECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCC
T ss_pred EcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhH
Confidence 99999999997777888999999998875422224788999999999999999999999988765432 12345789999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCC----------------CC----------
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW----------------PQ---------- 563 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~----------------~~---------- 563 (778)
.+++|||++++++++++.+.++. .++++++.||+||++.+++....... ..
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 99999999999999999998742 13789999999999987654321100 00
Q ss_pred CCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEE
Q 004034 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWL 643 (778)
Q Consensus 564 ~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~ 643 (778)
...++|+|+++++++|+|++|++++.|+.|||+|+| |++++|||++++.+...+ .+|||+|||+|++ +||+|+|
T Consensus 383 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGDl~~~-~dG~l~~ 456 (576)
T 3gqw_A 383 TFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISG--PSLMSGYFGDQVSQDEIA---ATGWLDTGDLGYL-LDGYLYV 456 (576)
T ss_dssp EEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHH---HHSCEEEEEEEEE-ETTEEEE
T ss_pred ceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeC--ccccccccCCcccccccc---CCCeeeccceEEE-ECCEEEE
Confidence 123799999999999999999999999999999999 899999999998776643 2689999999999 7999999
Q ss_pred EeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhc-CCCc
Q 004034 644 TGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFA 722 (778)
Q Consensus 644 ~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~L-p~~~ 722 (778)
+||+||+||++|+||+|.|||++|.+||+|.+++|++..++. +.++++++.... .+...+++++++++++ +.|+
T Consensus 457 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~ 531 (576)
T 3gqw_A 457 TGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRIS---DEERRGQLIHALAARIQSEFG 531 (576)
T ss_dssp EEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCC---CHHHHHHHHHHHHHHHHHHHS
T ss_pred EecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecC---chhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887763 345555554432 2344678888888888 7899
Q ss_pred cccEEEECC--CCCCCCCCcccHHHHHHHHhcccCc
Q 004034 723 APDKIHWAP--GLPKTRSGKIMRRILRKIASRQLDE 756 (778)
Q Consensus 723 ~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~~~~ 756 (778)
+|..+.+++ +||+|++|||+|++|++++.++..+
T Consensus 532 ~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 532 VTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp CCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred CceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 999998887 8999999999999999999876543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.5e-59 Score=535.56 Aligned_cols=406 Identities=19% Similarity=0.210 Sum_probs=314.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcC---CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
++.++|+++++ ++||++|+++.+. ..+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~-~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACAR-LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 47899999998 8999999998752 11234899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCEEEeCCC---CCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 278 l~~Gav~vpl~p---~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
+++|++++|+++ .++.+++.++|+++++++||+++... ..+.+...... ......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRP--GESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccc--cccccceeEecccc---
Confidence 999999999999 88899999999999999999987642 11111110000 00011222222110
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCC------
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~------ 428 (778)
.......+.....+++++||+|||||||+||||+++|++++.+. ......+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNF-EQLMSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHH-HHHHHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHH-HHHHHHhccccccCCCC
Confidence 01111223345678999999999999999999999999965544 44455677776
Q ss_pred CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcC--CcccccC
Q 004034 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (778)
Q Consensus 429 ~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~--~~~~~~~ 506 (778)
+|++++.+|++|++|+++.++.+|+.|+++++.+.....+++..+++.++++++| +.++|+++..++... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 8999999999999998888999999999999975321113789999999999999 788888888777532 1123456
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCC----------------------
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~---------------------- 561 (778)
++++||.+++|||++++++++++.+.++. .++.+++.||+||++.+++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 78999999999999999999999998852 24679999999999987665433210
Q ss_pred -CCCCCCcCcCcCCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC---------CCCCeEEcC
Q 004034 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTG 630 (778)
Q Consensus 562 -~~~~~~~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~---------~~~G~yrTG 630 (778)
....+++|+|++ ++++|+|++ |++++.|+.|||+|+| |++++|||++++.+.+.|.. +.+||||||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 123468999999 999999976 7999999999999999 89999999999999988841 135699999
Q ss_pred cEEEEecCCeEEEEee
Q 004034 631 DGCSRDKDGYHWLTGR 646 (778)
Q Consensus 631 Dl~~~~~dG~l~~~GR 646 (778)
|+|++| ||+|+|+||
T Consensus 466 Dlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 466 DSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEE-TTEEEECC-
T ss_pred ceeeEE-CCEEEEeCC
Confidence 999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.8e-54 Score=472.58 Aligned_cols=315 Identities=20% Similarity=0.216 Sum_probs=266.2
Q ss_pred CCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCC
Q 004034 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (778)
Q Consensus 386 ~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~ 465 (778)
.+|+|||+|||||||+||||+++|++++ +........+++.++|++++.+|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLA-ASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHH-HHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 4789999999999999999999999954 445556677999999999999999999984 5678899999999998642
Q ss_pred CCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccc
Q 004034 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (778)
Q Consensus 466 ~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 545 (778)
.+ .++.|+++++|++.++|++++.|++.... ..++++||.+++|||++++++.+++.+. + +++++.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~~-~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISDL-A---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHTC-S---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheeccccc-C---ceEEeccc
Confidence 12 35678999999999999999999987642 3468999999999999999999998763 3 78999999
Q ss_pred cccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC
Q 004034 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (778)
Q Consensus 546 ~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G 625 (778)
+||+++.++..... ....+.+|.+.||+++.+.+ .|||+++|++ . .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~--~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISGAV--T------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEESGG--G------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEeccc--c------------------cCc
Confidence 99998866554332 23567889999998877643 5999999831 1 267
Q ss_pred eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHH---hcCCccceEEEE-EEecCCCCeEEEEEEEEcCCCC
Q 004034 626 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL---VSHPQCAEAAVV-GVEHEVKGQGIYAFVTLVEGVP 701 (778)
Q Consensus 626 ~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L---~~~p~V~ea~Vv-~~~~~~~~~~lva~Vv~~~~~~ 701 (778)
||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++| .+||+|.+|+|+ +.+|+..++.++|+|+....
T Consensus 229 ~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-- 305 (358)
T 4gs5_A 229 TVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-- 305 (358)
T ss_dssp CEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--
T ss_pred ceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--
Confidence 99999999999998 667799999999999999999999877 468999999886 66788888999999876432
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 702 ~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+...++|+++|+++||.||+|+.|+++++||+|++|||+|++|++.+.+
T Consensus 306 --~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred --CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4456899999999999999999999999999999999999999998764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.8e-49 Score=445.35 Aligned_cols=332 Identities=19% Similarity=0.185 Sum_probs=267.8
Q ss_pred ccCC-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHH--HHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEE
Q 004034 383 WVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 383 ~~~~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlv 459 (778)
..++ +++++|+|||||||.||||+++|+++....... ....+++.++|++++..|++|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 889999999999999999999999964433222 2234688999999999999877776777889999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcc
Q 004034 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (778)
Q Consensus 460 l~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (778)
+.+. .+++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.+| ++
T Consensus 161 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 233 (436)
T 3qov_A 161 PAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VK 233 (436)
T ss_dssp CCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---cc
Confidence 8754 3889999999999999999999999999876432122224789999999999999999999999986 78
Q ss_pred eecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeeeEEEEecCCCcccccccCChhhhhh
Q 004034 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (778)
Q Consensus 540 i~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~ 617 (778)
++|.||+||+++. +..... .....+.|.+++.++|+| ++|++++.|+.|||+|+|+ . ..
T Consensus 234 v~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~--~------------~~ 294 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL--D------------RE 294 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES--S------------CC
T ss_pred EEecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc--C------------cC
Confidence 9999999999654 332221 122367788899999999 6899999999999999992 1 11
Q ss_pred hccCCCCCeEEcCcEEEEecCC------e---EEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCe
Q 004034 618 TYFKPFPGYYFTGDGCSRDKDG------Y---HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 618 ~~~~~~~G~yrTGDl~~~~~dG------~---l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 688 (778)
. + ..+||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++
T Consensus 295 ~-~--~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~ 371 (436)
T 3qov_A 295 M-M--PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQD 371 (436)
T ss_dssp S-S--CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEE
T ss_pred C-c--eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCc
Confidence 1 1 25799999999999998 5 699999999999999999999999999999999999999999888889
Q ss_pred EEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCC-ccccEEEECC--CCCCCCCCcccHHH
Q 004034 689 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAF-AAPDKIHWAP--GLPKTRSGKIMRRI 745 (778)
Q Consensus 689 ~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~--~lP~T~sGKi~R~~ 745 (778)
.++|+|+++ +...+ ....++++++|++.|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 999999998 54332 222466777777778777 8999999999 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.6e-48 Score=438.36 Aligned_cols=336 Identities=20% Similarity=0.180 Sum_probs=270.4
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
..+++++++|+|||||||+||||+++|+++...... .....+++.++|++++..|+++..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 356789999999999999999999999995443322 122357889999999999996444445667889999999988
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i 540 (778)
.+. .+++.+++.|+++++|++.++|+++..|++..........+++||.+++|||++++++.+++.+.+| +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 754 3899999999999999999999999999875321111112479999999999999999999999886 789
Q ss_pred ecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 541 ~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
++.||+||+++. +...... .....+.|.+++.++|+|+ +|++++.|+.|||+|+|. . ...
