Query 004035
Match_columns 777
No_of_seqs 538 out of 2433
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 16:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 9E-156 2E-160 1352.8 66.8 706 54-774 1-765 (765)
2 KOG0229 Phosphatidylinositol-4 100.0 6E-108 1E-112 881.6 31.3 390 364-774 25-420 (420)
3 cd00139 PIPKc Phosphatidylinos 100.0 1.2E-88 2.7E-93 730.2 32.2 306 380-774 1-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 5.6E-80 1.2E-84 671.2 32.0 337 407-773 1-342 (342)
5 PF01504 PIP5K: Phosphatidylin 100.0 6.5E-66 1.4E-70 542.2 16.4 248 463-773 1-252 (252)
6 COG5253 MSS4 Phosphatidylinosi 100.0 3.8E-58 8.2E-63 496.6 14.5 309 366-773 281-596 (612)
7 KOG0230 Phosphatidylinositol-4 100.0 1.2E-47 2.7E-52 455.3 16.8 249 435-774 1324-1587(1598)
8 PLN03185 phosphatidylinositol 100.0 2.8E-36 6.1E-41 352.6 24.3 196 38-240 13-211 (765)
9 COG4642 Uncharacterized protei 99.8 7.8E-18 1.7E-22 156.9 13.1 131 107-237 8-138 (139)
10 COG4642 Uncharacterized protei 99.7 9.1E-18 2E-22 156.5 10.7 131 84-214 8-138 (139)
11 KOG0231 Junctional membrane co 99.7 8E-18 1.7E-22 190.8 9.1 183 61-245 121-318 (455)
12 KOG0231 Junctional membrane co 99.7 8.5E-18 1.8E-22 190.6 8.4 184 50-233 131-330 (455)
13 COG2849 Uncharacterized protei 98.1 6.7E-05 1.5E-09 78.7 15.9 87 137-223 128-217 (230)
14 COG2849 Uncharacterized protei 98.1 0.00022 4.8E-09 74.9 19.2 160 50-210 60-228 (230)
15 smart00698 MORN Possible plasm 97.0 0.0011 2.4E-08 45.7 4.1 21 63-83 2-22 (26)
16 smart00698 MORN Possible plasm 96.9 0.001 2.3E-08 45.8 3.6 21 201-221 2-22 (26)
17 PF02493 MORN: MORN repeat; I 96.9 0.00078 1.7E-08 44.7 2.8 22 64-85 1-22 (23)
18 PF02493 MORN: MORN repeat; I 96.9 0.00079 1.7E-08 44.7 2.4 22 202-223 1-22 (23)
19 PF07202 Tcp10_C: T-complex pr 65.0 82 0.0018 32.1 11.4 11 190-200 119-129 (179)
20 PLN02667 inositol polyphosphat 58.2 16 0.00035 39.8 5.3 67 486-565 22-99 (286)
21 PF07202 Tcp10_C: T-complex pr 55.5 1.9E+02 0.0041 29.5 12.1 71 95-180 62-132 (179)
22 PF12226 Astro_capsid_p: Turke 54.5 4.4 9.6E-05 40.3 0.2 39 449-495 115-153 (230)
23 PF14977 FAM194: FAM194 protei 31.9 2.6E+02 0.0057 29.2 9.0 53 98-154 24-78 (208)
24 PF14977 FAM194: FAM194 protei 26.2 2.7E+02 0.0059 29.1 7.9 68 148-223 9-78 (208)
25 PRK10345 hypothetical protein; 24.4 2.2E+02 0.0048 29.4 7.0 69 476-549 11-85 (210)
26 PLN00034 mitogen-activated pro 23.5 4.5E+02 0.0098 28.6 9.7 68 477-551 84-154 (353)
27 PF01873 eIF-5_eIF-2B: Domain 22.7 1E+02 0.0022 29.6 3.7 75 447-534 37-116 (125)
28 PF07661 MORN_2: MORN repeat v 21.3 1.5E+02 0.0032 18.7 3.2 19 212-230 2-21 (22)
29 cd00180 PKc Catalytic domain o 21.1 3.2E+02 0.0069 25.9 7.1 68 477-551 3-73 (215)
30 cd05611 STKc_Rim15_like Cataly 20.6 8.5E+02 0.018 24.7 10.6 68 477-551 6-79 (260)
31 KOG4620 Uncharacterized conser 20.4 74 0.0016 27.5 2.0 37 735-775 7-43 (80)
32 PF10411 DsbC_N: Disulfide bon 20.4 78 0.0017 25.8 2.1 22 471-494 25-46 (57)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=8.6e-156 Score=1352.81 Aligned_cols=706 Identities=50% Similarity=0.896 Sum_probs=577.5
Q ss_pred eEEEecCCCEEEEEEECCeeeeEEEEEEcCCcEEEEEEECCeEeeEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCCEE
Q 004035 54 AERVLANGDFYTGQWADNLPHGQGKYLWTDGCMYVGEWYRGKTMGKGKFSWPSGATYEGDFKGGYMDGIGTYTGSVGNTY 133 (777)
Q Consensus 54 g~~~~~nG~~Y~G~~~~~~~hG~G~~~~~dG~~YeG~w~ngk~~G~G~~~~~~G~~YeG~f~~G~~~G~G~~~~~~G~~Y 133 (777)
|+.+++||++|+|+|.++++||.|++.|+||++|+|+|++|++||.|+++|++|.+|+|+|.+|++||.|++++++|.+|
T Consensus 1 Ge~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~Y 80 (765)
T PLN03185 1 GELVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTY 80 (765)
T ss_pred CeEEecCCCEEEEEEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeEeecCcceeeecCCCcccceeecCeeecceEEEecCCcEEEEEEeCCeEeeeEEEEEecCCEEEEEEcCCeeee
Q 004035 134 KGSWIMNLKHGKGTKSFSNGDYYEGEWRRGLQDGHGRYQWKNGNHYIGQWKNGMINGNGTMIWSCGNRYDGFWEDGLPKG 213 (777)
Q Consensus 134 ~G~f~~g~~~G~G~~~y~nG~~YeG~f~~G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~nG~~Y~G~w~nG~~~G 213 (777)
+|+|++|++||.|++.|+||++|+|+|++|+++|.|+|.|+||++|+|+|++|++||.|+++|+||++|+|+|.||++||
T Consensus 81 eG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG 160 (765)
T PLN03185 81 KGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHG 160 (765)
T ss_pred EEEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCEEEEEEeCCCcccceEEEcCCCCCCCcccCCCceeeecCCCcccccccccccCCcccccCCCCCcccc--
Q 004035 214 NGTFRWADGSFYVGVWSKDPKEQNGTYYPSGSPAGDLDWDPQHVYLVDLTDSKICQGEKISILPSQKMTNWPGIAGEV-- 291 (777)
Q Consensus 214 ~G~~~~~dG~~y~G~w~~g~~~G~G~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (777)
.|+++|+||.+|+|.|.+|+++|.|+||++|+..+.. .. .+...+....+++... ....+..+.+......+.
T Consensus 161 ~G~y~~~DG~~Y~G~W~~G~~~G~G~~y~~G~~~p~~---~~-~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (765)
T PLN03185 161 FGVYTWSDGGCYVGTWTRGLKDGKGVFYPAGSRVPAV---QE-FYLNALRKRGVLPDLR-RQNQVLSSHNSEQLSRGVSS 235 (765)
T ss_pred eEEEEECCCCEEEEEeeCCceEeEEEEEECCCccccc---ch-hhhhcccccccccchh-hccccccccccccccccccc
Confidence 9999999999999999999999999999987643221 11 1111223333332210 000000111100000000
Q ss_pred ----ccccccc--cccCCCCCCccccccCccc---c-c------ccCCCC-cccccccCCCccccccccccccccccc--
Q 004035 292 ----NQKQLVY--RRWNDGGRPKRMSVDERLS---N-Y------SLDTDG-SLNVYTNGDVDLRNSEEGMENLQLDDL-- 352 (777)
Q Consensus 292 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 352 (777)
+..+... ...+..+..++|+.+.... + + ..++.- +.....+..+++||+++|++|.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (765)
T PLN03185 236 DKLSKGSLLPLEQSRNRNVSLERRWSLEVSIEKVIGHDYSGSSSAVLDEGSEVEYKANRPILEREYMQGVLISELVLNNS 315 (765)
T ss_pred ccccccccccccccccccccccccccccCcccceecccccccccccccchhhccccccccccchhhhcceeeeeeecccc
Confidence 0000000 1112233345665432221 0 0 011100 110111124778999999988776531
Q ss_pred -CCCCCccccc---CCCCCCccCceeccCCchhHHHHHHHHhhhhhhcCCCCCccccCCccCCCccceeeecCCCCCCCC
Q 004035 353 -DSGGGRVVLK---LPPTPKKQGETIARGHKNYELMLNLQLGIRHSVGRPAPATSLDLKASAFDPKEKVWTKFPPEGSKH 428 (777)
Q Consensus 353 -~~~~~~~~~~---~~~~~~~~g~~i~~gh~~~~l~~~~~~Gir~sv~~~~~~~~~~l~~~df~~~~~~~~~f~~~gs~~ 428 (777)
.+.+++++.. ..++++++|++|++||+||+||+|||+|||+||+++++.+.++|+++||++++++++.||++||+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~gh~~~~l~~~~~~GIr~sv~~~~~~~~~~l~~~DF~~~~~~~~~fp~~gs~~ 395 (765)
T PLN03185 316 FSSTSRRAKRRQKKLVKEIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRPSDFGPRASFWMNFPKAGSQL 395 (765)
T ss_pred cchhccccccccccchhhhcCCCcEEecCcCcHHHHHHHHHhHHHHhccccccCCccCChhhCcceEEEEEEcCcccCcc
Confidence 1222333322 126779999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCCcccceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHH
Q 004035 429 TPPHQSCEFKWKDYCPVVFRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRM 508 (777)
Q Consensus 429 tp~h~~~~f~~kdY~P~vF~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~ 508 (777)
||+|+..+|+||||||+|||+||++|||+++||+.|||++.+|+|++|+|||||+||+|+|+|||||||+++|+++|++|
T Consensus 396 tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~i 475 (765)
T PLN03185 396 TPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRM 475 (765)
T ss_pred CCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccceeeEEEEEEEEEeCCCccEEEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCcccc
Q 004035 509 LPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLKD 588 (777)
Q Consensus 509 Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKD 588 (777)
||+||+||..||+|||+||||||+|++.++ ++++||||+|||++...||++||||||+++|.+++ ...++.+||||
T Consensus 476 Lp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g--~k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k--~~~~~~~tlKD 551 (765)
T PLN03185 476 LPDYHHHVKTYENTLITKFFGLHRIKPSSG--QKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADK--VEIDENTTLKD 551 (765)
T ss_pred HHHHHHHHhhCCCcchhhheEEEEEEeCCC--cEEEEEEEecCCCCCCccceEEECCCCCCCCCCcc--ccccCCCeeee
Confidence 999999999999999999999999998665 89999999999999999999999999999999976 34568899999
Q ss_pred ccchhhhccCHHHHHHHHHHHhhhhHHHhhccccccceEeeeeecccccccCCCCCC--------C--C--CC-------
Q 004035 589 LDLNFIFRLQKVWFQEFCRQVDRDCDFLEQERIMDYSLLIGVHFREAVSYRDSHTPP--------R--T--SG------- 649 (777)
Q Consensus 589 lD~~~~~~l~~~~~~~l~~ql~~D~~FL~~~~ImDYSLLvGih~~~~~~~~~~~~~~--------~--~--~~------- 649 (777)
+||+..+.|++.+++.|++||++||+||++++|||||||||||+++++. .+...+. . . .+
T Consensus 552 lD~~~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (765)
T PLN03185 552 LDLNYSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQH-LRSLLPYSRSITADGLEVVAEEDTIEDEEL 630 (765)
T ss_pred cCcCceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhh-hccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999987432 1111010 0 0 00
Q ss_pred ------CCCCC----CCCCCCCCCCCCCC-----ccccccccccCcccccccccCCCCccccccccccCcccccccCCCC
Q 004035 650 ------ARTPR----GNAELDNEPAAPRL-----SRVDMDQLLLDPTRWASIKLGVNMPARVEQTVRRNDCETQLIGEPT 714 (777)
Q Consensus 650 ------~~~~~----~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~lg~~~p~~~~~~~~~~~~~~~~~g~~~ 714 (777)
..+|. +++.++++.+++.+ ...++|++++. ...+.++||+||||||+++.+..+.+... .
