Query 004036
Match_columns 777
No_of_seqs 619 out of 3705
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 2.2E-40 4.7E-45 342.4 31.0 246 194-449 81-327 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 7.1E-38 1.5E-42 351.8 32.3 248 195-457 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-38 8.2E-43 346.3 29.5 243 196-442 3-338 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 6.7E-34 1.5E-38 331.1 28.3 236 198-441 2-245 (562)
5 KOG0145 RNA-binding protein EL 100.0 5.4E-34 1.2E-38 275.1 20.2 245 195-443 40-348 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-32 8E-37 316.5 35.2 244 195-444 87-355 (562)
7 KOG0127 Nucleolar protein fibr 100.0 1.5E-31 3.2E-36 282.4 21.7 233 196-435 5-354 (678)
8 TIGR01622 SF-CC1 splicing fact 100.0 7.7E-31 1.7E-35 298.4 26.8 239 194-443 87-438 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-30 3.8E-35 295.1 26.4 230 196-444 2-342 (481)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.2E-30 4.8E-35 298.8 26.0 239 192-443 171-492 (509)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.3E-30 2E-34 289.1 26.8 244 196-456 96-479 (481)
12 KOG0144 RNA-binding protein CU 100.0 2.5E-30 5.3E-35 266.6 19.7 247 196-446 34-497 (510)
13 TIGR01659 sex-lethal sex-letha 100.0 3.5E-28 7.6E-33 261.3 23.3 170 274-454 105-274 (346)
14 KOG0148 Apoptosis-promoting RN 100.0 9.2E-28 2E-32 234.1 21.4 219 195-449 5-234 (321)
15 TIGR01645 half-pint poly-U bin 100.0 2.6E-27 5.7E-32 266.6 27.7 158 194-357 105-279 (612)
16 KOG0123 Polyadenylate-binding 99.9 2.9E-25 6.4E-30 239.8 20.5 229 198-442 3-235 (369)
17 TIGR01659 sex-lethal sex-letha 99.9 2.6E-25 5.7E-30 239.1 18.2 164 194-361 105-274 (346)
18 KOG0123 Polyadenylate-binding 99.9 3E-24 6.5E-29 232.0 19.2 234 199-443 79-339 (369)
19 KOG0127 Nucleolar protein fibr 99.9 7.4E-24 1.6E-28 224.4 15.4 236 196-435 117-516 (678)
20 TIGR01645 half-pint poly-U bin 99.9 4.2E-23 9E-28 232.8 19.0 171 276-454 107-283 (612)
21 KOG0110 RNA-binding protein (R 99.9 9.8E-23 2.1E-27 223.3 16.6 246 193-449 382-689 (725)
22 KOG0144 RNA-binding protein CU 99.9 3.8E-23 8.3E-28 213.7 12.7 175 276-459 34-208 (510)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-22 3.7E-27 222.1 18.8 166 275-451 2-167 (352)
24 KOG0147 Transcriptional coacti 99.9 2.3E-22 4.9E-27 215.2 12.3 244 194-449 177-524 (549)
25 KOG0109 RNA-binding protein LA 99.9 1.2E-21 2.7E-26 193.2 15.8 181 277-495 3-183 (346)
26 KOG0148 Apoptosis-promoting RN 99.9 9.5E-22 2.1E-26 192.3 13.2 154 196-361 62-237 (321)
27 TIGR01622 SF-CC1 splicing fact 99.9 2E-21 4.3E-26 221.2 18.0 162 274-442 87-255 (457)
28 KOG0124 Polypyrimidine tract-b 99.9 6.9E-21 1.5E-25 192.4 18.0 146 196-344 113-275 (544)
29 TIGR01648 hnRNP-R-Q heterogene 99.9 2.7E-21 5.8E-26 218.2 15.8 191 195-399 137-367 (578)
30 KOG4212 RNA-binding protein hn 99.8 4.9E-20 1.1E-24 190.4 20.4 142 197-343 45-278 (608)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.8 4.7E-20 1E-24 212.9 17.2 160 273-443 172-365 (509)
32 KOG0145 RNA-binding protein EL 99.8 2.3E-20 4.9E-25 181.1 11.8 169 274-453 39-207 (360)
33 KOG0117 Heterogeneous nuclear 99.8 2.2E-19 4.8E-24 187.0 16.1 152 274-441 81-234 (506)
34 KOG0131 Splicing factor 3b, su 99.8 1.7E-19 3.6E-24 167.2 11.5 169 275-455 8-177 (203)
35 KOG0109 RNA-binding protein LA 99.8 6.9E-20 1.5E-24 181.0 9.6 153 197-371 3-159 (346)
36 KOG0131 Splicing factor 3b, su 99.8 2E-19 4.3E-24 166.7 9.3 166 195-365 8-180 (203)
37 KOG0110 RNA-binding protein (R 99.8 4.8E-18 1E-22 186.8 14.7 219 196-449 227-594 (725)
38 KOG0146 RNA-binding protein ET 99.8 4.7E-18 1E-22 165.6 11.5 186 265-458 2-366 (371)
39 KOG4211 Splicing factor hnRNP- 99.7 4.8E-16 1E-20 164.8 23.9 236 195-440 9-345 (510)
40 PLN03134 glycine-rich RNA-bind 99.7 2.4E-16 5.1E-21 148.9 15.8 81 371-453 32-112 (144)
41 KOG0124 Polypyrimidine tract-b 99.7 1E-16 2.3E-21 162.4 11.0 162 277-444 114-281 (544)
42 KOG4205 RNA-binding protein mu 99.7 1.9E-16 4.2E-21 165.3 11.9 234 195-437 5-256 (311)
43 KOG0107 Alternative splicing f 99.7 2.2E-15 4.7E-20 139.2 15.9 77 374-459 11-87 (195)
44 KOG1190 Polypyrimidine tract-b 99.6 1.8E-15 3.9E-20 156.2 14.9 239 195-456 27-372 (492)
45 KOG0147 Transcriptional coacti 99.6 2.7E-16 5.9E-21 168.9 8.2 169 274-449 177-354 (549)
46 KOG4205 RNA-binding protein mu 99.6 1.6E-15 3.5E-20 158.4 12.1 172 275-456 5-177 (311)
47 KOG1456 Heterogeneous nuclear 99.6 3E-14 6.5E-19 145.4 17.4 238 195-452 30-362 (494)
48 KOG0105 Alternative splicing f 99.6 2.9E-14 6.2E-19 132.4 15.6 164 275-454 5-189 (241)
49 KOG1190 Polypyrimidine tract-b 99.6 1.1E-13 2.3E-18 143.3 17.8 237 197-455 151-489 (492)
50 KOG0120 Splicing factor U2AF, 99.6 3.2E-14 6.9E-19 155.5 14.7 236 195-443 174-482 (500)
51 KOG0105 Alternative splicing f 99.6 2.5E-14 5.4E-19 132.8 10.9 140 194-346 4-175 (241)
52 KOG4207 Predicted splicing fac 99.6 3.6E-14 7.8E-19 134.2 12.1 78 374-455 14-91 (256)
53 KOG4206 Spliceosomal protein s 99.5 1.7E-13 3.8E-18 132.9 16.1 195 198-441 11-209 (221)
54 KOG0146 RNA-binding protein ET 99.5 4.3E-14 9.3E-19 138.3 9.6 160 195-361 18-364 (371)
55 PLN03134 glycine-rich RNA-bind 99.5 1.2E-13 2.7E-18 130.4 10.0 83 194-276 32-114 (144)
56 KOG1456 Heterogeneous nuclear 99.5 3E-12 6.5E-17 131.0 19.5 232 200-449 126-481 (494)
57 KOG1457 RNA binding protein (c 99.5 5.9E-13 1.3E-17 127.4 12.7 161 275-441 33-274 (284)
58 KOG4211 Splicing factor hnRNP- 99.5 7.9E-13 1.7E-17 140.6 14.7 164 278-453 12-180 (510)
59 KOG0113 U1 small nuclear ribon 99.4 4.8E-12 1E-16 126.5 18.5 81 371-453 99-179 (335)
60 KOG1365 RNA-binding protein Fu 99.4 2.4E-12 5.3E-17 132.0 14.8 245 193-441 57-350 (508)
61 KOG1548 Transcription elongati 99.4 4.3E-12 9.2E-17 129.3 15.8 192 195-444 133-343 (382)
62 KOG0122 Translation initiation 99.4 7.4E-13 1.6E-17 128.9 9.0 82 372-457 188-269 (270)
63 KOG0106 Alternative splicing f 99.4 2.8E-13 6.1E-18 133.0 5.5 146 277-444 2-162 (216)
64 KOG1457 RNA binding protein (c 99.4 3.8E-12 8.3E-17 121.9 12.8 145 196-347 34-274 (284)
65 PF00076 RRM_1: RNA recognitio 99.4 1.3E-12 2.9E-17 107.5 7.7 66 376-442 1-66 (70)
66 KOG0121 Nuclear cap-binding pr 99.3 1.3E-12 2.9E-17 114.5 6.5 72 371-442 34-105 (153)
67 PF00076 RRM_1: RNA recognitio 99.3 4.6E-12 9.9E-17 104.3 7.9 70 199-269 1-70 (70)
68 KOG0149 Predicted RNA-binding 99.3 3.8E-12 8.3E-17 123.7 7.7 77 196-273 12-88 (247)
69 KOG0149 Predicted RNA-binding 99.3 5.1E-12 1.1E-16 122.9 7.6 78 372-450 11-88 (247)
70 KOG0122 Translation initiation 99.3 5.9E-12 1.3E-16 122.7 7.9 82 195-276 188-269 (270)
71 KOG0121 Nuclear cap-binding pr 99.3 6.7E-12 1.5E-16 110.1 7.1 84 190-273 30-113 (153)
72 PF14259 RRM_6: RNA recognitio 99.2 1.8E-11 3.9E-16 101.0 7.8 66 376-442 1-66 (70)
73 KOG0106 Alternative splicing f 99.2 6.3E-12 1.4E-16 123.6 5.2 137 198-356 3-165 (216)
74 KOG4212 RNA-binding protein hn 99.2 2E-10 4.3E-15 119.9 16.3 161 274-441 42-282 (608)
75 KOG0125 Ataxin 2-binding prote 99.2 2.4E-11 5.3E-16 122.9 9.2 80 372-455 95-174 (376)
76 PF14259 RRM_6: RNA recognitio 99.2 3.2E-11 6.9E-16 99.5 8.2 70 199-269 1-70 (70)
77 COG0724 RNA-binding proteins ( 99.2 1.2E-10 2.5E-15 122.8 14.5 172 196-436 115-288 (306)
78 KOG0126 Predicted RNA-binding 99.2 2.7E-12 5.8E-17 119.4 1.3 103 335-447 7-109 (219)
79 PLN03120 nucleic acid binding 99.2 4.9E-11 1.1E-15 120.5 9.5 69 373-445 4-72 (260)
80 KOG0113 U1 small nuclear ribon 99.2 3.9E-11 8.3E-16 120.1 7.9 77 196-272 101-177 (335)
81 KOG0130 RNA-binding protein RB 99.2 7.3E-11 1.6E-15 104.4 8.5 86 370-457 69-154 (170)
82 PLN03120 nucleic acid binding 99.2 9.4E-11 2E-15 118.4 8.8 76 196-275 4-79 (260)
83 KOG4207 Predicted splicing fac 99.1 4.6E-11 1E-15 113.3 6.0 78 196-273 13-90 (256)
84 KOG0126 Predicted RNA-binding 99.1 6.3E-12 1.4E-16 116.9 -0.0 79 195-273 34-112 (219)
85 KOG0107 Alternative splicing f 99.1 5.7E-11 1.2E-15 110.3 6.0 73 196-273 10-82 (195)
86 KOG0130 RNA-binding protein RB 99.1 4.4E-11 9.6E-16 105.8 4.9 81 193-273 69-149 (170)
87 PLN03213 repressor of silencin 99.1 1.4E-10 3.1E-15 122.5 9.0 73 372-448 9-83 (759)
88 PLN03121 nucleic acid binding 99.1 2.8E-10 6E-15 113.1 9.1 68 373-444 5-72 (243)
89 smart00362 RRM_2 RNA recogniti 99.1 4.1E-10 9E-15 92.2 8.7 66 375-442 1-66 (72)
90 smart00360 RRM RNA recognition 99.1 5.8E-10 1.3E-14 91.0 8.9 65 378-442 1-65 (71)
91 KOG0125 Ataxin 2-binding prote 99.1 1.7E-10 3.7E-15 116.9 6.7 77 196-274 96-172 (376)
92 PLN03213 repressor of silencin 99.1 2.1E-10 4.7E-15 121.2 7.7 76 196-275 10-87 (759)
93 KOG0114 Predicted RNA-binding 99.1 4.8E-10 1E-14 94.9 8.0 67 373-442 18-84 (124)
94 PLN03121 nucleic acid binding 99.1 4.3E-10 9.3E-15 111.7 8.9 77 195-275 4-80 (243)
95 smart00362 RRM_2 RNA recogniti 99.1 6.9E-10 1.5E-14 90.9 8.7 72 198-271 1-72 (72)
96 KOG4661 Hsp27-ERE-TATA-binding 99.0 6.6E-10 1.4E-14 119.2 10.1 84 192-275 401-484 (940)
97 KOG0111 Cyclophilin-type pepti 99.0 1.8E-10 3.9E-15 110.1 5.1 84 372-459 9-92 (298)
98 KOG0128 RNA-binding protein SA 99.0 7.9E-11 1.7E-15 132.9 2.5 218 195-442 570-804 (881)
99 smart00360 RRM RNA recognition 99.0 1E-09 2.2E-14 89.5 7.9 71 201-271 1-71 (71)
100 KOG0111 Cyclophilin-type pepti 99.0 3.2E-10 6.8E-15 108.5 4.3 84 194-277 8-91 (298)
101 KOG0114 Predicted RNA-binding 99.0 1.7E-09 3.7E-14 91.6 7.2 76 196-274 18-93 (124)
102 cd00590 RRM RRM (RNA recogniti 98.9 5.1E-09 1.1E-13 86.2 9.1 67 375-442 1-67 (74)
103 smart00361 RRM_1 RNA recogniti 98.9 3.5E-09 7.7E-14 87.2 7.6 57 387-443 2-65 (70)
104 cd00590 RRM RRM (RNA recogniti 98.9 5.4E-09 1.2E-13 86.0 8.8 73 198-271 1-73 (74)
105 COG0724 RNA-binding proteins ( 98.9 4.1E-09 8.8E-14 111.0 9.3 71 373-443 115-185 (306)
106 KOG0116 RasGAP SH3 binding pro 98.9 6.9E-09 1.5E-13 113.0 10.8 68 374-442 289-356 (419)
107 KOG0129 Predicted RNA-binding 98.9 2.1E-08 4.4E-13 108.3 13.3 164 276-440 259-442 (520)
108 KOG0415 Predicted peptidyl pro 98.8 1.1E-09 2.3E-14 111.8 2.7 81 194-274 237-317 (479)
109 KOG0415 Predicted peptidyl pro 98.8 2.7E-09 5.9E-14 108.9 5.3 85 370-454 236-320 (479)
110 KOG0108 mRNA cleavage and poly 98.8 4E-09 8.6E-14 115.5 7.1 79 197-275 19-97 (435)
111 KOG4208 Nucleolar RNA-binding 98.8 5.5E-09 1.2E-13 100.1 7.0 76 374-449 50-126 (214)
112 KOG0120 Splicing factor U2AF, 98.8 7.1E-09 1.5E-13 114.0 8.8 159 196-359 289-489 (500)
113 KOG0108 mRNA cleavage and poly 98.8 5.8E-09 1.3E-13 114.3 7.4 69 374-442 19-87 (435)
114 smart00361 RRM_1 RNA recogniti 98.8 1.6E-08 3.4E-13 83.4 7.2 61 210-270 2-69 (70)
115 KOG4210 Nuclear localization s 98.8 1.1E-08 2.4E-13 107.2 6.8 168 194-442 86-253 (285)
116 PF13893 RRM_5: RNA recognitio 98.7 4.6E-08 9.9E-13 76.7 8.3 49 390-443 1-49 (56)
117 KOG1365 RNA-binding protein Fu 98.7 2.2E-08 4.9E-13 103.3 7.7 147 195-345 160-348 (508)
118 PF13893 RRM_5: RNA recognitio 98.7 2.2E-08 4.7E-13 78.6 5.6 56 213-273 1-56 (56)
119 KOG4660 Protein Mei2, essentia 98.7 1.2E-07 2.7E-12 103.2 12.5 73 193-270 72-144 (549)
120 KOG4676 Splicing factor, argin 98.7 6.4E-09 1.4E-13 107.7 1.4 203 198-441 9-214 (479)
121 KOG4307 RNA binding protein RB 98.7 1E-07 2.2E-12 105.3 10.3 151 281-440 316-501 (944)
122 KOG4454 RNA binding protein (R 98.6 8.4E-09 1.8E-13 99.1 1.6 136 195-343 8-147 (267)
123 KOG4661 Hsp27-ERE-TATA-binding 98.6 2.1E-07 4.5E-12 100.4 11.7 80 371-452 403-482 (940)
124 KOG0112 Large RNA-binding prot 98.6 6.3E-08 1.4E-12 110.3 6.7 160 275-456 371-530 (975)
125 KOG0132 RNA polymerase II C-te 98.6 6.2E-08 1.3E-12 108.5 6.5 103 190-298 415-528 (894)
126 KOG4208 Nucleolar RNA-binding 98.6 7.8E-08 1.7E-12 92.3 6.0 78 196-273 49-127 (214)
127 KOG4307 RNA binding protein RB 98.5 4.4E-07 9.5E-12 100.4 10.5 69 374-442 868-936 (944)
128 KOG0128 RNA-binding protein SA 98.5 1.1E-08 2.4E-13 116.0 -2.4 136 194-344 665-800 (881)
129 KOG0129 Predicted RNA-binding 98.5 8.4E-07 1.8E-11 96.1 11.8 145 193-340 256-432 (520)
130 KOG0226 RNA-binding proteins [ 98.4 2.6E-07 5.6E-12 91.1 6.0 139 307-452 128-267 (290)
131 KOG0132 RNA polymerase II C-te 98.4 3.9E-07 8.5E-12 102.3 7.1 67 370-442 418-484 (894)
132 KOG0153 Predicted RNA-binding 98.3 6.7E-07 1.5E-11 92.0 6.4 77 193-275 225-302 (377)
133 KOG0112 Large RNA-binding prot 98.3 3.9E-07 8.4E-12 104.0 5.1 164 191-365 367-534 (975)
134 KOG4849 mRNA cleavage factor I 98.3 5.1E-06 1.1E-10 85.1 11.9 72 374-445 81-154 (498)
135 KOG4454 RNA binding protein (R 98.3 3.3E-07 7.3E-12 88.3 3.0 140 274-440 7-150 (267)
136 KOG0153 Predicted RNA-binding 98.3 1.7E-06 3.8E-11 89.0 8.1 75 372-456 227-302 (377)
137 KOG4206 Spliceosomal protein s 98.3 1.5E-06 3.3E-11 85.0 7.2 68 374-444 10-81 (221)
138 KOG0533 RRM motif-containing p 98.3 6.3E-06 1.4E-10 83.5 11.4 76 373-449 83-158 (243)
139 KOG4209 Splicing factor RNPS1, 98.3 4.8E-06 1E-10 84.6 10.3 78 371-449 99-176 (231)
140 PF04059 RRM_2: RNA recognitio 98.2 5.3E-06 1.2E-10 72.0 8.8 82 374-455 2-85 (97)
141 KOG1995 Conserved Zn-finger pr 98.2 3.5E-06 7.6E-11 87.7 6.9 82 372-455 65-154 (351)
142 KOG0533 RRM motif-containing p 98.0 1E-05 2.2E-10 82.0 7.1 78 195-273 82-159 (243)
143 KOG0226 RNA-binding proteins [ 98.0 5.7E-06 1.2E-10 81.8 4.9 154 197-357 97-265 (290)
144 KOG4209 Splicing factor RNPS1, 98.0 8E-06 1.7E-10 83.0 5.8 82 191-273 96-177 (231)
145 KOG3152 TBP-binding protein, a 98.0 6.6E-06 1.4E-10 81.5 4.2 74 195-268 73-158 (278)
146 PF04059 RRM_2: RNA recognitio 97.9 3.5E-05 7.5E-10 66.9 7.9 68 197-264 2-71 (97)
147 KOG0116 RasGAP SH3 binding pro 97.9 1.2E-05 2.6E-10 88.0 5.6 75 196-271 288-362 (419)
148 KOG4660 Protein Mei2, essentia 97.8 8.7E-06 1.9E-10 89.1 3.2 71 371-446 73-143 (549)
149 PF08777 RRM_3: RNA binding mo 97.8 3E-05 6.6E-10 68.9 5.7 59 374-438 2-60 (105)
150 KOG0151 Predicted splicing reg 97.8 3.1E-05 6.8E-10 86.5 6.6 81 371-455 172-255 (877)
151 KOG0151 Predicted splicing reg 97.8 5.9E-05 1.3E-09 84.4 7.7 79 195-273 173-254 (877)
152 KOG1995 Conserved Zn-finger pr 97.7 3.1E-05 6.7E-10 80.8 5.0 84 194-277 64-155 (351)
153 KOG1548 Transcription elongati 97.7 8.1E-05 1.8E-09 77.0 7.8 76 374-454 135-218 (382)
154 KOG2193 IGF-II mRNA-binding pr 97.7 1E-05 2.2E-10 85.1 0.5 148 277-445 2-149 (584)
155 PF11608 Limkain-b1: Limkain b 97.6 0.00022 4.8E-09 59.0 6.5 70 197-276 3-77 (90)
156 KOG2193 IGF-II mRNA-binding pr 97.4 4.5E-05 9.8E-10 80.3 0.6 146 198-358 3-153 (584)
157 KOG4849 mRNA cleavage factor I 97.4 0.00018 3.8E-09 74.1 4.7 81 192-272 76-158 (498)
158 KOG2314 Translation initiation 97.3 0.00067 1.4E-08 74.4 7.7 68 374-442 59-132 (698)
159 KOG1855 Predicted RNA-binding 97.2 0.0017 3.8E-08 69.1 9.2 70 371-440 229-311 (484)
160 PF11608 Limkain-b1: Limkain b 97.1 0.0015 3.3E-08 54.1 6.8 61 374-444 3-68 (90)
161 PF08777 RRM_3: RNA binding mo 96.9 0.0015 3.1E-08 58.2 5.4 59 197-261 2-60 (105)
162 COG5175 MOT2 Transcriptional r 96.9 0.0012 2.6E-08 67.8 5.4 101 198-298 116-242 (480)
163 KOG3152 TBP-binding protein, a 96.9 0.00059 1.3E-08 68.0 3.0 70 374-443 75-156 (278)
164 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0015 3.3E-08 50.2 4.3 52 374-432 2-53 (53)
165 KOG2416 Acinus (induces apopto 96.7 0.0064 1.4E-07 67.4 9.3 76 192-273 440-519 (718)
166 KOG1999 RNA polymerase II tran 96.5 0.0071 1.5E-07 70.9 8.3 29 236-264 208-236 (1024)
167 KOG4210 Nuclear localization s 96.5 0.0018 3.8E-08 68.3 3.1 79 196-275 184-263 (285)
168 COG5175 MOT2 Transcriptional r 96.4 0.0051 1.1E-07 63.4 5.9 76 373-448 114-198 (480)
169 KOG0115 RNA-binding protein p5 96.3 0.013 2.9E-07 58.7 8.1 95 332-442 5-99 (275)
170 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.013 2.8E-07 45.1 5.4 52 197-255 2-53 (53)
171 KOG2314 Translation initiation 96.1 0.013 2.8E-07 64.7 7.1 75 195-270 57-138 (698)
172 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.019 4.2E-07 50.3 6.7 68 374-443 7-81 (100)
173 KOG0921 Dosage compensation co 95.9 0.033 7.1E-07 65.1 9.3 20 237-256 469-488 (1282)
174 KOG4676 Splicing factor, argin 95.8 0.0077 1.7E-07 63.5 3.9 68 374-442 8-78 (479)
175 KOG0115 RNA-binding protein p5 95.4 0.019 4.1E-07 57.6 4.7 93 249-346 5-97 (275)
176 KOG1996 mRNA splicing factor [ 95.4 0.037 8.1E-07 56.3 6.6 58 387-444 300-358 (378)
177 KOG1855 Predicted RNA-binding 95.3 0.014 3E-07 62.5 3.6 66 195-260 230-308 (484)
178 PF08952 DUF1866: Domain of un 95.3 0.061 1.3E-06 50.1 7.1 46 388-442 51-96 (146)
179 KOG2416 Acinus (induces apopto 95.1 0.013 2.9E-07 64.9 2.9 72 371-448 442-514 (718)
180 KOG2202 U2 snRNP splicing fact 95.1 0.011 2.4E-07 59.4 2.1 61 388-449 83-144 (260)
181 PF08675 RNA_bind: RNA binding 95.0 0.075 1.6E-06 44.3 6.2 56 374-437 9-64 (87)
182 PF10309 DUF2414: Protein of u 94.7 0.1 2.2E-06 41.3 6.1 54 374-435 6-62 (62)
183 PF05172 Nup35_RRM: Nup53/35/4 94.7 0.099 2.1E-06 45.9 6.5 71 196-268 6-83 (100)
184 KOG1996 mRNA splicing factor [ 94.3 0.098 2.1E-06 53.4 6.3 63 210-272 300-363 (378)
185 KOG2202 U2 snRNP splicing fact 94.1 0.021 4.5E-07 57.5 1.2 62 211-273 83-145 (260)
186 KOG2591 c-Mpl binding protein, 93.9 0.14 2.9E-06 56.8 6.9 89 247-343 146-234 (684)
187 KOG0921 Dosage compensation co 93.4 0.31 6.7E-06 57.4 9.0 30 735-772 1245-1274(1282)
188 PF08952 DUF1866: Domain of un 93.0 0.16 3.5E-06 47.3 5.1 71 194-273 25-104 (146)
189 PF08675 RNA_bind: RNA binding 92.9 0.28 6E-06 41.0 5.7 54 199-260 11-64 (87)
190 KOG2318 Uncharacterized conser 92.5 0.52 1.1E-05 52.8 8.9 72 195-266 173-296 (650)
191 PHA03169 hypothetical protein; 92.0 6.6 0.00014 41.9 15.7 47 292-338 334-383 (413)
192 PF04147 Nop14: Nop14-like fam 92.0 0.19 4.1E-06 61.4 5.3 14 208-221 426-439 (840)
193 PF10309 DUF2414: Protein of u 91.8 0.84 1.8E-05 36.2 6.9 53 198-258 7-62 (62)