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~--t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL--T------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC--C------------ccc
Confidence 999999998543 3322221 1112455778999999995 699999999999999982 1 111
Q ss_pred ccCCCCCeEEcCcEEEEecC-CeE-----EEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEE
Q 004034 619 YFKPFPGYYFTGDGCSRDKD-GYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~d-G~l-----~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 692 (778)
+ ..+||+|||+|++++| |++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+++
T Consensus 303 ~---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 303 M---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp S---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred C---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 1 2579999999999999 987 899999999999999999999999999999999999999988777889999
Q ss_pred EEEEcC--CCCCCHHHHHHHHHHHHhhcCCCc-cccEEEEC--CCCCCCCCCcccHHHH
Q 004034 693 FVTLVE--GVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRIL 746 (778)
Q Consensus 693 ~Vv~~~--~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~T~sGKi~R~~L 746 (778)
+|++.+ +........++|+++|+++|+.|+ +|..|.++ ++||+|++||++|+..
T Consensus 380 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 380 AVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 999875 322122235778888999998875 89888887 5999999999999753
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=8.7e-48 Score=433.28 Aligned_cols=334 Identities=19% Similarity=0.132 Sum_probs=269.7
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
..+++++++|+|||||||.||||+++|+++...... .....+++.++|++++..|+++..+....++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 346789999999999999999999999995543322 122357889999999999985433335567889999999987
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i 540 (778)
.+. .+++.+++.|+++++|+++++|+++..|.+..........+++||.+++|||++++++.+++.+.+| +++
T Consensus 166 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 238 (437)
T 2y27_A 166 FGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---IDA 238 (437)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SEE
T ss_pred CCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cCE
Confidence 654 3899999999999999999999999999875321111112478999999999999999999999886 789
Q ss_pred ecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 541 ~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
++.||+||+++. +...... .....+.|.+++.++|+|+ +|++++.|+.|||+|+|. . .+.
T Consensus 239 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--t------------~~~ 300 (437)
T 2y27_A 239 VDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL--T------------KEA 300 (437)
T ss_dssp EEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC--C------------cCC
Confidence 999999998543 3322221 1112566778999999995 699999999999999982 1 111
Q ss_pred ccCCCCCeEEcCcEEEEec-CCeE-----EEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEE
Q 004034 619 YFKPFPGYYFTGDGCSRDK-DGYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~-dG~l-----~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 692 (778)
+ ..+||+|||+|++++ ||++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++|
T Consensus 301 ~---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 301 L---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp S---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred c---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 1 257999999999999 6986 899999999999999999999999999999999999999988777889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhcCCCc-cccEEEEC--CCCCCCCCCcccHHH
Q 004034 693 FVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRI 745 (778)
Q Consensus 693 ~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~T~sGKi~R~~ 745 (778)
+|++.++........++|+++|+++|+.|+ +|..|.++ ++||+|+ ||++|+.
T Consensus 378 ~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 999876643222235778889999999884 89888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.7e-30 Score=281.33 Aligned_cols=238 Identities=15% Similarity=0.087 Sum_probs=175.9
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH--HHHhhCCCCCcEEEEeCCc-chhhhhhHHHHHHHhcCcEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~-~~~~g~~~~i~~~L~~G~tlv 459 (778)
.++++++++|+|||||||+||||+++|+++....... ....+++.++|++++..|+ .|+.+. ...+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 3478999999999999999999999999955443321 2235677889999999999 787774 45566789999 55
Q ss_pred EEcCCCCCCChh-----------------------HHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 460 l~~~~~~~~~~~-----------------------~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
+... ++|. .+++.|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5432 3666 78889999999999999999999987632 22345689999999
Q ss_pred ecCCCCHHHHHHHH-HHhCCCCcceecccccccccceecccCCCCCCCCCC-CcCcC------cCCceEEEECC-CCcee
Q 004034 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (778)
Q Consensus 517 gGe~l~~~~~~~~~-~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~-~~G~p------~~g~~~~Ivd~-~g~~~ 587 (778)
|||++++++.+++. +.++ +++++|.||+||+++++.. .+. ++|+| +++++++|+|+ +|+++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~--------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRS--------LLITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEE--------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceec--------cccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8884 4899999999999865531 122 48999 99999999998 99999
Q ss_pred CCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecC--C-------eEEEEeecCCEEEeCce
Q 004034 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD--G-------YHWLTGRVDDVINVSGH 656 (778)
Q Consensus 588 ~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~d--G-------~l~~~GR~dd~Iki~G~ 656 (778)
+.|+.|||+|++. .+ ..++ -.|+|||++++.+. | .+..++|.|+++||.|.
T Consensus 309 p~G~~GEl~vt~l----~~----------~~~l----~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYGERGNVIVTHL----SP----------WAFY----PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTTCEEEEEEEEE----ET----------TEEE----EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCCceEEEEEEc----Cc----------cccc----ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999999999981 11 1111 15999999998653 3 46778899999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.63 E-value=5.8e-16 Score=138.26 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=75.1
Q ss_pred eecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCH----HHHHHHHHHHHhhcCC
Q 004034 645 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGA 720 (778)
Q Consensus 645 GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~----~l~~~l~~~l~~~Lp~ 720 (778)
.|+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.+.++|+..++...+. ++.++|++.+++.+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g- 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL- 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC-
Confidence 489999999999999999999999999999999999999988999999999987765543 344556666666553
Q ss_pred CccccEEEEC--CCCCCCCCCcccH
Q 004034 721 FAAPDKIHWA--PGLPKTRSGKIMR 743 (778)
Q Consensus 721 ~~~P~~i~~v--~~lP~T~sGKi~R 743 (778)
+|..+.++ ++||+| +||++|
T Consensus 80 --v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 --VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp --SCCEEEEECTTCSCCC----CCC
T ss_pred --CccceEEEcCCeecCC-CCCcch
Confidence 34455565 489999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.57 E-value=7.5e-15 Score=130.86 Aligned_cols=95 Identities=20% Similarity=0.331 Sum_probs=76.2
Q ss_pred eecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCC-----CHHHHHHHHHHHHhhcC
Q 004034 645 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY-----SEELRKSLVLAVRKQIG 719 (778)
Q Consensus 645 GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~-----~~~l~~~l~~~l~~~Lp 719 (778)
||.||+||++|++|+|.|||++|.+||+|.++++++++++.+++.++++|++ ++... .+++.++|+++|++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999888887778999999998 55321 24566777787877663
Q ss_pred CCccccEEEECC--CCCCCCCCcccHH
Q 004034 720 AFAAPDKIHWAP--GLPKTRSGKIMRR 744 (778)
Q Consensus 720 ~~~~P~~i~~v~--~lP~T~sGKi~R~ 744 (778)
+|..+.+++ .||+| +||++|.
T Consensus 80 ---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 ---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ---SCCEEEEECTTCSCCC----CCCE
T ss_pred ---CceEEEEECCCCccCC-CCceEEE
Confidence 334788887 89999 9999873
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.81 E-value=6.8e-08 Score=109.52 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=84.7
Q ss_pred CCc---eeEEEEecCCCCHHHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCc-CcCCc-eEEEEC
Q 004034 508 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGV-QPVIVD 581 (778)
Q Consensus 508 l~s---Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~g~~~~~~~~~~~~~~~~~~G~-p~~g~-~~~Ivd 581 (778)
++. +..++.||- ..-...++..+| +.+++ ..|++||. .+.+ +.... ..+...+. .+++. -.+.++
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi-~~~p~--~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCN--DLPLVSTTYGSSET-TFGI-NLDPL--CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--TCCEECCEEECSSC-EEEE-CSCTT--SCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcC--CCccccCccccccc-eeee-ccCCC--CCcccCceeecCCcEEEEEEe
Confidence 466 555555662 223345555565 37777 99999995 3332 21111 01111222 22332 223342
Q ss_pred --CC-------CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEec----CCeEEEEeecC
Q 004034 582 --EK-------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYHWLTGRVD 648 (778)
Q Consensus 582 --~~-------g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~----dG~l~~~GR~d 648 (778)
+. ...+..|+.+||+|+.. . |.| -|++||++++.. ...+.|+||.+
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~-~----GL~----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~ 425 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF-A----GLY----------------RMRVGDIVLVTGFYNNAPQFKFVRREN 425 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS-S----SCC----------------SEECCEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec-c----cee----------------eEEcCCEEEEcccCCCCcEEEEEEecC
Confidence 21 13467899999999981 1 111 399999999986 46899999999
Q ss_pred CEEEeCceeeCHHHHHHHHhcC
Q 004034 649 DVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 649 d~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+++++.|.++...+||++|.+.