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~mpara~~~~~~~~~~~~~----~ 705 (765)
T PLN03185 631 SYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPG-TARLQIQLGVNMPARAERIPGREDKEKQS----F 705 (765)
T ss_pred ccccccccccccccccccCCCcccccccccccccCchhhhhcccc-ccccchhhcccCchhhhcccccccccccc----c
Confidence 00111 11223344444333 33577888875 33467999999999999999877665443 3
Q ss_pred CCcceeEEEEEEEEeEeeccchhhHHHHhhhhccCCCCceecChhhHHHHHHHHHHhhcc
Q 004035 715 GELYDVILYFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDPRQYSRRFRDFIYRAFV 774 (777)
Q Consensus 715 ~~~~~~v~y~GIIDiLq~Y~~~KklEh~~Ksl~~d~~~IS~V~P~~Ya~RF~~fi~~iF~ 774 (777)
+|.+++|||||||||||+|+++|||||+||+++||+.+||||+|+.|++||++||.++|+
T Consensus 706 ~e~~d~~~~~giidilq~y~~~k~~eh~~k~~~~~~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 706 HEVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDSLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred CcccceEEEEEEEEeecccchhHHHHHHHhhhccCCCceeccChHHHHHHHHHHHHhhcC
Confidence 689999999999999999999999999999999999999999999999999999999995
No 2
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-108 Score=881.60 Aligned_cols=390 Identities=53% Similarity=0.863 Sum_probs=338.2
Q ss_pred CCCCCccCceeccCCchhHHHHHHHHhhhhhhcCCCCCccccCCccCCCccceeeecCCCCCCCCCCCCcccceEEEEeC
Q 004035 364 PPTPKKQGETIARGHKNYELMLNLQLGIRHSVGRPAPATSLDLKASAFDPKEKVWTKFPPEGSKHTPPHQSCEFKWKDYC 443 (777)
Q Consensus 364 ~~~~~~~g~~i~~gh~~~~l~~~~~~Gir~sv~~~~~~~~~~l~~~df~~~~~~~~~f~~~gs~~tp~h~~~~f~~kdY~ 443 (777)
++..+.+|++|++||.||+||+||||||||+|+++++.+.++|++.||.+.+++|+.||.+|++.||||.+.+|+|||||
T Consensus 25 ~~~~~~~g~~v~~~~~~~~l~~~lqlGI~~tVg~ls~v~~r~~~~~df~~~~k~~~~fp~~gs~~tp~h~~~~Fk~KdYc 104 (420)
T KOG0229|consen 25 KKHFVKQGEKVKKGHASYPLMLNLQLGIRHTVGSLSSVPERDLPVMDFPDVEKAYSKFPSEGSKFTPPHHSSDFKFKDYC 104 (420)
T ss_pred ccceeccCceEecccccHHHHHHHHhcchhhhcccccCCcccCchhhCchhhhhheecCCCCCccCCCCCccccchhhcC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHHHhhcccc-c
Q 004035 444 PVVFRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFEN-T 522 (777)
Q Consensus 444 P~vF~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~-T 522 (777)
|+|||+||++||||++|||.|||++.++++++|||||||+||+|+|+|||||||+++|+++|++|||.||+|+..+++ |
T Consensus 105 P~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~~v~~~~~~T 184 (420)
T KOG0229|consen 105 PMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQHVVEQNNRT 184 (420)
T ss_pred hHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHccCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876655 9
Q ss_pred ceeeEEEEEEEEEeCCCccEEEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCccccccch---hhhccCH
Q 004035 523 LVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLKDLDLN---FIFRLQK 599 (777)
Q Consensus 523 LL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~~---~~~~l~~ 599 (777)
|||||||||||++.++ +++|||||+|||++...||++|||||||++|.+++ +..+++.+||||+||. +.+.+++
T Consensus 185 Ll~kf~Gly~vk~~gg--~k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~ask-ke~~k~~pTlKDlDf~~~~~~~~l~~ 261 (420)
T KOG0229|consen 185 LLPKFFGLYRVKPDGG--KKIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASK-KEKIKELPTLKDLDFLNEGQKLYLGK 261 (420)
T ss_pred eehhhceeEEEeeCCC--ceEEEEEecccCCCccceeEEeecCCCcccccccc-hhhccCCCccccchhhccCceEecCH
Confidence 9999999999999887 99999999999999999999999999999999988 4567899999999998 8899999
Q ss_pred HHHHHHHHHHhhhhHHHhhccccccceEeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 004035 600 VWFQEFCRQVDRDCDFLEQERIMDYSLLIGVHFREAVSYRDSHTPPRTSGARTPRGNAELDNEPAAPRLSRVDMDQLLLD 679 (777)
Q Consensus 600 ~~~~~l~~ql~~D~~FL~~~~ImDYSLLvGih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 679 (777)
.++++|++||++||+||++++|||||||||||++++ ...+..+...... .+.+..+.+..+...++.
T Consensus 262 ~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~- 328 (420)
T KOG0229|consen 262 EAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDR-GQAEKEELEPQED-----------ESEREQRLSSASPEDVLT- 328 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccc-cccchhhcCCCCC-----------ccccccccccccccccCC-
Confidence 999999999999999999999999999999999984 2222222111000 011111111110001111
Q ss_pred cccccccccCCCCcccc--ccccccCcccccccCCCCCCcceeEEEEEEEEeEeeccchhhHHHHhhhhccCCCCceecC
Q 004035 680 PTRWASIKLGVNMPARV--EQTVRRNDCETQLIGEPTGELYDVILYFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVD 757 (777)
Q Consensus 680 ~~~~~~~~lg~~~p~~~--~~~~~~~~~~~~~~g~~~~~~~~~v~y~GIIDiLq~Y~~~KklEh~~Ksl~~d~~~IS~V~ 757 (777)
++..+.+++|.++|+++ ++..+..+.+... ..++++|||||||||||+|+++||+||+||+++||+.+||||+
T Consensus 329 ~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl~~d~~tIS~v~ 403 (420)
T KOG0229|consen 329 STASPSIQLGANMPARAGEERVDRMEYAPAQN-----SGGYDVVLYIGIIDILQDYDIKKKLEHAYKSLQHDPDTISAVD 403 (420)
T ss_pred CCCcccccCCCCCCCccccccccccccccccc-----cCcceEEEEEEeehhhhhcchhhHHHHHHhhhccCCceeeccC
Confidence 24467899999999998 4333322221111 1378999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcc
Q 004035 758 PRQYSRRFRDFIYRAFV 774 (777)
Q Consensus 758 P~~Ya~RF~~fi~~iF~ 774 (777)
|++||+||++||.++|.