194 PF07576 BRAP2: BRCA1-associat 91.7 1.1 2.3E-05 40.2 8.4 67 374-442 14-81 (110)
195 KOG2135 Proteins containing th 90.6 0.71 1.5E-05 50.5 7.2 64 374-444 373-437 (526)
196 KOG2591 c-Mpl binding protein, 90.6 0.89 1.9E-05 50.7 8.0 58 372-436 174-233 (684)
197 KOG1924 RhoA GTPase effector D 90.5 0.72 1.6E-05 53.4 7.5 16 245-260 206-221 (1102)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 90.3 0.44 9.6E-06 46.7 5.1 73 195-267 6-84 (176)
199 PRK11634 ATP-dependent RNA hel 89.9 2.9 6.3E-05 49.7 12.4 53 384-445 498-555 (629)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 89.6 0.6 1.3E-05 45.8 5.3 71 373-443 7-83 (176)
201 KOG2038 CAATT-binding transcri 89.5 0.3 6.6E-06 56.3 3.6 15 202-216 961-975 (988)
202 KOG2253 U1 snRNP complex, subu 89.5 0.21 4.5E-06 56.9 2.2 70 194-272 38-107 (668)
203 KOG2068 MOT2 transcription fac 88.4 0.19 4.1E-06 52.8 1.0 76 198-273 79-160 (327)
204 KOG0804 Cytoplasmic Zn-finger 88.3 0.85 1.9E-05 49.7 5.8 68 373-442 74-142 (493)
205 KOG1999 RNA polymerase II tran 88.3 3.8 8.3E-05 49.1 11.4 16 381-396 447-462 (1024)
206 PF10567 Nab6_mRNP_bdg: RNA-re 87.9 12 0.00027 38.9 13.4 60 197-256 16-82 (309)
207 KOG2318 Uncharacterized conser 87.9 1.9 4E-05 48.6 8.1 81 371-451 172-304 (650)
208 PTZ00473 Plasmodium Vir superf 87.6 1.6 3.5E-05 47.0 7.2 27 692-718 348-374 (420)
209 COG5271 MDN1 AAA ATPase contai 86.9 0.93 2E-05 57.1 5.5 22 416-437 4409-4430(4600)
210 KOG4483 Uncharacterized conser 86.8 1 2.3E-05 48.1 5.3 56 195-257 390-446 (528)
211 KOG2253 U1 snRNP complex, subu 86.6 0.53 1.2E-05 53.7 3.2 70 371-449 38-107 (668)
212 PF07576 BRAP2: BRCA1-associat 85.7 3.5 7.6E-05 36.9 7.4 64 199-264 16-80 (110)
213 KOG4285 Mitotic phosphoprotein 85.4 1.6 3.5E-05 45.1 5.7 60 375-442 199-258 (350)
214 KOG2135 Proteins containing th 84.6 0.48 1E-05 51.8 1.6 76 195-277 371-447 (526)
215 COG5271 MDN1 AAA ATPase contai 83.9 0.82 1.8E-05 57.6 3.2 18 324-341 4411-4428(4600)
216 KOG4574 RNA-binding protein (c 82.6 0.87 1.9E-05 53.2 2.7 75 375-457 300-374 (1007)
217 PTZ00473 Plasmodium Vir superf 81.3 2.5 5.4E-05 45.6 5.3 19 388-406 202-220 (420)
218 PF15023 DUF4523: Protein of u 81.0 3.7 8E-05 38.0 5.5 60 374-440 87-150 (166)
219 PF05285 SDA1: SDA1; InterPro 81.0 1.4 2.9E-05 47.8 3.3 8 208-215 190-197 (324)
220 PF04847 Calcipressin: Calcipr 78.9 4.1 8.8E-05 40.2 5.6 51 386-442 8-60 (184)
221 PF04847 Calcipressin: Calcipr 78.5 3.3 7.2E-05 40.8 4.9 59 209-273 8-68 (184)
222 KOG2068 MOT2 transcription fac 78.4 1.1 2.3E-05 47.4 1.5 71 374-444 78-154 (327)
223 PF15023 DUF4523: Protein of u 77.3 3.6 7.9E-05 38.0 4.3 59 195-260 85-147 (166)
224 PF07292 NID: Nmi/IFP 35 domai 77.2 1.1 2.5E-05 38.2 1.1 57 241-297 1-73 (88)
225 KOG0804 Cytoplasmic Zn-finger 74.7 7.1 0.00015 42.9 6.4 68 196-265 74-142 (493)
226 KOG4285 Mitotic phosphoprotein 74.6 4.4 9.5E-05 42.1 4.6 69 199-275 200-269 (350)
227 PF11767 SET_assoc: Histone ly 74.3 13 0.00029 29.9 6.4 49 384-441 11-59 (66)
228 PHA03169 hypothetical protein; 71.1 28 0.0006 37.5 9.5 17 282-300 294-310 (413)
229 PF11767 SET_assoc: Histone ly 71.0 16 0.00034 29.5 6.1 55 207-270 11-65 (66)
230 KOG0262 RNA polymerase I, larg 70.7 6.3 0.00014 48.4 5.3 21 199-219 1444-1464(1640)
231 PF07292 NID: Nmi/IFP 35 domai 69.9 4 8.6E-05 34.9 2.6 70 324-395 1-74 (88)
232 KOG2141 Protein involved in hi 69.1 4 8.7E-05 47.3 3.2 20 418-437 624-643 (822)
233 KOG2141 Protein involved in hi 67.3 3.8 8.3E-05 47.5 2.6 14 380-393 551-564 (822)
234 PF03880 DbpA: DbpA RNA bindin 66.3 23 0.00051 29.1 6.5 54 384-446 12-70 (74)
235 KOG4574 RNA-binding protein (c 65.6 4.6 9.9E-05 47.6 2.8 76 277-362 299-374 (1007)
236 PF03880 DbpA: DbpA RNA bindin 62.9 14 0.0003 30.5 4.5 59 206-273 11-74 (74)
237 KOG4410 5-formyltetrahydrofola 60.1 15 0.00033 37.7 5.1 57 374-436 331-395 (396)
238 PF03286 Pox_Ag35: Pox virus A 59.3 15 0.00033 36.5 4.7 14 3-16 49-62 (200)
239 PF14111 DUF4283: Domain of un 58.2 14 0.00031 34.8 4.4 84 321-408 55-140 (153)
240 KOG2295 C2H2 Zn-finger protein 57.8 3.3 7.1E-05 46.4 -0.1 71 372-442 230-300 (648)
241 PF04094 DUF390: Protein of un 57.4 3.1E+02 0.0066 32.6 15.1 16 381-396 7-22 (828)
242 KOG0262 RNA polymerase I, larg 56.5 9.6 0.00021 46.9 3.4 9 417-425 1586-1594(1640)
243 PF02724 CDC45: CDC45-like pro 54.9 8.5 0.00018 45.6 2.7 16 293-308 372-387 (622)
244 PRK10590 ATP-dependent RNA hel 53.7 3.8E+02 0.0083 30.4 22.0 12 290-301 258-269 (456)
245 COG4547 CobT Cobalamin biosynt 49.7 19 0.00042 39.7 4.1 13 196-208 316-328 (620)
246 KOG2266 Chromatin-associated p 49.1 10 0.00022 41.9 1.9 12 233-244 241-252 (594)
247 PF02724 CDC45: CDC45-like pro 48.9 9.8 0.00021 45.1 1.9 11 291-301 337-347 (622)
248 COG1512 Beta-propeller domains 48.4 15 0.00033 38.5 3.0 14 763-776 258-271 (271)
249 KOG2393 Transcription initiati 47.8 18 0.00038 40.9 3.5 21 199-219 476-496 (555)
250 COG4371 Predicted membrane pro 47.4 28 0.0006 35.3 4.5 8 689-696 48-55 (334)
251 COG5638 Uncharacterized conser 44.4 50 0.0011 35.9 6.0 79 371-449 144-292 (622)
252 PF02714 DUF221: Domain of unk 43.4 30 0.00066 37.3 4.6 56 241-298 1-56 (325)
253 KOG2295 C2H2 Zn-finger protein 43.2 4 8.6E-05 45.8 -2.3 70 194-263 229-298 (648)
254 KOG2393 Transcription initiati 42.0 18 0.00039 40.8 2.5 20 280-299 477-496 (555)
255 COG5638 Uncharacterized conser 41.0 49 0.0011 35.9 5.4 35 197-231 147-186 (622)
256 PF07530 PRE_C2HC: Associated 37.1 37 0.00079 27.6 3.0 63 211-276 2-65 (68)
257 PF09073 BUD22: BUD22; InterP 35.4 59 0.0013 36.8 5.4 9 427-435 411-419 (432)
258 PF10567 Nab6_mRNP_bdg: RNA-re 35.4 89 0.0019 32.8 6.1 62 372-433 14-82 (309)
259 PF11823 DUF3343: Protein of u 35.4 1.3E+02 0.0028 24.5 6.1 61 239-301 2-63 (73)
260 COG4547 CobT Cobalamin biosynt 35.2 37 0.0008 37.6 3.5 10 262-271 425-434 (620)
261 KOG4410 5-formyltetrahydrofola 35.1 76 0.0016 32.9 5.4 56 197-258 331-394 (396)
262 COG5593 Nucleic-acid-binding p 34.9 28 0.00061 39.2 2.6 19 199-217 801-819 (821)
263 PRK05901 RNA polymerase sigma 34.5 37 0.00081 39.1 3.6 10 321-330 320-329 (509)
264 TIGR00927 2A1904 K+-dependent 33.5 29 0.00063 42.3 2.6 8 198-205 906-913 (1096)
265 PF15513 DUF4651: Domain of un 31.1 89 0.0019 24.8 4.0 19 388-406 9-27 (62)
266 smart00596 PRE_C2HC PRE_C2HC d 30.1 52 0.0011 26.7 2.7 61 211-274 2-63 (69)
267 KOG4365 Uncharacterized conser 29.7 12 0.00025 40.9 -1.3 75 198-273 5-79 (572)
268 KOG2891 Surface glycoprotein [ 29.4 1.7E+02 0.0038 30.1 6.9 34 374-407 150-195 (445)
269 KOG4483 Uncharacterized conser 28.3 86 0.0019 34.2 4.7 53 374-433 392-445 (528)
270 KOG1980 Uncharacterized conser 27.8 28 0.0006 40.2 1.1 10 278-287 528-537 (754)
271 PF06403 Lamprin: Lamprin; In 27.6 56 0.0012 28.1 2.6 22 713-734 60-81 (138)
272 PF03468 XS: XS domain; Inter 27.4 62 0.0013 29.3 3.1 50 198-250 10-68 (116)
273 KOG4019 Calcineurin-mediated s 27.4 34 0.00075 33.2 1.5 73 198-276 12-90 (193)
274 PRK10590 ATP-dependent RNA hel 27.1 1.7E+02 0.0037 33.2 7.5 10 431-440 359-368 (456)
275 COG5193 LHP1 La protein, small 26.7 37 0.00081 37.0 1.7 59 374-432 175-243 (438)
276 KOG4264 Nucleo-cytoplasmic pro 26.3 63 0.0014 36.4 3.4 16 241-256 212-227 (694)
277 KOG1295 Nonsense-mediated deca 26.0 81 0.0018 34.4 4.1 69 196-264 7-78 (376)
278 KOG4008 rRNA processing protei 25.2 34 0.00075 34.5 1.1 32 373-404 40-71 (261)
279 COG4371 Predicted membrane pro 25.2 94 0.002 31.7 4.1 10 713-722 48-57 (334)
280 KOG4019 Calcineurin-mediated s 23.8 53 0.0012 31.9 2.1 65 374-444 11-80 (193)
281 TIGR03636 L23_arch archaeal ri 23.3 2.2E+02 0.0047 23.8 5.3 56 376-434 16-73 (77)
282 KOG0338 ATP-dependent RNA heli 22.8 59 0.0013 36.8 2.4 17 278-294 284-300 (691)
283 PF11823 DUF3343: Protein of u 22.0 2.3E+02 0.005 23.0 5.3 25 322-346 2-26 (73)
284 KOG4213 RNA-binding protein La 21.9 90 0.0019 30.3 3.1 58 196-257 111-169 (205)
285 PF02571 CbiJ: Precorrin-6x re 21.9 4.5E+02 0.0097 27.3 8.7 62 293-359 85-146 (249)
286 PRK14548 50S ribosomal protein 21.8 2.8E+02 0.0061 23.6 5.8 58 198-258 22-81 (84)
287 PF03468 XS: XS domain; Inter 21.6 1.3E+02 0.0029 27.2 4.1 57 374-433 9-75 (116)
288 TIGR01651 CobT cobaltochelatas 21.6 85 0.0018 36.5 3.5 15 196-210 295-309 (600)
289 KOG1295 Nonsense-mediated deca 21.6 87 0.0019 34.1 3.3 69 374-442 8-79 (376)
290 TIGR01651 CobT cobaltochelatas 21.1 72 0.0016 37.1 2.8 10 387-396 542-551 (600)
291 PF14111 DUF4283: Domain of un 21.0 3.3E+02 0.0071 25.3 7.0 95 207-309 28-136 (153)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=342.40 Aligned_cols=246 Identities=33% Similarity=0.565 Sum_probs=230.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee-eccccccCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~-~Gr~i~V~~ 272 (777)
...+.|||+.||.++.+++|.-||.+.|+|.+++|++++.+|.++|||||+|.+++.|+.|++.||++.| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999999987 699999999
Q ss_pred CCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCC
Q 004036 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (777)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (777)
+..+++|||+|||++|++++|.+.|++.+. .|+.|.|.....+..+++|||||+|.++..|..|-+.|-...|.+ .+.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl-wgn 238 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL-WGN 238 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee-cCC
Confidence 999999999999999999999999999976 788999999888899999999999999999999998876666644 378
Q ss_pred CccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004036 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 353 ~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
.+.|.||.+...+....+.+.+.|||.||+.+||++.|+++|++||.|..|+.++| ||||+|.+.++|.+|+
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977 9999999999999999
Q ss_pred HHhCCCeeCCCcceEEE
Q 004036 433 KSINNAELGEGDNKAKV 449 (777)
Q Consensus 433 ~~l~g~~~~g~~~~~~v 449 (777)
+.|||+.|.|..+.|++
T Consensus 311 ~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTL 327 (506)
T ss_pred HHhcCceecCceEEEEe
Confidence 99999999985544433
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.1e-38 Score=351.77 Aligned_cols=248 Identities=30% Similarity=0.535 Sum_probs=217.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee-ccccccCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~-Gr~i~V~~a 273 (777)
..++|||+|||+++++++|+++|.+||.|..|+|+++ .+++++|||||+|.+.++|++||+.||+..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4688999999999999999999999999999999999 78999999999999999999999999999885 899999999
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...++|||+|||+.+++++|.++|.+++. .++.+.++......+++++||||+|.+.++|..|++.|+...+.+ .++.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l-~Gr~ 213 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHV 213 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe-cCce
Confidence 99999999999999999999999999864 244444444434567889999999999999999999887654433 3788
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~--G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A 431 (777)
|.|.|+.+........+...++|||+||++.+++++|+++|++| |.|+.|.+++ +||||+|.+.++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 99999988766666666677899999999999999999999999 9999998874 4999999999999999
Q ss_pred HHHhCCCeeCCCcceEEEEEeecCCC
Q 004036 432 AKSINNAELGEGDNKAKVRARLSRPL 457 (777)
Q Consensus 432 ~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (777)
|+.||+..|.+ ..|.+.+++|.
T Consensus 286 i~~lnG~~i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 286 MDELNGKELEG----SEIEVTLAKPV 307 (578)
T ss_pred HHHhCCCEECC----EEEEEEEccCC
Confidence 99999999987 45555666654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.8e-38 Score=346.34 Aligned_cols=243 Identities=23% Similarity=0.445 Sum_probs=213.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC-
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~- 274 (777)
..+|||+|||..+++++|+++|..||+|..|+|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -----CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceecc
Q 004036 275 -----DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (777)
Q Consensus 275 -----~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (777)
...+|||+|||..+++++|..+|.++| .|..+.++.+. .++.+++||||+|.+.++|..|++.|++..+. +
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-g 158 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-G 158 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-C
Confidence 345899999999999999999999999 78888888763 46788999999999999999999999987653 2
Q ss_pred CCCCccccccCCCCCCCc--------------------------------------------------------------
Q 004036 350 VDRPAKVSFADSFIDPGD-------------------------------------------------------------- 367 (777)
Q Consensus 350 ~~~~i~v~~a~~~~~~~~-------------------------------------------------------------- 367 (777)
...++.|.|+........
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 345666666532220000
Q ss_pred -------------------------ccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEe
Q 004036 368 -------------------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422 (777)
Q Consensus 368 -------------------------~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F 422 (777)
.......+|||+|||..+++++|+++|++||.|..|+|+++..++.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0001123699999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhCCCeeCC
Q 004036 423 DTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 423 ~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|.+||..|||..|.|
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCHHHHHHHHHHhCCCEECC
Confidence 99999999999999999987
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.7e-34 Score=331.10 Aligned_cols=236 Identities=25% Similarity=0.477 Sum_probs=211.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC--
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD-- 275 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~-- 275 (777)
+|||+|||.++|+++|.++|.+||.|+.|+|+++..+++++|||||+|.+.++|++||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999988742
Q ss_pred ------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceecc
Q 004036 276 ------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (777)
Q Consensus 276 ------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (777)
..+|||+||+.++++++|+++|+.|| .|..|+++.+ .+++++|||||+|.+.++|.+|+..|++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G--~i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFG--NILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcC--CcceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 35799999999999999999999999 7888998876 4677899999999999999999999998766
Q ss_pred CCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHH
Q 004036 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (777)
Q Consensus 350 ~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~ 429 (777)
.++.+.|.................++|||+||+..+|+++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~ 233 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAA 233 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHH
Confidence 477777765544333322233445789999999999999999999999999999999884 6889999999999999999
Q ss_pred HHHHHhCCCeeC
Q 004036 430 TCAKSINNAELG 441 (777)
Q Consensus 430 ~A~~~l~g~~~~ 441 (777)
+|++.|||..|.
T Consensus 234 ~Av~~l~g~~i~ 245 (562)
T TIGR01628 234 KAVEEMNGKKIG 245 (562)
T ss_pred HHHHHhCCcEec
Confidence 999999999997
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=275.12 Aligned_cols=245 Identities=25% Similarity=0.453 Sum_probs=219.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
..++|.|.-||..+|+++|+.+|...|+|+.|++++|+.+|++.||+||.|.++++|++|+..||+..+..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC------CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceec
Q 004036 275 DS------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (777)
Q Consensus 275 ~~------~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~ 348 (777)
++ ..|||.+||+.+|..+|..+|.+|| .|...+|+.+ ..++.++|.+||.|....+|..|++.||+..- .
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~ 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFG--RIITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-S 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhh--hhhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCC-C
Confidence 65 4799999999999999999999999 6777777766 46799999999999999999999999998764 4
Q ss_pred cCCCCccccccCCCCCCCc----------------------------------------------------------ccc
Q 004036 349 GVDRPAKVSFADSFIDPGD----------------------------------------------------------EIM 370 (777)
Q Consensus 349 ~~~~~i~v~~a~~~~~~~~----------------------------------------------------------~~~ 370 (777)
+...+|.|.|++....... ...
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence 4577888888765432100 000
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
...+||||-||..++.+.-|+++|..||.|.+|+|+++..|.+.|||+||++.+-++|..||..|||..+.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 1237999999999999999999999999999999999999999999999999999999999999999999863
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.7e-32 Score=316.52 Aligned_cols=244 Identities=23% Similarity=0.432 Sum_probs=211.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC-
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS- 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a- 273 (777)
...+|||+|||.++++++|+++|+.||.|..|+|+.+. +++++|||||+|.+.++|.+|+..||+..+.++.|.|...