T Consensus 426 ~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 426 VVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEECSSSCCEEHHHHHHHHHHC
T ss_pred CEEEeeeeECCHHHHHHHHHHH
Confidence 9999999999999999999854
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.64 E-value=4.2e-07 Score=103.18 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=65.3
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEec----CCeEEEEeecCCEEEeCceeeCH
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYHWLTGRVDDVINVSGHRIGT 660 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G~rI~~ 660 (778)
.+++.|+.+||+|+.. .|+| -|++||+++++. ...|.|+||.+++|++.|.+|..
T Consensus 391 ~eVe~G~~YelViTt~-----~GL~----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~ 449 (609)
T 4b2g_A 391 AHVEVGKEYELVITTY-----AGLY----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE 449 (609)
T ss_dssp GGCCTTCEEEEEEECT-----TSCC----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred hHcCCCCeEEEehhhh-----hhhh----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence 3577999999999871 1222 299999999984 46899999999999999999999
Q ss_pred HHHHHHHhcC------C--ccceEEEEEEecCCCCeEEEEEEEEc
Q 004034 661 AEVESALVSH------P--QCAEAAVVGVEHEVKGQGIYAFVTLV 697 (778)
Q Consensus 661 ~eIE~~L~~~------p--~V~ea~Vv~~~~~~~~~~lva~Vv~~ 697 (778)
.+||++|.+. . .|.|-.+..- .......-+.|+.+.
T Consensus 450 ~~v~~av~~a~~~l~~~g~~l~eft~~~d-~~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 450 AELQKAVDNASKLLREVNTSVVEYTSFAD-TKTIPGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHHHHHHGGGGTTEEEEEEEEEEE-CSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCeEEEEEEecC-CCCCCCcEEEEEEEe
Confidence 9999999832 2 3455555422 222223455566654
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.63 E-value=8.4e-07 Score=100.33 Aligned_cols=161 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred CCceeEE--EEecCCCCHHHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCc-CcCCce-EEEE--
Q 004034 508 RKSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGVQ-PVIV-- 580 (778)
Q Consensus 508 l~sLr~v--~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~g~~~~~~~~~~~~~~~~~~G~-p~~g~~-~~Iv-- 580 (778)
++.|+.| +.+|.. ..-...+...+| +.+++ ..|++||. .+.+ +.... ..++..+. .+++.. .+.+
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi-~~~p~--~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAG--DLPLVSHDYGSSEG-WIAA-NVTPR--LSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHT--TSCEEECCEEETTE-EEEE-CCCTT--SCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcC--CCccccCceeccce-eeee-ecCCC--CCccccceeecCCcEEEEEEec
Confidence 5677533 344422 222345555565 36777 99999995 3333 22111 11111222 233321 1223
Q ss_pred CCC---------CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecC----CeEEEEeec
Q 004034 581 DEK---------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD----GYHWLTGRV 647 (778)
Q Consensus 581 d~~---------g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~d----G~l~~~GR~ 647 (778)
|+. ...++.|+.+||+|+.. + |.| -|++||++++..- ..+.|+||.
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~--~---GL~----------------RYr~GD~v~v~g~~~~~p~~~~~gR~ 431 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNY--A---GLY----------------RYRLGDVVKVIGFYNNTPQLKFICRR 431 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEEST--T---SCS----------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeec--c---cee----------------eEEcCCEEEEecccCCCcEEEEEeec
Confidence 221 13477899999999981 1 111 3999999999753 579999999
Q ss_pred CCEEEeCceeeCHHHHHHHHhc------CC--ccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 648 DDVINVSGHRIGTAEVESALVS------HP--QCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 648 dd~Iki~G~rI~~~eIE~~L~~------~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
++++++.|.++...+||++|.+ .. .|.|-.+... .......-+.|+.+..
T Consensus 432 ~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d-~~~~p~hyv~~wE~~~ 489 (581)
T 4epl_A 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID-VSTDPGHYAIFWEISG 489 (581)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE-CSSSSCEEEEEEEESS
T ss_pred CCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC-CCCCCCcEEEEEeecC
Confidence 9999999999999999999974 22 3666665542 2222234555667653
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=92.37 E-value=0.0088 Score=67.60 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHH
Q 004034 104 AGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADI 163 (778)
Q Consensus 104 ~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~ 163 (778)
.++|||.+.+. +.++.+...++|++++|+++++++++++|..+|++++++|++.++++
T Consensus 460 ~~~~~L~l~~~--~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l 517 (520)
T 2jgp_A 460 HAKFDLTFSAT--EEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEI 517 (520)
T ss_dssp BCSSSEEEEEE--ECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGC
T ss_pred ceeeeeEEEEE--ECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhc
Confidence 68999998877 45577888999999999999999999999999999999999887665
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=89.23 E-value=0.033 Score=62.33 Aligned_cols=59 Identities=10% Similarity=-0.107 Sum_probs=43.1
Q ss_pred CCCccc---hhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 004034 103 GAGKIS---RLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (778)
Q Consensus 103 ~~akfd---l~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~ 164 (778)
++++|| |.+.+. +.++.+...+.|++++| ++++.+++++|..+|++++++|++.++++.
T Consensus 408 ~~~~~~~~~l~l~v~--~~~~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVG--ELGEDMVIVLDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEE--EETTEEEEEEEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEE--EeCCeEEEEEEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 346788 877766 44677889999999999 999999999999999999999999888774
No 44
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=86.01 E-value=0.073 Score=58.84 Aligned_cols=56 Identities=5% Similarity=-0.080 Sum_probs=47.5
Q ss_pred CCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHH
Q 004034 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFW 160 (778)
Q Consensus 103 ~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~ 160 (778)
..++|||.+.+. +.++.+...++|++++|+++++.+++++|.++|++++++|+..-
T Consensus 406 ~~~~~~l~~~~~--~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~~ 461 (466)
T 2xhg_A 406 SEVYTALNITGL--IEGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQSH 461 (466)
T ss_dssp SBCCCSEEEEEE--EETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEE--EECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345788887765 44567888999999999999999999999999999999997643
No 45
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=85.79 E-value=3.5 Score=44.75 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=75.5
Q ss_pred CCCeEEEE-EEcCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCC
Q 004034 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~ 288 (778)
.++.+|.+ +....+|. ...+|.+.+...+..++..+...|+.++|++..++|.. ...+..+++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 45666644 33222222 34689999998888888888889999999999998863 333456788899999988765
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ ...+++...+++.++.+++..+..
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 5 588999999999999999987653
No 46
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=85.43 E-value=3.8 Score=44.63 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCeEEE-EEEcCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCC
Q 004034 214 LGDKVAI-YWEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al-~~~~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~ 288 (778)
.++.+|. ++....+|. .-.+|.+.+...+..++..+...|+.++|++..+++.+ ...+..+++++..|+..+++.
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 3455553 344333232 34689999998888888888889999999999998864 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ ...+++...+++.++.+++..+..
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 5 488999999999999999987653
No 47
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=83.81 E-value=4.2 Score=44.15 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=75.5
Q ss_pred CeEEEEEE-cCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCCCC
Q 004034 216 DKVAIYWE-ANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (778)
Q Consensus 216 d~~Al~~~-~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~p~ 290 (778)
+.+|.+.. ...+|. .-.+|.+.+...+..++..+...|+.++|++..++|-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 66675543 222222 34689999999999999888889999999999998753 4445567888999998887655
Q ss_pred CCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 291 FSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 291 ~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
..++++...+++.++.+++..+..
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH
Confidence 477899999999999999877643
No 48
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=80.02 E-value=0.16 Score=55.58 Aligned_cols=55 Identities=5% Similarity=-0.036 Sum_probs=48.1
Q ss_pred chhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhC---HHHHHHHH
Q 004034 108 SRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (778)
Q Consensus 108 dl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~~ 163 (778)
||.+.+... .++.+...++|++++|+++++.+++++|..+|++++++ |+++++++
T Consensus 361 ~l~l~v~~~-~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 361 GINFTFRGS-PQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp SEEEEEEEC-TTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred ceEEEEEec-CCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 777776521 24667889999999999999999999999999999999 99999998
No 49
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.63 E-value=36 Score=37.41 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=69.1
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++. .+..+|.+.+...... ..-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM--IELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCCEEEecC
Confidence 467777664 1246788774332221 122245889999999988877543 567889999999999886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~ 494 (778)
.. ...+++..+++.-++..+++.+.....
T Consensus 88 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 88 YR---LNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TT---SCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CC---CCHHHHHHHHHhcCceEEEECcchhhh
Confidence 43 377889999999999999988766554
No 50
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=64.49 E-value=12 Score=39.26 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=60.4
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCh--HHHHHHHHHHHhCCEEEeCCCCCCHH--------------
Q 004034 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM--ELPIAMLACARIGAVHSVVFAGFSSD-------------- 294 (778)
Q Consensus 231 ~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~--e~vva~LA~l~~Gav~vpl~p~~~~~-------------- 294 (778)
..+|.+.+...+..++..+...|+.++|++..++|-+. --....++++..|+..++. .+.+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 45788999888887777777889999999999998732 2334445558899955553 34454
Q ss_pred ---------HHHHHHHhcCCcEEEEcCCc
Q 004034 295 ---------SLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 295 ---------~l~~~l~~~~~~~iit~~~~ 314 (778)
++...+++.++.++++.+..