T Consensus 404 P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 404 PKFYAKRFLDFISNIFF 420 (420)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999884
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=1.2e-88 Score=730.22 Aligned_cols=306 Identities=49% Similarity=0.821 Sum_probs=286.9
Q ss_pred hhHHHHHHHHhhhhhhcCCCCCcc-ccCCccCCCccceeeecCCCCCCCCCCCCcccceEEEEeCHHHHHHHHHHcCCCh
Q 004035 380 NYELMLNLQLGIRHSVGRPAPATS-LDLKASAFDPKEKVWTKFPPEGSKHTPPHQSCEFKWKDYCPVVFRTLRKLFNVDA 458 (777)
Q Consensus 380 ~~~l~~~~~~Gir~sv~~~~~~~~-~~l~~~df~~~~~~~~~f~~~gs~~tp~h~~~~f~~kdY~P~vF~~LR~~~~i~~ 458 (777)
+|+||+|||+|||++|+++++.+. ++|+++||.+++++. ||+.|+..||+|...+|+|++|||.||++||++|||++
T Consensus 1 ~~~l~~~~~~Gi~~~v~~~~~~~~~~~l~~~Df~~~~~~~--~~~~~~~~~~~~~~~~f~fk~Y~P~vF~~lR~~~gi~~ 78 (313)
T cd00139 1 SYPLMSNLQLGIRHSVGELSSVPSPRDLLPDDFKAKSKIK--FPNHGSHLTPPHLSADFKFKDYCPEVFRALRELFGIDE 78 (313)
T ss_pred ChHHHHHHHHHHHHHhhhcccCCccccCchhhhhheEEEE--cCCCCCcccCCCCCccEEEEEeCHHHHHHHHHHcCCCH
Confidence 689999999999999999988766 899999999999887 99999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHHHhhccc-ccceeeEEEEEEEEEeC
Q 004035 459 ADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFE-NTLVTKFFGLHCVKLTG 537 (777)
Q Consensus 459 ~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~-~TLL~k~~Gl~~i~~~~ 537 (777)
+||+.|||.+ .+.|+.|+|||||+||+|+|+|||||||+++|+++|+++||+||+||.+|| +|||+||||||+|++..
T Consensus 79 ~dy~~Sl~~~-~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~~~~~n~~~TLL~k~~Gl~~i~~~~ 157 (313)
T cd00139 79 ADYLRSLCRS-PLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYEYITQNPQNTLLPKFFGLYRVKVKS 157 (313)
T ss_pred HHHHHHhcCC-CCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHHhCCCCcchhhheEEEEEEEcC
Confidence 9999999965 488999999999999999999999999999999999999999999999999 99999999999999873
Q ss_pred CCccEEEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCccccccchh----hhccCHHHHHHHHHHHhhhh
Q 004035 538 TAQKKVRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLKDLDLNF----IFRLQKVWFQEFCRQVDRDC 613 (777)
Q Consensus 538 ~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~~~----~~~l~~~~~~~l~~ql~~D~ 613 (777)
+..+++|||||+|||++...||++||||||+++|.+.+.+ ..++.+||||+||.. .+.++++.++.|++||++||
T Consensus 158 ~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~-~~~~~~vlKD~df~~~~~~~i~l~~~~k~~l~~qL~~D~ 236 (313)
T cd00139 158 GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKE-KQKENPVLKDLNLLEMIEQPLFVGEHSKKALLTQIKRDC 236 (313)
T ss_pred CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCccc-ccCCccccchhhhHhhcCceEEeCHHHHHHHHHHHHHHH
Confidence 3348999999999999989999999999999999998753 346889999999966 78999999999999999999
Q ss_pred HHHhhccccccceEeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCcccccccccCCCCc
Q 004035 614 DFLEQERIMDYSLLIGVHFREAVSYRDSHTPPRTSGARTPRGNAELDNEPAAPRLSRVDMDQLLLDPTRWASIKLGVNMP 693 (777)
Q Consensus 614 ~FL~~~~ImDYSLLvGih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lg~~~p 693 (777)
+||+++||||||||||||..+
T Consensus 237 ~FL~~~~iMDYSLLvGi~~~~----------------------------------------------------------- 257 (313)
T cd00139 237 EFLESLNIMDYSLLVGIHDIR----------------------------------------------------------- 257 (313)
T ss_pred HHHHHCCCcccceEEEEecCC-----------------------------------------------------------
Confidence 999999999999999998331
Q ss_pred cccccccccCcccccccCCCCCCcceeEEEEEEEEeEeeccchhhHHHHhhhhccCC-CCceecChhhHHHHHHHHHHhh
Q 004035 694 ARVEQTVRRNDCETQLIGEPTGELYDVILYFGIIDILQDYDISKKLEHAYKSMQYDP-TSISAVDPRQYSRRFRDFIYRA 772 (777)
Q Consensus 694 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~y~GIIDiLq~Y~~~KklEh~~Ksl~~d~-~~IS~V~P~~Ya~RF~~fi~~i 772 (777)
.|||||||||||+||++||+||++|++.+++ .+||||||++|++||++||.++
T Consensus 258 --------------------------~i~~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~iS~v~P~~Y~~RF~~fi~~~ 311 (313)
T cd00139 258 --------------------------LVLYLGIIDILRTYTWDKKLEHWVKSLGHDGGKTPSVVSPEQYAKRFREFMDKY 311 (313)
T ss_pred --------------------------ceEEEEEEeeeeeCCHHHHHHHHHHHhccCCCCCcceECHHHHHHHHHHHHHHh
Confidence 3699999999999999999999999999988 8999999999999999999999
Q ss_pred cc
Q 004035 773 FV 774 (777)
Q Consensus 773 F~ 774 (777)
|.
T Consensus 312 f~ 313 (313)
T cd00139 312 FL 313 (313)
T ss_pred cC
Confidence 84
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=5.6e-80 Score=671.16 Aligned_cols=337 Identities=45% Similarity=0.731 Sum_probs=269.9
Q ss_pred CccCCCccceeeecCCCCCCCCCCCCcccceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEE
Q 004035 407 KASAFDPKEKVWTKFPPEGSKHTPPHQSCEFKWKDYCPVVFRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYL 486 (777)
Q Consensus 407 ~~~df~~~~~~~~~f~~~gs~~tp~h~~~~f~~kdY~P~vF~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~ 486 (777)
+++||++.+++++.++.. +.+||+|++..|+|++|||.+|+.||++|||++++|+.|||.+. ++|+.|+|||||+||+
T Consensus 1 ~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~-~~~~~s~GKSGs~F~~ 78 (342)
T smart00330 1 LPSDFKATEKIKFPTPGH-LELTPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSP-PLELSSGGKSGSFFYL 78 (342)
T ss_pred CccccccceeEeecCCCc-ccccCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCC-ccccCCCCCCCCEEEE
Confidence 468999999999888877 79999999999999999999999999999999999999999644 4688999999999999
Q ss_pred ecCCceEEEecCHHHHHHHHHHHHHHHHHhhcccccceeeEEEEEEEEEeCCCccEEEEEEEeccccccceeEEEEecCC
Q 004035 487 TNDDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCSEYVIHRRFDLKG 566 (777)
Q Consensus 487 T~D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~~~~i~~~yDLKG 566 (777)
|.|+|||||||+++|+++|+++||+||+||..||+|||+||||||+|++.++...++|||||+|||++...||++|||||
T Consensus 79 T~D~rfiiKti~~~E~~~l~~~lp~Y~~~~~~n~~SlL~ki~Gly~i~~~~~~~~~~~fiVM~NlF~~~~~i~~~yDLKG 158 (342)
T smart00330 79 SLDDRFIIKTVSKSEIKSLLPMLPNYYEHIVQNPNTLLPKFFGLYRVKVKGGTEKKIYFLVMENLFYSDLKVHRKYDLKG 158 (342)
T ss_pred ecCCcEEEEecCHHHHHHHHHHHHHHHHHHHhCCCcchhhhcEEEEEEECCCcceeEEEEEEecCCCCCCceeEEEECCC
Confidence 99999999999999999999999999999999999999999999999987644569999999999998899999999999
Q ss_pred CccCCCCCCCCCCCCCCCccccccch----hhhccCHHHHHHHHHHHhhhhHHHhhccccccceEeeeeecccccccCCC
Q 004035 567 SSHGRTTAKPQTAVDPTTTLKDLDLN----FIFRLQKVWFQEFCRQVDRDCDFLEQERIMDYSLLIGVHFREAVSYRDSH 642 (777)
Q Consensus 567 S~~~R~~~~~~~~~~~~~~lKDlD~~----~~~~l~~~~~~~l~~ql~~D~~FL~~~~ImDYSLLvGih~~~~~~~~~~~ 642 (777)
|+++|.+.+ ...+..+||||+||. ..+.+++..++.|++||++||+||+++||||||||||||..+.. ..+..