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 34579999999999999999999999999999999874 6889999999999999999999999999999999988543
Q ss_pred ----------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcC
Q 004036 274 ----------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (777)
Q Consensus 274 ----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (777)
...++|||+||+..+|+++|+++|..|| .|..+.++.+ .++.++|||||+|.+.++|.+|++.|++
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 2235799999999999999999999999 7889998877 3678899999999999999999999998
Q ss_pred Cceec-cCCCCccccccCCCCCCC-------------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecC
Q 004036 344 RDVLF-GVDRPAKVSFADSFIDPG-------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409 (777)
Q Consensus 344 ~~i~~-~~~~~i~v~~a~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~ 409 (777)
..+.. ..+..+.|.++....... ........+|||+||+..+++++|+++|++||.|+.|+|+.+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d- 320 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD- 320 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-
Confidence 87721 115667776664433221 011234578999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 410 ~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
.++.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 68999999999999999999999999999998733
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=282.42 Aligned_cols=233 Identities=27% Similarity=0.469 Sum_probs=206.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
..||||++||+.++.++|.++|+.+|+|..|.+++++.++.++||+||+|.=.++++.|++.+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999987611
Q ss_pred --------------------------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcce
Q 004036 276 --------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323 (777)
Q Consensus 276 --------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~ 323 (777)
.-.|+|.||||.|.+.+|+.+|+.|| .|..|.|.+. ..++..||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G--~V~Ei~IP~k--~dgklcGF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG--KVVEIVIPRK--KDGKLCGF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc--eEEEEEcccC--CCCCccce
Confidence 24689999999999999999999999 8999999844 45555699
Q ss_pred EEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCC---C---------------------C--------------
Q 004036 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI---D---------------------P-------------- 365 (777)
Q Consensus 324 afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~---~---------------------~-------------- 365 (777)
|||+|....+|..|++.+|++.| .++++-|.||-... . .
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~ 237 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKI---DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEE 237 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCcee---cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccc
Confidence 99999999999999999999998 69999999962211 0 0
Q ss_pred -----C--c----------------------------------------ccccccceeecCCCCCCCCHHHHHHHhhccC
Q 004036 366 -----G--D----------------------------------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (777)
Q Consensus 366 -----~--~----------------------------------------~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G 398 (777)
. + .......+|||.|||+++|++.|..+|++||
T Consensus 238 d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG 317 (678)
T KOG0127|consen 238 DSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG 317 (678)
T ss_pred cccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc
Confidence 0 0 0000126899999999999999999999999
Q ss_pred CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 004036 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (777)
Q Consensus 399 ~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l 435 (777)
.|..+.|+.++.|+.++|.|||.|.+..+|+.||...
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999966
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=7.7e-31 Score=298.44 Aligned_cols=239 Identities=25% Similarity=0.427 Sum_probs=203.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
....+|||+|||..+++++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 446789999999999999999999999999999999999999999999999999999999997 8999999999988654
Q ss_pred C------------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHH
Q 004036 274 Q------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (777)
Q Consensus 274 ~------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~ 335 (777)
. ..++|||+|||..+|+++|+++|.+|| .|..|.|+.+. .++.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 1 136899999999999999999999999 78899988873 56788999999999999999
Q ss_pred HHHHHHcCCceeccCCCCccccccCCCCCC--------------------------------------------------
Q 004036 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDP-------------------------------------------------- 365 (777)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~-------------------------------------------------- 365 (777)
+|++.|++..+ .+++|.|.|+......
T Consensus 243 ~A~~~l~g~~i---~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01622 243 EALEVMNGFEL---AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI 319 (457)
T ss_pred HHHHhcCCcEE---CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchh
Confidence 99999999666 5788888884321000
Q ss_pred -----------------------------------CcccccccceeecCCCCCCCC----------HHHHHHHhhccCCe
Q 004036 366 -----------------------------------GDEIMAQVKTVFVDGLPASWD----------EDRVRELLKNYGEI 400 (777)
Q Consensus 366 -----------------------------------~~~~~~~~~~l~V~nLp~~~t----------~~dL~~~F~~~G~v 400 (777)
.......+++|+|.||....+ .+||++.|.+||.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v 399 (457)
T TIGR01622 320 ALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGV 399 (457)
T ss_pred hhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCe
Confidence 000113457888999965543 36899999999999
Q ss_pred EEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 401 ~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
+.|.|... ...|++||+|.++++|.+|++.|||+.|.|.
T Consensus 400 ~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr 438 (457)
T TIGR01622 400 VHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGK 438 (457)
T ss_pred eEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCe
Confidence 99998743 3578999999999999999999999999973
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.7e-30 Score=295.06 Aligned_cols=230 Identities=22% Similarity=0.236 Sum_probs=191.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc--cCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l--~~~~~~Gr~i~V~~a 273 (777)
+.+|||+|||+.+++++|+++|.+||.|..|.|+++ ++||||+|.+.++|++|++.| ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 467999999999999999999999999999999853 579999999999999999975 678999999999765
Q ss_pred CCC------------------CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHH
Q 004036 274 QDS------------------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (777)
Q Consensus 274 ~~~------------------~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~ 335 (777)
... .+|+|.||+..+|+++|+++|+.|| .|..|.++++.. .++|||+|.+.++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G--~V~~v~i~~~~~-----~~~afVef~~~~~A~ 148 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG--KVLRIVTFTKNN-----VFQALVEFESVNSAQ 148 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC--CEEEEEEEecCC-----ceEEEEEECCHHHHH
Confidence 211 2589999999999999999999999 799998876531 468999999999999
Q ss_pred HHHHHHcCCceeccCCCCccccccCCCC---------C-----------C-----------C------------------
Q 004036 336 DAFKRLQKRDVLFGVDRPAKVSFADSFI---------D-----------P-----------G------------------ 366 (777)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~i~v~~a~~~~---------~-----------~-----------~------------------ 366 (777)
+|++.||+..+..+ ++.++|.|+.... . . .
T Consensus 149 ~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 149 HAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999887432 3445555433100 0 0 0
Q ss_pred -----------------------------------------cccccccceeecCCCCC-CCCHHHHHHHhhccCCeEEEE
Q 004036 367 -----------------------------------------DEIMAQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIE 404 (777)
Q Consensus 367 -----------------------------------------~~~~~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~v~~v~ 404 (777)
.....+.++|||+||++ .+|+++|+++|+.||.|..|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 00012457999999998 699999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 405 LARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 405 i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
|+.+. +|||||+|.+.++|..||..|||..|.|..
T Consensus 308 i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 308 FMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred EEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 99863 689999999999999999999999998733
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=2.2e-30 Score=298.82 Aligned_cols=239 Identities=23% Similarity=0.358 Sum_probs=193.4
Q ss_pred hcCCcceEEEeCCCCCCCHHHHHHHhhccC------------ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc
Q 004036 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVG------------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (777)
Q Consensus 192 ~~~~~~~lfV~nLp~~~te~~L~~~f~~~G------------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (777)
......+|||+|||+.+|+++|.++|.+++ .|..+.+ +..++||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345577899999999999999999999862 2333333 3468999999999999999995 99
Q ss_pred CCeeeccccccCCC-----------------------------------CCCCCcccccccccccHHHHHHHHhhcCCcc
Q 004036 260 NPVINGKQCGVTPS-----------------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304 (777)
Q Consensus 260 ~~~~~Gr~i~V~~a-----------------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~ 304 (777)
+..|.|+.|.|... ...++|||+|||..+++++|+++|+.|| .
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~ 321 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG--D 321 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 99999999988521 1135799999999999999999999999 7
Q ss_pred eeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCCCC------------------
Q 004036 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG------------------ 366 (777)
Q Consensus 305 i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~------------------ 366 (777)
|..+.|+.+ ..++.++|||||+|.+.+.|..|+..|++..+ .++.|.|.++.......
T Consensus 322 i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 322 LKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred eeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 888888877 36788999999999999999999999999887 47778887764221110
Q ss_pred -----cccccccceeecCCCCCCC----------CHHHHHHHhhccCCeEEEEEeecC---CCCCcccEEEEEeccHHHH
Q 004036 367 -----DEIMAQVKTVFVDGLPASW----------DEDRVRELLKNYGEITKIELARNM---PSAKRKDFGFVTFDTHDAA 428 (777)
Q Consensus 367 -----~~~~~~~~~l~V~nLp~~~----------t~~dL~~~F~~~G~v~~v~i~~~~---~~g~~kg~afV~F~~~~~A 428 (777)
.....++++|+|.||.... ..++|+++|.+||.|+.|.|++.. .++...|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 0001246789999996421 236899999999999999998753 3356689999999999999
Q ss_pred HHHHHHhCCCeeCCC
Q 004036 429 VTCAKSINNAELGEG 443 (777)
Q Consensus 429 ~~A~~~l~g~~~~g~ 443 (777)
++||..|||..|.|.
T Consensus 478 ~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 478 EKAMEGMNGRKFNDR 492 (509)
T ss_pred HHHHHHcCCCEECCe
Confidence 999999999999873
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=9.3e-30 Score=289.14 Aligned_cols=244 Identities=18% Similarity=0.287 Sum_probs=198.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc--ccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK--QCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr--~i~V~~a 273 (777)
-.+|||.||++.+++++|+++|..||.|+.|.|+++.. .++|||+|.+.++|.+|++.||+..|.+. .|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 34699999999999999999999999999999987532 46899999999999999999999988542 2222111
Q ss_pred --------------------------------------------------------------------------------
Q 004036 274 -------------------------------------------------------------------------------- 273 (777)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (777)
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence
Q ss_pred ---------------------CCCCCcccccccc-cccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecCh
Q 004036 274 ---------------------QDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331 (777)
Q Consensus 274 ---------------------~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~ 331 (777)
...++|||+||++ .+|+++|+++|+.|| .|..|+|+.+. ++||||+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~------~g~afV~f~~~ 323 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK------KETALIEMADP 323 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC------CCEEEEEECCH
Confidence 1235799999997 699999999999999 89999998763 79999999999
Q ss_pred hHHHHHHHHHcCCceeccCCCCccccccCCCCCCC--------------------------------cccccccceeecC
Q 004036 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG--------------------------------DEIMAQVKTVFVD 379 (777)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~ 379 (777)
++|..|+..||+..+ .+++|.|.++....... ..+..++.+|||+
T Consensus 324 ~~A~~Ai~~lng~~l---~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~ 400 (481)
T TIGR01649 324 YQAQLALTHLNGVKL---FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLS 400 (481)
T ss_pred HHHHHHHHHhCCCEE---CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEe
Confidence 999999999999877 58888888764321000 0012345789999
Q ss_pred CCCCCCCHHHHHHHhhccCC--eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc--ceEEEEEeecC
Q 004036 380 GLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD--NKAKVRARLSR 455 (777)
Q Consensus 380 nLp~~~t~~dL~~~F~~~G~--v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~--~~~~v~~~~~~ 455 (777)
|||..+++++|+++|+.||. |..|+|.... +..+++|||+|.+.++|.+||..|||..|.+.. ....|++.+++
T Consensus 401 NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 401 NIPLSVSEEDLKELFAENGVHKVKKFKFFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cCCCCCCHHHHHHHHHhcCCccceEEEEecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 99999999999999999998 8888886543 235789999999999999999999999998753 33456667765
Q ss_pred C
Q 004036 456 P 456 (777)
Q Consensus 456 ~ 456 (777)
+
T Consensus 479 ~ 479 (481)
T TIGR01649 479 S 479 (481)
T ss_pred C
Confidence 4
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=266.61 Aligned_cols=247 Identities=26% Similarity=0.504 Sum_probs=218.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC-eeec--cccccCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VING--KQCGVTP 272 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~G--r~i~V~~ 272 (777)
..+|||+.||..|+|.+|+++|++||.|.+|.|++|+.++.++|+|||.|.+.++|.+|+.+||+. +|.| ..|.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 345999999999999999999999999999999999999999999999999999999999999876 5656 4556666
Q ss_pred CC-------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCc
Q 004036 273 SQ-------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (777)
Q Consensus 273 a~-------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~ 345 (777)
+. ..++|||+-|++.+|+.+|+++|.+|| .|.+|.|+++ ..+.++||+||.|.+.+.|..|++.||+..
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFG--HIEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhC--ccchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 52 357899999999999999999999999 8999999988 578899999999999999999999999999
Q ss_pred eeccCCCCccccccCCCCCC------------------------------------------------------------
Q 004036 346 VLFGVDRPAKVSFADSFIDP------------------------------------------------------------ 365 (777)
Q Consensus 346 i~~~~~~~i~v~~a~~~~~~------------------------------------------------------------ 365 (777)
.+.+...++.|.|++.....
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 99999999999996544310
Q ss_pred --------------------------C--------------c--------------------------------------
Q 004036 366 --------------------------G--------------D-------------------------------------- 367 (777)
Q Consensus 366 --------------------------~--------------~-------------------------------------- 367 (777)
. .
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 0 0
Q ss_pred ---------------------------------------------------------------------ccccccceeec
Q 004036 368 ---------------------------------------------------------------------EIMAQVKTVFV 378 (777)
Q Consensus 368 ---------------------------------------------------------------------~~~~~~~~l~V 378 (777)
........|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 00000148999
Q ss_pred CCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004036 379 DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 379 ~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
.+||.+.-+.+|...|..||.|+..++..++.|+.++.|+||.|++..+|..||..|||.+|+....+
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krlk 497 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLK 497 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999865433
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.5e-28 Score=261.32 Aligned_cols=170 Identities=22% Similarity=0.396 Sum_probs=150.6
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...++|||+|||+++|+++|+++|..+| .|..|+|+.+. .++++++||||+|.+.++|.+|++.|++..+ .+++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G--~V~~v~i~~d~-~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr~ 178 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIG--PINTCRIMRDY-KTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNKR 178 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecC-CCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCce
Confidence 4567999999999999999999999999 79999998884 6889999999999999999999999999877 5889
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
|+|.++...... ...++|||+|||..+|+++|+++|.+||.|+.|.|+++..+++++|||||+|.+.++|++||+
T Consensus 179 i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 179 LKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 999988653221 234789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCCcceEEEEEeec
Q 004036 434 SINNAELGEGDNKAKVRARLS 454 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~ 454 (777)
.||+..|.+....+.|.++..
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HhCCCccCCCceeEEEEECCc
Confidence 999999987665566655443
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.2e-28 Score=234.12 Aligned_cols=219 Identities=24% Similarity=0.478 Sum_probs=179.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
..+||||+||..++|++-|..||.+.|.|+.++|+.+... |...+ ..+.+-+.. ..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~--------v~wa~---------------~p~nQsk~t-~~ 60 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK--------VNWAT---------------APGNQSKPT-SN 60 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc--------ccccc---------------CcccCCCCc-cc
Confidence 4578999999999999999999999999999999876210 00000 001000000 01
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
..-.+||+.|...++-++|++.|.+|| .|.+++|++| .+|++++||+||.|.+.++|+.|++.|++.=+ ..+.|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFG--evS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~I 134 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFG--EVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTI 134 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhcccc--ccccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCeee---cccee
Confidence 123689999999999999999999999 8999999999 58999999999999999999999999999766 68999
Q ss_pred cccccCCCCCCC-----------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEec
Q 004036 355 KVSFADSFIDPG-----------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (777)
Q Consensus 355 ~v~~a~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~ 423 (777)
+.+|+..+.... .......++|||+||+..+++++|++.|..||.|..|+|.++ +|||||.|+
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999987655221 122334589999999999999999999999999999999988 789999999
Q ss_pred cHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 424 THDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
+.++|..||..|||.+|.|+.++|.+
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEec
Confidence 99999999999999999985544443
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=2.6e-27 Score=266.64 Aligned_cols=158 Identities=18% Similarity=0.434 Sum_probs=141.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|||+||++.+++++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred C-----------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHH
Q 004036 274 Q-----------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMD 336 (777)
Q Consensus 274 ~-----------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~ 336 (777)
. ..++|||+||+..+++++|+++|+.|| .|..++|+++. .++.++|||||+|.+.++|.+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~-~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecC-CCCCcCCeEEEEECCHHHHHH
Confidence 2 236899999999999999999999999 89999999874 578899999999999999999
Q ss_pred HHHHHcCCceeccCCCCcccc
Q 004036 337 AFKRLQKRDVLFGVDRPAKVS 357 (777)
Q Consensus 337 Al~~l~~~~i~~~~~~~i~v~ 357 (777)
|+..||+..+ .|+.|+|.
T Consensus 262 AI~amNg~el---gGr~LrV~ 279 (612)
T TIGR01645 262 AIASMNLFDL---GGQYLRVG 279 (612)
T ss_pred HHHHhCCCee---CCeEEEEE
Confidence 9999997755 34444443
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-25 Score=239.78 Aligned_cols=229 Identities=24% Similarity=0.468 Sum_probs=204.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC-C
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD-S 276 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~-~ 276 (777)
.|||+ +++|+..|.++|+.+|+|+.|+++++. | +.|||||.|.++++|.+||..+|...+.|+.|+|.|+.. .
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 48888 999999999999999999999999998 6 999999999999999999999999999999999999854 4
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
..|||.||+..++...|.++|+.|| +|+.|+++.+.+. ++|| ||+|.+.+.|.+|+..+|+..+ .++++.|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g--~ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki~v 147 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFG--NILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGMLL---NGKKIYV 147 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhc--CeeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCccc---CCCeeEE
Confidence 5599999999999999999999999 9999999988543 8999 9999999999999999998776 5778877
Q ss_pred cccCCCCCCC---cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 357 SFADSFIDPG---DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 357 ~~a~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.......... ......-..++|.|++..+++..|..+|..+|.|..+.|+.+. .+++++|+||.|.++++|..|+.
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHH
Confidence 6654433221 1133455789999999999999999999999999999999886 45699999999999999999999
Q ss_pred HhCCCeeCC
Q 004036 434 SINNAELGE 442 (777)
Q Consensus 434 ~l~g~~~~g 442 (777)
.||+..+.+
T Consensus 227 ~l~~~~~~~ 235 (369)
T KOG0123|consen 227 TLNGKIFGD 235 (369)
T ss_pred hccCCcCCc
Confidence 999999974
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=2.6e-25 Score=239.14 Aligned_cols=164 Identities=24% Similarity=0.444 Sum_probs=149.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|||+|||+++|+++|+++|..||.|+.|+|+.+..++++++||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCcee
Q 004036 274 Q------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (777)
Q Consensus 274 ~------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (777)
. ..++|||.|||+.+|+++|+++|.+|| .|..|.|+.+ ..++++++||||+|.+.++|.+|++.|++..+.
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4 356899999999999999999999999 7889999877 468889999999999999999999999987653
Q ss_pred ccCCCCccccccCC
Q 004036 348 FGVDRPAKVSFADS 361 (777)
Q Consensus 348 ~~~~~~i~v~~a~~ 361 (777)
+..++|.|.++..
T Consensus 262 -g~~~~l~V~~a~~ 274 (346)
T TIGR01659 262 -GGSQPLTVRLAEE 274 (346)
T ss_pred -CCceeEEEEECCc
Confidence 2356788887765
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3e-24 Score=231.97 Aligned_cols=234 Identities=25% Similarity=0.475 Sum_probs=203.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC----
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ---- 274 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~---- 274 (777)
|||.||+..++..+|..+|+.||.|++|++.++.+ | ++|| ||+|.+.+.|++|+..||+..+.++.|.|....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999854 4 9999 999999999999999999999999999985542
Q ss_pred ----------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCC
Q 004036 275 ----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (777)
Q Consensus 275 ----------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (777)
....+++.|++.+.++..|..+|..+| .|..+.++.+ ..+++++|+||+|.+.+.|..|+..|++.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccC--cceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccCC
Confidence 235789999999999999999999999 8999999877 46678999999999999999999999988
Q ss_pred ceeccCCCCccccccCCCCCC-------------CcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC
Q 004036 345 DVLFGVDRPAKVSFADSFIDP-------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411 (777)
Q Consensus 345 ~i~~~~~~~i~v~~a~~~~~~-------------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~ 411 (777)
.+. +..+.|..+...... .........+|||.||...++.+.|+.+|+.||.|..++|+.+. .
T Consensus 232 ~~~---~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~ 307 (369)
T KOG0123|consen 232 IFG---DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-N 307 (369)
T ss_pred cCC---ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-C
Confidence 763 444555444332211 11223456789999999999999999999999999999999884 6
Q ss_pred CCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 412 g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
++++||+||+|.+.++|.+|+..+|+..+.+.
T Consensus 308 g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k 339 (369)
T KOG0123|consen 308 GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK 339 (369)
T ss_pred CCccceEEEEcCCHHHHHHHHHhhChhhhcCC
Confidence 89999999999999999999999999999863
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.4e-24 Score=224.41 Aligned_cols=236 Identities=23% Similarity=0.399 Sum_probs=187.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
...|+|.||||.+...+|+.+|+.||.|..|.|.+... ++..|||||+|....+|..||+.+|+..|.|+.|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67799999999999999999999999999999997655 55569999999999999999999999999999999988700
Q ss_pred --------------------------------------------------------------------------------
Q 004036 276 -------------------------------------------------------------------------------- 275 (777)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (777)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred ----------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHH
Q 004036 276 ----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (777)
Q Consensus 276 ----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (777)
..+|||.|||+.+|++.|.++|++|| .|..+.|+.+ ..|++++|+|||.|.+..+|..||.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeEEEEec-cCCCCcccceEEEeccHHHHHHHHH
Confidence 05799999999999999999999999 6777777777 5799999999999999999999998
Q ss_pred HHc---CCceeccCCCCccccccCCCCCC---------------------------------------------------
Q 004036 340 RLQ---KRDVLFGVDRPAKVSFADSFIDP--------------------------------------------------- 365 (777)
Q Consensus 340 ~l~---~~~i~~~~~~~i~v~~a~~~~~~--------------------------------------------------- 365 (777)
... ...-++..++.++|..+-.....
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 662 22212235777777664211100
Q ss_pred -----CcccccccceeecCCCCCCCCHHHHHHHhhc----c-CCeE-EEEEeec---CCCCCcccEEEEEeccHHHHHHH
Q 004036 366 -----GDEIMAQVKTVFVDGLPASWDEDRVRELLKN----Y-GEIT-KIELARN---MPSAKRKDFGFVTFDTHDAAVTC 431 (777)
Q Consensus 366 -----~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~----~-G~v~-~v~i~~~---~~~g~~kg~afV~F~~~~~A~~A 431 (777)
...+....++|.|.|||..++...|..++.. | +.|. .|+.+.. ...+.+.||+||.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 1112223468999999999999999888754 2 2332 2233222 22467899999999999999999
Q ss_pred HHHh
Q 004036 432 AKSI 435 (777)
Q Consensus 432 ~~~l 435 (777)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 8866
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=4.2e-23 Score=232.83 Aligned_cols=171 Identities=19% Similarity=0.399 Sum_probs=146.4
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcc
Q 004036 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (777)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~ 355 (777)
.++|||+||++.+++++|+++|.+|| .|..|.++.+ ..+++++|||||+|.+.++|..|++.|++..+ .++.|+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG--~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---~GR~Ik 180 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIK 180 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC--CEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---ecceee
Confidence 46899999999999999999999999 7999999887 46789999999999999999999999998777 588888
Q ss_pred ccccCCCCCCCc------ccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHH
Q 004036 356 VSFADSFIDPGD------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (777)
Q Consensus 356 v~~a~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~ 429 (777)
|.+......... ......++|||+||+..+++++|+++|+.||.|..|.|+++..+++++|||||+|.+.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 887543321111 11123479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeCCCcceEEEEEeec
Q 004036 430 TCAKSINNAELGEGDNKAKVRARLS 454 (777)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (777)
+||..||+..|+| ..+.|.....