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 66668889999998877653
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=64.31 E-value=87 Score=34.67 Aligned_cols=106 Identities=9% Similarity=-0.111 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCC-CCCCceEEEccchHHHHH--HHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 385 DAEDPLFLLYTSGS-TGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 385 ~~~d~a~Il~TSGS-TG~PKgV~~th~~~l~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
.|+.+|++....+. .+.. -.+|.+.+.... ....-...++.++|++...++-+... +..+++.+..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEFP--ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCSSC--SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccccccc--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEcc
Confidence 47788877553211 1222 346666643222 12222346899999999988877653 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHh
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~ 497 (778)
+.. ...+++..+++..+++.+++.+.....+..
T Consensus 108 ~~~---~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPM---YKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTT---CCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 643 377899999999999999998876665544
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=61.68 E-value=22 Score=39.62 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcC
Q 004034 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (778)
Q Consensus 386 ~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~ 463 (778)
|+.++.+.+..+.++ ..+|.+.+..... ...-...++.++|++...++-+... +..+++++..|+..+..+.
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecCC
Confidence 455665544444333 3577776432221 1222246899999999988876543 5678899999999998864
Q ss_pred CCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 464 ~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
. ...+++..+++..+++++++.+..+..+...
T Consensus 108 ~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 108 I---YNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp T---CCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred c---CCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 3 3778999999999999999988776665543
No 53
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=58.61 E-value=1.7e+02 Score=30.11 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCC-------CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~-------~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+..+.-..+ ..++...|+.++.++.. ...+.++..+++.++++|+...-....+...+..+
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~- 181 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEE- 181 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHH-
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHH-
Confidence 57899988766655543 33556788866665542 77899999998678888876655444444443222
Q ss_pred HHHHHHHHhhcCCCccEEEEEccC
Q 004034 327 VDAALDECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 327 ~~~~~~~~~~~~~~~~~vi~~~~~ 350 (778)
+.+..+.+.+. ...+++|..
T Consensus 182 l~~i~~~~~~~----~~~li~De~ 201 (391)
T 3dzz_A 182 VKRIAELCAKH----QVLLISDEI 201 (391)
T ss_dssp HHHHHHHHHHT----TCEEEEECT
T ss_pred HHHHHHHHHHC----CCEEEEecc
Confidence 44444444221 234555554
No 54
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=58.55 E-value=85 Score=34.19 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=70.6
Q ss_pred cCCCeEEEEEEcC-CCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH-HHHHHHHHHhCCEEEeCC
Q 004034 213 GLGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVF 288 (778)
Q Consensus 213 ~~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~-vva~LA~l~~Gav~vpl~ 288 (778)
..|+.+|++.... .+| ..-.+|.+.+...+..++. ..++.++|++..++|-.-.+ +..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 3567777665432 222 2356899988877666553 45899999999988876433 334678888999877765
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCC
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
.+.++++...+++.++.++.+.+.
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHH
Confidence 578999999999999999998754
No 55
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=57.95 E-value=87 Score=34.58 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCCeEEEEEEcC-CCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH--H-HHHHHHHhCCEEEeC
Q 004034 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP--I-AMLACARIGAVHSVV 287 (778)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v--v-a~LA~l~~Gav~vpl 287 (778)
.|+.+|++.... .+| .+..+|.+.+...+..++. ..++.++|++...+|-+..+- . .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 466677654422 222 2456899988777665544 347899999999888765433 2 578999999988775
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ .+.++++...+++.++.++...+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~ 282 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPL 282 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHH
Confidence 4 5788999999999999999987643
No 56
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=57.16 E-value=78 Score=35.02 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=70.6
Q ss_pred CCCeEEEEEEcC-CCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHH---HHHHHHHhCCEEEeC
Q 004034 214 LGDKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSVV 287 (778)
Q Consensus 214 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vv---a~LA~l~~Gav~vpl 287 (778)
.++.+|++.... .+| ....+|.+.+...+..++. ..++.++|++..++|.+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 456777765422 112 2356899998877766654 4588999999999887654433 478889999987775
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ .+.+.++...+++.++.++.+.+..
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~ 291 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSA 291 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHH
Confidence 4 5688899999999999999987653
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=55.86 E-value=43 Score=37.54 Aligned_cols=103 Identities=11% Similarity=-0.017 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHH---HHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
.|+.+|++.... .| ....+|.+.+.... +..+...+++.++|++...++-+... +..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec
Confidence 567788765421 12 23567877743322 22222223889999999988877643 56788999999999888
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHH
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~ 496 (778)
+.. ..++++..+++..++..+++.+.....+.
T Consensus 130 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TIQ---MKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CTT---CCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 643 36788999999999999998877665554
No 58
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=55.12 E-value=86 Score=34.42 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=67.3
Q ss_pred CCCeEEEEEE-cCCCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHH--HHHHHHhCCEEEeCC
Q 004034 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA--MLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva--~LA~l~~Gav~vpl~ 288 (778)
.|+.+|++.. ...+| ....+|.+.+...+..++.. .++.++|++...+|-.-.+-.. +++.+ .|+..+.+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3566665543 22222 23568999988777666544 4899999999999877654433 45555 88887765
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+.+.++++...+++.++.++.+.+..
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~ 268 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAI 268 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHH
Confidence 56899999999999999999887643
No 59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.18 E-value=1e+02 Score=33.13 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCC--CCCCCCceEEEccchHHHHHHHHHH--HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 385 DAEDPLFLLYTS--GSTGKPKGVLHTTGGYMVHTATTFK--YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 385 ~~~d~a~Il~TS--GSTG~PKgV~~th~~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
.|+.+|++.... +.+| ....+|.+.+......... ...+. ++|++...++-+... +..+++.+..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEe
Confidence 578888776542 2222 3367888874333222111 12354 799998888877543 6678899999999998
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
.+........+++..+++..++..+++.+.....+...
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 86422122567888999999999999988877666554
No 60
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=53.65 E-value=43 Score=37.27 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=68.8
Q ss_pred CeEEEEEEcC-CCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH--HHHHHHHHhCCEEEeCCCC
Q 004034 216 DKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP--IAMLACARIGAVHSVVFAG 290 (778)
Q Consensus 216 d~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v--va~LA~l~~Gav~vpl~p~ 290 (778)
+.+|++.... .+| ..-.+|.+.+...+......+...++.++|++..++|-.-.+- ..+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 6777665422 222 2356899988877666554433368899999998888765443 3457777 999877765 5
Q ss_pred CCHHHHHHHHHhcCCcEEEEcCC
Q 004034 291 FSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 291 ~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
+.++.+...+++.++.+++..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~ 292 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPT 292 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHH
Confidence 78999999999999999998754
No 61
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=52.56 E-value=62 Score=35.83 Aligned_cols=102 Identities=9% Similarity=-0.084 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++....+ .+..+|.+.+..... ...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEEecC
Confidence 4667776543211 245678776432221 1122346889999999988877643 567889999999999886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~ 496 (778)
.. ...+++..+++..++.++++.+.....+.
T Consensus 104 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 104 PR---LSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cc---cCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 43 36788999999999999998877655443
No 62
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=52.39 E-value=28 Score=27.75 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp 719 (778)
..++++.|.++|+|.+|..+. +...+.+-|..++ .+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vt-----G~~D~ll~v~~~d--------~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVY-----GEYDLIVKVETDT--------LKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECB-----SSCSEEEEEEESS--------HHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEc-----ccCCEEEEEEECC--------HHHHHHHHHHHhc
Confidence 479999999999999998873 3334666665542 4566666765554
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=51.13 E-value=71 Score=36.54 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHH---HHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
.++.+|++... ..+| .+..+|.+.+.... +..+....++.++|++...++..... +..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 46778876542 2222 23467777643322 22222256889999999999887654 66788999999999888
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHH
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps 490 (778)
+.. ..++++...|+.-++.++++...
T Consensus 170 ~~~---~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAG---FSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEEccc
Confidence 653 47889999999999998887643
No 64
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=51.05 E-value=65 Score=35.59 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++.. .+| -.+|.+.+..... ...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEeccC
Confidence 4777886642 222 3577776432221 1122346899999999988877543 667889999999998886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L 495 (778)
.. ..++++..+++..++..+++.+.....+
T Consensus 106 ~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 106 PF---STPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TT---CCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CC---CCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 43 3778899999999999998876544433
No 65
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=50.16 E-value=67 Score=36.60 Aligned_cols=97 Identities=10% Similarity=-0.052 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.++.+|++... ..+| ..-.+|.+.+..... ...-...++.++|++...++-.... +..+++++..|+..+..+
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF 163 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 36778876432 2222 235678777433221 1222346899999999999887654 667889999999998886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~P 489 (778)
.. ..++++..+++..++.++++..