T Consensus 159 S~~~R~~~~--~~~~~~~vlkD~df~~~~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~-~~~~~ 235 (342)
T smart00330 159 STRGREADK--KKVKELPVLKDLDLVEMWNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERG-QREEI 235 (342)
T ss_pred CCCCCCcCc--cccCCCCcccccchhhccCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhcccccccc-chhcc
Confidence 999999976 334678999999997 56899999999999999999999999999999999999988632 11111
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCccccccccccCcccccccccCCCCccccccccccCcccccccCCCCCCcceeE
Q 004035 643 TPPR-TSGARTPRGNAELDNEPAAPRLSRVDMDQLLLDPTRWASIKLGVNMPARVEQTVRRNDCETQLIGEPTGELYDVI 721 (777)
Q Consensus 643 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lg~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~v 721 (777)
.... ......+..... ..........+ .+..........++. +|+++. ...++|
T Consensus 236 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~------------------~~~~~v 290 (342)
T smart00330 236 ELPPVYGSDESPSSESS-----NGGKAPDITGN-LLVSNSPDGDGPFGG-IPARAI------------------RARRVV 290 (342)
T ss_pred ccccccccccccccccc-----ccCCCcccccc-ccccccccccccccc-cccccc------------------cCCceE
Confidence 1100 000000000000 00000000000 000000001111222 333221 122579
Q ss_pred EEEEEEEeEeeccchhhHHHHhhhhccCCCCceecChhhHHHHHHHHHHhhc
Q 004035 722 LYFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDPRQYSRRFRDFIYRAF 773 (777)
Q Consensus 722 ~y~GIIDiLq~Y~~~KklEh~~Ksl~~d~~~IS~V~P~~Ya~RF~~fi~~iF 773 (777)
||||||||||+||++||+||++|++++++.+||||||++|++||++||.++|
T Consensus 291 y~iGIID~Lq~Y~~~KklE~~~K~~~~~~~~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 291 LYLGIIDILQTYTWDKKLEHWVKSIGHDGKTISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred EEEEEEEEEEeCCHhHHHHHHHHHhccCCCCcceECHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998
No 5
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=6.5e-66 Score=542.20 Aligned_cols=248 Identities=42% Similarity=0.714 Sum_probs=160.4
Q ss_pred HHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHHHhhcccccceeeEEEEEEEEEeCCCccE
Q 004035 463 ISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKK 542 (777)
Q Consensus 463 ~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~ 542 (777)
+|||+.+++++..|+|||||+||+|.|+|||||||+++|+++|+++||+||+||.+||+|||+||||||+|+..++ .++
T Consensus 1 ~sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~~~SlL~r~~Gl~~i~~~~~-~~~ 79 (252)
T PF01504_consen 1 MSLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSENPNSLLPRFYGLYSIKKSNG-KEK 79 (252)
T ss_dssp ----------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHTTTSSS--EEEEEEE-EETT--EE
T ss_pred CCccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhCcCchHHHHHHHheecccCC-cee
Confidence 4899888999999999999999999999999999999999999999999999999999999999999999965543 589
Q ss_pred EEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCccccccch---hhhccCHHHHHHHHHHHhhhhHHHhhc
Q 004035 543 VRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLKDLDLN---FIFRLQKVWFQEFCRQVDRDCDFLEQE 619 (777)
Q Consensus 543 ~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~~---~~~~l~~~~~~~l~~ql~~D~~FL~~~ 619 (777)
+|||||+|||++...||++||||||+++|.+.+ +...+...++||+||. ..+.|++..++.|++||++||+||+++
T Consensus 80 ~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~-~~~~~~~~~lkD~df~~~~~~i~l~~~~~~~l~~ql~~D~~FL~~~ 158 (252)
T PF01504_consen 80 IYFVVMENLFYTPRNIHERYDLKGSTVGRKAKK-KDREQTEPVLKDLDFIESKRKIHLGPEQKEELLKQLERDTEFLSSH 158 (252)
T ss_dssp EEEEEEE-SS-SSS--SEEEEE--SSSSS-S-C-HHHCSSS-EEEHHHHHHTT--SBS-SCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCccCCcccceEEecCCcccCCCCCc-cccccccceeecccccccCcEEEeChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999899999999999999999975 2233458899999997 789999999999999999999999999
Q ss_pred cccccceEeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCcccccccccCCCCccccccc
Q 004035 620 RIMDYSLLIGVHFREAVSYRDSHTPPRTSGARTPRGNAELDNEPAAPRLSRVDMDQLLLDPTRWASIKLGVNMPARVEQT 699 (777)
Q Consensus 620 ~ImDYSLLvGih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lg~~~p~~~~~~ 699 (777)
||||||||||||........... . ..
T Consensus 159 ~imDYSLLvGi~~~~~~~~~~~~--------------------------------~-~~--------------------- 184 (252)
T PF01504_consen 159 NIMDYSLLVGIHNRDSNEEQENK--------------------------------S-SF--------------------- 184 (252)
T ss_dssp TEES-EEEEEEEH---HHHHHH---------------------------------H------------------------
T ss_pred cccccceeEeeeecccccccccc--------------------------------c-cc---------------------
Confidence 99999999999944311000000 0 00
Q ss_pred cccCcccccccCCCCCCcceeEEEEEEEEeEeeccchhhHHHHhhhh-ccCCCCceecChhhHHHHHHHHHHhhc
Q 004035 700 VRRNDCETQLIGEPTGELYDVILYFGIIDILQDYDISKKLEHAYKSM-QYDPTSISAVDPRQYSRRFRDFIYRAF 773 (777)
Q Consensus 700 ~~~~~~~~~~~g~~~~~~~~~v~y~GIIDiLq~Y~~~KklEh~~Ksl-~~d~~~IS~V~P~~Ya~RF~~fi~~iF 773 (777)
....++..+...+.+||+|||||||+||++|++||++|++ .+++.+||||||++||+||++||.++|
T Consensus 185 -------~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 185 -------PSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCDGQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --------TTTTTTCCCETTEEEEEEEE-S-EETT------------------SSS---HHHHHHHHHHHHHHH-
T ss_pred -------cccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHhC
Confidence 0000111223356799999999999999999999999998 677899999999999999999999987
No 6
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-58 Score=496.57 Aligned_cols=309 Identities=33% Similarity=0.434 Sum_probs=242.1
Q ss_pred CCCccCceeccCCchhHHHHHHHHhhhhhhcCCCCCccccCCccCCCccceeeecCCCCCCCCCCCCcccceEEEEeCHH
Q 004035 366 TPKKQGETIARGHKNYELMLNLQLGIRHSVGRPAPATSLDLKASAFDPKEKVWTKFPPEGSKHTPPHQSCEFKWKDYCPV 445 (777)
Q Consensus 366 ~~~~~g~~i~~gh~~~~l~~~~~~Gir~sv~~~~~~~~~~l~~~df~~~~~~~~~f~~~gs~~tp~h~~~~f~~kdY~P~ 445 (777)
...-.|..|-.||+||-..+||..|||.+++++... +++.-|..-++ .+|. ...+|+||+|||.
T Consensus 281 e~~l~~~~le~gh~n~~~synmltgirvtlsr~e~i---M~~~tdth~~e------------~~~e-g~~~~s~K~y~~e 344 (612)
T COG5253 281 ERLLNGMPLEGGHRNPQESYNMLTGIRVTLSRIEEI---MIKKTDTHLNE------------QFEE-GLYEFSCKDYFPE 344 (612)
T ss_pred hhhccccccccccccchhhhhhhhhhHHHHHHHHHH---hcCCcCccchh------------hccc-cceeeeHHhhCHH
Confidence 344556678999999999999999999999998432 22222332222 1222 2358999999999
Q ss_pred HHHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHHHhhccccccee
Q 004035 446 VFRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFENTLVT 525 (777)
Q Consensus 446 vF~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~TLL~ 525 (777)
+||.||++||++++ +..++. ...|.|+ ++||||||||+|.|.|||||||+++|+..|+.++-.||.|+..||+||||
T Consensus 345 ~Fr~lR~l~g~~~a-lvsl~s-ryil~E~-~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~np~T~l~ 421 (612)
T COG5253 345 VFRELRALCGCDEA-LVSLLS-RYILWES-NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLFNPLTLLC 421 (612)
T ss_pred HHHHHHHHhCCcHH-HHHHHh-hhheecc-CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCchHHHH
Confidence 99999999999998 554443 4456664 59999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeC----CCccEEEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCccccccchh---hhccC
Q 004035 526 KFFGLHCVKLTG----TAQKKVRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLKDLDLNF---IFRLQ 598 (777)
Q Consensus 526 k~~Gl~~i~~~~----~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~~~---~~~l~ 598 (777)
||||+|+|++.. ....|+|||||+|||+.+. ||++||||||+.+|.++..........++||++|-. ++..+
T Consensus 422 ki~G~yrv~~~~s~~~~k~~K~~fiVMeNlf~~~~-i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g 500 (612)
T COG5253 422 KIFGFYRVKSRSSISSSKSRKIYFIVMENLFYPHG-IHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFG 500 (612)
T ss_pred HHhceeEEeccccccccccceeEEEEecccCCCCC-cceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhh
Confidence 999999998754 2457999999999999886 999999999999999876543333445556666522 23344
Q ss_pred HHHHHHHHHHHhhhhHHHhhccccccceEeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 004035 599 KVWFQEFCRQVDRDCDFLEQERIMDYSLLIGVHFREAVSYRDSHTPPRTSGARTPRGNAELDNEPAAPRLSRVDMDQLLL 678 (777)
Q Consensus 599 ~~~~~~l~~ql~~D~~FL~~~~ImDYSLLvGih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 678 (777)
..++.|+.||.+|++||+++||||||||||||+.... . ++.. +.
T Consensus 501 -~~Kk~~~sqv~~Dv~fLsklniMDYSllVgi~~~~~~-----~-----------------------------~V~~-I~ 544 (612)
T COG5253 501 -LKKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDEREE-----A-----------------------------SVGL-II 544 (612)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCccceeEEEEeccchhh-----c-----------------------------chHH-HH
Confidence 6788899999999999999999999999999966410 0 0000 00
Q ss_pred CcccccccccCCCCccccccccccCcccccccCCCCCCcceeEEEEEEEEeEeeccchhhHHHHhhhhccCCCCceecCh
Q 004035 679 DPTRWASIKLGVNMPARVEQTVRRNDCETQLIGEPTGELYDVILYFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDP 758 (777)
Q Consensus 679 ~~~~~~~~~lg~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~v~y~GIIDiLq~Y~~~KklEh~~Ksl~~d~~~IS~V~P 758 (777)
+ .++ +....+.+||+||||+|+.|...| ...+++|+|
T Consensus 545 d-------------------~i~------------t~~t~Dk~~~~gI~d~lt~~s~~k------------~~~~t~v~p 581 (612)
T COG5253 545 D-------------------FIR------------TRMTGDKKLESGIKDKLTVGSFTK------------RKEPTAVTP 581 (612)
T ss_pred h-------------------hhc------------cccccceeeeeehhhhhccceeee------------cccceecCH
Confidence 0 000 012346789999999999999999 456899999
Q ss_pred hhHHHHHHHHHHhhc
Q 004035 759 RQYSRRFRDFIYRAF 773 (777)
Q Consensus 759 ~~Ya~RF~~fi~~iF 773 (777)
.+|+.||++||+.+.