T Consensus 261 kAI~amNg~elgG--r~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLFDLGG--QYLRVGKCVT 283 (612)
T ss_pred HHHHHhCCCeeCC--eEEEEEecCC
Confidence 9999999999987 3344444443
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=9.8e-23 Score=223.33 Aligned_cols=246 Identities=20% Similarity=0.304 Sum_probs=197.3
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
.+..+.|+|+|||..+..+.|..+|..||.|..|.|.. .| ..|+|.|.++.+|..|+..|....+....+.+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc---cc---ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 34457799999999999999999999999999995542 12 2499999999999999999886555444443322
Q ss_pred C--------------------------------------------------------CCCCCcccccccccccHHHHHHH
Q 004036 273 S--------------------------------------------------------QDSDTLFLGNICKTWTKEALKEK 296 (777)
Q Consensus 273 a--------------------------------------------------------~~~~~l~V~nLp~~~te~~L~~~ 296 (777)
+ ...++|||.||++..|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 2 00134999999999999999999
Q ss_pred HhhcCCcceeEeEEeecCC--CCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCCC----Ccccc
Q 004036 297 LKHYGVDNVEDLTLVEDSN--NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----GDEIM 370 (777)
Q Consensus 297 F~~~G~~~i~~i~l~~d~~--~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~----~~~~~ 370 (777)
|.+.| .|..+.|..... +.-.+.|||||+|.+.++|..|++.|+++.+ .++.+.|.++...... .....
T Consensus 536 F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~~k~~~~~gK~~~~k 610 (725)
T KOG0110|consen 536 FSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISENKPASTVGKKKSKK 610 (725)
T ss_pred HHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEeccCccccccccccccc
Confidence 99999 666666654432 2445679999999999999999999998877 6889988888722111 11122
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
...++|+|.|||+..+..+|+.+|..||.|..|+|+.....+..+|||||+|-+..+|..|+.+|..+.|.|+.+.+.+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 2357899999999999999999999999999999998866677899999999999999999999999999986655444
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.8e-23 Score=213.70 Aligned_cols=175 Identities=26% Similarity=0.499 Sum_probs=153.7
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcc
Q 004036 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (777)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~ 355 (777)
.-+|||+.||..|++.+|+++|++|| .|.+|.|++| +.++.++|||||.|.+.++|.+|+.+||+...+.+...++.
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg--~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYG--NVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhC--ceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34799999999999999999999999 8999999999 57889999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 004036 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (777)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l 435 (777)
|.+++.....- ...++|||+-|+..+|+.+|+.+|.+||.|++|.|+++. .+.++|||||+|.+.+-|..||+.|
T Consensus 111 vk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 111 VKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred ecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhh
Confidence 99998765442 223899999999999999999999999999999999995 6899999999999999999999999
Q ss_pred CCCeeCCCcceEEEEEeecCCCCC
Q 004036 436 NNAELGEGDNKAKVRARLSRPLQR 459 (777)
Q Consensus 436 ~g~~~~g~~~~~~v~~~~~~~~~~ 459 (777)
||..-..+ ....+.+.|+.+...
T Consensus 186 ng~~tmeG-cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 186 NGTQTMEG-CSQPLVVKFADTQKD 208 (510)
T ss_pred ccceeecc-CCCceEEEecccCCC
Confidence 99775543 224445555554433
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=1.7e-22 Score=222.09 Aligned_cols=166 Identities=22% Similarity=0.411 Sum_probs=147.1
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
..++|||+|||..+++++|+++|..|| .|..|+|+.+ ..+++++|||||+|.+.++|.+|+..|++..+ .+++|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIG--EIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccC--CEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeE
Confidence 356899999999999999999999999 8999999988 45788999999999999999999999999776 58899
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004036 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
.|.|+.+.... ...++|||+|||..+++++|+.+|.+||.|..+.|+.+..++.++|||||+|.+.++|+.||..
T Consensus 76 ~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 76 KVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred EEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 99998654432 2347899999999999999999999999999999999988899999999999999999999999
Q ss_pred hCCCeeCCCcceEEEEE
Q 004036 435 INNAELGEGDNKAKVRA 451 (777)
Q Consensus 435 l~g~~~~g~~~~~~v~~ 451 (777)
|||..+.+....+.+..
T Consensus 151 l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKF 167 (352)
T ss_pred hCCCccCCCceeEEEEE
Confidence 99999987554444443
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=2.3e-22 Score=215.16 Aligned_cols=244 Identities=23% Similarity=0.369 Sum_probs=198.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
+..++||+-.|...++..+|.+||+.+|+|..|.|+.+..++.++|.|||+|.+.+....||. |.|..+.|..|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 456789999999999999999999999999999999999999999999999999999999995 9999999999998765
Q ss_pred --------------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhH
Q 004036 274 --------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (777)
Q Consensus 274 --------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~ 333 (777)
.+...|||+||.+++++++|+.+|+.|| .|..|.+..+ ..+|.++||+||+|.+.+.
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLTKD-SETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeeccc-cccccccCcceEEEecHHH
Confidence 1223489999999999999999999999 7888888877 3589999999999999999
Q ss_pred HHHHHHHHcCCceeccCCCCccccccCCCCCC------------------------------------------------
Q 004036 334 AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP------------------------------------------------ 365 (777)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~------------------------------------------------ 365 (777)
|++|+..||+..+ .|+.|+|.........
T Consensus 333 ar~a~e~lngfel---AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 333 ARKALEQLNGFEL---AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHhcccee---cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 9999999999444 4777666542111000
Q ss_pred -------------------Ccccc-------cccceeecCCCCCCCC----------HHHHHHHhhccCCeEEEEEeecC
Q 004036 366 -------------------GDEIM-------AQVKTVFVDGLPASWD----------EDRVRELLKNYGEITKIELARNM 409 (777)
Q Consensus 366 -------------------~~~~~-------~~~~~l~V~nLp~~~t----------~~dL~~~F~~~G~v~~v~i~~~~ 409 (777)
..... .++.|+.|.|+-...| .+||.+.+.+||.|..|.|..+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns 489 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS 489 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC
Confidence 00000 2345666677643222 26889999999999888886552
Q ss_pred CCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 410 ~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
-|+.||.|.+.++|..|+.+|||.+|.|..+..++
T Consensus 490 -----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 490 -----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred -----CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 47999999999999999999999999985544443
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=193.24 Aligned_cols=181 Identities=23% Similarity=0.465 Sum_probs=152.4
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
.+|||+|||.++++++|+.+|++|| +|++|.|+ ++|+||+..+...+..|+..|++.++ .+..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~yg--kVlECDIv---------KNYgFVHiEdktaaedairNLhgYtL---hg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYG--KVLECDIV---------KNYGFVHIEDKTAAEDAIRNLHGYTL---HGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhC--ceEeeeee---------cccceEEeecccccHHHHhhccccee---cceEEEE
Confidence 3799999999999999999999999 89999998 77999999999999999999999988 6888888
Q ss_pred cccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004036 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
..++++. ..+++|||+||...|+.++|+..|.+||.|.+|+|+++ |+||.|+-.++|..||+.||
T Consensus 69 eaSksKs-------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 69 EASKSKS-------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred EeccccC-------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccc
Confidence 8776652 34589999999999999999999999999999999977 99999999999999999999
Q ss_pred CCeeCCCcceEEEEEeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004036 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGR 495 (777)
Q Consensus 437 g~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~g~~rgg~g~~~g~~g~~g~~~~~~~~~~ 495 (777)
|++|.|. .++|++..++-. ...+.+..-+++++| .-|+|...+|....++
T Consensus 134 ~~~~~gk--~m~vq~stsrlr-tapgmgDq~~cyrcG------keghwskEcP~~~~~r 183 (346)
T KOG0109|consen 134 NTEFQGK--RMHVQLSTSRLR-TAPGMGDQSGCYRCG------KEGHWSKECPVDRTGR 183 (346)
T ss_pred ccccccc--eeeeeeeccccc-cCCCCCCHHHheecc------ccccccccCCccCCCc
Confidence 9999974 455555555432 234555556666654 4578888887665443
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.5e-22 Score=192.28 Aligned_cols=154 Identities=23% Similarity=0.561 Sum_probs=145.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC--
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a-- 273 (777)
...|||+.|...++.++|++.|.+||.|.+++|++|.+|++++||+||.|.++++|+.||..||+.=|.+|.|+-.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 667999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhH
Q 004036 274 --------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (777)
Q Consensus 274 --------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~ 333 (777)
.++++|||+||+..+|++.|++.|..|| .|.+|+++++ +||+||.|.+.+.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--PIQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--cceEEEEecc-------cceEEEEecchhh
Confidence 3458999999999999999999999999 8999999998 9999999999999
Q ss_pred HHHHHHHHcCCceeccCCCCccccccCC
Q 004036 334 AMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (777)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~i~v~~a~~ 361 (777)
|..|+-.+|+..| .++.+++.|-+.
T Consensus 213 AahAIv~mNntei---~G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI---GGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCcee---CceEEEEecccc
Confidence 9999999999998 688888888754
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=2e-21 Score=221.22 Aligned_cols=162 Identities=22% Similarity=0.418 Sum_probs=139.7
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...++|||+|||..+++++|+++|.++| .|..|.|+.+ ..+++++|||||+|.+.++|.+||. |++..+ .+++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---~g~~ 159 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG--KVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQML---LGRP 159 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---CCee
Confidence 3456899999999999999999999999 8999999987 4678999999999999999999996 777666 4777
Q ss_pred ccccccCCCCCCC-------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHH
Q 004036 354 AKVSFADSFIDPG-------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426 (777)
Q Consensus 354 i~v~~a~~~~~~~-------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~ 426 (777)
|.|.++....... .......++|||+|||..+++++|+++|.+||.|..|.|+.+..+|+++|||||+|.+.+
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 8777654322111 011122589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeCC
Q 004036 427 AAVTCAKSINNAELGE 442 (777)
Q Consensus 427 ~A~~A~~~l~g~~~~g 442 (777)
+|.+|+..|||..|.|
T Consensus 240 ~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 240 EAKEALEVMNGFELAG 255 (457)
T ss_pred HHHHHHHhcCCcEECC
Confidence 9999999999999986
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.9e-21 Score=192.40 Aligned_cols=146 Identities=18% Similarity=0.460 Sum_probs=134.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC-
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~- 274 (777)
-+.|||+.|.+...++.|+..|..||+|..|.+..|+.|++.+|||||+|.-++.|..|++.+|+.++.|+.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ----------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHH
Q 004036 275 ----------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (777)
Q Consensus 275 ----------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al 338 (777)
.-++|||..+..++++++|+..|+.|| .|..|.|.+.+ ....++||+||+|.+......|+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccC-CCCCccceeeEEeccccchHHHh
Confidence 237899999999999999999999999 89999999884 56788999999999999988888
Q ss_pred HHHcCC
Q 004036 339 KRLQKR 344 (777)
Q Consensus 339 ~~l~~~ 344 (777)
..+|-.
T Consensus 270 asMNlF 275 (544)
T KOG0124|consen 270 ASMNLF 275 (544)
T ss_pred hhcchh
Confidence 876643
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=2.7e-21 Score=218.15 Aligned_cols=191 Identities=23% Similarity=0.372 Sum_probs=158.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCc-eeEEEEee-CCCCCCCcceEEEEecCHHHHHHHHHhccC--Ceeecccccc
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMM-NPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGV 270 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~-v~~v~i~~-d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~Gr~i~V 270 (777)
..++|||+|||+.+++++|.++|.+++. ++.+.++. ....+++++||||+|.+.++|..|+..|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 3578999999999999999999999864 44444432 234567899999999999999999998864 4678999999
Q ss_pred CCCCC-----------CCCcccccccccccHHHHHHHHhhc--CCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHH
Q 004036 271 TPSQD-----------SDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (777)
Q Consensus 271 ~~a~~-----------~~~l~V~nLp~~~te~~L~~~F~~~--G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~A 337 (777)
.++.. .++|||+||++.+++++|+++|++| | .|..|.++ ++||||+|.+.++|.+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G--~I~rV~~~---------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG--KVERVKKI---------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--ceEEEEee---------cCeEEEEeCCHHHHHHH
Confidence 87743 3579999999999999999999999 7 78888765 56999999999999999
Q ss_pred HHHHcCCceeccCCCCccccccCCCCCC-----------------------CcccccccceeecCCCCCCCCHHHHHHHh
Q 004036 338 FKRLQKRDVLFGVDRPAKVSFADSFIDP-----------------------GDEIMAQVKTVFVDGLPASWDEDRVRELL 394 (777)
Q Consensus 338 l~~l~~~~i~~~~~~~i~v~~a~~~~~~-----------------------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F 394 (777)
++.||+..| .++.|.|.|+.+.... .........+++++||++.++++.|.++|
T Consensus 286 i~~lnG~~i---~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f 362 (578)
T TIGR01648 286 MDELNGKEL---EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFP 362 (578)
T ss_pred HHHhCCCEE---CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcc
Confidence 999999887 6899999999764322 01112245789999999999999999999
Q ss_pred hccCC
Q 004036 395 KNYGE 399 (777)
Q Consensus 395 ~~~G~ 399 (777)
..+|.
T Consensus 363 ~~~g~ 367 (578)
T TIGR01648 363 RMPGP 367 (578)
T ss_pred ccCcc
Confidence 98874
No 30
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.85 E-value=4.9e-20 Score=190.42 Aligned_cols=142 Identities=27% Similarity=0.457 Sum_probs=123.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhh-ccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC-
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~-~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~- 274 (777)
+.+||.|||+++.+.+|+.||. +.|.|+.|.++.| .+++.+|+|.|+|++++.+++|++.||...+.|+.|.|+...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4499999999999999999996 4789999999998 569999999999999999999999999999999999886320
Q ss_pred --------------------------------------------------------------------------------
Q 004036 275 -------------------------------------------------------------------------------- 274 (777)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (777)
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence
Q ss_pred ----------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcC
Q 004036 275 ----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (777)
Q Consensus 275 ----------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (777)
-..++||.||...+....|++.|.-.| .+..|.+-.+ ..+++++|+.+++.....|..|+..|..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 015688999999999999999999999 5666666544 4568899999999999999999988774
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=4.7e-20 Score=212.92 Aligned_cols=160 Identities=19% Similarity=0.425 Sum_probs=128.0
Q ss_pred CCCCCCcccccccccccHHHHHHHHhhcCC----------cceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHc
Q 004036 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGV----------DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (777)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~----------~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (777)
....++|||+|||+.+|+++|.++|..++. ..|..+.+. ..++||||+|.+.++|..||+ |+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345679999999999999999999997621 123333333 348999999999999999995 77
Q ss_pred CCceeccCCCCccccccCCCCCC------------------------CcccccccceeecCCCCCCCCHHHHHHHhhccC
Q 004036 343 KRDVLFGVDRPAKVSFADSFIDP------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (777)
Q Consensus 343 ~~~i~~~~~~~i~v~~a~~~~~~------------------------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G 398 (777)
+..+ .+..|+|......... ........++|||+|||..+++++|+++|..||
T Consensus 244 g~~~---~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SIIY---SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeEe---eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 7655 3677777644322200 000122347899999999999999999999999
Q ss_pred CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 399 ~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.|..|.|+.+..+|+++|||||+|.+.++|..||..|||..|.+.
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 999999999999999999999999999999999999999999863
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.3e-20 Score=181.10 Aligned_cols=169 Identities=20% Similarity=0.378 Sum_probs=152.2
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...+.|.|.-||.++|+++|+.+|...| .|..|+|++| +.+|.+-||+||.|...++|++|+..||+..+ ..++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiG--eiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIG--EIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhccc--ceeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee---ccce
Confidence 3456799999999999999999999999 8999999999 58999999999999999999999999999877 5889
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
|+|+++.+.... .....|||.+||..+|..+|.++|++||.|..-+|..+..+|.++|.+||.|+...+|+.||+
T Consensus 113 IKVSyARPSs~~-----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 113 IKVSYARPSSDS-----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred EEEEeccCChhh-----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 999999775443 233789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCCcceEEEEEee
Q 004036 434 SINNAELGEGDNKAKVRARL 453 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~ 453 (777)
.|||..-.|....++|+.+.
T Consensus 188 ~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred hccCCCCCCCCCCeEEEecC
Confidence 99999988766666665543
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.2e-19 Score=186.99 Aligned_cols=152 Identities=21% Similarity=0.416 Sum_probs=131.4
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...+.|||+.||.++.+++|..+|++.| .|..++||++. ..|.++|||||+|.+.+.|+.|++.||+..|. .++.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG--~I~elRLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--~GK~ 155 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIG--KIYELRLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--PGKL 155 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcc--ceeeEEEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc--CCCE
Confidence 3457899999999999999999999999 89999999984 67899999999999999999999999999886 5677
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCC-eEEEEEeecCC-CCCcccEEEEEeccHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMP-SAKRKDFGFVTFDTHDAAVTC 431 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~-v~~v~i~~~~~-~g~~kg~afV~F~~~~~A~~A 431 (777)
|.|..+ ...++|||+|||.++++++|.+.|++.++ |+.|.|...+. ..+++|||||+|+++..|..|
T Consensus 156 igvc~S-----------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 156 LGVCVS-----------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred eEEEEe-----------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHH
Confidence 776543 23389999999999999999999999986 66777765543 468999999999999999999
Q ss_pred HHHhCCCeeC
Q 004036 432 AKSINNAELG 441 (777)
Q Consensus 432 ~~~l~g~~~~ 441 (777)
-.+|-...|.
T Consensus 225 RrKl~~g~~k 234 (506)
T KOG0117|consen 225 RRKLMPGKIK 234 (506)
T ss_pred HhhccCCcee
Confidence 8887655544
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=1.7e-19 Score=167.21 Aligned_cols=169 Identities=24% Similarity=0.379 Sum_probs=145.6
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
...+|||+||+..++++.|+++|-+.| .|..+.+.++ ..++..+|||||+|.++++|.-|++.|+...+ -+++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqag--pVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAG--PVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcC--ceeeeecchh-hhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence 456999999999999999999999999 7999999888 46778999999999999999999999995555 38999
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
+|..+..... ...-+.+|||+||.+.+++..|.+.|+.||.|.. -.|+++..||.++|||||.|.+.+.+.+|+.
T Consensus 82 rv~kas~~~~----nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 82 RVNKASAHQK----NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEEecccccc----cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 9988873222 2233478999999999999999999999999765 4789999999999999999999999999999
Q ss_pred HhCCCeeCCCcceEEEEEeecC
Q 004036 434 SINNAELGEGDNKAKVRARLSR 455 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (777)
.|||..+.. ..++|...+.+
T Consensus 158 s~ngq~l~n--r~itv~ya~k~ 177 (203)
T KOG0131|consen 158 SMNGQYLCN--RPITVSYAFKK 177 (203)
T ss_pred HhccchhcC--CceEEEEEEec
Confidence 999999975 45666555544
No 35
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=6.9e-20 Score=180.99 Aligned_cols=153 Identities=26% Similarity=0.513 Sum_probs=138.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC-
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~- 275 (777)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..++...|..||.+||+..|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 35999999999999999999999999999999965 899999999999999999999999999999987754
Q ss_pred ---CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCC
Q 004036 276 ---SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (777)
Q Consensus 276 ---~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (777)
.++|+|+||.+.|+.++|+..|+++| .+++|.|+ ++|+||+|.-.++|..|++.|+++.+ .++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~yg--pviecdiv---------kdy~fvh~d~~eda~~air~l~~~~~---~gk 140 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIV---------KDYAFVHFDRAEDAVEAIRGLDNTEF---QGK 140 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccC--Cceeeeee---------cceeEEEEeeccchHHHHhccccccc---ccc
Confidence 47899999999999999999999999 78899988 67999999999999999999999988 699
Q ss_pred CccccccCCCCCCCccccc
Q 004036 353 PAKVSFADSFIDPGDEIMA 371 (777)
Q Consensus 353 ~i~v~~a~~~~~~~~~~~~ 371 (777)
.++|+...+..........
T Consensus 141 ~m~vq~stsrlrtapgmgD 159 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTAPGMGD 159 (346)
T ss_pred eeeeeeeccccccCCCCCC
Confidence 9999988776555444333
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.79 E-value=2e-19 Score=166.71 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=147.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
...||||+||+..++++.|.++|-+.|+|+.++|.+++.+...+|||||+|.+.++|.-|++.||...+.|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999989999999998774
Q ss_pred -------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCcee
Q 004036 275 -------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (777)
Q Consensus 275 -------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (777)
....|||+||.+.+++..|.+.|+.||. -+..-.++++ ..++.+++|+||.|.+.+.+.+|+..+++..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2357999999999999999999999994 3344466666 47889999999999999999999999998776
Q ss_pred ccCCCCccccccCCCCCC
Q 004036 348 FGVDRPAKVSFADSFIDP 365 (777)
Q Consensus 348 ~~~~~~i~v~~a~~~~~~ 365 (777)
..+++.|.++......
T Consensus 165 --~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 165 --CNRPITVSYAFKKDTK 180 (203)
T ss_pred --cCCceEEEEEEecCCC
Confidence 6888998887655443
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=4.8e-18 Score=186.81 Aligned_cols=219 Identities=25% Similarity=0.365 Sum_probs=164.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC--
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a-- 273 (777)
...|||.|||+.+++++|..+| |||.|...+.|.+|...|++..+.|+-|.|.+.
T Consensus 227 tgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~ 283 (725)
T KOG0110|consen 227 TGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKE 283 (725)
T ss_pred hhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcch
Confidence 4459999999999999999998 777788888888888888887777777765432
Q ss_pred --------------------------------------------------------------------------------
Q 004036 274 -------------------------------------------------------------------------------- 273 (777)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (777)
T Consensus 284 k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e 363 (725)
T KOG0110|consen 284 KSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQE 363 (725)
T ss_pred hhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchh
Confidence
Q ss_pred -------------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHH
Q 004036 274 -------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334 (777)
Q Consensus 274 -------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A 334 (777)
...+.|+|+|||..+..++|..+|..|| .|..+.+... -..++|+|.+..+|
T Consensus 364 ~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG--~i~rvllp~~-------G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 364 VRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFG--EIGRVLLPPG-------GTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhccc--ccceeecCcc-------cceeeeeecCccch
Confidence 0115688999999999999999999999 6777744311 23489999999999
Q ss_pred HHHHHHHcCCceeccCCCCccccccCCCC----------------C----C-------------C-c-----------cc
Q 004036 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFI----------------D----P-------------G-D-----------EI 369 (777)
Q Consensus 335 ~~Al~~l~~~~i~~~~~~~i~v~~a~~~~----------------~----~-------------~-~-----------~~ 369 (777)
.+|+..|+...+ ...++.+.|+.... . . . . ..