T Consensus 164 ~~---~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 164 GG---FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEEES
T ss_pred CC---CCHHHHHHHHHhcCCCEEEEcC
Confidence 53 4788999999999999887753
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=47.20 E-value=89 Score=34.96 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=67.9
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHH--HHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++.... .| ....+|.+.+.... .+..-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~--~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF--WYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCEEEEeCC
Confidence 578888876532 12 24567777643222 12222346899999999988877543 567889999999998876
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~P 489 (778)
.. ..++++..+++.-++.++++.+
T Consensus 143 ~~---~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HM---LKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TT---CCHHHHHHHHHHHTCCEEEEES
T ss_pred cc---CCHHHHHHHHHhcCCCEEEEec
Confidence 43 4778899999999999888754
No 67
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=45.75 E-value=1.2e+02 Score=33.01 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=67.4
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++.. . .+..+|.+.+...... ..-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALLN 85 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEEC
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEecC
Confidence 4667776642 1 1246787774332211 122246889999999988877654 567889999999999887
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEe--cHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYT--APTLVRSL 495 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~--~Ps~l~~L 495 (778)
.. ..++++..++++.+++.+.+ .+.....+
T Consensus 86 ~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 86 PR---LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TT---SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred Cc---cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 53 36788999999999998888 66555444
No 68
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=44.86 E-value=37 Score=26.73 Aligned_cols=47 Identities=26% Similarity=0.065 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp 719 (778)
..++++.|.++|+|.+|..+. ++..+.+-|...+ .+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~d~l~~v~~~d--------~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-----GVYDIVVKVEADS--------MDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-----SSCSEEEEEECSS--------HHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe-----ccCCEEEEEEECC--------HHHHHHHHHHHhc
Confidence 478999999999999998873 3334556555432 3566666665554
No 69
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=44.60 E-value=1.1e+02 Score=34.05 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++. . +-.+|.+.+...... ..-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEEeC
Confidence 467777653 1 235777764332221 112245889999999888877543 567889999999999886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L 495 (778)
.. ..++++..+++..++..+++.+.....+
T Consensus 121 ~~---~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 121 IE---YPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CC---CcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 43 3678899999999999999887654433
No 70
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=44.46 E-value=72 Score=34.95 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCeEEEEEE-cCCCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH-HHHHHHHHHhCCEEEeCCC
Q 004034 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (778)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~-vva~LA~l~~Gav~vpl~p 289 (778)
.++.+|++.. ...+| ....+|.+.+...+..++ ...++.++|++..++|-+..+ +..+++.+..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566665543 22222 235689988877665544 345889999999999876433 3457888999998888765
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEcCC
Q 004034 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 290 ~--~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
. ..++.+...+++.++.++++.+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 3 56788999999999999987754
No 71
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=42.46 E-value=1.1e+02 Score=33.30 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCeEEEEE-EcCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH-HHHHHHHHHhCCEEEeCCC
Q 004034 214 LGDKVAIYW-EANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (778)
Q Consensus 214 ~pd~~Al~~-~~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~-vva~LA~l~~Gav~vpl~p 289 (778)
.++.+|++. ....+|. ...+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 455566553 3322222 356899888776655543 46889999999999876543 3457888999998877654
Q ss_pred C--CCHHHHHHHHHhcCCcEEEEcCC
Q 004034 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 290 ~--~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
. ..++.+...+++.++.+++..+.
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 3 56788999999999999988754
No 72
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=42.24 E-value=91 Score=26.14 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=39.1
Q ss_pred CHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCH--HHHHHHHHHHHhhcCC
Q 004034 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVRKQIGA 720 (778)
Q Consensus 659 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~--~l~~~l~~~l~~~Lp~ 720 (778)
...+|+++|.++|+|.++-=+-.........+-+-|+..+..+..+ ++..+|.+.|++.+|.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3467889999999998876554443222234445556654433222 4677888888888774
No 73
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=41.10 E-value=84 Score=29.08 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=46.1
Q ss_pred CHHHHHHHHhcCCccceEEEE-EEecC-C----CCeEEE--EEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEE
Q 004034 659 GTAEVESALVSHPQCAEAAVV-GVEHE-V----KGQGIY--AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHW 729 (778)
Q Consensus 659 ~~~eIE~~L~~~p~V~ea~Vv-~~~~~-~----~~~~lv--a~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~ 729 (778)
--+|+++.|.++++|..|-|. ..|.. . ..+.+- ++|.++++. .+.+..+.|+..+...+|.. -|..|.+
T Consensus 89 le~ELartI~~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~-l~~~qv~~I~~LVa~SV~gL-~~e~VtV 165 (170)
T 2y9j_Y 89 IEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGS-PLAHQISDIKRFLKNSFADV-DYDNISV 165 (170)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTC-CCGGGHHHHHHHHHHHSTTC-CGGGEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHhcCCC-CccceEE
Confidence 357899999999999999884 34433 1 112344 444456665 44566789999999999864 4555433
No 74
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=40.46 E-value=90 Score=34.30 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++.. | ..+|.+.+..... ...-...++.++|++...++-+... +..+++++..|+..+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecC
Confidence 4677776532 1 3477776432221 1122346889999999988877543 567889999999998886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L 495 (778)
.. ..++++..++++.++..+++.+.....+
T Consensus 105 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 105 TL---LTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TT---CCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred cc---cCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 43 3678899999999999988877654433
No 75
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=39.95 E-value=2.6e+02 Score=31.21 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=68.8
Q ss_pred CCCeEEEEEE-cCCCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHH---HHHHHHHhCCEEEeC
Q 004034 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSVV 287 (778)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vv---a~LA~l~~Gav~vpl 287 (778)
.|+.+|.+.. ...+| .+..+|.+.+...+...... .++.++|++..++|-+..+-. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4567776543 22222 24568999887776665543 478999999999886544332 478889999987775
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCC
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
+ ......+...+++.++.++...+.
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchH
Confidence 5 467888889999999999988764
No 76
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=39.76 E-value=72 Score=29.57 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCccceEEEEEE-ecCCCCeEE--EEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECC
Q 004034 660 TAEVESALVSHPQCAEAAVVGV-EHEVKGQGI--YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~-~~~~~~~~l--va~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~ 731 (778)
-+|+++.|.++++|..|-|... |.. ..+.+ -+++.++++...+... ..|+..+...+|. +-|..|.+++
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~-~~~~~sASV~l~~~~g~~l~~~q-~~I~~LVa~SV~g-L~~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNN-ESQPSSAAVLVISSPEVNLAPSV-IQIKNLVKNSVDD-LKLENISVVI 163 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC--------CEEEEEEEECTTCCCGGGH-HHHHHHHHHHSTT-CCGGGEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCC-CCCCceEEEEEEeCCCCCCcHhH-HHHHHHHHHhcCC-CCcccEEEEe
Confidence 5789999999999999988443 432 22223 3444556676555443 4699999999986 5577777765
No 77
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=38.67 E-value=1.3e+02 Score=33.51 Aligned_cols=105 Identities=13% Similarity=0.009 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++.... -.+-.+|.+.+..... ...-...++.++|++...++-+... +..+++++..|+..+..+
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL--IQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HHHHHHHHHhCcEEEEec
Confidence 477788765431 1245678887433221 1222345889999999988877653 667889999999999886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~ 496 (778)
........+.+..+++..++..+.+.+.....+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 4211003467788899999999999888776653
No 78
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=35.83 E-value=1.1e+02 Score=31.68 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=52.6
Q ss_pred ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH-HHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEE
Q 004034 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (778)
Q Consensus 230 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~-vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~i 308 (778)
...+|++.|...+..++. ..+++++|++..++|-+-.+ +..++..+..|+..+..++.... ...+++.++.++
T Consensus 54 gV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~ 127 (358)
T 4gs5_A 54 PITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFV 127 (358)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEE
T ss_pred EEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEE
Confidence 356999998877665554 45899999999998876433 34456667778876666654332 345667777777
Q ss_pred EEcC
Q 004034 309 ITSN 312 (778)
Q Consensus 309 it~~ 312 (778)
...+
T Consensus 128 ~~~P 131 (358)
T 4gs5_A 128 AMVP 131 (358)
T ss_dssp EECH
T ss_pred EcCh
Confidence 7654
No 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=34.75 E-value=2e+02 Score=31.30 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCeEEEEE-EcCCCC--cceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH--HHHHHHHHHhCCEEEeCC
Q 004034 214 LGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PIAMLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~--vva~LA~l~~Gav~vpl~ 288 (778)
.|+.+|++. ....+| ....+|.+.+...+..++..+ ++.++|++...+|..-.. +..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 456666554 332222 235689999988877766544 788999998888865433 34578999999987776
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+.+..+.+...+ ..++.+++..+..