T Consensus 582 ~~y~nrf~~~~e~yi 596 (612)
T COG5253 582 RQYKNRFRKAMEAYI 596 (612)
T ss_pred HHHHHHHHHhHHHhh
Confidence 999999999998753
No 7
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-47 Score=455.25 Aligned_cols=249 Identities=33% Similarity=0.486 Sum_probs=218.0
Q ss_pred cceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHH
Q 004035 435 CEFKWKDYCPVVFRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYN 514 (777)
Q Consensus 435 ~~f~~kdY~P~vF~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~ 514 (777)
..|.++.|++..|+.||+.++-++++|+.||+. +.+|-+.+|||||+|+.|.|+|||||.|++.|++.|++|+|+||+
T Consensus 1324 ~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsR--c~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFk 1401 (1598)
T KOG0230|consen 1324 AKYSVKCYYAEQFRALRKICCPSEEDFIRSLSR--CVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFK 1401 (1598)
T ss_pred eEEEEEEEehhhHHHHHHhhCchHHHHHHHHhc--CcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHH
Confidence 467899999999999999999999999999995 456669999999999999999999999999999999999999999
Q ss_pred Hhhc----ccccceeeEEEEEEEEEeC---CCccEEEEEEEeccccccceeEEEEecCCCccCCCCCCCCCCCCCCCccc
Q 004035 515 HVRA----FENTLVTKFFGLHCVKLTG---TAQKKVRFVIMGNLFCSEYVIHRRFDLKGSSHGRTTAKPQTAVDPTTTLK 587 (777)
Q Consensus 515 h~~~----n~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lK 587 (777)
||.+ --.|.|+||||+|+|.++. +..-|+.++||+|||+.. .+.++||||||.++|.+.... ....+|-
T Consensus 1402 Yl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLfY~r-~vsRifDLKGS~RnR~v~~t~---~~d~VLL 1477 (1598)
T KOG0230|consen 1402 YLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLFYGR-KVSRIFDLKGSLRNRYVPTTS---GADEVLL 1477 (1598)
T ss_pred HHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhhhcc-ccceeeeccchhhhccCCCCC---CCceEEe
Confidence 9963 2339999999999998753 334688999999999965 889999999999999997643 5678888
Q ss_pred cccch-----hhhccCHHHHHHHHHHHhhhhHHHhhccccccceEeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 004035 588 DLDLN-----FIFRLQKVWFQEFCRQVDRDCDFLEQERIMDYSLLIGVHFREAVSYRDSHTPPRTSGARTPRGNAELDNE 662 (777)
Q Consensus 588 DlD~~-----~~~~l~~~~~~~l~~ql~~D~~FL~~~~ImDYSLLvGih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (777)
|-+|- ..|.+....+..|-++|.+||.||++++||||||||||.+..
T Consensus 1478 DeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~---------------------------- 1529 (1598)
T KOG0230|consen 1478 DENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVDDEN---------------------------- 1529 (1598)
T ss_pred cHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEeeCCC----------------------------
Confidence 87773 347788899999999999999999999999999999995332
Q ss_pred CCCCCCccccccccccCcccccccccCCCCccccccccccCcccccccCCCCCCcceeEEEEEEEEeEeeccchhhHHHH
Q 004035 663 PAAPRLSRVDMDQLLLDPTRWASIKLGVNMPARVEQTVRRNDCETQLIGEPTGELYDVILYFGIIDILQDYDISKKLEHA 742 (777)
Q Consensus 663 ~~~~~~~~~~~d~~~~~~~~~~~~~lg~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~v~y~GIIDiLq~Y~~~KklEh~ 742 (777)
..|++||||++++|||.||||.+
T Consensus 1530 ---------------------------------------------------------~ELvlGIIDfiRtYTWDKkLESW 1552 (1598)
T KOG0230|consen 1530 ---------------------------------------------------------NELVLGIIDFIRTYTWDKKLESW 1552 (1598)
T ss_pred ---------------------------------------------------------CeEEEEehHhhhhhhhhhhhhhh
Confidence 12789999999999999999999
Q ss_pred hhhhc-cCC--CCceecChhhHHHHHHHHHHhhcc
Q 004035 743 YKSMQ-YDP--TSISAVDPRQYSRRFRDFIYRAFV 774 (777)
Q Consensus 743 ~Ksl~-~d~--~~IS~V~P~~Ya~RF~~fi~~iF~ 774 (777)
.|.-- -.| ...++|.|++|.+||+++|..||.
T Consensus 1553 VK~sGl~gpk~~~PTVVSP~qYK~RFRkAMd~YfL 1587 (1598)
T KOG0230|consen 1553 VKSSGLGGPKNKQPTVVSPEQYKTRFRKAMDTYFL 1587 (1598)
T ss_pred eeccccccCCCCCCceeCHHHHHHHHHHHHhheee
Confidence 99742 222 468899999999999999999985
No 8
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=2.8e-36 Score=352.61 Aligned_cols=196 Identities=33% Similarity=0.733 Sum_probs=180.6
Q ss_pred ccccCCCCCCCCceeeeEEEecCCCEEEEEEECCeeeeEEEEEEcCCcEEEEEEECCeEeeEEEEEeCCCCEEEEEEeCC
Q 004035 38 VYNVDDDEHGPGEVYHAERVLANGDFYTGQWADNLPHGQGKYLWTDGCMYVGEWYRGKTMGKGKFSWPSGATYEGDFKGG 117 (777)
Q Consensus 38 ~~~~~~~~~~~g~~~~g~~~~~nG~~Y~G~~~~~~~hG~G~~~~~dG~~YeG~w~ngk~~G~G~~~~~~G~~YeG~f~~G 117 (777)
+...++.+|+.| +.+++||.+|+|+|.++++||.|++.|++|.+|+|+|.+|++||.|++++++|.+|+|+|++|
T Consensus 13 Ge~~~g~~hG~G-----~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~g 87 (765)
T PLN03185 13 GSLLGNVPEGPG-----KYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLN 87 (765)
T ss_pred EEEECCccccce-----EEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEEEEeCC
Confidence 345677777655 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEEEecCCCEEEEEEEeEeecCcceeeecCCCcccceeecCeeecceEEEecCCcEEEEEEeCCeEeeeEEEEEe
Q 004035 118 YMDGIGTYTGSVGNTYKGSWIMNLKHGKGTKSFSNGDYYEGEWRRGLQDGHGRYQWKNGNHYIGQWKNGMINGNGTMIWS 197 (777)
Q Consensus 118 ~~~G~G~~~~~~G~~Y~G~f~~g~~~G~G~~~y~nG~~YeG~f~~G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~ 197 (777)
++||.|+++++||++|+|+|++|+++|.|++.++||.+|+|+|++|+++|.|+++|+||.+|+|+|.+|++||.|+++|+
T Consensus 88 kkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~G~y~~~ 167 (765)
T PLN03185 88 LKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWS 167 (765)
T ss_pred cccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceeeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEcCCeeeeeEEEEeCCCC---EEEEEEeCCCcccceEE
Q 004035 198 CGNRYDGFWEDGLPKGNGTFRWADGS---FYVGVWSKDPKEQNGTY 240 (777)
Q Consensus 198 nG~~Y~G~w~nG~~~G~G~~~~~dG~---~y~G~w~~g~~~G~G~~ 240 (777)
||.+|+|.|.+|++||.|+++ ++|+ .+.|.|.+ ...+.|+.
T Consensus 168 DG~~Y~G~W~~G~~~G~G~~y-~~G~~~p~~~~~~~~-~l~~~g~~ 211 (765)
T PLN03185 168 DGGCYVGTWTRGLKDGKGVFY-PAGSRVPAVQEFYLN-ALRKRGVL 211 (765)
T ss_pred CCCEEEEEeeCCceEeEEEEE-ECCCcccccchhhhh-cccccccc
Confidence 999999999999999999985 6777 36666764 44455554
No 9
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=7.8e-18 Score=156.90 Aligned_cols=131 Identities=32% Similarity=0.554 Sum_probs=105.0
Q ss_pred CCEEEEEEeCCEEeeEEEEEecCCCEEEEEEEeEeecCcceeeecCCCcccceeecCeeecceEEEecCCcEEEEEEeCC
Q 004035 107 GATYEGDFKGGYMDGIGTYTGSVGNTYKGSWIMNLKHGKGTKSFSNGDYYEGEWRRGLQDGHGRYQWKNGNHYIGQWKNG 186 (777)
Q Consensus 107 G~~YeG~f~~G~~~G~G~~~~~~G~~Y~G~f~~g~~~G~G~~~y~nG~~YeG~f~~G~~~G~G~~~~~nG~~Y~G~fknG 186 (777)
+..|++.|..++..|.+++..+++.++.|..++++..|.|.+.+.+|..|+|.++|++++|.|++.++||++|+|.|+++
T Consensus 8 g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 8 GLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred heeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCc
Confidence 45677777777777777777777777777777777777888888888888888888888888888888888888888888
Q ss_pred eEeeeEEEEEecCCEEEEEEcCCeeeeeEEEEeCCCCEEEEEEeCCCcccc
Q 004035 187 MINGNGTMIWSCGNRYDGFWEDGLPKGNGTFRWADGSFYVGVWSKDPKEQN 237 (777)
Q Consensus 187 k~~G~G~~~~~nG~~Y~G~w~nG~~~G~G~~~~~dG~~y~G~w~~g~~~G~ 237 (777)
+++|.|+....+|.+|.|.|.+|+..|.|.+..+||++|+|.|+.+..+++
T Consensus 88 ~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 88 KFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred cccceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 888888888888888888888888888888888888888888888776654
No 10
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=9.1e-18 Score=156.47 Aligned_cols=131 Identities=33% Similarity=0.553 Sum_probs=77.2
Q ss_pred CcEEEEEEECCeEeeEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCCEEEEEEEeEeecCcceeeecCCCcccceeecC
Q 004035 84 GCMYVGEWYRGKTMGKGKFSWPSGATYEGDFKGGYMDGIGTYTGSVGNTYKGSWIMNLKHGKGTKSFSNGDYYEGEWRRG 163 (777)
Q Consensus 84 G~~YeG~w~ngk~~G~G~~~~~~G~~YeG~f~~G~~~G~G~~~~~~G~~Y~G~f~~g~~~G~G~~~y~nG~~YeG~f~~G 163 (777)
+..|++.|..++..|.+++..++++++.|.+++++..|.|.+.+.+|..|+|.++|++.+|.|++.++||+.|+|.|.++
T Consensus 8 g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 8 GLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred heeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555666666666666
Q ss_pred eeecceEEEecCCcEEEEEEeCCeEeeeEEEEEecCCEEEEEEcCCeeeee
Q 004035 164 LQDGHGRYQWKNGNHYIGQWKNGMINGNGTMIWSCGNRYDGFWEDGLPKGN 214 (777)
Q Consensus 164 ~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~nG~~Y~G~w~nG~~~G~ 214 (777)
+.+|.|.+...+|..|+|.|.+|+.+|.|.+...+|.+|+|.|+.+++++.