T Consensus 435 r~Afrklaysr~---k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 435 RKAFRKLAYSRF---KSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred HHHHHHhchhhh---ccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 999998877655 23333333321000 0 0 0 0 00
Q ss_pred ccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004036 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
....++|||.||++.+|.++|..+|.+.|.|..|.|...+.. -.+.|||||+|.+.++|+.|++.|+|+.|+|+.+.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 011134999999999999999999999999999988765432 13559999999999999999999999999985544
Q ss_pred EEE
Q 004036 447 AKV 449 (777)
Q Consensus 447 ~~v 449 (777)
|.+
T Consensus 592 lk~ 594 (725)
T KOG0110|consen 592 LKI 594 (725)
T ss_pred EEe
Confidence 443
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=4.7e-18 Score=165.65 Aligned_cols=186 Identities=24% Similarity=0.473 Sum_probs=154.6
Q ss_pred ccccccCCCC------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHH
Q 004036 265 GKQCGVTPSQ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (777)
Q Consensus 265 Gr~i~V~~a~------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al 338 (777)
.+.|.|+++. +.++|||+-|.+...+++++.+|..|| .|.+|.+++. ..+.++||+||.|.+..+|..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG--~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFG--NIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccC--CcceeEEecC--CCCCCCCceEEEeccchHHHHHH
Confidence 3667787763 457899999999999999999999999 8999998876 57889999999999999999999
Q ss_pred HHHcCCceeccCCCCccccccCCCCCC-----------------------------------------------------
Q 004036 339 KRLQKRDVLFGVDRPAKVSFADSFIDP----------------------------------------------------- 365 (777)
Q Consensus 339 ~~l~~~~i~~~~~~~i~v~~a~~~~~~----------------------------------------------------- 365 (777)
..|++...+.+....+.|.|++.....
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 999999888777777777774322100
Q ss_pred --------------------------------------------------------------------------------
Q 004036 366 -------------------------------------------------------------------------------- 365 (777)
Q Consensus 366 -------------------------------------------------------------------------------- 365 (777)
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence
Q ss_pred ----------------------------------------CcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEE
Q 004036 366 ----------------------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405 (777)
Q Consensus 366 ----------------------------------------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i 405 (777)
........++|||-.||.++.+.+|.++|-.||.|+..+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 0000012379999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeecCCCC
Q 004036 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458 (777)
Q Consensus 406 ~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~~~ 458 (777)
..|+.|+++|.|+||.|+++.+|++||..|||.+|+-. .+++++.+|+.
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK----RLKVQLKRPkd 366 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK----RLKVQLKRPKD 366 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhh----hhhhhhcCccc
Confidence 99999999999999999999999999999999999742 24445555543
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=4.8e-16 Score=164.83 Aligned_cols=236 Identities=19% Similarity=0.262 Sum_probs=166.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC-
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS- 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a- 273 (777)
....|.|.+|||.+|+++|.+||..|+ |+.+.+. ..+|+..|-|||+|.+.+++++||+ ++...+..+-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 345699999999999999999999987 5555554 4579999999999999999999999 4666677777776433
Q ss_pred ----------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHH
Q 004036 274 ----------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (777)
Q Consensus 274 ----------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~A 337 (777)
.....|.|.+||+.||+++|.+||+..-.+.. .|.++.+ ..+++.+-|||+|.+.+.|++|
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d--~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMD--QRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc-ceeeecc--CCCCcccceEEEecCHHHHHHH
Confidence 13357889999999999999999997753222 3445544 4677999999999999999999
Q ss_pred HHHHc----CCceeccCCCCc-------------------------cc--cccCCC------------------------
Q 004036 338 FKRLQ----KRDVLFGVDRPA-------------------------KV--SFADSF------------------------ 362 (777)
Q Consensus 338 l~~l~----~~~i~~~~~~~i-------------------------~v--~~a~~~------------------------ 362 (777)
|+... ...|.+...... +. .+....
T Consensus 162 l~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~ 241 (510)
T KOG4211|consen 162 LGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPS 241 (510)
T ss_pred HHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcc
Confidence 97322 111110000000 00 000000
Q ss_pred -CC---------------CC-------------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC
Q 004036 363 -ID---------------PG-------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (777)
Q Consensus 363 -~~---------------~~-------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~ 413 (777)
.. .. .........++..+||...+..+|..+|...-.+ .|.|-.. .+|+
T Consensus 242 ~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr 319 (510)
T KOG4211|consen 242 LQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGR 319 (510)
T ss_pred ccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCc
Confidence 00 00 0000112678899999999999999999976555 5665554 4689
Q ss_pred cccEEEEEeccHHHHHHHHHHhCCCee
Q 004036 414 RKDFGFVTFDTHDAAVTCAKSINNAEL 440 (777)
Q Consensus 414 ~kg~afV~F~~~~~A~~A~~~l~g~~~ 440 (777)
..|-|+|+|.+.++|..|+. -++..+
T Consensus 320 ~TGEAdveF~t~edav~Ams-kd~anm 345 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMG-KDGANM 345 (510)
T ss_pred cCCcceeecccchhhHhhhc-cCCccc
Confidence 99999999999999999975 344444
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=2.4e-16 Score=148.86 Aligned_cols=81 Identities=20% Similarity=0.455 Sum_probs=72.6
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+||++.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+ ..+.|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G--r~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG--RHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEE
Confidence 345889999999999999999999999999999999999999999999999999999999999999999986 334444
Q ss_pred Eee
Q 004036 451 ARL 453 (777)
Q Consensus 451 ~~~ 453 (777)
++.
T Consensus 110 ~a~ 112 (144)
T PLN03134 110 PAN 112 (144)
T ss_pred eCC
Confidence 333
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1e-16 Score=162.37 Aligned_cols=162 Identities=19% Similarity=0.396 Sum_probs=142.0
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
++|||+.|.+.+.++.|+..|..|| .|.+|.+..+ ..|+++++|+||+|.-.+.|..|+..+|+..+ .++.|+|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFG--PIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---GGRNiKV 187 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKV 187 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCC--Ccceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccccc---cCccccc
Confidence 4899999999999999999999999 5777776666 47899999999999999999999999998766 5888998
Q ss_pred cccCCCCCCCcc------cccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHH
Q 004036 357 SFADSFIDPGDE------IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430 (777)
Q Consensus 357 ~~a~~~~~~~~~------~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~ 430 (777)
............ ....-++|||..+..+.+++||+..|..||+|+.|.|.+.+.++..+||+||+|.+..+...
T Consensus 188 grPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 188 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred cCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 876554433321 22345899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeCCCc
Q 004036 431 CAKSINNAELGEGD 444 (777)
Q Consensus 431 A~~~l~g~~~~g~~ 444 (777)
||..||=..++|.-
T Consensus 268 AiasMNlFDLGGQy 281 (544)
T KOG0124|consen 268 AIASMNLFDLGGQY 281 (544)
T ss_pred Hhhhcchhhcccce
Confidence 99999999888743
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.68 E-value=1.9e-16 Score=165.30 Aligned_cols=234 Identities=22% Similarity=0.363 Sum_probs=173.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
+.++|||++|+|.++++.|+..|.+||.|.+|.|+++..++++++|+||+|++.+...++|.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567799999999999999999999999999999999999999999999999999999988874 5567899999887763
Q ss_pred C------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHc
Q 004036 275 D------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (777)
Q Consensus 275 ~------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (777)
. ..+|||+.|+..+++.+|++.|.++| .|..+.++.+ ..+...++|+||.|.+.+.+.+++.. .
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec-ccccccccceeeEeccccccceeccc-c
Confidence 2 34899999999999999999999999 7888888887 57889999999999999999888752 1
Q ss_pred CCceeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEe------ecCCCCCccc
Q 004036 343 KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA------RNMPSAKRKD 416 (777)
Q Consensus 343 ~~~i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~------~~~~~g~~kg 416 (777)
.+.+ +++.+.|..|.+..................|+....+.-.|..+|..|+.+.....- .-... .+.+
T Consensus 160 f~~~---~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g 235 (311)
T KOG4205|consen 160 FHDF---NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPL-FNGG 235 (311)
T ss_pred eeee---cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccc-cCCC
Confidence 2222 467777777665543332222222233333555555566677778877766411110 00011 3456
Q ss_pred EEEEEeccHHHHHHHHHHhCC
Q 004036 417 FGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 417 ~afV~F~~~~~A~~A~~~l~g 437 (777)
.+|..|.+......+...+++
T Consensus 236 ~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 236 SGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred ccccccCccccccccccccCC
Confidence 788888776666555444444
No 43
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.2e-15 Score=139.23 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=68.0
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEee
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (777)
++|||+||+..+++.+|..+|..||.|..|+|.+++ .|||||+|++..+|..|+..|||+.|+| +.|+|.+
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~ 81 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVEL 81 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccC----ceEEEEe
Confidence 899999999999999999999999999999999875 6799999999999999999999999987 4455555
Q ss_pred cCCCCC
Q 004036 454 SRPLQR 459 (777)
Q Consensus 454 ~~~~~~ 459 (777)
+....+
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 554333
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=1.8e-15 Score=156.16 Aligned_cols=239 Identities=19% Similarity=0.254 Sum_probs=179.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC--CeeeccccccCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~Gr~i~V~~ 272 (777)
....|.|+|||+++++.+|..++..||+|+.+.+.+.++ .|||+|.+.+.|...+..... ..+.|+.|-|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 456699999999999999999999999999999886432 699999999999884443322 123344443322
Q ss_pred C---------------------------------C-----------C--CCCcccccccccccHHHHHHHHhhcCCccee
Q 004036 273 S---------------------------------Q-----------D--SDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306 (777)
Q Consensus 273 a---------------------------------~-----------~--~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~ 306 (777)
+ . + --.++|.|+-..++-+-|..+|++|| .|.
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG--~Vl 178 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFG--FVL 178 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcc--eeE
Confidence 1 0 0 01456788888899999999999999 676
Q ss_pred EeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCC------------------CCC--
Q 004036 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------------------DPG-- 366 (777)
Q Consensus 307 ~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~------------------~~~-- 366 (777)
.|.-+...+ .--|+|+|.+...|..|...|.+..|..+ ++++++.|..-.. ...
T Consensus 179 KIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 666554321 23379999999999999999999988764 6666666532100 000
Q ss_pred ------------------------------------cccccc--cceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEee
Q 004036 367 ------------------------------------DEIMAQ--VKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELAR 407 (777)
Q Consensus 367 ------------------------------------~~~~~~--~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~ 407 (777)
..+..+ ...|.|.||... +|.+.|..+|.-||.|.+|+|..
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000111 367889999877 99999999999999999999998
Q ss_pred cCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeecCC
Q 004036 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 408 ~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
++ +.-|+|+|.+...|+-|+..|+|..|.| +.+++.+++-
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH 372 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKH 372 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccC
Confidence 85 4589999999999999999999999987 6666666653
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=2.7e-16 Score=168.88 Aligned_cols=169 Identities=22% Similarity=0.416 Sum_probs=141.1
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
.+.+++|+-.|....+..+|.++|+.+| .|..|.++.+ .+.+.++|.+||+|.+.+....|+. |.+..+ .+.+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~g--kVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-LsGqrl---lg~p 249 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVG--KVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRL---LGVP 249 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhc--CcceeEeecc-ccchhhcceeEEEEecccchhhHhh-hcCCcc---cCce
Confidence 4557899999999999999999999999 8999999988 5788899999999999999998884 666665 4778
Q ss_pred ccccccCCCCCC--------C-cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEecc
Q 004036 354 AKVSFADSFIDP--------G-DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424 (777)
Q Consensus 354 i~v~~a~~~~~~--------~-~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~ 424 (777)
+.|+........ . .....+...|||+||..++++++|+.+|+.||.|..|.+..+..||+++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 877764322211 0 1112233449999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 425 HDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 425 ~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.++|++|+.+|||.+|-|..+++.+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEE
Confidence 9999999999999999876555433
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.63 E-value=1.6e-15 Score=158.37 Aligned_cols=172 Identities=23% Similarity=0.466 Sum_probs=139.9
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
...+|||++|.|.++++.|+..|.++| .+..|.++++. .++++++|+||+|.+......+|.....+ + .++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G--ev~d~~vm~d~-~t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~---dgr~v 77 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG--EVTDCVVMRDP-STGRSRGFGFVTFATPEGVDAVLNARTHK-L---DGRSV 77 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC--ceeeEEEeccC-CCCCcccccceecCCCcchheeecccccc-c---CCccc
Confidence 456899999999999999999999999 89999999995 56999999999999998888887643222 1 35666
Q ss_pred cccccCCCCCCCc-ccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 355 KVSFADSFIDPGD-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 355 ~v~~a~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.+..+.+...... .....+++|||++||..+++++|+++|.+||.|..+.|+.+..+.+++||+||+|.+.+++.+++.
T Consensus 78 e~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 78 EPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 6555544332221 112256899999999999999999999999999999999999999999999999999999999865
Q ss_pred HhCCCeeCCCcceEEEEEeecCC
Q 004036 434 SINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
+.-+.|++ +.|+|..+..+.
T Consensus 158 -~~f~~~~g--k~vevkrA~pk~ 177 (311)
T KOG4205|consen 158 -QKFHDFNG--KKVEVKRAIPKE 177 (311)
T ss_pred -cceeeecC--ceeeEeeccchh
Confidence 66667764 567777766553
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.60 E-value=3e-14 Score=145.40 Aligned_cols=238 Identities=23% Similarity=0.223 Sum_probs=188.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc--cCCeeeccccccCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l--~~~~~~Gr~i~V~~ 272 (777)
.+-.|.|++|-..+++.+|.+.++.||+|..|.++.. +..|.|+|.+.+.|+.|+... +...+.|+...+..
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 3456999999999999999999999999999988754 345999999999999998753 34456777766655
Q ss_pred C-------------CCCCCc--ccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHH
Q 004036 273 S-------------QDSDTL--FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (777)
Q Consensus 273 a-------------~~~~~l--~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~A 337 (777)
+ ..++.| .|-|--..+|.+-|.+++..+| .|..|.|++.. --.|+|+|.+.+.|++|
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~G--kVlRIvIfkkn------gVQAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQG--KVLRIVIFKKN------GVQAMVEFDSVEVAQRA 175 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCC--ceEEEEEEecc------ceeeEEeechhHHHHHH
Confidence 4 122223 2455567789999999999999 89999998763 45699999999999999
Q ss_pred HHHHcCCceeccCCCCccccccCCCCCC----------------------------------------------------
Q 004036 338 FKRLQKRDVLFGVDRPAKVSFADSFIDP---------------------------------------------------- 365 (777)
Q Consensus 338 l~~l~~~~i~~~~~~~i~v~~a~~~~~~---------------------------------------------------- 365 (777)
...||+..|..+ ..++++.++++..-.
T Consensus 176 k~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 176 KAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred Hhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 999999998765 788888887543200
Q ss_pred -------------------C------cccccccceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEE
Q 004036 366 -------------------G------DEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419 (777)
Q Consensus 366 -------------------~------~~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~af 419 (777)
. ..-..+...+.|-+|... ++-+.|..+|..||.|..|++++.+ .|.|+
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtam 329 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAM 329 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeE
Confidence 0 011123467889999887 7889999999999999999999875 56999
Q ss_pred EEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004036 420 VTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 420 V~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
|++.+..+.+.|+..||+..+.|+.+.+.+..+
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 999999999999999999999875544444443
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.9e-14 Score=132.38 Aligned_cols=164 Identities=19% Similarity=0.321 Sum_probs=132.6
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
..++|||+|||..+.+.+|.++|-+|| .|..|.|.. .-..-.||||+|.+..+|..|+..-++..+ .+..|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg--~i~~ieLK~----r~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rL 75 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYG--RIREIELKN----RPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRL 75 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhc--ceEEEEecc----CCCCCCeeEEEecCccchhhhhhccccccc---CcceE
Confidence 456899999999999999999999999 677777642 234478999999999999999997777666 68999
Q ss_pred cccccCCCCCCC---------------------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC
Q 004036 355 KVSFADSFIDPG---------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (777)
Q Consensus 355 ~v~~a~~~~~~~---------------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~ 413 (777)
.|.|+....... .........|.|.+||.+.+|+||++++.+-|.|....+.++
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----- 150 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----- 150 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----
Confidence 999986543110 111223368999999999999999999999999999999877
Q ss_pred cccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeec
Q 004036 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454 (777)
Q Consensus 414 ~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (777)
|++.|+|...++.+-||.+|+...+.--....-+.+...
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 399999999999999999999988875444444444443
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.56 E-value=1.1e-13 Score=143.28 Aligned_cols=237 Identities=19% Similarity=0.290 Sum_probs=180.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc--cCCC-
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG--VTPS- 273 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~--V~~a- 273 (777)
..++|.|+-+.++-+-|.++|++||.|.+|.-+.. .+.-.|+|+|.+.+.|..|...|++..|..-.|. |.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 45889999999999999999999999987765532 2223499999999999999999998766433332 2111
Q ss_pred ------------------------------------------------------------------C--CCCCccccccc
Q 004036 274 ------------------------------------------------------------------Q--DSDTLFLGNIC 285 (777)
Q Consensus 274 ------------------------------------------------------------------~--~~~~l~V~nLp 285 (777)
. .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 02345566664
Q ss_pred -ccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCC-
Q 004036 286 -KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI- 363 (777)
Q Consensus 286 -~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~- 363 (777)
..+|.+.|..+|.-|| .|..|+|+... +..|+|++.+..+|..|+..|++..+ .++.|+|.+.+-..
T Consensus 307 ~~~VT~d~LftlFgvYG--dVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l---~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYG--DVQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKL---YGKKLRVTLSKHTNV 375 (492)
T ss_pred hhccchhHHHHHHhhhc--ceEEEEeeecC------CcceeeeecchhHHHHHHHHhhccee---cCceEEEeeccCccc
Confidence 6689999999999999 89999998774 56799999999999999999999888 36888877753211
Q ss_pred -----------------------------CCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCc
Q 004036 364 -----------------------------DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414 (777)
Q Consensus 364 -----------------------------~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~ 414 (777)
+.-..+-.++.+|++.|+|..+++++|+.+|...|-+++..... ++.
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd 451 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKD 451 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCC
Confidence 00011234567999999999999999999999998765443322 223
Q ss_pred ccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeecC
Q 004036 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455 (777)
Q Consensus 415 kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~ 455 (777)
+-+|++.|.+.+.|..|+-.|+++.+.++. .+++.+++
T Consensus 452 ~kmal~q~~sveeA~~ali~~hnh~lgen~---hlRvSFSk 489 (492)
T KOG1190|consen 452 RKMALPQLESVEEAIQALIDLHNHYLGENH---HLRVSFSK 489 (492)
T ss_pred cceeecccCChhHhhhhccccccccCCCCc---eEEEEeec
Confidence 559999999999999999999999997642 34555554
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.2e-14 Score=155.55 Aligned_cols=236 Identities=20% Similarity=0.357 Sum_probs=176.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcc-----------C-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCe
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQV-----------G-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~-----------G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (777)
..+.++|++||+.++++.+..+|..- | .|..+.|- ..+.||||+|.+.+.|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccchh
Confidence 45569999999999999999888764 2 24444443 346799999999999999988 67777
Q ss_pred eeccccccCCC-----------------------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeec
Q 004036 263 INGKQCGVTPS-----------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313 (777)
Q Consensus 263 ~~Gr~i~V~~a-----------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d 313 (777)
+.|..+++... ...+.|||++||..+++.++++++..|| .+....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg--~lk~f~lv~d 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG--PLKAFRLVKD 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc--cchhheeecc
Confidence 77776655211 1236799999999999999999999999 7888888887
Q ss_pred CCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCCC-----C--------------cccccccc
Q 004036 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----G--------------DEIMAQVK 374 (777)
Q Consensus 314 ~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~-----~--------------~~~~~~~~ 374 (777)
. .++.+++|||.+|.+......|+..||+..+ .++.+.|+.+-..... . +....++.
T Consensus 325 ~-~~g~skg~af~ey~dpsvtd~A~agLnGm~l---gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 325 S-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred c-ccccccceeeeeeeCCcchhhhhcccchhhh---cCceeEeehhhccchhccccCCccccccccchhhhcccCCCcch
Confidence 4 6689999999999999999999999998777 3566666654221100 0 11112334
Q ss_pred eeecCCCCC--CCC--------HHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeccHHHHHHHHHHhCCCeeC
Q 004036 375 TVFVDGLPA--SWD--------EDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (777)
Q Consensus 375 ~l~V~nLp~--~~t--------~~dL~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~A~~A~~~l~g~~~~ 441 (777)
+|++.|+=. ... -++|+..|.+||.|..|.|.+.... .-..|..||+|.+.++|++|++.|+|.+|.
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 444444321 111 1567788899999999999887322 334678999999999999999999999998
Q ss_pred CC
Q 004036 442 EG 443 (777)
Q Consensus 442 g~ 443 (777)
+.
T Consensus 481 nR 482 (500)
T KOG0120|consen 481 NR 482 (500)
T ss_pred Cc
Confidence 74
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.5e-14 Score=132.79 Aligned_cols=140 Identities=19% Similarity=0.334 Sum_probs=121.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|+|+|||.++.+.+|..||.+||.|+.|.|.. ......||||+|+++.+|+.||.--++..+.|.+|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4567899999999999999999999999999998853 2446789999999999999999999999999999999876
Q ss_pred CC--------------------------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCc
Q 004036 274 QD--------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321 (777)
Q Consensus 274 ~~--------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~k 321 (777)
.. ...|.|.+||...++++|++++.+.| .++-..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc--------
Confidence 21 24689999999999999999999999 6666666554
Q ss_pred ceEEEeecChhHHHHHHHHHcCCce
Q 004036 322 GFAFLEFSSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~~~~i 346 (777)
+.+.|+|...++.+-|+..|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 5899999999999999998876544
No 52
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=3.6e-14 Score=134.17 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=72.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEee
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (777)
..|.|.||...|+.++|+.+|++||.|..|.|+++..|++++|||||.|....+|+.|+++|+|..|+| .++.|++
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----RelrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----RELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----ceeeehh
Confidence 789999999999999999999999999999999999999999999999999999999999999999998 4555555
Q ss_pred cC
Q 004036 454 SR 455 (777)
Q Consensus 454 ~~ 455 (777)
++
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 54
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.54 E-value=1.7e-13 Score=132.88 Aligned_cols=195 Identities=17% Similarity=0.326 Sum_probs=140.3
Q ss_pred eEEEeCCCCCCCHHHHHH----HhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 198 EVFVGGLDKDVVGDDLRK----VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~----~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
||+|.||+..+..++|+. +|++||.|..|.... +.+.+|.|||.|.+.+.|-.|+..|+|..|.|+.++|.++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 899999999999999887 999999999998874 5778999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
.....++..--+..+..+ - .+....+.... .....++..+. ++...
T Consensus 88 ~s~sdii~~~~~~~v~~~---------~--k~~~~~~~~~~-~~~~~ng~~~~--------------~~~~~-------- 133 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKE---------K--KINGEILARIK-QPLDTNGHFYN--------------MNRMN-------- 133 (221)
T ss_pred cCccchhhccCceecccc---------C--ccccccccccC-Ccccccccccc--------------ccccc--------
Confidence 777665544222111100 0 00011111000 00000110000 11110
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
+...+ . .....+..+||+.|||..++.+.|..+|.+|.-...|+++... .+.|||+|.+...|..|..