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~ 253 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTM 253 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHH
Confidence 557788888888 7788888876543
No 80
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=33.52 E-value=45 Score=27.02 Aligned_cols=47 Identities=26% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp 719 (778)
..++++.|.++|+|.+|..+. +...+.+.|..++ .+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~D~ll~v~~~d--------~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT-----GPYDLVALVRLKD--------VEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES-----SSSSEEEEEEESS--------GGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEee-----cCCCEEEEEEECC--------HHHHHHHHHHhcc
Confidence 588999999999999999883 3444666666543 2455555655554
No 81
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=32.20 E-value=4.5e+02 Score=27.31 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCE--EEeCC--CC---CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVF--AG---FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav--~vpl~--p~---~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
.++||.|.+..|.-..+. .++...|+. .+|++ .. ...+.++..+++.++++|+.+.-....+...+...
T Consensus 140 ~~~gd~Vi~~~~~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~- 215 (421)
T 3l8a_A 140 SEKGDAVLINSPVYYPFA---RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDD- 215 (421)
T ss_dssp SCTEEEEEEEESCCHHHH---HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHH-
T ss_pred cCCCCEEEECCCCcHHHH---HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHH-
Confidence 468999888777655533 345567764 44543 11 57899999998777888887665555554443332
Q ss_pred HHHHHHHHhhcCCCccEEEEEccC
Q 004034 327 VDAALDECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 327 ~~~~~~~~~~~~~~~~~vi~~~~~ 350 (778)
+.++.+.+.+. ...+++|+.
T Consensus 216 l~~l~~l~~~~----~~~li~De~ 235 (421)
T 3l8a_A 216 LIKIAELCKKH----GVILVSDEI 235 (421)
T ss_dssp HHHHHHHHHHH----TCEEEEECT
T ss_pred HHHHHHHHHHc----CCEEEEEcc
Confidence 44444444322 234555654
No 82
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=31.65 E-value=3.8e+02 Score=27.73 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=47.3
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCC-----CCCHHHHHHHHHhc---CCc-EEEEcCC-cccCCcccch
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 323 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p-----~~~~~~l~~~l~~~---~~~-~iit~~~-~~~~~~~~~~ 323 (778)
+++||.|.+..|.-..+. .++...|+.+++++. .+..+.++..+++. +.+ +++++.- ....+...+.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 198 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSD 198 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCH
Confidence 578999998887655544 334567875555542 45788898888764 666 5665543 3444555554
Q ss_pred HHHHHHHHHHH
Q 004034 324 KDIVDAALDEC 334 (778)
Q Consensus 324 ~~~~~~~~~~~ 334 (778)
.. +.+..+.+
T Consensus 199 ~~-l~~l~~~~ 208 (413)
T 3t18_A 199 EE-WDEVITFL 208 (413)
T ss_dssp HH-HHHHHHHH
T ss_pred HH-HHHHHHHH
Confidence 44 44444433
No 83
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=31.63 E-value=1.4e+02 Score=32.41 Aligned_cols=81 Identities=7% Similarity=-0.035 Sum_probs=59.3
Q ss_pred EEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCcc
Q 004034 406 LHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (778)
Q Consensus 406 ~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT 483 (778)
.+|.+.+..... ...-...++.++|++...++-+... +..+++.+..|+..+..+.. ...+++..++++.++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~---~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTA---YTLHELDYFITDAEPK 102 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTT---CCHHHHHHHHHHHCCS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCC---CCHHHHHHHHHhcCCc
Confidence 477776432221 1222345899999999988877543 66788999999999988643 3778899999999999
Q ss_pred EEEecHHH
Q 004034 484 IFYTAPTL 491 (778)
Q Consensus 484 ~l~~~Ps~ 491 (778)
.+++.+..
T Consensus 103 ~vi~~~~~ 110 (503)
T 4fuq_A 103 IVVCDPSK 110 (503)
T ss_dssp EEEECGGG
T ss_pred EEEECchh
Confidence 99887643
No 84
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=31.57 E-value=1.8e+02 Score=31.17 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=46.5
Q ss_pred CCCCCEEEEEeCCChHHHHHHH-HHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~L-A~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.. ..+.++..++. ++++|+.+.-....+...+++.+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i 189 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADLEAL 189 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHH
Confidence 6899999666555444443332 566789887777765 67777777654 67888877655555666665543
No 85
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=31.06 E-value=4.3e+02 Score=26.68 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=49.1
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCC--EEEeCCC--CCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 329 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Ga--v~vpl~p--~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~ 329 (778)
+++||.|.+..+.-..+.- ++...|+ +++++++ ....+.++..+++.++++|+.+.-....+...+... +.+
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~-l~~ 181 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAAD-MEA 181 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHH-HHH
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHH-HHH
Confidence 5789999988776655432 3456687 4555555 357889999998878888887654444444444333 444
Q ss_pred HHHHH
Q 004034 330 ALDEC 334 (778)
Q Consensus 330 ~~~~~ 334 (778)
..+.+
T Consensus 182 i~~~~ 186 (367)
T 3euc_A 182 IVRAA 186 (367)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 44444
No 86
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=30.42 E-value=4.5e+02 Score=26.70 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=46.1
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCC--------CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG--------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~--------~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~ 325 (778)
+++||.|.+..|.-..+. .++...|+.++.++.. ...+.++..+++ +++|+...-....+...+...
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~ 185 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDE 185 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHH
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHH
Confidence 578999887666555543 3455778866655443 578889888877 777766554444444443332
Q ss_pred HHHHHHHHH
Q 004034 326 IVDAALDEC 334 (778)
Q Consensus 326 ~~~~~~~~~ 334 (778)
+.+..+.+
T Consensus 186 -l~~i~~~~ 193 (391)
T 4dq6_A 186 -LKKLGDIC 193 (391)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444444
No 87
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=30.39 E-value=2.9e+02 Score=27.94 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC----C--CCCHHHHHHHHHh----cCCcEEEEcCCcccCCcccch
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF----A--GFSSDSLAQRIMD----CKPKVVITSNAVKRGPKAIHL 323 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~----p--~~~~~~l~~~l~~----~~~~~iit~~~~~~~~~~~~~ 323 (778)
+++||.|.+..+.......+ +...|+.++.++ + ....+.++..+++ .++++|+...-....+...++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 47899988877666555443 567787655554 2 2468889988875 367777777665555555665
Q ss_pred HH
Q 004034 324 KD 325 (778)
Q Consensus 324 ~~ 325 (778)
+.
T Consensus 167 ~~ 168 (371)
T 2e7j_A 167 KK 168 (371)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 88
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=30.05 E-value=2.2e+02 Score=29.06 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=44.9
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC--CC--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~--p~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
.++||.|.+..+..+.+.-...++...|+.++.++ ++ ...+.++..++. ++++|+.+.-....+...+++.+
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i 161 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDV 161 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHH
Confidence 36899887766655555444445566788655554 33 457788777754 67777776554445666665443
No 89
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=29.98 E-value=2.2e+02 Score=34.14 Aligned_cols=97 Identities=12% Similarity=-0.024 Sum_probs=68.3
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
..|+.+|++.- .+| ..+|.+.+..... ...-...++.++|++....+-+... +..+++.+..|+..+..
T Consensus 73 ~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~--~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF--VLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH--HHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH--HHHHHHHHHcCCEEEee
Confidence 35788887642 222 3577776432221 1122346899999999988877543 66788999999999998
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHH
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLV 492 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l 492 (778)
+.. ..++++..+++..+++++++.+...
T Consensus 144 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 144 NPF---FTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp CTT---SCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCC---CCHHHHHHHHHHcCCeEEEEChHHH
Confidence 753 3788999999999999998876543
No 90
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=29.80 E-value=3.6e+02 Score=27.66 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=47.6
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhc---CCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~---~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+..|....+. .++...|+.+++++. ...+.++..++.. ++++|++..-....+...+++.+
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l 195 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPEL 195 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHH
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHH
Confidence 578999988877665543 345567887777654 5678899998875 67888877665545555554443
No 91
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=29.66 E-value=1.6e+02 Score=23.69 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=38.1
Q ss_pred CHHHHHHHHhcC--CccceEEEEEEecCCCCeEEEEEEEEcCCCCCC--HHHHHHHHHHHHhhcCC
Q 004034 659 GTAEVESALVSH--PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIGA 720 (778)
Q Consensus 659 ~~~eIE~~L~~~--p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~--~~l~~~l~~~l~~~Lp~ 720 (778)
...+|++.|.++ |+|.++-=+-...-.....+-+-|+..+..... .++.++|.+.|++.+|.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~ 76 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG 76 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 457888999999 999887555443322223344555555443221 34567788888888764
No 92
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=27.90 E-value=4.7e+02 Score=27.05 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC--C---CCCHHHHHHHHHhc---CCc-EEEEcCC-cccCCcccch
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A---GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 323 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~--p---~~~~~~l~~~l~~~---~~~-~iit~~~-~~~~~~~~~~ 323 (778)
+++||.|.+..|.-..+.- ++...|+.+++++ + .+..+.+...+++. +.+ +++.+.- ....+...+.