T Consensus 88 ~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 88 KFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred cccceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 666666666666666666666666666666666666666666666665554
No 11
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.72 E-value=8e-18 Score=190.80 Aligned_cols=183 Identities=30% Similarity=0.528 Sum_probs=149.1
Q ss_pred CCEEEEEEECCeeeeEEEEEEcCCcEEEEEEECCeEeeEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCCEEEEEEEeE
Q 004035 61 GDFYTGQWADNLPHGQGKYLWTDGCMYVGEWYRGKTMGKGKFSWPSGATYEGDFKGGYMDGIGTYTGSVGNTYKGSWIMN 140 (777)
Q Consensus 61 G~~Y~G~~~~~~~hG~G~~~~~dG~~YeG~w~ngk~~G~G~~~~~~G~~YeG~f~~G~~~G~G~~~~~~G~~Y~G~f~~g 140 (777)
...|.|.. +...|.|...+++|++|+|+|++++++|.|..++++|..|+|+|.++++||+|++++++|.+|+|.|.++
T Consensus 121 ~~~~~~~~--~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~ 198 (455)
T KOG0231|consen 121 SGGEEGEE--GTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNN 198 (455)
T ss_pred cccccccc--cccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeecc
Confidence 33444444 5677777778888888888888888888888888888888888888888888888888888888888887
Q ss_pred ----eecCcceeeecC----------CCcccceeec-CeeecceEEEecCCcEEEEEEeCCeEeeeEEEEEecCCEEEEE
Q 004035 141 ----LKHGKGTKSFSN----------GDYYEGEWRR-GLQDGHGRYQWKNGNHYIGQWKNGMINGNGTMIWSCGNRYDGF 205 (777)
Q Consensus 141 ----~~~G~G~~~y~n----------G~~YeG~f~~-G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~nG~~Y~G~ 205 (777)
.++|.+.+.+.+ ..+|.++|.. +..++.+.+...+|..|.+.|..+..+|.+.+.++|+..|.|.
T Consensus 199 ~l~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 278 (455)
T KOG0231|consen 199 ILEALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGSGYVGE 278 (455)
T ss_pred cccccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceeccccccccCc
Confidence 788888887775 5678888888 8888888888888888888888888888888888888888888
Q ss_pred EcCCeeeeeEEEEeCCCCEEEEEEeCCCcccceEEEcCCC
Q 004035 206 WEDGLPKGNGTFRWADGSFYVGVWSKDPKEQNGTYYPSGS 245 (777)
Q Consensus 206 w~nG~~~G~G~~~~~dG~~y~G~w~~g~~~G~G~~y~~g~ 245 (777)
|..+.++|.+++.+.++..+++.|..+.+.|.+.+..+..
T Consensus 279 ~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 318 (455)
T KOG0231|consen 279 FKQDKKHGGGQFLFLNGSEYEGWFREGPKSGLGGFTFDKG 318 (455)
T ss_pred ceeccccCcceeeeccccccccccccCccccccccccCCC
Confidence 8888888888888888888888888888888888766543
No 12
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.71 E-value=8.5e-18 Score=190.57 Aligned_cols=184 Identities=29% Similarity=0.629 Sum_probs=172.5
Q ss_pred ceeeeEEEecCCCEEEEEEECCeeeeEEEEEEcCCcEEEEEEECCeEeeEEEEEeCCCCEEEEEEeCC----EEeeEEEE
Q 004035 50 EVYHAERVLANGDFYTGQWADNLPHGQGKYLWTDGCMYVGEWYRGKTMGKGKFSWPSGATYEGDFKGG----YMDGIGTY 125 (777)
Q Consensus 50 ~~~~g~~~~~nG~~Y~G~~~~~~~hG~G~~~~~dG~~YeG~w~ngk~~G~G~~~~~~G~~YeG~f~~G----~~~G~G~~ 125 (777)
....+...++||++|+|+|.++++||.|++++++|..|+|+|.++++||+|++++|+|..|+|.|.++ .++|.+.+
T Consensus 131 ~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~gk~~~ 210 (455)
T KOG0231|consen 131 RSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRHGKGRY 210 (455)
T ss_pred cCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeecccccccccceEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred EecC----------CCEEEEEEEe-EeecCcceeeecCCCcccceeecCeeecceEEEecCCcEEEEEEeCCeEeeeEEE
Q 004035 126 TGSV----------GNTYKGSWIM-NLKHGKGTKSFSNGDYYEGEWRRGLQDGHGRYQWKNGNHYIGQWKNGMINGNGTM 194 (777)
Q Consensus 126 ~~~~----------G~~Y~G~f~~-g~~~G~G~~~y~nG~~YeG~f~~G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~ 194 (777)
.+.+ ..+|.++|.. ...|+.+.....+|..|.+.|..+...|.+++.+.++..|.|.|..+.++|.+.+
T Consensus 211 ~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~~~~ 290 (455)
T KOG0231|consen 211 KFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGSGYVGEFKQDKKHGGGQF 290 (455)
T ss_pred EEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceeccccccccCcceeccccCccee
Confidence 9986 6789999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCEEEEEEcCCeeeeeEEEEeCCCC-EEEEEEeCCC
Q 004035 195 IWSCGNRYDGFWEDGLPKGNGTFRWADGS-FYVGVWSKDP 233 (777)
Q Consensus 195 ~~~nG~~Y~G~w~nG~~~G~G~~~~~dG~-~y~G~w~~g~ 233 (777)
.+.++..+++.|..+...|.+.++..++. .-.+.|..+.
T Consensus 291 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (455)
T KOG0231|consen 291 LFLNGSEYEGWFREGPKSGLGGFTFDKGPAPRSIPWSSGL 330 (455)
T ss_pred eeccccccccccccCccccccccccCCCCccccccccccc
Confidence 99999999999999999999999998876 4445555443
No 13
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=6.7e-05 Score=78.73 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=38.5
Q ss_pred EEeEeecCcceeeecCCCc-ccceeecCeeecceEEEecCCcE-EEEEEeCCeEeeeEEEEEecCCE-EEEEEcCCeeee
Q 004035 137 WIMNLKHGKGTKSFSNGDY-YEGEWRRGLQDGHGRYQWKNGNH-YIGQWKNGMINGNGTMIWSCGNR-YDGFWEDGLPKG 213 (777)
Q Consensus 137 f~~g~~~G~G~~~y~nG~~-YeG~f~~G~~~G~G~~~~~nG~~-Y~G~fknGk~~G~G~~~~~nG~~-Y~G~w~nG~~~G 213 (777)
|.+++.||.-..+|+||.. ++..|+++.++|....++++|.+ .+-.+++|+++|.-..++.||.. .+..|+||+++|
T Consensus 128 ~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G 207 (230)
T COG2849 128 YKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDG 207 (230)
T ss_pred ecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccc
Confidence 3344444444444444432 34444444444444444444442 23444444444444444444443 444444444444
Q ss_pred eEEEEeCCCC
Q 004035 214 NGTFRWADGS 223 (777)
Q Consensus 214 ~G~~~~~dG~ 223 (777)
.=..+...|.
T Consensus 208 ~~~~yde~G~ 217 (230)
T COG2849 208 VVKEYDEAGK 217 (230)
T ss_pred cEEEEecCCC
Confidence 4444444444
No 14
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.00022 Score=74.86 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=130.0
Q ss_pred ceeeeEEEecCCCEEEEEEECC---eeeeEEEEEEcCCcE-EEEEEECCeEeeEEEEEeCCCCEE-EEEEeCCEEeeEEE
Q 004035 50 EVYHAERVLANGDFYTGQWADN---LPHGQGKYLWTDGCM-YVGEWYRGKTMGKGKFSWPSGATY-EGDFKGGYMDGIGT 124 (777)
Q Consensus 50 ~~~~g~~~~~nG~~Y~G~~~~~---~~hG~G~~~~~dG~~-YeG~w~ngk~~G~G~~~~~~G~~Y-eG~f~~G~~~G~G~ 124 (777)
.+...+..+.|+. ..+.+..+ ..+|.-..+.+||.. ..-.++||+++|.-..++++|... +-.|.+|..+|.-.