T Consensus 134 ~p~p~------~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 134 LPPPF------L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred CCCCc------c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhh
Confidence 11111 1 2223456899999999999999999999999999999988764 6799999999999999999
Q ss_pred HhCCCeeC
Q 004036 434 SINNAELG 441 (777)
Q Consensus 434 ~l~g~~~~ 441 (777)
.|++..|.
T Consensus 202 ~lq~~~it 209 (221)
T KOG4206|consen 202 ALQGFKIT 209 (221)
T ss_pred hhccceec
Confidence 99998886
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.3e-14 Score=138.26 Aligned_cols=160 Identities=21% Similarity=0.419 Sum_probs=133.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC-eeec--cccccC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VING--KQCGVT 271 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~G--r~i~V~ 271 (777)
+.++|||+-|.+.-.+++++.+|..||.|.+|.+++.. .|.++|+|||.|.+..+|..||..||+. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45669999999999999999999999999999999864 5899999999999999999999999964 2322 112221
Q ss_pred CC------------------------------------------------------------------------------
Q 004036 272 PS------------------------------------------------------------------------------ 273 (777)
Q Consensus 272 ~a------------------------------------------------------------------------------ 273 (777)
++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 11
Q ss_pred --------------------------------------------------------------------------------
Q 004036 274 -------------------------------------------------------------------------------- 273 (777)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (777)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------------------------CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEe
Q 004036 274 --------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327 (777)
Q Consensus 274 --------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~ 327 (777)
.+.+.|||-.||..+.+.+|..+|-.|| .|++.+++.| ..|+.++.|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSaKVFvD-RATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSAKVFVD-RATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeeeeeeeh-hccccccceeeEe
Confidence 1127899999999999999999999999 7888888877 5789999999999
Q ss_pred ecChhHHHHHHHHHcCCceeccCCCCccccccCC
Q 004036 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (777)
Q Consensus 328 F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~ 361 (777)
|.+...+..|++.+|+-.| .-+.++|++-.+
T Consensus 334 fDNp~SaQaAIqAMNGFQI---GMKRLKVQLKRP 364 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQI---GMKRLKVQLKRP 364 (371)
T ss_pred cCCchhHHHHHHHhcchhh---hhhhhhhhhcCc
Confidence 9999999999999999887 356677766544
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.2e-13 Score=130.39 Aligned_cols=83 Identities=27% Similarity=0.588 Sum_probs=77.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++++++||||+|.+.++|+.||+.||+..|.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 004036 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 543
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=3e-12 Score=130.95 Aligned_cols=232 Identities=15% Similarity=0.178 Sum_probs=174.5
Q ss_pred EEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec--cccccCCCCC--
Q 004036 200 FVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTPSQD-- 275 (777)
Q Consensus 200 fV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~G--r~i~V~~a~~-- 275 (777)
-|-|--+.+|.+-|..+....|+|..|.|++. +--.|.|+|++.+.|++|...||+..|.- -+|+|+++++
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 34555578899999999999999999999853 34469999999999999999999986632 3344433311
Q ss_pred --------------------------------------------------------------------------------
Q 004036 276 -------------------------------------------------------------------------------- 275 (777)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (777)
T Consensus 201 lnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~ 280 (494)
T KOG1456|consen 201 LNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYAS 280 (494)
T ss_pred eeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCC
Confidence
Q ss_pred ------CCCccccccc-ccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceec
Q 004036 276 ------SDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (777)
Q Consensus 276 ------~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~ 348 (777)
...+.|-+|. .+++-+.|.++|-.|| +|..|++++.. .+.|+|++.+..+.+.|+..||+..++
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~lf- 351 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPLF- 351 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCccc-
Confidence 0223444444 3456788999999999 99999999885 788999999999999999999998772
Q ss_pred cCCCCccccccCCCC--------------------------------CCCcccccccceeecCCCCCCCCHHHHHHHhhc
Q 004036 349 GVDRPAKVSFADSFI--------------------------------DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396 (777)
Q Consensus 349 ~~~~~i~v~~a~~~~--------------------------------~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~ 396 (777)
+.+|.|.+..... .....+..++++|+.-|.|..+|++.|..||..
T Consensus 352 --G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne 429 (494)
T KOG1456|consen 352 --GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE 429 (494)
T ss_pred --cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh
Confidence 4555544432110 112345567899999999999999999999988
Q ss_pred cCC-eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 397 YGE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 397 ~G~-v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.+. -+.|+|...+... .-.++++|++..+|..||..||...|.+-.-...+
T Consensus 430 k~v~~~svkvFp~kser--SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~Pf 481 (494)
T KOG1456|consen 430 KDVPPTSVKVFPLKSER--SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPF 481 (494)
T ss_pred cCCCcceEEeecccccc--cccceeeeehHHHHHHHHHHhccccccCCCCCCCe
Confidence 765 3466666554222 33689999999999999999999999875444333
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.46 E-value=5.9e-13 Score=127.37 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=128.2
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
.-+||||.+||.++...+|..+|..|- ....+.|....+....++.+|||+|.+...|.+|++.||+..+....+..+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 357999999999999999999999997 567777766666667788999999999999999999999988877777777
Q ss_pred cccccCCCCCCCc-------------------------------------------------------------------
Q 004036 355 KVSFADSFIDPGD------------------------------------------------------------------- 367 (777)
Q Consensus 355 ~v~~a~~~~~~~~------------------------------------------------------------------- 367 (777)
.+.+++.......
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 7777543220000
Q ss_pred --------------ccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 368 --------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 368 --------------~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.......+|||.||..+||+++|+.+|+.|--...++|... .| ...|||+|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHH
Confidence 00001258999999999999999999999976665665432 23 3489999999999999999
Q ss_pred HhCCCeeC
Q 004036 434 SINNAELG 441 (777)
Q Consensus 434 ~l~g~~~~ 441 (777)
.|+|..|.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998885
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.46 E-value=7.9e-13 Score=140.64 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=118.4
Q ss_pred CcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHH----HcCCceeccCCCC
Q 004036 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR----LQKRDVLFGVDRP 353 (777)
Q Consensus 278 ~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~----l~~~~i~~~~~~~ 353 (777)
.|.+.+|||+||+++|.+||+.++ |..+.+.+. +++..|-|||+|.+.+++.+||++ |....|.+.....
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 577899999999999999999996 777766544 688899999999999999999984 3333333222333
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
..+.|.-........ ....+|.+.+||+.||++||.+||+-.-.|.. |.|+.+ ..+++.|-|||+|++.+.|++|+
T Consensus 86 ~e~d~~~~~~g~~s~--~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSS--ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccccccCCCCCCC--CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH
Confidence 333333322222111 34468999999999999999999998777666 334444 46779999999999999999997
Q ss_pred HHhCCCeeCCCcceEEEEEee
Q 004036 433 KSINNAELGEGDNKAKVRARL 453 (777)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~ 453 (777)
. -|...|. +.-++|..+.
T Consensus 163 ~-rhre~iG--hRYIEvF~Ss 180 (510)
T KOG4211|consen 163 G-RHRENIG--HRYIEVFRSS 180 (510)
T ss_pred H-HHHHhhc--cceEEeehhH
Confidence 6 3334443 4556665443
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4.8e-12 Score=126.53 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=74.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+-+||||+-|+..+++..|+..|.+||.|+.|.|+++..||+++|||||+|++..+..+|.+..+|.+|++.. |.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr--i~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR--ILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE--EEEE
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999744 4444
Q ss_pred Eee
Q 004036 451 ARL 453 (777)
Q Consensus 451 ~~~ 453 (777)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 443
No 60
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=2.4e-12 Score=132.01 Aligned_cols=245 Identities=15% Similarity=0.171 Sum_probs=169.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
......|..++|||..++.+|..+|.......-...+.....+...|.|.|.|.+.+.-..|++. |...+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34456688999999999999999998764433333333334577889999999999999999985 66667778777743
Q ss_pred CC----------------------CCCCcccccccccccHHHHHHHHhhcCCc--ceeEeEEeecCCCCCCCcceEEEee
Q 004036 273 SQ----------------------DSDTLFLGNICKTWTKEALKEKLKHYGVD--NVEDLTLVEDSNNEGMNRGFAFLEF 328 (777)
Q Consensus 273 a~----------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~--~i~~i~l~~d~~~~g~~kg~afV~F 328 (777)
+. +...|.+.+||++++..++.++|.....+ ....|.++.. ..++..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEe
Confidence 31 12345678999999999999999743322 2344555433 5788899999999
Q ss_pred cChhHHHHHHHHHcC----CceeccCCCC--------------ccccccCCCCC--C--CcccccccceeecCCCCCCCC
Q 004036 329 SSRSDAMDAFKRLQK----RDVLFGVDRP--------------AKVSFADSFID--P--GDEIMAQVKTVFVDGLPASWD 386 (777)
Q Consensus 329 ~s~e~A~~Al~~l~~----~~i~~~~~~~--------------i~v~~a~~~~~--~--~~~~~~~~~~l~V~nLp~~~t 386 (777)
...++|..||..-.. ..|.+..... +......+... + .........+|.+.+||...+
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~At 293 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEAT 293 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhh
Confidence 999999999863211 1110000000 00000000000 0 001112257899999999999
Q ss_pred HHHHHHHhhccCC-eEE--EEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC
Q 004036 387 EDRVRELLKNYGE-ITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (777)
Q Consensus 387 ~~dL~~~F~~~G~-v~~--v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~ 441 (777)
.+||.+||..|-. |.. |.++.+ ..|++.|-|||+|.+.++|.+|+...+++...
T Consensus 294 vEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 294 VEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred HHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 9999999999865 433 677666 46899999999999999999999888877663
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=4.3e-12 Score=129.33 Aligned_cols=192 Identities=19% Similarity=0.313 Sum_probs=132.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr 266 (777)
.+..|||.|||.++|-+++.++|++||.|.. |+|.++.+ |+.+|-|++.|-..+++..|++.|+...|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3556999999999999999999999998743 78888754 99999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCce
Q 004036 267 QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 267 ~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i 346 (777)
.|+|..|+ |+.-|. ..+... .++ ...-.+-++.++...+
T Consensus 212 ~~rVerAk----------------------fq~Kge-----~~~~~k------~k~--------k~~~~kk~~k~q~k~~ 250 (382)
T KOG1548|consen 212 KLRVERAK----------------------FQMKGE-----YDASKK------EKG--------KCKDKKKLKKQQQKLL 250 (382)
T ss_pred EEEEehhh----------------------hhhccC-----cCcccc------ccc--------ccccHHHHHHHHHhhc
Confidence 99998762 222220 000000 000 0000111222222222
Q ss_pred eccCCCCccccccCCCCCCCcccccccceeecCCCCCC----CC-------HHHHHHHhhccCCeEEEEEeecCCCCCcc
Q 004036 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS----WD-------EDRVRELLKNYGEITKIELARNMPSAKRK 415 (777)
Q Consensus 347 ~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~----~t-------~~dL~~~F~~~G~v~~v~i~~~~~~g~~k 415 (777)
-+...+ .........++|.|.||-.- .+ +++|.+-+.+||.|..|.|.-.+ +.
T Consensus 251 dw~pd~------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----Pd 314 (382)
T KOG1548|consen 251 DWRPDR------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PD 314 (382)
T ss_pred ccCCCc------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CC
Confidence 111000 01111223367777777432 22 36778889999999999987554 46
Q ss_pred cEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 416 DFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
|.+-|.|.+.++|..||+.|+|+.|.|+.
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 79999999999999999999999999744
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.4e-13 Score=128.91 Aligned_cols=82 Identities=32% Similarity=0.499 Sum_probs=76.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|.|.||+.++++.+|+++|.+||.|..|.|.+++.||.++|||||+|.+.++|.+||..|||.-++. +.+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999998864 77888
Q ss_pred eecCCC
Q 004036 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.+++|.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 888874
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.8e-13 Score=133.03 Aligned_cols=146 Identities=19% Similarity=0.328 Sum_probs=119.2
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
..+||++|++.+.+.+|..||..+| .+..+.+. .+|+||+|.+..+|..|+..|++..+. +..+.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg--~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYG--KIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC---GERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcc--ccccceee---------cccceeccCchhhhhcccchhcCceec---ceeeee
Confidence 3689999999999999999999999 66666654 789999999999999999999988774 333777
Q ss_pred cccCCCCCC---------------CcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEE
Q 004036 357 SFADSFIDP---------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421 (777)
Q Consensus 357 ~~a~~~~~~---------------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~ 421 (777)
.++...... ........+.|+|.||+..+.|++|.++|.++|.+....+. .+++||+
T Consensus 68 e~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~ 139 (216)
T KOG0106|consen 68 EHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVE 139 (216)
T ss_pred ecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------cccccee
Confidence 777642110 01112234678999999999999999999999999666653 3499999
Q ss_pred eccHHHHHHHHHHhCCCeeCCCc
Q 004036 422 FDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 422 F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
|.+..+|..|+..|++..|.+..
T Consensus 140 Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred ehhhhhhhhcchhccchhhcCce
Confidence 99999999999999999998733
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.39 E-value=3.8e-12 Score=121.89 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=113.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHhccCCeee---ccccccC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCGVT 271 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d-~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~---Gr~i~V~ 271 (777)
-+||||.+||.++...+|..+|..|--...+.|... +.....+.+|||+|.+...|..|++.||+..|+ +..|.|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 568999999999999999999999866665655443 222346689999999999999999999998874 4455554
Q ss_pred CCC-----------------------------------------------------------------------------
Q 004036 272 PSQ----------------------------------------------------------------------------- 274 (777)
Q Consensus 272 ~a~----------------------------------------------------------------------------- 274 (777)
.++
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 330
Q ss_pred ---------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHH
Q 004036 275 ---------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (777)
Q Consensus 275 ---------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (777)
...+|||.||..+||+++|+.+|+.|-...|..|+- ..| ...+|++|...+.|..|+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-----~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-----RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-----CCC--cceEeecHHHHHHHHHHHH
Confidence 015899999999999999999999998444444432 122 5679999999999999999
Q ss_pred HHcCCcee
Q 004036 340 RLQKRDVL 347 (777)
Q Consensus 340 ~l~~~~i~ 347 (777)
.|++..+.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99987763
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.3e-12 Score=107.54 Aligned_cols=66 Identities=27% Similarity=0.626 Sum_probs=63.5
Q ss_pred eecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 376 l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
|||+|||..+++++|+++|.+||.|..|.|..+ .++..+++|||+|.+.++|++|++.|||..|.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 678999999999999999999999999999986
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.3e-12 Score=114.47 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=68.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..+++|||+||+..+++++|.++|+++|.|..|.+-.++.+..+.|||||+|.+.++|..|++-++|+.++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=4.6e-12 Score=104.29 Aligned_cols=70 Identities=39% Similarity=0.727 Sum_probs=66.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~ 269 (777)
|||+|||..+++++|+++|.+||.|..+.+..+ .++..+++|||+|.+.++|++|+..|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999998874
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=123.71 Aligned_cols=77 Identities=31% Similarity=0.626 Sum_probs=71.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
-++|||++|+|.+..+.|+++|++||.|+++.|+.|+.+++++||+||+|.+.++|.+|++. -+.+|+||+..++++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999995 567899999888766
No 69
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=5.1e-12 Score=122.86 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=68.3
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.-++|||+||+|.+..+.|+++|++||+|+.+.|+.|+.+|++|||+||+|.+.++|.+|++.. +-.|+|+...|.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3489999999999999999999999999999999999999999999999999999999999844 44677655445543
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.9e-12 Score=122.67 Aligned_cols=82 Identities=32% Similarity=0.423 Sum_probs=78.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
+..+|.|.||+.++++.+|.+||..||.|..|.|.+++.||.++|||||.|.+.++|.+||..||+.-+....|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004036 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.7e-12 Score=110.10 Aligned_cols=84 Identities=18% Similarity=0.360 Sum_probs=79.1
Q ss_pred HHhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004036 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 190 ~~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~ 269 (777)
....++++||||+||++.+++++|.+||+++|.|..|.|=.|+.+....|||||+|-+.++|..||+.++++.+..+.|.
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 004036 270 VTPS 273 (777)
Q Consensus 270 V~~a 273 (777)
|.+.
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9875
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=1.8e-11 Score=100.97 Aligned_cols=66 Identities=26% Similarity=0.580 Sum_probs=61.4
Q ss_pred eecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 376 l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
|||+|||+++++++|+++|..||.|..|.+..+.. ++.+++|||+|.+.++|.+|+..+++..|.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999977 8999999999999999999999999999986
No 73
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=6.3e-12 Score=123.57 Aligned_cols=137 Identities=26% Similarity=0.450 Sum_probs=116.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC--
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD-- 275 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~-- 275 (777)
.|||++||+.+.+.+|..||..||.|..|.+. .+|+||+|.+..+|..|+..||+.+|.+..+.|.++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999998875 56899999999999999999999999998877766531
Q ss_pred ------------------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecCh
Q 004036 276 ------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331 (777)
Q Consensus 276 ------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~ 331 (777)
...|+|.+|...+.+++|.++|.++|. +....+ ..+++||+|.+.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~---------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA---------RRNFAFVEFSEQ 143 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh---------hccccceeehhh
Confidence 245788899999999999999999993 322222 278999999999
Q ss_pred hHHHHHHHHHcCCceeccCCCCccc
Q 004036 332 SDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
++|..|+..|++..+ .++.|.+
T Consensus 144 ~da~ra~~~l~~~~~---~~~~l~~ 165 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKL---NGRRISV 165 (216)
T ss_pred hhhhhcchhccchhh---cCceeee
Confidence 999999999998877 3555544
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=2e-10 Score=119.93 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=129.8
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...+.+||.|||+.+.|++|+++|..... .|+.|.|+.+ ..+++++||.|+|++.+.+++|++.||+..+ .+++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvG-ev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR~ 115 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVG-EVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV---NGRE 115 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcC-ceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc---cCce
Confidence 44456999999999999999999985532 7888888887 5789999999999999999999999998877 5677
Q ss_pred ccccccCCCC---------------------------------------------CC-----------------------
Q 004036 354 AKVSFADSFI---------------------------------------------DP----------------------- 365 (777)
Q Consensus 354 i~v~~a~~~~---------------------------------------------~~----------------------- 365 (777)
|.|.--.... +.
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 6664311100 00
Q ss_pred -----------Cc-ccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 366 -----------GD-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 366 -----------~~-~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.. -......++||.||...+....|++.|.-.|.|+.|.+-.++. |.++|||.|+|.++-.|..||.
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHH
Confidence 00 0111236899999999999999999999999999999998875 5899999999999999999999
Q ss_pred HhCCCeeC
Q 004036 434 SINNAELG 441 (777)
Q Consensus 434 ~l~g~~~~ 441 (777)
.|++.-+.
T Consensus 275 ml~~~g~~ 282 (608)
T KOG4212|consen 275 MLDRQGLF 282 (608)
T ss_pred hhccCCCc
Confidence 99875443
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=122.93 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=72.3
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|+|.|||+...+.||+.+|.+||+|..|.|+.+. .-+|||+||+|++.+||++|-++|||..|.| ++++|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG--RkIEVn~ 170 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG--RKIEVNN 170 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec--eEEEEec
Confidence 44899999999999999999999999999999999884 5689999999999999999999999999996 6677776
Q ss_pred eecC
Q 004036 452 RLSR 455 (777)
Q Consensus 452 ~~~~ 455 (777)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 6655
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.23 E-value=3.2e-11 Score=99.50 Aligned_cols=70 Identities=34% Similarity=0.653 Sum_probs=64.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~ 269 (777)
|+|+|||+.+++++|.++|..+|.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..|.|++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999998999999873
No 77
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=122.76 Aligned_cols=172 Identities=27% Similarity=0.416 Sum_probs=125.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
..+|||+|||+.+++++|.++|.+||.|..|.|..+..++.++|||||+|.+.+.|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999988643
Q ss_pred --CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 276 --SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 276 --~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
.......++ ....+....
T Consensus 195 ~~~~~~~~~~~----------------------------------------------------~~~~~~~~~-------- 214 (306)
T COG0724 195 ASQPRSELSNN----------------------------------------------------LDASFAKKL-------- 214 (306)
T ss_pred ccccccccccc----------------------------------------------------cchhhhccc--------
Confidence 000000000 000000000
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.............+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111233789999999999999999999999999888777665544455555555555555555544
Q ss_pred HhC
Q 004036 434 SIN 436 (777)
Q Consensus 434 ~l~ 436 (777)
.+.