T Consensus 123 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 199 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIED 199 (418)
T ss_dssp SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCH
Confidence 5789999888776655443 4567888655543 2 45788898888763 565 5555533 3444555554
Q ss_pred HHHHHHHHHHH
Q 004034 324 KDIVDAALDEC 334 (778)
Q Consensus 324 ~~~~~~~~~~~ 334 (778)
+. +.+..+.+
T Consensus 200 ~~-l~~l~~~~ 209 (418)
T 3rq1_A 200 KD-WDSILNFL 209 (418)
T ss_dssp HH-HHHHHHHH
T ss_pred HH-HHHHHHHH
Confidence 44 44444433
No 93
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=27.30 E-value=4.2e+02 Score=26.78 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=51.7
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCC--EEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Ga--v~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~ 331 (778)
+++||.|.+..|.-..+. .++...|+ +++|++++...+.++..++.- .++++...-....+...+... +.+..
T Consensus 102 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~-l~~l~ 176 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFF---HLLSATQREGIFIDATGGINLHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEW-LNELC 176 (377)
T ss_dssp SCTTCCEEEEESCCTHHH---HHHHHHTCCEEEEECTTSCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHH-HHHHH
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEEccCCCCCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHH-HHHHH
Confidence 468999988887766644 33455676 566666667888999888764 555555544444444444333 44444
Q ss_pred HHHhhcCCCccEEEEEccC
Q 004034 332 DECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 332 ~~~~~~~~~~~~vi~~~~~ 350 (778)
+.+.+. ...+++|+.
T Consensus 177 ~~~~~~----~~~li~De~ 191 (377)
T 3fdb_A 177 DLAHRY----DARVLVDEI 191 (377)
T ss_dssp HHHHHT----TCEEEEECT
T ss_pred HHHHHc----CCEEEEEcc
Confidence 434221 234555554
No 94
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=27.22 E-value=2.7e+02 Score=28.78 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=46.8
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCE--EEeCCCC--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav--~vpl~p~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+..+...... ..-++...|+. +++++++ ...+.++..++..++++|+.+.-....+...+++.+
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 689999988876544311 22345566874 4555543 368899999986678888887655555666665543
No 95
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=27.18 E-value=5.8 Score=42.45 Aligned_cols=49 Identities=2% Similarity=-0.307 Sum_probs=37.8
Q ss_pred CCccchhhh-hhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHH
Q 004034 104 AGKISRLNA-VILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (778)
Q Consensus 104 ~akfdl~~~-~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (778)
..+|||.+. +. +.++.+...+ |+++ +++.+++++|.++|++++++|+..
T Consensus 371 ~~~~~l~~~~~~--~~~~~l~~~~-y~~~----~~~~~l~~~~~~~L~~l~~~~~~~ 420 (422)
T 1q9j_A 371 SISVPLDLYSCA--VYAGQLIIEH-HGHI----AEPGKSLEAIRSLLCTVPSEYGWI 420 (422)
T ss_dssp BSSCCCCEEEEE--EETTEEEEEE-ESSC----SSHHHHHHHHHHHHHHTTTSCC--
T ss_pred CCCCCceEEEEE--eeCCeEEEEE-ecCc----cchHHHHHHHHHHHHHhhcCcccc
Confidence 467888766 33 3356678899 9987 788889999999999999998754
No 96
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=26.67 E-value=2e+02 Score=31.88 Aligned_cols=92 Identities=9% Similarity=0.030 Sum_probs=65.0
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.|+.+|++. . +-.+|.+.+..... ...-...++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcC
Confidence 467777653 1 22577776432221 1122246889999999988877654 667889999999999886
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHH
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPT 490 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps 490 (778)
.. ...+++..+++..++..+.+...
T Consensus 157 ~~---~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 157 PQ---FPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TT---SCHHHHHHHHHHHTCSEEEECTT
T ss_pred CC---ChHHHHHHHHHhcCCCEEEecch
Confidence 43 36789999999999998887654
No 97
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=25.67 E-value=1.9e+02 Score=29.63 Aligned_cols=65 Identities=12% Similarity=-0.044 Sum_probs=44.8
Q ss_pred HHHHcCC-CCCCEEEEEeCCChHHHHHHHHHHHhCCEEE-eCCCCCCHHHHHHHHHhcCCcEEEEcCC
Q 004034 248 YLKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHS-VVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 248 ~L~~~Gv-~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~v-pl~p~~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
.+.+.|. ++|+.|.+....+-.-....++|.+.|.-.+ .++...+.. -..+++..+++++++...
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLE-RRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHH-HHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHH-HHHHHHHCCCEEEEECCC
Confidence 3445664 8898875666667777777788888898443 334444544 456778999999998653
No 98
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=24.96 E-value=3e+02 Score=28.52 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=48.3
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+--+..... .-++...|+..++++. ...+.++..+++.++++|+++.-....+...+++.+
T Consensus 140 ~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l 208 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSL---WEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAEL 208 (409)
T ss_dssp CCTTCEEEEETTSCHHH---HHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHH
T ss_pred cCCCCEEEECCCcCHHH---HHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHH
Confidence 57999988765554443 3455667888777654 568899999988778888888665555666665443
No 99
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=24.93 E-value=4e+02 Score=27.00 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=43.2
Q ss_pred CCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCC---C--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 255 ~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p---~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
++||.|.+.-+......+ .-++.+.|+.++.++. + ...+.++..++..++++|+.+.-....+...+++.+
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i 159 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAI 159 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHH
Confidence 789988776443332221 2344567875554433 3 467889988877577888877655455555665543
No 100
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=24.44 E-value=3.5e+02 Score=28.51 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=47.4
Q ss_pred HHHHcCCCCCCEEEEEeCCChHHHHHHHH-HHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 248 ~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA-~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
.|+.. +++||.|.+..+.-.....++-. +.+.|+-++.++.. ..+.++..++. +.++|+.+.-....+...+++.+
T Consensus 112 al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i 188 (414)
T 3ndn_A 112 SLGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAV 188 (414)
T ss_dssp HHHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHH
Confidence 34444 68999987776655554433322 34578877766654 67778777754 67888876655555555565543
No 101
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.42 E-value=1.4e+02 Score=31.15 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEe--CCC---CCCHHHHHHHHHhcC--CcEEEEc
Q 004034 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV--VFA---GFSSDSLAQRIMDCK--PKVVITS 311 (778)
Q Consensus 248 ~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vp--l~p---~~~~~~l~~~l~~~~--~~~iit~ 311 (778)
.|+.+++++||.|.+-.+....+. -++...|+.++. +++ ....+.++..+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 455567899999988776665543 346678986554 443 247888888874444 7777744
No 102
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.24 E-value=1e+02 Score=30.80 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCC
Q 004034 243 CQLANYLKDIGVKKGDAVIIYLPML 267 (778)
Q Consensus 243 ~~lA~~L~~~Gv~~Gd~Vai~~~~s 267 (778)
..|+..|+++||++||.|.|...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999998753
No 103
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=23.93 E-value=1.9e+02 Score=29.69 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=44.9
Q ss_pred HHHcCCCCCCEEEEEeCCChHHHHHHHH-HHHhCCEEEeCCC----C--CCHHHHHHHHHhcCCcEEEEcCCcccCCccc
Q 004034 249 LKDIGVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFA----G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321 (778)
Q Consensus 249 L~~~Gv~~Gd~Vai~~~~s~e~vva~LA-~l~~Gav~vpl~p----~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~ 321 (778)
++...+++||.|.+..+......-++.. +...|+.++.++. + ...+.++..++. ++++|+.+.-....+...
T Consensus 93 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~ 171 (390)
T 1elu_A 93 LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVL 171 (390)
T ss_dssp HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBC
T ss_pred HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceec
Confidence 3344467999998887777666554443 3456875555443 2 345566655543 567777765554455566
Q ss_pred chHH
Q 004034 322 HLKD 325 (778)
Q Consensus 322 ~~~~ 325 (778)
+++.
T Consensus 172 ~~~~ 175 (390)
T 1elu_A 172 PLAE 175 (390)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6443
No 104
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=23.91 E-value=2.2e+02 Score=29.48 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCCCCEEEEEeCCChHHHHHHHH-HHHhCCEEE--eCCCC--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHS--VVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA-~l~~Gav~v--pl~p~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~ 325 (778)
+++||.|.+..+........+.. +...|+.++ +++.+ ...+.++..++. ++++|+...-....+...+++.