T Consensus 60 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~ 138 (230)
T COG2849 60 EVKSKEEYYDNGT-LKGEYLEGKKTPFTGIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQK 138 (230)
T ss_pred eEeeeeEEEecCc-eeEEEecccccCCcceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEE
Confidence 3444455555542 23444444 468877777788764 788899999999999999999854 67899999999999
Q ss_pred EEecCCCE-EEEEEEeEeecCcceeeecCCCc-ccceeecCeeecceEEEecCCcE-EEEEEeCCeEeeeEEEEEecCCE
Q 004035 125 YTGSVGNT-YKGSWIMNLKHGKGTKSFSNGDY-YEGEWRRGLQDGHGRYQWKNGNH-YIGQWKNGMINGNGTMIWSCGNR 201 (777)
Q Consensus 125 ~~~~~G~~-Y~G~f~~g~~~G~G~~~y~nG~~-YeG~f~~G~~~G~G~~~~~nG~~-Y~G~fknGk~~G~G~~~~~nG~~ 201 (777)
..+++|.. ++..|+++..+|....+|+||.+ .+-.+++|.++|.-..++.+|.. .+..|++|+++|.-..+..+|.+
T Consensus 139 ~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~ 218 (230)
T COG2849 139 EYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKL 218 (230)
T ss_pred EEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecCCCE
Confidence 99999986 89999999989999999999985 78899999999999999999984 77999999999998888878775
Q ss_pred -EEEEEcCCe
Q 004035 202 -YDGFWEDGL 210 (777)
Q Consensus 202 -Y~G~w~nG~ 210 (777)
-+..+.+|+
T Consensus 219 i~~~~y~~g~ 228 (230)
T COG2849 219 IKETLYKNGK 228 (230)
T ss_pred EEEEEeeCCc
Confidence 566666665
No 15
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.00 E-value=0.0011 Score=45.65 Aligned_cols=21 Identities=33% Similarity=0.926 Sum_probs=11.2
Q ss_pred EEEEEEECCeeeeEEEEEEcC
Q 004035 63 FYTGQWADNLPHGQGKYLWTD 83 (777)
Q Consensus 63 ~Y~G~~~~~~~hG~G~~~~~d 83 (777)
.|+|+|.++++||.|++.|+|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 355555555555555555544
No 16
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=96.95 E-value=0.001 Score=45.79 Aligned_cols=21 Identities=38% Similarity=1.047 Sum_probs=14.3
Q ss_pred EEEEEEcCCeeeeeEEEEeCC
Q 004035 201 RYDGFWEDGLPKGNGTFRWAD 221 (777)
Q Consensus 201 ~Y~G~w~nG~~~G~G~~~~~d 221 (777)
+|+|+|.+|++||.|+++|+|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 466777777777777766665
No 17
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=96.93 E-value=0.00078 Score=44.71 Aligned_cols=22 Identities=41% Similarity=0.966 Sum_probs=11.0
Q ss_pred EEEEEECCeeeeEEEEEEcCCc
Q 004035 64 YTGQWADNLPHGQGKYLWTDGC 85 (777)
Q Consensus 64 Y~G~~~~~~~hG~G~~~~~dG~ 85 (777)
|+|+|.++++||.|++.|+||+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 4555555555555555555554
No 18
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=96.86 E-value=0.00079 Score=44.69 Aligned_cols=22 Identities=36% Similarity=1.025 Sum_probs=10.8
Q ss_pred EEEEEcCCeeeeeEEEEeCCCC
Q 004035 202 YDGFWEDGLPKGNGTFRWADGS 223 (777)
Q Consensus 202 Y~G~w~nG~~~G~G~~~~~dG~ 223 (777)
|+|.|.+|+++|.|+++++||+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 4455555555555555555543
No 19
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=65.02 E-value=82 Score=32.09 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.0
Q ss_pred eeEEEEEecCC
Q 004035 190 GNGTMIWSCGN 200 (777)
Q Consensus 190 G~G~~~~~nG~ 200 (777)
|.-++.++||.
T Consensus 119 G~k~i~~pnGq 129 (179)
T PF07202_consen 119 GDKTITFPNGQ 129 (179)
T ss_pred CcEEEEeCCCc
Confidence 33444445554
No 20
>PLN02667 inositol polyphosphate multikinase
Probab=58.24 E-value=16 Score=39.85 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=44.2
Q ss_pred EecCCceEEEecC-----HHHHHHHHHHHHHHHHHhhccc------ccceeeEEEEEEEEEeCCCccEEEEEEEeccccc
Q 004035 486 LTNDDKYMIKTMK-----KAEVKVLIRMLPAYYNHVRAFE------NTLVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCS 554 (777)
Q Consensus 486 ~T~D~rfiIKti~-----~~E~~~l~~~Lp~Y~~h~~~n~------~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~ 554 (777)
++.|+..|+|-+. ..|++|-..+ ...+ ..++|+|+|...+....+ + .||||+||-..
T Consensus 22 L~~~~g~~~Kp~~~~~rg~rE~~FY~~~--------~~~~~~~~~L~~~~P~y~G~~~~~~~~~--~--~~i~LeDLt~g 89 (286)
T PLN02667 22 LVDDSGRFYKPLQDDSRGEREAAFYESF--------SSDTRVPDHIRRFFPVFHGTQLVEASDG--S--GLLVLEDLLAG 89 (286)
T ss_pred eEcCCCcEEeccCCcccchHHHHHHHHH--------hccccchHHHHhhCcccceeEeeccCCC--c--eeEEehHHhcC
Confidence 3557778899997 6788875544 3222 257899999977765433 2 57999999542
Q ss_pred cceeEEEEecC
Q 004035 555 EYVIHRRFDLK 565 (777)
Q Consensus 555 ~~~i~~~yDLK 565 (777)
..--.+-|||
T Consensus 90 -~~~PcVlDlK 99 (286)
T PLN02667 90 -YTKPCVMDVK 99 (286)
T ss_pred -CCCCeEEEEE
Confidence 1223456777
No 21
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=55.55 E-value=1.9e+02 Score=29.48 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=31.7
Q ss_pred eEeeEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCCEEEEEEEeEeecCcceeeecCCCcccceeecCeeecceEEEec
Q 004035 95 KTMGKGKFSWPSGATYEGDFKGGYMDGIGTYTGSVGNTYKGSWIMNLKHGKGTKSFSNGDYYEGEWRRGLQDGHGRYQWK 174 (777)
Q Consensus 95 k~~G~G~~~~~~G~~YeG~f~~G~~~G~G~~~~~~G~~Y~G~f~~g~~~G~G~~~y~nG~~YeG~f~~G~~~G~G~~~~~ 174 (777)
.++|.=.+.+|||.+ |=.|-+| .=.+.++||.+ +.-..+|.=...|+||.+ .--..+|.-+..++
T Consensus 62 ~pdG~ev~~FpngQ~-E~h~pDG----~keI~fPDGt~-----k~~~~dG~e~~~fpDGT~-----~~~~~nG~k~i~~p 126 (179)
T PF07202_consen 62 YPDGLEVYEFPNGQI-EKHYPDG----SKEIVFPDGTI-----KYIHPDGREETVFPDGTI-----VTIDPNGDKTITFP 126 (179)
T ss_pred cCCCcEEEEeCCCce-EEEcCCC----CEEEEeCCCcE-----EEEeCCCcEEEECCCceE-----EEEeCCCcEEEEeC
Confidence 344444555555432 2233333 23455555543 112233333445555443 22234555666667
Q ss_pred CCcEEE
Q 004035 175 NGNHYI 180 (777)
Q Consensus 175 nG~~Y~ 180 (777)
||...+
T Consensus 127 nGq~ei 132 (179)
T PF07202_consen 127 NGQKEI 132 (179)
T ss_pred CCcEEE
Confidence 766433
No 22
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=54.53 E-value=4.4 Score=40.31 Aligned_cols=39 Identities=28% Similarity=0.640 Sum_probs=23.8
Q ss_pred HHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEE
Q 004035 449 TLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIK 495 (777)
Q Consensus 449 ~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIK 495 (777)
.|....++.+-|=..|+. .+.|+-+++||.|.|.||||=
T Consensus 115 ~lK~RlnL~EgDPViS~G--------Dt~GRRaALFYRtSdEr~ill 153 (230)
T PF12226_consen 115 QLKDRLNLTEGDPVISMG--------DTTGRRAALFYRTSDERYILL 153 (230)
T ss_dssp HHHHHHT--TT-EEEEEE--------ETT--EEEEEEETTTTEEEEE
T ss_pred HHHHhhccccCCceeeec--------CCCCceEEEEEeccCceEEEE
Confidence 555566655543333332 367999999999999999973
No 23
>PF14977 FAM194: FAM194 protein
Probab=31.94 E-value=2.6e+02 Score=29.20 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCEEEEEEeCCEEeeEEEEEecCCC--EEEEEEEeEeecCcceeeecCCC
Q 004035 98 GKGKFSWPSGATYEGDFKGGYMDGIGTYTGSVGN--TYKGSWIMNLKHGKGTKSFSNGD 154 (777)
Q Consensus 98 G~G~~~~~~G~~YeG~f~~G~~~G~G~~~~~~G~--~Y~G~f~~g~~~G~G~~~y~nG~ 154 (777)
|-|.++||+|.+=.-.... ...+.-++.+.|.. ...+.|. .+|.|.+++++|.