T Consensus 286 ~~~ 288 (306)
T COG0724 286 RGN 288 (306)
T ss_pred ccc
Confidence 433
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.7e-12 Score=119.36 Aligned_cols=103 Identities=21% Similarity=0.489 Sum_probs=83.3
Q ss_pred HHHHHHHcCCceeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCc
Q 004036 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414 (777)
Q Consensus 335 ~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~ 414 (777)
.+.++.||...+.++ ..-.++|-..+... .-|||+|||...|+.||..+|++||+|+.|.|+++..||++
T Consensus 7 vk~i~~lne~Elq~g--~~~~~SWH~~Ykds--------A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS 76 (219)
T KOG0126|consen 7 VKNIQKLNERELQLG--IADKKSWHQEYKDS--------AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS 76 (219)
T ss_pred HHHHHHhhHHhhccc--cccccchhhhcccc--------eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc
Confidence 344556666555433 22245555444333 67999999999999999999999999999999999999999
Q ss_pred ccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004036 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 415 kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
+||||+.|++..+..-|+..|||..|.|+.+.+
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 999999999999999999999999998744333
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=4.9e-11 Score=120.45 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=62.7
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
.++|||+||++.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|+.||. |||..|.+..+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceE
Confidence 37999999999999999999999999999999998853 46899999999999999995 99999987443
No 80
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.9e-11 Score=120.13 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=73.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
=+||||+-|+.++++..|+..|..||.|..|+|+.++.||+++|||||+|.+..++..|.+..++..|+|+.|.|..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987764
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=7.3e-11 Score=104.44 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=76.9
Q ss_pred ccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
....+.|||.++...+++++|.+.|..||+|++|.|-.++.||..+|||+|+|++...|++||..|||..|.+.. +.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~--v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN--VSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc--eeE
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999744 555
Q ss_pred EEeecCCC
Q 004036 450 RARLSRPL 457 (777)
Q Consensus 450 ~~~~~~~~ 457 (777)
...|.+++
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 55665543
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.15 E-value=9.4e-11 Score=118.41 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=70.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. +++||||+|.+.++|..||. ||+..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46799999999999999999999999999999998753 57899999999999999996 999999999999998753
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=4.6e-11 Score=113.32 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
-++|.|-||.+-++.++|..+|.+||.|.+|.|..+..|+.++|||||.|....+|+.|+.+|++.+|.|+.|.|..|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999988754
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=6.3e-12 Score=116.91 Aligned_cols=79 Identities=32% Similarity=0.510 Sum_probs=75.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
.+.-|||+|||++.|+.+|.-.|++||.|+.|.+++|+.||+++||||+.|.+......|+..||+..|.|+.|+|..+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4566999999999999999999999999999999999999999999999999999999999999999999999999865
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=5.7e-11 Score=110.27 Aligned_cols=73 Identities=32% Similarity=0.474 Sum_probs=68.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
.++|||+||+..+++.+|..+|..||.|..|.|..+ ..|||||+|.++.+|..|+..|++..|+|..|.|+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 577999999999999999999999999999999864 5799999999999999999999999999999998765
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=4.4e-11 Score=105.81 Aligned_cols=81 Identities=22% Similarity=0.486 Sum_probs=77.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
..+...|||.++...+|+++|.+.|..||+|..|++-.+..||-.+|||+|+|.+.++|++|+..||+..|.|+.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 004036 273 S 273 (777)
Q Consensus 273 a 273 (777)
|
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 7
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1.4e-10 Score=122.51 Aligned_cols=73 Identities=15% Similarity=0.302 Sum_probs=65.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccH--HHHHHHHHHhCCCeeCCCcceEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH--DAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~--~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
...+||||||++.+++++|..+|..||.|..|.|+ +.+| +|||||+|.+. .++.+||..|||..+.|+.+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 44789999999999999999999999999999999 4467 99999999987 78999999999999998554443
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2.8e-10 Score=113.07 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..+|||+||++.+|+++|++||+.||.|..|.|+++. ..++||||+|.+.++|..|+. |||..|.+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCce
Confidence 4799999999999999999999999999999999884 445799999999999999984 9999998744
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=4.1e-10 Score=92.24 Aligned_cols=66 Identities=30% Similarity=0.670 Sum_probs=61.9
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+|+|.|||..+++++|+++|.+||.|..|.+..+. +.++++|||+|.+..+|++|+..|++..|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999975
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=5.8e-10 Score=90.97 Aligned_cols=65 Identities=32% Similarity=0.629 Sum_probs=61.8
Q ss_pred cCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 378 V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
|+|||..+++++|+++|.+||.|..|.|..+..++.++++|||+|.+.++|..|+..|++..|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 68999999999999999999999999999988788999999999999999999999999999975
No 91
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.7e-10 Score=116.93 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=71.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
...|+|.|||+...+.||+.+|.+||+|.+|.|+.+. ..+|||+||+|.+.++|.+|-.+||+++|.||+|.|..+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4459999999999999999999999999999999764 4689999999999999999999999999999999998773
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.07 E-value=2.1e-10 Score=121.20 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=70.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCH--HHHHHHHHhccCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV--EQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~--e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
..+|||+||++.+++++|..+|..||.|..|.|++ .+| +|||||+|.+. .++.+||..||+..|.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 46799999999999999999999999999999994 456 99999999987 7899999999999999999999988
Q ss_pred CC
Q 004036 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 44
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.8e-10 Score=94.89 Aligned_cols=67 Identities=15% Similarity=0.383 Sum_probs=62.3
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.|||.|||..+|.+++.++|.+||.|.+|+|-....| +|.|||.|++..+|++|+.+|+|..+.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCC
Confidence 478999999999999999999999999999999776544 7899999999999999999999999986
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=4.3e-10 Score=111.74 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=70.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
...+|||+||++.+|+++|++||+.||.|..|.|+.+. ...+||||+|.+.+.|..||. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999874 456899999999999999995 99999999999998764
Q ss_pred C
Q 004036 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=6.9e-10 Score=90.91 Aligned_cols=72 Identities=35% Similarity=0.660 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
+|+|.|||..++.++|+++|.+||.|..+.++.+. +.++++|||+|.+.+.|+.|+..|++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998765 6788999999999999999999999999999988763
No 96
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.05 E-value=6.6e-10 Score=119.21 Aligned_cols=84 Identities=20% Similarity=0.452 Sum_probs=78.4
Q ss_pred hcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 192 ~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
+....++|||.+|...+...+|++||++||+|+-++|+++..+...++|+||++.+.++|.+||..||.+.|+|+.|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34457789999999999999999999999999999999999998899999999999999999999999999999999998
Q ss_pred CCCC
Q 004036 272 PSQD 275 (777)
Q Consensus 272 ~a~~ 275 (777)
.+++
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 7744
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-10 Score=110.10 Aligned_cols=84 Identities=27% Similarity=0.522 Sum_probs=77.7
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||++|...+++.-|...|-.||.|+.|.|+.+..+++.+|||||+|+..++|.+||..||+.+|.| .++++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 44899999999999999999999999999999999999999999999999999999999999999999987 66777
Q ss_pred eecCCCCC
Q 004036 452 RLSRPLQR 459 (777)
Q Consensus 452 ~~~~~~~~ 459 (777)
.+++|..-
T Consensus 85 N~AkP~ki 92 (298)
T KOG0111|consen 85 NLAKPEKI 92 (298)
T ss_pred eecCCccc
Confidence 77777543
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=7.9e-11 Score=132.92 Aligned_cols=218 Identities=18% Similarity=0.169 Sum_probs=174.0
Q ss_pred CcceEEEeCCCCCCCHH-HHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 195 KEFEVFVGGLDKDVVGD-DLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~-~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
....+.+.++-+..... .++..|..++.|..|++......-....++++.+.....++.|.. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34557778887776665 678889999999999987632222333488999999999998887 4556677777777655
Q ss_pred CC----------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHH
Q 004036 274 QD----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (777)
Q Consensus 274 ~~----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~A 337 (777)
.. ..++||.||+..+.+.+|...|..++.+.++.+.+ ..+.+..+|+||+.|...+.+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~---h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVI---HKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHH---HhhccccccceeeEeecCCchhhh
Confidence 22 14689999999999999999999999554444442 346778899999999999999999
Q ss_pred HHHHcCCceeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccE
Q 004036 338 FKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417 (777)
Q Consensus 338 l~~l~~~~i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~ 417 (777)
+.......+ + ...|||.|+|+..|.+.|+.+|.++|.++.+.++..+ .|+++|.
T Consensus 726 V~f~d~~~~----g---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~ 779 (881)
T KOG0128|consen 726 VAFRDSCFF----G---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGK 779 (881)
T ss_pred hhhhhhhhh----h---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccc
Confidence 985544332 1 1679999999999999999999999999999987775 6899999
Q ss_pred EEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 418 GFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 418 afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
|||.|.+..+|..++..++...+..
T Consensus 780 a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 780 ARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred eeccCCCcchhhhhcccchhhhhhh
Confidence 9999999999999999888887764
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1e-09 Score=89.47 Aligned_cols=71 Identities=38% Similarity=0.681 Sum_probs=66.3
Q ss_pred EeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 201 V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
|+|||..+++++|+++|.+||.|..+.+..+..++.++++|||+|.+.+.|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887788999999999999999999999999999999988763
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.2e-10 Score=108.48 Aligned_cols=84 Identities=21% Similarity=0.519 Sum_probs=79.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|||++|..++++.-|...|..||.|+.|.|..|..+++.+|||||+|.-.++|.+||..+|...|.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004036 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7653
No 101
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=91.61 Aligned_cols=76 Identities=17% Similarity=0.344 Sum_probs=68.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
...|||.|||+.+|.+++.++|.+||+|.+|+|-.. ...+|.|||.|++..+|++|+..|++..+.++.|.|..-+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 456999999999999999999999999999999654 5569999999999999999999999999999998886543
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=5.1e-09 Score=86.17 Aligned_cols=67 Identities=33% Similarity=0.674 Sum_probs=62.2
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+|+|+|||..+++++|+++|..||.|..+.+.....+ ..+++|||+|.+.++|..|+..+++..+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4899999999999999999999999999999987654 678999999999999999999999999876
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=3.5e-09 Score=87.23 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=51.1
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeecCCC--CCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 387 EDRVRELLK----NYGEITKIE-LARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 387 ~~dL~~~F~----~~G~v~~v~-i~~~~~~--g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..|||+.|.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 578889998 999999995 7766666 89999999999999999999999999999873
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=5.4e-09 Score=86.04 Aligned_cols=73 Identities=40% Similarity=0.696 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
+|+|.|||..+++++|+++|..+|.|..+.+..+..+ ...++|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987654 678999999999999999999999999999998875
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=4.1e-09 Score=110.97 Aligned_cols=71 Identities=31% Similarity=0.615 Sum_probs=68.6
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.++|||+|||..+++++|.++|.+||.|..|.|..+..++.++|||||+|.+.++|..|+..|++..|.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 48999999999999999999999999999999999998999999999999999999999999999999873
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.89 E-value=6.9e-09 Score=112.97 Aligned_cols=68 Identities=26% Similarity=0.475 Sum_probs=56.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+|||.|||.+++...|+++|.+||.|+...|......++...||||+|.+.++++.||.+- -..|++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~ 356 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG 356 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC
Confidence 45999999999999999999999999998888765444554589999999999999999854 444443
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.1e-08 Score=108.27 Aligned_cols=164 Identities=19% Similarity=0.356 Sum_probs=115.8
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcc---eEEEeecChhHHHHHHHHHcCC--ceec-c
Q 004036 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG---FAFLEFSSRSDAMDAFKRLQKR--DVLF-G 349 (777)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg---~afV~F~s~e~A~~Al~~l~~~--~i~~-~ 349 (777)
.++|||++||+.++++.|...|..||...|.--. .........++| |+|+.|+++.....-+...... ..++ .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPG-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCC-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 4689999999999999999999999943222111 011112234466 9999999999888877654331 1111 0
Q ss_pred CCCCcc---cc---c--cC-CCCCCCcccccccceeecCCCCCCCCHHHHHHHhh-ccCCeEEEEEeecCCCCCcccEEE
Q 004036 350 VDRPAK---VS---F--AD-SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGF 419 (777)
Q Consensus 350 ~~~~i~---v~---~--a~-~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~-~~G~v~~v~i~~~~~~g~~kg~af 419 (777)
.-.+++ |+ | ++ ...........+.+|||||+||.-++.++|..||. .||.|..+-|-+|+.-+.++|-|=
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 111111 10 1 11 11112334456779999999999999999999998 699999999999988899999999
Q ss_pred EEeccHHHHHHHHH----HhCCCee
Q 004036 420 VTFDTHDAAVTCAK----SINNAEL 440 (777)
Q Consensus 420 V~F~~~~~A~~A~~----~l~g~~~ 440 (777)
|+|.+..+-.+||. .|+...|
T Consensus 418 VtFsnqqsYi~AIsarFvql~h~d~ 442 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISARFVQLDHTDI 442 (520)
T ss_pred eeecccHHHHHHHhhheEEEecccc
Confidence 99999999999987 3455555
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-09 Score=111.77 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
.....|||..|.+.+|.++|.-+|+.||+|..|.|+++..||.+..||||+|.+.+++++|.-+|++..|..+.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 004036 274 Q 274 (777)
Q Consensus 274 ~ 274 (777)
+
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 4
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-09 Score=108.89 Aligned_cols=85 Identities=13% Similarity=0.301 Sum_probs=75.1
Q ss_pred ccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
..+-+.|||.-|.+-++.+||.-||+.||.|..|.|+++..||.+-.||||+|++.++|++|.-+|++..|....+.+.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999975544444
Q ss_pred EEeec
Q 004036 450 RARLS 454 (777)
Q Consensus 450 ~~~~~ 454 (777)
....+
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 33333
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.84 E-value=4e-09 Score=115.53 Aligned_cols=79 Identities=33% Similarity=0.529 Sum_probs=76.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
++|||+|||+++++++|..+|...|.|..++++.|..+|+++||||++|.+.+.|..|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999999998744
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=5.5e-09 Score=100.06 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=70.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhcc-CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~-G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
..++|..||..+.+..|..+|.+| |.|..+++.++..||.++|||||+|++.+.|+-|.+.||+..|.++.+.|+|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 678999999999999999999998 7888889989999999999999999999999999999999999987666665
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=7.1e-09 Score=114.02 Aligned_cols=159 Identities=23% Similarity=0.409 Sum_probs=123.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~ 275 (777)
...+||++||...++.++++++..||.+....++.+..++.+++|||.+|.+.-....|+..||+..+.+++|.|..+-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999888865511
Q ss_pred C------------------------------CCccccccc--ccc-c-------HHHHHHHHhhcCCcceeEeEEeec-C
Q 004036 276 S------------------------------DTLFLGNIC--KTW-T-------KEALKEKLKHYGVDNVEDLTLVED-S 314 (777)
Q Consensus 276 ~------------------------------~~l~V~nLp--~~~-t-------e~~L~~~F~~~G~~~i~~i~l~~d-~ 314 (777)
. ..|++.|+- ..+ . -++++.-|.+|| .|..|.+.+. .
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYP 446 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCC
Confidence 1 112222210 000 1 244556677888 6777777665 2
Q ss_pred C-CCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcccccc
Q 004036 315 N-NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359 (777)
Q Consensus 315 ~-~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a 359 (777)
. ...-..|..||+|.+.++|+.|.+.|++.++ .++.+...+-
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF---~nRtVvtsYy 489 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKF---ANRTVVASYY 489 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCcee---CCcEEEEEec
Confidence 1 2334578899999999999999999999988 5666655543
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.82 E-value=5.8e-09 Score=114.29 Aligned_cols=69 Identities=25% Similarity=0.490 Sum_probs=68.0
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.|||+|||+++++++|..+|...|.|..++++.|+.||+++|||||+|.+.++|..|++.|||.+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999987
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.79 E-value=1.6e-08 Score=83.35 Aligned_cols=61 Identities=21% Similarity=0.503 Sum_probs=54.9
Q ss_pred HHHHHHHhh----ccCceeEEE-EeeCCCC--CCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004036 210 GDDLRKVFS----QVGEVTEVR-LMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 210 e~~L~~~f~----~~G~v~~v~-i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V 270 (777)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999996 7776666 889999999999999999999999999999999875
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.76 E-value=1.1e-08 Score=107.20 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=123.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
....++|++++.+.+.+.++..++...|.+..+.+........++++++|.|...+.+..||.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 34667999999999999999999999999888888877778899999999999999999999853322222222211100
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
+.+. +...+. .. .
T Consensus 166 -------------------------------------------------~~~~-----------~~~~n~-~~------~ 178 (285)
T KOG4210|consen 166 -------------------------------------------------TRRG-----------LRPKNK-LS------R 178 (285)
T ss_pred -------------------------------------------------cccc-----------ccccch-hc------c
Confidence 0000 000000 00 0
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
+. .....+.++|+||+..++.++|+.+|..+|.|..+++.....++..+|||||.|.....+..|+.
T Consensus 179 ~~-------------~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 179 LS-------------SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred cc-------------cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 00 00111344599999999999999999999999999999999999999999999999999999987
Q ss_pred HhCCCeeCC
Q 004036 434 SINNAELGE 442 (777)
Q Consensus 434 ~l~g~~~~g 442 (777)
. +...+.+
T Consensus 246 ~-~~~~~~~ 253 (285)
T KOG4210|consen 246 D-QTRSIGG 253 (285)
T ss_pred c-ccCcccC
Confidence 6 6666654
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.75 E-value=4.6e-08 Score=76.75 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=43.7
Q ss_pred HHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 390 L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
|.++|++||.|..|.+.... +++|||+|.+.++|..|+..|||..|.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 78999999999999998763 57999999999999999999999999873
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=2.2e-08 Score=103.32 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=110.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccC----ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc-
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG----EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG- 269 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G----~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~- 269 (777)
....|.+++||+++++.++.+||..-- .+..|.+++. ..|+..|-|||.|...+.|+.||.+ |...|.-+.|.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 355688999999999999999997432 3455666653 3588899999999999999999985 32223222222
Q ss_pred ------------------------------------cCCCCCCCCcccccccccccHHHHHHHHhhcCCc-ceeEeEEee
Q 004036 270 ------------------------------------VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVD-NVEDLTLVE 312 (777)
Q Consensus 270 ------------------------------------V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~-~i~~i~l~~ 312 (777)
|..+....+|.+.+||+..+.++|..+|..|-.. ....+.++-
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 1222446789999999999999999999988631 222344443
Q ss_pred cCCCCCCCcceEEEeecChhHHHHHHHHHcCCc
Q 004036 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (777)
Q Consensus 313 d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~ 345 (777)
+..|+..|-|||+|.+.+.|..|.+..+++.
T Consensus 318 --N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 318 --NGQGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred --cCCCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 5789999999999999999999998776543
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.71 E-value=2.2e-08 Score=78.60 Aligned_cols=56 Identities=38% Similarity=0.703 Sum_probs=50.0
Q ss_pred HHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 213 L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
|.++|++||.|..|.+..+. .++|||+|.+.++|..|++.||+..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998643 589999999999999999999999999999998753
No 119
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.2e-07 Score=103.22 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=65.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V 270 (777)
.....+|+|-|||..+++++|..+|..||.|..|+.. -...+.+||+|-+..+|+.|++.|+...|.|++|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 3456789999999999999999999999999997654 345889999999999999999999999999998883
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.66 E-value=6.4e-09 Score=107.68 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=126.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCC---CCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
.|.|.||.+.+|.+++..||...|+|.++.|+.+... ......|||.|.+...+..|.. |.+++|-++.|.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 6999999999999999999999999999999874332 3455689999999999988877 88888888887776542
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
+.. -.... +|..++..+++.-.|..+ | |.|.+.... .++.....+...-+|
T Consensus 88 ~~~-----------~p~r~--af~~l~~~navprll~pd--------g---~Lp~~~~lt-----~~nh~p~ailktP~L 138 (479)
T KOG4676|consen 88 DEV-----------IPDRF--AFVELADQNAVPRLLPPD--------G---VLPGDRPLT-----KINHSPNAILKTPEL 138 (479)
T ss_pred CCC-----------CccHH--HHHhcCcccccccccCCC--------C---ccCCCCccc-----cccCCccceecCCCC
Confidence 211 11111 344333111111111111 0 111111100 000000000000001
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004036 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
...+ ....+..-..+|+|++|+..+...+|.++|..+|.|....+.-. ...-+|.|+|........|+.
T Consensus 139 p~~~------~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr- 207 (479)
T KOG4676|consen 139 PPQA------AAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR- 207 (479)
T ss_pred ChHh------hhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-
Confidence 0000 01112222378999999999999999999999999987776533 334588899999999888866
Q ss_pred hCCCeeC
Q 004036 435 INNAELG 441 (777)
Q Consensus 435 l~g~~~~ 441 (777)
++|..+.
T Consensus 208 ~~gre~k 214 (479)
T KOG4676|consen 208 SHGRERK 214 (479)
T ss_pred hcchhhh
Confidence 7887775
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.65 E-value=1e-07 Score=105.27 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=96.4
Q ss_pred cccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccC
Q 004036 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360 (777)
Q Consensus 281 V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~ 360 (777)
++.++++....+++++|...- +..+.|..+. ......|.++|.|.....+.+|++.-....+ .+.+.+.-+.
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~~---~~~~~l~~~~-v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~----~R~~q~~P~g 387 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGRN---AQSTDLSENR-VAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV----NRPFQTGPPG 387 (944)
T ss_pred ecccccccccchhhhhcCccc---ccccchhhhh-cCCCcCCceEEEecCcchHHHHHhcCchhhh----hcceeecCCC
Confidence 355566667788888876542 4444443331 1222378899999999999999874221111 2222221110
Q ss_pred --------CCCC-----------------------CC---cccccccceeecCCCCCCCCHHHHHHHhhccCCeEE-EEE
Q 004036 361 --------SFID-----------------------PG---DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IEL 405 (777)
Q Consensus 361 --------~~~~-----------------------~~---~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~-v~i 405 (777)
.... .. ......+.+|||..||..++..++.++|...-.|+. |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 0000 00 011123479999999999999999999999888877 555
Q ss_pred eecCCCCCcccEEEEEeccHHHHHHHHHHhCCCee
Q 004036 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (777)
Q Consensus 406 ~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~ 440 (777)
.+. .+++.++.|||.|..++++.+|+..-+...+
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred ccC-Ccccccchhhheeccccccchhhhccccccc
Confidence 444 5788899999999999888888654333333
No 122
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=8.4e-09 Score=99.10 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=112.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
..+||||.||-..++++-|.++|.+.|+|..|.|..++. ++.+ ||||.|.+......|++.+|+..+.++.|.|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 456799999999999999999999999999999988755 3444 99999999999999999999999999999875
Q ss_pred CCCCccccc----ccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcC
Q 004036 275 DSDTLFLGN----ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (777)
Q Consensus 275 ~~~~l~V~n----Lp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (777)
++.++ |...++.+.+...|...+ .+..+++..+ ..++++.++|+.+....+.-.++.....
T Consensus 83 ----~r~G~shapld~r~~~ei~~~v~s~a~--p~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 83 ----LRCGNSHAPLDERVTEEILYEVFSQAG--PIEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred ----cccCCCcchhhhhcchhhheeeecccC--CCCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 45566 777788889999999998 5666666655 3477889999988776666666665444
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.63 E-value=2.1e-07 Score=100.38 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=70.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|+|.+|...+...||+.||++||+|+-.+|+++..+.-.+.|+||+|.+.++|.+||..|+-++|.| ..|.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG--rmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG--RMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc--eeeeee
Confidence 345899999999999999999999999999999999998787789999999999999999999999999986 334444
Q ss_pred Ee
Q 004036 451 AR 452 (777)
Q Consensus 451 ~~ 452 (777)
.+
T Consensus 481 ka 482 (940)
T KOG4661|consen 481 KA 482 (940)
T ss_pred ec
Confidence 33
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=6.3e-08 Score=110.27 Aligned_cols=160 Identities=18% Similarity=0.303 Sum_probs=126.4
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004036 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
.+.+||++||+..+++.+|+..|..+| .+..|.|... ..+.-..|+||.|.+..++-.|...+.+..|..+ ...+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~g--kve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESG--KVEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhc--cccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC-cccc
Confidence 457999999999999999999999999 5666665443 2344578999999999999999888877766433 2222
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004036 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
.+ ... ....++.|+|++|..++....|...|..||.|..|.+-.. .-||+|.|++...|++|+..
T Consensus 446 gl--G~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 446 GL--GQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cc--ccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 21 111 2244588999999999999999999999999999888654 33999999999999999999
Q ss_pred hCCCeeCCCcceEEEEEeecCC
Q 004036 435 INNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 435 l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
|-|..|++.... +++.++.+
T Consensus 511 ~rgap~G~P~~r--~rvdla~~ 530 (975)
T KOG0112|consen 511 MRGAPLGGPPRR--LRVDLASP 530 (975)
T ss_pred HhcCcCCCCCcc--cccccccC
Confidence 999999886655 55555554
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.59 E-value=6.2e-08 Score=108.54 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=83.8
Q ss_pred HHhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004036 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 190 ~~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~ 269 (777)
+....-++||||++|+..+++.+|.++|..||.|..|.++. ++++|||++....+|.+||.+|++..+.++.|+
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 34455688999999999999999999999999999999875 488999999999999999999999999999999
Q ss_pred cCCCCCC-----------CCcccccccccccHHHHHHHHh
Q 004036 270 VTPSQDS-----------DTLFLGNICKTWTKEALKEKLK 298 (777)
Q Consensus 270 V~~a~~~-----------~~l~V~nLp~~~te~~L~~~F~ 298 (777)
|.|+... ..|=|.-||+..-..+|..++.
T Consensus 489 i~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 489 IAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 9998432 1233455666554455555554
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.57 E-value=7.8e-08 Score=92.32 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=71.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcc-CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~-G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
...++|..||..+.+..|..+|.+| |.|+.+++.+++.||+++|||||+|.+.+.|+.|.+.||+..|.++.|.|...