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~ 190 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEE 190 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHH
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHH
Confidence 67899998887777665433333 335687544 44433 457788777754 6777777665444555566443
No 105
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.62 E-value=1.9e+02 Score=29.66 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEeCCCh------HHHHHHHHHHH-hCCEEEeCCC---------CC---CHHHHHHHHHhcCCcEEEEcCC
Q 004034 253 GVKKGDAVIIYLPMLM------ELPIAMLACAR-IGAVHSVVFA---------GF---SSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 253 Gv~~Gd~Vai~~~~s~------e~vva~LA~l~-~Gav~vpl~p---------~~---~~~~l~~~l~~~~~~~iit~~~ 313 (778)
-+++||+|+|+.|.+. +.+-.....++ .|.-++.-.. +. -+++|..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 3689999999999863 22222222222 3544332211 11 1234555666667777776654
Q ss_pred c
Q 004034 314 V 314 (778)
Q Consensus 314 ~ 314 (778)
.
T Consensus 88 G 88 (327)
T 4h1h_A 88 G 88 (327)
T ss_dssp C
T ss_pred c
Confidence 4
No 106
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=22.32 E-value=3.2e+02 Score=29.97 Aligned_cols=90 Identities=8% Similarity=-0.051 Sum_probs=61.3
Q ss_pred eEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCC----hhHHHHHH
Q 004034 404 GVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD----SGRSWDIV 477 (778)
Q Consensus 404 gV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~----~~~~~~~i 477 (778)
+-.+|.+.+...... ..-...++.++|++...++-+... +..+++++..|+..+..+......+ .+++..++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF--VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 356777774332221 122246889999999998877643 6678899999999998864211001 57788899
Q ss_pred HHhCccEEEecHHHHHHH
Q 004034 478 DKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 478 ~~~~vT~l~~~Ps~l~~L 495 (778)
+..++..+.+.......+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999998877655444
No 107
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=22.32 E-value=3e+02 Score=28.18 Aligned_cols=71 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCC--EEEeCCCC--CCHHHHHHHHHh-cCCcEEEEcCCcccCCcccchHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFAG--FSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLKD 325 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Ga--v~vpl~p~--~~~~~l~~~l~~-~~~~~iit~~~~~~~~~~~~~~~ 325 (778)
+++||.|.+..+..+-.. ..-.+.+.|+ ++++++++ ...+.++..+++ .++++|+.+.-....+...+++.
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~ 155 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDA 155 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHH
Confidence 578998877766544332 1112234676 45565543 578899988875 47788877765544455555543
No 108
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=22.31 E-value=2e+02 Score=31.22 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=56.2
Q ss_pred EEccchHHHHHH--HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCcc
Q 004034 406 LHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (778)
Q Consensus 406 ~~th~~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT 483 (778)
.+|.+.+..... ...-...++.++|++....+-+... +..+++++..|+..+..+.. ..++++..+++..+++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~vpl~~~---~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM--LATFVALTKSGHAYIPVDVH---SAPERILAIIEIAKPS 103 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH--HHHHHHHHHTTCCEEEEETT---SCHHHHHHHHHHSCCS
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEecCcc---ccHHHHHHHHHhCCCC
Confidence 467776432221 1222346889999888887776543 56788999999999988753 3778899999999999
Q ss_pred EEEecH
Q 004034 484 IFYTAP 489 (778)
Q Consensus 484 ~l~~~P 489 (778)
.+++..
T Consensus 104 ~ii~~~ 109 (521)
T 3l8c_A 104 LIIAIE 109 (521)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 887643
No 109
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=22.04 E-value=2.9e+02 Score=28.09 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=46.1
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEE--eCCC--C--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHS--VVFA--G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~v--pl~p--~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~ 327 (778)
+++||.|.+..|.-..+.- ++...|+.++ ++++ + ...+.++..++. ++++|+...-....+...+.. .+
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~-~l 176 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYD---IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRT-YL 176 (375)
T ss_dssp CCTTCEEEEEESSCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHH-HH
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHH-HH
Confidence 5799999988887766443 3556787554 4442 2 367888887753 677777765444445555522 23
Q ss_pred HHHHHHH
Q 004034 328 DAALDEC 334 (778)
Q Consensus 328 ~~~~~~~ 334 (778)
.+..+.+
T Consensus 177 ~~i~~la 183 (375)
T 3op7_A 177 EELVEIA 183 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 110
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=21.75 E-value=3.2e+02 Score=28.00 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=45.7
Q ss_pred CCCCCEEEEEeCCChHHHHHHHHHHHhCCE--EEeCCCC--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav--~vpl~p~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+..+...... ..-++...|+. +++++++ ...+.++..+++.++++|+.+.-....+...+++.+
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 165 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGV 165 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHH
Confidence 578999888877655532 22245667874 4555443 577889888876577888776544444555554443
No 111
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=20.96 E-value=2.7e+02 Score=29.09 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCCCCEEEEEeCCChHHHHHHH-HHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~L-A~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+++||.|.+..|.-..+.-.+- ++...|+.++.++.. ..+.++..++. ++++|+.+.-....+...+++.+
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i 169 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERV 169 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHH
Confidence 5789998887776665444322 456678877766554 45666666643 56778776655555666665443
No 112
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=20.63 E-value=6.6e+02 Score=25.26 Aligned_cols=71 Identities=4% Similarity=0.079 Sum_probs=44.4
Q ss_pred CCCCCCEEEEEeCCChHHHHHHHHHHHhCC--EEEeCCCCC--CHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHH
Q 004034 253 GVKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFAGF--SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (778)
Q Consensus 253 Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Ga--v~vpl~p~~--~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~ 326 (778)
+.++||.|.+..+....+. -++...|+ +++|+++.+ ..+.++..+++.++++++........+...+++.+
T Consensus 119 ~~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 193 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFE---KGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEEL 193 (397)
T ss_dssp CCCSSCEEEEETTCCTHHH---HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHH
T ss_pred cCCCCeEEEECCcchhHHH---HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHH
Confidence 4457999888777666533 23444576 455555543 78899999988566666655544445555555543
No 113
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=20.48 E-value=2.6e+02 Score=29.24 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCCCCEEEEEeCCChHHHHHHHH-HHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHH
Q 004034 254 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (778)
Q Consensus 254 v~~Gd~Vai~~~~s~e~vva~LA-~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~ 327 (778)
+++||.|.+..+........+.. +.+.|+.++.++.+ .+.++..++. +.++|+...-....+...+++.+.
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~ 163 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVETVANPALLVPDLEALA 163 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHH
Confidence 57899988877766544433332 34568766666654 7777776654 667777765544455555654443
No 114
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.47 E-value=2.9e+02 Score=24.34 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA 720 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~ 720 (778)
..++.+.|.++|+|.+|..+ .+...+.+.|...+ .+++.+.+.+.+..
T Consensus 82 ~~~~~~~l~~~peV~~~~~v-----tG~~d~~~~v~~~d--------~~~l~~~l~~~l~~ 129 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYT-----TGHYSIFIKVMCRS--------IDALQHVLINKIQT 129 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEE-----SSSCSEEEEEEESC--------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCcCeEEEEEE-----ecccCEEEEEEECC--------HHHHHHHHHHHhhc
Confidence 57899999999999999987 23334566665542 45677777665543
No 115
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.38 E-value=1.8e+02 Score=29.53 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCCCEEEEEeCCChHHHHHHHHHHHhCCEEE--eCCCC--CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHH
Q 004034 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHS--VVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (778)
Q Consensus 255 ~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~v--pl~p~--~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~ 325 (778)
++||.|.+..+..+.+.-++..+.+.|+.++ +++++ ...+.++..++. ++++|+.+.-....+...+++.
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~ 159 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHH
Confidence 6899998887777766665555556787554 44443 367788777653 5677777665545555556543
No 116
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.15 E-value=2.9e+02 Score=28.64 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=41.3
Q ss_pred HHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC--CC--CCHHHHHHHHHhc--CCcEEEEcC
Q 004034 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMDC--KPKVVITSN 312 (778)
Q Consensus 249 L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~--p~--~~~~~l~~~l~~~--~~~~iit~~ 312 (778)
++.+++++||.|.+..+....... ++...|+.++.++ .+ ...+.++..+++. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 444467899999888877766543 3445787555544 32 4678898888864 577777765
No 117
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=20.00 E-value=2.5e+02 Score=28.90 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEeCCChH------HHHHHHHHHH-hCCEEEeCCC---------CCC---HHHHHHHHHhcCCcEEEEcCC
Q 004034 253 GVKKGDAVIIYLPMLME------LPIAMLACAR-IGAVHSVVFA---------GFS---SDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 253 Gv~~Gd~Vai~~~~s~e------~vva~LA~l~-~Gav~vpl~p---------~~~---~~~l~~~l~~~~~~~iit~~~ 313 (778)
-+++||+|+|+.|.+.- .+-.-...++ .|.-++.-.. +.+ +++|..++.+-.+++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 37899999999998852 2222233333 3544333111 111 233445556666677776654
Q ss_pred c
Q 004034 314 V 314 (778)
Q Consensus 314 ~ 314 (778)
.
T Consensus 89 G 89 (336)
T 3sr3_A 89 G 89 (336)
T ss_dssp C
T ss_pred c
Confidence 4
Done!