T Consensus 24 Gsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd---~~G~g~~y~~~g~ 78 (208)
T PF14977_consen 24 GSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFD---SSGHGTCYHPNGN 78 (208)
T ss_pred CCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEc---CCCCEEEEcCCCC
Confidence 4555555555543333332 22223333333322 1333332 2455555555554
No 24
>PF14977 FAM194: FAM194 protein
Probab=26.17 E-value=2.7e+02 Score=29.10 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=38.0
Q ss_pred eeecCCCcccceeecCeeecceEEEecCCcEEEEEEeCCeEeeeEEEEEecCCE--EEEEEcCCeeeeeEEEEeCCCC
Q 004035 148 KSFSNGDYYEGEWRRGLQDGHGRYQWKNGNHYIGQWKNGMINGNGTMIWSCGNR--YDGFWEDGLPKGNGTFRWADGS 223 (777)
Q Consensus 148 ~~y~nG~~YeG~f~~G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~nG~~--Y~G~w~nG~~~G~G~~~~~dG~ 223 (777)
..|++|.++.=. ..+|-|..+|++|++=+-.... +..+.-.+++.|... ..+.|. .+|.|++++++|.
T Consensus 9 ~~Y~~g~~f~~~----f~DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd---~~G~g~~y~~~g~ 78 (208)
T PF14977_consen 9 KYYKNGRKFHYM----FPDGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFD---SSGHGTCYHPNGN 78 (208)
T ss_pred eeCCCCcEEEEE----cCCCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEc---CCCCEEEEcCCCC
Confidence 345555544322 3456677777777765555544 333444555555432 455554 3577777777776
No 25
>PRK10345 hypothetical protein; Provisional
Probab=24.37 E-value=2.2e+02 Score=29.43 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCCccceEEEecCCceEEEecCHH----HHHHHHHHHHHHHHHhhc--ccccceeeEEEEEEEEEeCCCccEEEEEEEe
Q 004035 476 SPGKSGSFFYLTNDDKYMIKTMKKA----EVKVLIRMLPAYYNHVRA--FENTLVTKFFGLHCVKLTGTAQKKVRFVIMG 549 (777)
Q Consensus 476 s~GKSGs~F~~T~D~rfiIKti~~~----E~~~l~~~Lp~Y~~h~~~--n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~ 549 (777)
..|.+|..|--.+|...+||.+... +..+.+++ .|+..+.. ..+.-|+++||.+.-.... ..+..+||+
T Consensus 11 G~G~~~~Vy~hp~~~~k~IKv~~~~~~~~~~~~~rEi--~~l~~L~~~~~~h~nIvr~yg~~et~~g~---g~v~~~I~e 85 (210)
T PRK10345 11 GTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRREL--KYYAHLSRRLIDWSGIPRYYGTVETDCGT---GYVYDVIAD 85 (210)
T ss_pred cCCCceEEEECCCCcCeEEEEEeccccchHHHHHHHH--HHHHHhhccCCCCcccceeeEEEEeCCCC---eEEEEEEec
Confidence 3466777876556888899988653 22222222 25555532 1234499999987654321 233445555
No 26
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=23.51 E-value=4.5e+02 Score=28.64 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCCccceEEEec---CCceEEEecCHHHHHHHHHHHHHHHHHhhcccccceeeEEEEEEEEEeCCCccEEEEEEEecc
Q 004035 477 PGKSGSFFYLTN---DDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNL 551 (777)
Q Consensus 477 ~GKSGs~F~~T~---D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nl 551 (777)
.|..|.+|.... ...++||.+.......+.+.+..=..-+..-.+.-|+++++++.. ....++||+.+
T Consensus 84 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~lv~e~~ 154 (353)
T PLN00034 84 SGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-------NGEIQVLLEFM 154 (353)
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-------CCeEEEEEecC
Confidence 455677765543 467999998543222222211111222333234457788887532 23456788753
No 27
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=22.73 E-value=1e+02 Score=29.60 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=47.1
Q ss_pred HHHHHHHcCCChHHHHHHhccCcccccccCCCCccceEEEecCCceEEEecCHHHHHHHHHHHHHHHH-Hh----hcccc
Q 004035 447 FRTLRKLFNVDAADYMISICGNDALRELSSPGKSGSFFYLTNDDKYMIKTMKKAEVKVLIRMLPAYYN-HV----RAFEN 521 (777)
Q Consensus 447 F~~LR~~~~i~~~dy~~Sl~~~~~l~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~-h~----~~n~~ 521 (777)
|..+-+.++-+++..+.-|. .||.+.|. +..++++||+- +.+.+.|.++|..|.+ || ..+|+
T Consensus 37 f~dI~~~L~R~p~~~~ky~~-----~ELgt~~~------id~~~~lii~G--~~~~~~i~~~L~~fI~~yVlC~~C~spd 103 (125)
T PF01873_consen 37 FVDICKALNRDPEHVLKYFG-----KELGTQGS------IDGKGRLIING--RFSSKQIQDLLDKFIKEYVLCPECGSPD 103 (125)
T ss_dssp HHHHHHHHTSSHHHHHHHHH-----HHSSSEEE------EETTTEEEEES--SSSCCHHHHHHHHHHCHHSSCTSTSSSS
T ss_pred HHHHHHHHCCCHHHHHHHHH-----HHHCCceE------ECCCCEEEEEE--ecCHHHHHHHHHHHHHHEEEcCCCCCCc
Confidence 56677777888876665554 45544442 34447999987 3344466677777763 34 36899
Q ss_pred cceeeEEEEEEEE
Q 004035 522 TLVTKFFGLHCVK 534 (777)
Q Consensus 522 TLL~k~~Gl~~i~ 534 (777)
|.|.+==+++.++
T Consensus 104 T~l~k~~r~~~l~ 116 (125)
T PF01873_consen 104 TELIKEGRLIFLK 116 (125)
T ss_dssp EEEEEETTCCEEE
T ss_pred cEEEEcCCEEEEE
Confidence 9887654444443
No 28
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=21.27 E-value=1.5e+02 Score=18.67 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=9.1
Q ss_pred eeeEEEEeCCCCE-EEEEEe
Q 004035 212 KGNGTFRWADGSF-YVGVWS 230 (777)
Q Consensus 212 ~G~G~~~~~dG~~-y~G~w~ 230 (777)
+|.-+.+++||.+ .++.|+
T Consensus 2 ~G~~~~yy~nG~l~~~~~y~ 21 (22)
T PF07661_consen 2 DGEWKFYYENGKLKSEGHYK 21 (22)
T ss_pred cceEEEEeCCCCEEEEEEEE
Confidence 3444455555553 444443
No 29
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=21.12 E-value=3.2e+02 Score=25.85 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCccceEEEec---CCceEEEecCHHHHHHHHHHHHHHHHHhhcccccceeeEEEEEEEEEeCCCccEEEEEEEecc
Q 004035 477 PGKSGSFFYLTN---DDKYMIKTMKKAEVKVLIRMLPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNL 551 (777)
Q Consensus 477 ~GKSGs~F~~T~---D~rfiIKti~~~E~~~l~~~Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nl 551 (777)
.|..|..|-... +.+++||.............+..-+..+..-.+.-++++++.... ....++||+.+
T Consensus 3 ~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~~~~~e~~ 73 (215)
T cd00180 3 EGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-------ENHLYLVMEYC 73 (215)
T ss_pred cCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-------CCeEEEEEecC
Confidence 466777776665 478999999877553223333333444443344556666665443 23567888764
No 30
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=20.61 E-value=8.5e+02 Score=24.66 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCCccceEEEec---CCceEEEecCHHHHH---HHHHHHHHHHHHhhcccccceeeEEEEEEEEEeCCCccEEEEEEEec
Q 004035 477 PGKSGSFFYLTN---DDKYMIKTMKKAEVK---VLIRMLPAYYNHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGN 550 (777)
Q Consensus 477 ~GKSGs~F~~T~---D~rfiIKti~~~E~~---~l~~~Lp~Y~~h~~~n~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~N 550 (777)
.|..|+.|--+. ...+.||++++.+.. .+..+....-.-.....+.-++++++.+.- ....++||+.
T Consensus 6 ~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~~~lv~e~ 78 (260)
T cd05611 6 KGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-------KDYLYLVMEY 78 (260)
T ss_pred cCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-------CCeEEEEEec
Confidence 466777666543 346899999765432 222222222222223344567788887632 3456788875
Q ss_pred c
Q 004035 551 L 551 (777)
Q Consensus 551 l 551 (777)
+
T Consensus 79 ~ 79 (260)
T cd05611 79 L 79 (260)
T ss_pred c
Confidence 3
No 31
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.41 E-value=74 Score=27.54 Aligned_cols=37 Identities=19% Similarity=0.464 Sum_probs=28.0
Q ss_pred chhhHHHHhhhhccCCCCceecChhhHHHHHHHHHHhhccc
Q 004035 735 ISKKLEHAYKSMQYDPTSISAVDPRQYSRRFRDFIYRAFVE 775 (777)
Q Consensus 735 ~~KklEh~~Ksl~~d~~~IS~V~P~~Ya~RF~~fi~~iF~~ 775 (777)
+.|.+=|+|..+..-... .|..|+.||++||..=|..
T Consensus 7 LQrqVlhlYR~~lraa~~----Kp~~~~~~~m~fvh~EFrk 43 (80)
T KOG4620|consen 7 LQRQVLHLYRDLLRAARG----KPGAEARRWMAFVHAEFRK 43 (80)
T ss_pred HHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHH
Confidence 567778888876554432 5999999999999887653
No 32
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=20.38 E-value=78 Score=25.85 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=16.1
Q ss_pred cccccCCCCccceEEEecCCceEE
Q 004035 471 LRELSSPGKSGSFFYLTNDDKYMI 494 (777)
Q Consensus 471 l~e~~s~GKSGs~F~~T~D~rfiI 494 (777)
|-|... +.|-.||.|.|++|+|
T Consensus 25 lyeV~~--~~~~i~Y~~~dg~yli 46 (57)
T PF10411_consen 25 LYEVVL--KGGGILYVDEDGRYLI 46 (57)
T ss_dssp EEEEEE---TTEEEEEETTSSEEE
T ss_pred eEEEEE--CCCeEEEEcCCCCEEE
Confidence 445444 3456999999999997
Done!