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4458999999999999999999998 78888999899999999999999999999999999999999999988876653
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.51 E-value=4.4e-07 Score=100.38 Aligned_cols=69 Identities=10% Similarity=0.207 Sum_probs=60.2
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.|-+.|+|+.++-+||.+||..|-.+-.-.+++-...|..+|-|.|-|++.+.|.+|...|+++.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 378899999999999999999999776544444444679999999999999999999999999999975
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.1e-08 Score=115.96 Aligned_cols=136 Identities=26% Similarity=0.363 Sum_probs=114.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
+..+++||.||+..+.+.+|...|..+|.|..+.|....+.+..+|+|||.|...+.|.+|+.......+ |
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------
Confidence 3455699999999999999999999999988887776677899999999999999999999996554433 3
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (777)
+..|+|.|+|+.+|.+.|+.+|.++| ++..+.++.. ..++++|.+||.|.+..++..++......
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~g--n~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTG--NVTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccC--Cccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 44789999999999999999999999 6666665533 56889999999999999999998755443
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.4e-07 Score=96.06 Aligned_cols=145 Identities=23% Similarity=0.341 Sum_probs=105.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCC--CCCCcc---eEEEEecCHHHHHHHHHhcc----CCee
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ--TKKNKG---FAFLRFATVEQARQAVTELK----NPVI 263 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~--~g~~~g---~afV~F~s~e~A~~Al~~l~----~~~~ 263 (777)
..-.++|||++||++++++.|...|..||.+..---.+... .-..+| |+|+.|.+...++..|.... +..|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 34467799999999999999999999999865321111101 112455 99999999988887776543 2212
Q ss_pred -------eccccccC---------------CCCCCCCcccccccccccHHHHHHHHh-hcCCcceeEeEEeecCCCCCCC
Q 004036 264 -------NGKQCGVT---------------PSQDSDTLFLGNICKTWTKEALKEKLK-HYGVDNVEDLTLVEDSNNEGMN 320 (777)
Q Consensus 264 -------~Gr~i~V~---------------~a~~~~~l~V~nLp~~~te~~L~~~F~-~~G~~~i~~i~l~~d~~~~g~~ 320 (777)
..+.+.|. ...+.+||||++||..++.++|..+|. -|| .|+-+.|-.|+ .-+-+
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG--gV~yaGIDtD~-k~KYP 412 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--GVLYVGIDTDP-KLKYP 412 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC--ceEEEEeccCc-ccCCC
Confidence 12223331 125678999999999999999999999 788 56666665552 45667
Q ss_pred cceEEEeecChhHHHHHHHH
Q 004036 321 RGFAFLEFSSRSDAMDAFKR 340 (777)
Q Consensus 321 kg~afV~F~s~e~A~~Al~~ 340 (777)
+|.|-|+|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999863
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.44 E-value=2.6e-07 Score=91.09 Aligned_cols=139 Identities=22% Similarity=0.349 Sum_probs=100.5
Q ss_pred EeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCCCC-cccccccceeecCCCCCCC
Q 004036 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG-DEIMAQVKTVFVDGLPASW 385 (777)
Q Consensus 307 ~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~-~~~~~~~~~l~V~nLp~~~ 385 (777)
...++++ ..+...+++|+.|....+-.++...-++..+ ...+++..-.....++. .+....-.+||.+.|...+
T Consensus 128 ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNev 202 (290)
T KOG0226|consen 128 KTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKI---GKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEV 202 (290)
T ss_pred hhhhhhc--CCCccCcccccCcchhhhhhhhccccccccc---cCcceeeccccccCCcccccCccccceeecccccccc
Confidence 3344443 3456689999999877766666554444443 12223333333332221 1222334789999999999
Q ss_pred CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004036 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 386 t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
+.+.|-..|.+|-.....+++++.-||+++||+||.|.+.+++..|+..|||+.++. ..+++++.
T Consensus 203 nd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs--rpiklRkS 267 (290)
T KOG0226|consen 203 NDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS--RPIKLRKS 267 (290)
T ss_pred cHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc--chhHhhhh
Confidence 999999999999998899999999999999999999999999999999999999974 44444443
No 131
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=3.9e-07 Score=102.32 Aligned_cols=67 Identities=21% Similarity=0.441 Sum_probs=62.0
Q ss_pred ccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++||||++|+..+++.||.++|+.||.|..|.++.. ++||||++....+|.+|+.+|++..|..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc
Confidence 345689999999999999999999999999999999866 7899999999999999999999988875
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=6.7e-07 Score=92.03 Aligned_cols=77 Identities=31% Similarity=0.536 Sum_probs=68.3
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc-cCCeeeccccccC
Q 004036 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~Gr~i~V~ 271 (777)
+....+|||++|-..+++.+|+++|-+||.|..|.++.. +++|||+|.+.++|+.|..++ |.++|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345667999999999999999999999999999999864 458999999999999999886 6778899999999
Q ss_pred CCCC
Q 004036 272 PSQD 275 (777)
Q Consensus 272 ~a~~ 275 (777)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 8765
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=3.9e-07 Score=104.03 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=131.4
Q ss_pred HhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004036 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 191 ~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V 270 (777)
.......|||++||...+++.+|+..|..+|.|..|.|.+.. -+.-..||||.|.+...+-.|+..+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344567789999999999999999999999999999987642 3566779999999999999999888887765444444
Q ss_pred C----CCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCce
Q 004036 271 T----PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 271 ~----~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i 346 (777)
. .+...+.+++++|...+....|...|..||. |..|.+-.. ..|++|++.+...+..|+..+.+..+
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC-------CcceeeecccCccchhhHHHHhcCcC
Confidence 3 3456788999999999999999999999994 444444332 77999999999999999998888776
Q ss_pred eccCCCCccccccCCCCCC
Q 004036 347 LFGVDRPAKVSFADSFIDP 365 (777)
Q Consensus 347 ~~~~~~~i~v~~a~~~~~~ 365 (777)
-. ..+.+.|.|+......
T Consensus 517 G~-P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 517 GG-PPRRLRVDLASPPGAT 534 (975)
T ss_pred CC-CCcccccccccCCCCC
Confidence 43 3566888888665433
No 134
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.32 E-value=5.1e-06 Score=85.13 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=65.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
-++||+||-|++|.+||.+.+...| .|..+++..++.+|++||||+|...+.++.++.++.|--++|.|..-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 6899999999999999999988776 46788889999999999999999999999999999999999988643
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=3.3e-07 Score=88.28 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=114.1
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004036 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...++|||.|+-..++++-|.++|-+.| .|..+.|.... .+..+ ||||.|.++....-|++.+|+..+. +.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaG--PV~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAG--PVYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDLE---EDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccC--ceEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchhc---cch
Confidence 3457999999999999999999999999 67788776552 34444 9999999999999999999987763 455
Q ss_pred ccccccCCCCCCCcccccccceeecCC----CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHH
Q 004036 354 AKVSFADSFIDPGDEIMAQVKTVFVDG----LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~ 429 (777)
+++ +++.++ |...++++.+...|+.-|.|.-+++.++.. |+++.++||++....+.-
T Consensus 79 ~q~------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 79 EQR------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred hhc------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 553 455555 677789999999999999999999988864 888999999998888887
Q ss_pred HHHHHhCCCee
Q 004036 430 TCAKSINNAEL 440 (777)
Q Consensus 430 ~A~~~l~g~~~ 440 (777)
.|+...++..+
T Consensus 140 ~~~~~y~~l~~ 150 (267)
T KOG4454|consen 140 FALDLYQGLEL 150 (267)
T ss_pred HHhhhhcccCc
Confidence 78776666544
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=89.05 Aligned_cols=75 Identities=31% Similarity=0.519 Sum_probs=62.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCC-eeCCCcceEEEE
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA-ELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~-~~~g~~~~~~v~ 450 (777)
..++|||++|...+++.+|+++|.+||.|..|.+... +++|||+|.+..+|+.|...+-+. .|+| ..+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~ 296 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING----FRLK 296 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc----eEEE
Confidence 3479999999999999999999999999999999876 559999999999999998866554 4443 4455
Q ss_pred EeecCC
Q 004036 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.|.++
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 557766
No 137
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.29 E-value=1.5e-06 Score=84.99 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=61.6
Q ss_pred ceeecCCCCCCCCHHHHHH----HhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 374 KTVFVDGLPASWDEDRVRE----LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~----~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
.||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+.+|+|..|.|..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 4999999999999999988 999999998887764 4678999999999999999999999999998733
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.27 E-value=6.3e-06 Score=83.46 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=67.3
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
..+|.|.||+..|+..||+++|..||.+..+.|-.++ .|.+.|.|-|.|...++|.+||+.+||..++|..+++.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3789999999999999999999999988888777764 799999999999999999999999999888876544443
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=4.8e-06 Score=84.59 Aligned_cols=78 Identities=13% Similarity=0.272 Sum_probs=70.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.....+||+|+...+|.+.|..+|+.||.|..|.|+.+..++.++|||||+|.+.+.++.|+. ||+..|.+..+.+..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 344899999999999999999999999999999999999999999999999999999999999 999999875544443
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=5.3e-06 Score=71.95 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=70.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~--G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
+||.|.|||...|.++|.+++... |..-.+.|+.|..++.+.|||||-|.+++.|.+-.+.++|..+........+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988763 778889999999999999999999999999999999999999976544445555
Q ss_pred eecC
Q 004036 452 RLSR 455 (777)
Q Consensus 452 ~~~~ 455 (777)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.16 E-value=3.5e-06 Score=87.72 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=71.5
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
...+|||.+|+..+++++|.++|.++|.|. .|+|-+++.|+.+|+-|.|+|++...|++||..++++.|.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g- 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG- 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC-
Confidence 447899999999999999999999999884 57888999999999999999999999999999999999997
Q ss_pred cceEEEEEeecC
Q 004036 444 DNKAKVRARLSR 455 (777)
Q Consensus 444 ~~~~~v~~~~~~ 455 (777)
..++|.++..+
T Consensus 144 -n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 -NTIKVSLAERR 154 (351)
T ss_pred -CCchhhhhhhc
Confidence 33555444433
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.03 E-value=1e-05 Score=82.01 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
..++|.|.||+..+++++|++||..||.+..+.|-.+ .+|.+.|+|-|.|...++|..|++.+|+..+.|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3467999999999999999999999998888877776 45999999999999999999999999999999999887654
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.02 E-value=5.7e-06 Score=81.84 Aligned_cols=154 Identities=20% Similarity=0.355 Sum_probs=116.5
Q ss_pred ceEEEeCCCCCCCHHH-H--HHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc---
Q 004036 197 FEVFVGGLDKDVVGDD-L--RKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--- 270 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~-L--~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V--- 270 (777)
..+|+.++-..+..+- | ...|..+-.+...+++.+. .+...+++|+.|.....-.++-..-++..+.-..|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3466777666665554 3 5677777777666776653 3667899999999877777666655555554443433
Q ss_pred ---------CCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHH
Q 004036 271 ---------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341 (777)
Q Consensus 271 ---------~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l 341 (777)
+|..+.-+||++.|...++.+-|...|.+|- .+...+++++ ..+++++||+||.|.+..++..|+..+
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp--sf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP--SFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhcc--chhhcccccc-ccccccccceeeeecCHHHHHHHHHhh
Confidence 2335557899999999999999999999998 6777788888 579999999999999999999999999
Q ss_pred cCCceeccCCCCcccc
Q 004036 342 QKRDVLFGVDRPAKVS 357 (777)
Q Consensus 342 ~~~~i~~~~~~~i~v~ 357 (777)
+++.+ ..++|++.
T Consensus 253 ~gkyV---gsrpiklR 265 (290)
T KOG0226|consen 253 NGKYV---GSRPIKLR 265 (290)
T ss_pred ccccc---ccchhHhh
Confidence 99877 45666543
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.00 E-value=8e-06 Score=83.00 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=75.6
Q ss_pred HhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004036 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 191 ~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V 270 (777)
+.......|||+|+.+.+|.++|..+|+.||.|..|.|..+...++.++||||+|.+.+.++.++. |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567779999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred CCC
Q 004036 271 TPS 273 (777)
Q Consensus 271 ~~a 273 (777)
.+.
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 754
No 145
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.96 E-value=6.6e-06 Score=81.55 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=63.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCC--------CCCcc----eEEEEecCHHHHHHHHHhccCCe
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT--------KKNKG----FAFLRFATVEQARQAVTELKNPV 262 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~--------g~~~g----~afV~F~s~e~A~~Al~~l~~~~ 262 (777)
+...|||++||+.+...-|+++|.+||.|-.|.+.....+ +.+.. -+||+|.+...|+.+...||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5677999999999999999999999999999988766444 22222 38999999999999999999999
Q ss_pred eecccc
Q 004036 263 INGKQC 268 (777)
Q Consensus 263 ~~Gr~i 268 (777)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988763
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.95 E-value=3.5e-05 Score=66.92 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=60.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcc--CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQV--GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~--G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
+||+|.|||...|.++|.+++... |..--+-+..|..++.+.|||||.|.+++.|....+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 689999999999999999988663 56677778888889999999999999999999999998887664
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.91 E-value=1.2e-05 Score=87.99 Aligned_cols=75 Identities=25% Similarity=0.442 Sum_probs=61.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
..+|||.|||.+++..+|+++|..||.|+...|......++..+||||+|.+.++++.||.+ +...|.+++|.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 44599999999999999999999999999988876543345559999999999999999996 4555566665544
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=8.7e-06 Score=89.14 Aligned_cols=71 Identities=28% Similarity=0.375 Sum_probs=62.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
....+|+|-|||..|+.++|..+|..||+|..|..-.. .+|.+||+|.+..+|+.|++.||+..|.+..++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34589999999999999999999999999999765443 478999999999999999999999999875544
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.83 E-value=3e-05 Score=68.92 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=40.3
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~ 438 (777)
..|+|.++...++.++|+++|++||.|.+|++..... .|||.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5788999999999999999999999999999987633 8999999999999999977555
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.80 E-value=3.1e-05 Score=86.49 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=68.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP---SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~---~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
..+++|||+||+..++++.|...|..||.|..|+|+..+. ..+.+.++||-|-+..+|++|++.|+|..+.+ .
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~----~ 247 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME----Y 247 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee----e
Confidence 4568999999999999999999999999999999986542 35567799999999999999999999999975 4
Q ss_pred EEEEeecC
Q 004036 448 KVRARLSR 455 (777)
Q Consensus 448 ~v~~~~~~ 455 (777)
++++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 45555554
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.75 E-value=5.9e-05 Score=84.35 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCC---CCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
..++|+|+||+..++++.|...|..||+|..|+|+--.. ....+-++||.|-+..+|++|++.|++..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 345699999999999999999999999999999985432 24456789999999999999999999999988888887
Q ss_pred CC
Q 004036 272 PS 273 (777)
Q Consensus 272 ~a 273 (777)
|.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 76
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.74 E-value=3.1e-05 Score=80.82 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=74.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCcee--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~G 265 (777)
....+|||.+||..+++++|..+|.+++.|. .|+|.+++.|+..++-|.|.|.+...|+.|+..+++..|++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4456699999999999999999999999873 47888999999999999999999999999999999999999
Q ss_pred cccccCCCCCCC
Q 004036 266 KQCGVTPSQDSD 277 (777)
Q Consensus 266 r~i~V~~a~~~~ 277 (777)
..|+|.++...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999888775443
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.73 E-value=8.1e-05 Score=76.95 Aligned_cols=76 Identities=25% Similarity=0.389 Sum_probs=66.1
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
+.|||.|||.++|-+++.++|++||.|. .|+|.++.. |+.+|-|+|.|--.+++.-|++.|++..|.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--- 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG--- 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC---
Confidence 5699999999999999999999999885 477887754 9999999999999999999999999999986
Q ss_pred eEEEEEeec
Q 004036 446 KAKVRARLS 454 (777)
Q Consensus 446 ~~~v~~~~~ 454 (777)
+.+++..+
T Consensus 211 -~~~rVerA 218 (382)
T KOG1548|consen 211 -KKLRVERA 218 (382)
T ss_pred -cEEEEehh
Confidence 44444443
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.69 E-value=1e-05 Score=85.08 Aligned_cols=148 Identities=17% Similarity=0.267 Sum_probs=112.0
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
+.||++||...++..+|..+|..... ....-.++ -.+|+||...+...|.+|++.+++..-+ .|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceee--------ecceeeccCCchhhhhhhHHhhchhhhh--cCceeec
Confidence 47899999999999999999986631 12222222 2789999999999999999998887554 3455555
Q ss_pred cccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004036 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
...-+.. ...+.+-|.|+|...-|+.|..++..||.|..|..+... .-.-..-|+|...+.++.||.+||
T Consensus 71 ~~sv~kk-------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 71 EHSVPKK-------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred cchhhHH-------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4432221 234679999999999999999999999999998764321 112245678899999999999999
Q ss_pred CCeeCCCcc
Q 004036 437 NAELGEGDN 445 (777)
Q Consensus 437 g~~~~g~~~ 445 (777)
|.+|.....
T Consensus 141 g~Q~en~~~ 149 (584)
T KOG2193|consen 141 GPQLENQHL 149 (584)
T ss_pred chHhhhhhh
Confidence 999986443
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.57 E-value=0.00022 Score=58.95 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=47.8
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 197 FEVFVGGLDKDVVGDD----LRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~----L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
..|+|.|||....... |++|+..|| .|..|. .+.|+|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4599999999988766 456777786 555541 3579999999999999999999999999999998
Q ss_pred CCCCC
Q 004036 272 PSQDS 276 (777)
Q Consensus 272 ~a~~~ 276 (777)
++...
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 77443
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.39 E-value=4.5e-05 Score=80.28 Aligned_cols=146 Identities=23% Similarity=0.386 Sum_probs=110.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC-eeeccccccCCC---
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VINGKQCGVTPS--- 273 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~Gr~i~V~~a--- 273 (777)
.|+++||...++..+|..+|...-.-..-.++. ..+||||.+.+...|.+|++.|++. .+.|+.+.|...
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 489999999999999999997652111111111 2579999999999999999999876 688999998876
Q ss_pred -CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCC
Q 004036 274 -QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (777)
Q Consensus 274 -~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (777)
...+.+-|.|+|....++-|..++..+| .+..|..+..... .-..-|++.+.+.+..|+..|++..+. ..
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~e---n~ 147 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLE---NQ 147 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhh---hh
Confidence 3457899999999999999999999999 5666655432211 222346788899999999998887663 34
Q ss_pred Cccccc
Q 004036 353 PAKVSF 358 (777)
Q Consensus 353 ~i~v~~ 358 (777)
.+++.+
T Consensus 148 ~~k~~Y 153 (584)
T KOG2193|consen 148 HLKVGY 153 (584)
T ss_pred hhhccc
Confidence 444444
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.39 E-value=0.00018 Score=74.12 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=71.8
Q ss_pred hcCCcceEEEeCCCCCCCHHHHHHHhhccC--ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004036 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 192 ~~~~~~~lfV~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~ 269 (777)
......++||+||-|.+|.++|.+.+...| .|.+++++.+..+|+++|||+|...+..+.++.++.|-..+|+|+.-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 345567899999999999999999998877 588899999999999999999999999999999999998899888766
Q ss_pred cCC
Q 004036 270 VTP 272 (777)
Q Consensus 270 V~~ 272 (777)
|..
T Consensus 156 V~~ 158 (498)
T KOG4849|consen 156 VLS 158 (498)
T ss_pred eec
Confidence 654
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00067 Score=74.37 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=59.3
Q ss_pred ceeecCCCCCCCC------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWD------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t------~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+|+|.|+|.--. ..-|..+|+++|+|+++.++.+..+| .+||.|++|.+..+|+.|++.|||+.|+-
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 7899999986522 24577899999999999999887666 89999999999999999999999999974
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.15 E-value=0.0017 Score=69.11 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=58.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeec---CCCC--C--------cccEEEEEeccHHHHHHHHHHhCC
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN---MPSA--K--------RKDFGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~---~~~g--~--------~kg~afV~F~~~~~A~~A~~~l~g 437 (777)
.+.++|.+.|||.+-.-+.|.+||..||.|..|+|... +.+. . .+-+|||+|+....|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35689999999999888999999999999999999876 3221 1 256799999999999999998866
Q ss_pred Cee
Q 004036 438 AEL 440 (777)
Q Consensus 438 ~~~ 440 (777)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 544
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.14 E-value=0.0015 Score=54.09 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=42.6
Q ss_pred ceeecCCCCCCCCHH----HHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 374 KTVFVDGLPASWDED----RVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~----dL~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..|+|.|||.+.+.. -|++++..|| .|..|. .+.|+|.|.+++.|.+|++.|+|..+.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 568999999998865 5667777885 565552 359999999999999999999999998743
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.94 E-value=0.0015 Score=58.21 Aligned_cols=59 Identities=31% Similarity=0.465 Sum_probs=39.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (777)
+.|+|.++...++-++|+++|.+||.|..|.+... ...|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56999999999999999999999999998888753 236999999999999999987543
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0012 Score=67.83 Aligned_cols=101 Identities=19% Similarity=0.388 Sum_probs=71.6
Q ss_pred eEEEeCCCCCCCHHH----H--HHHhhccCceeEEEEeeCCCCC-CCcce--EEEEecCHHHHHHHHHhccCCeeecccc
Q 004036 198 EVFVGGLDKDVVGDD----L--RKVFSQVGEVTEVRLMMNPQTK-KNKGF--AFLRFATVEQARQAVTELKNPVINGKQC 268 (777)
Q Consensus 198 ~lfV~nLp~~~te~~----L--~~~f~~~G~v~~v~i~~d~~~g-~~~g~--afV~F~s~e~A~~Al~~l~~~~~~Gr~i 268 (777)
-|||-+|+..+..++ | .++|.+||.|..|.|-+...+. ...+. .||+|.+.++|.+||...++..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999998877665 2 4799999999988776543221 12222 4999999999999999999999999999
Q ss_pred ccCCC--------------CCCCCcccccc---cccccHHHHHHHHh
Q 004036 269 GVTPS--------------QDSDTLFLGNI---CKTWTKEALKEKLK 298 (777)
Q Consensus 269 ~V~~a--------------~~~~~l~V~nL---p~~~te~~L~~~F~ 298 (777)
+...- ....++|+..- ...+|+++|...-.
T Consensus 196 katYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 196 KATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred eeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 88654 33344554332 23356777766544
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.91 E-value=0.00059 Score=68.03 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=60.7
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC--------CCccc----EEEEEeccHHHHHHHHHHhCCCeeC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS--------AKRKD----FGFVTFDTHDAAVTCAKSINNAELG 441 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~--------g~~kg----~afV~F~~~~~A~~A~~~l~g~~~~ 441 (777)
-.|||++||+.+.-..|++||..||.|-.|.|.....+ |.++. -|+|+|.+-..|..+...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 67999999999999999999999999999999876544 22222 3789999999999999999999998
Q ss_pred CC
Q 004036 442 EG 443 (777)
Q Consensus 442 g~ 443 (777)
|.
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 74
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0015 Score=50.22 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=41.5
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
+.|-|.+.+....+ .|..+|..||.|+.+.+... ..++||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46778888876654 45558889999999988732 349999999999999985
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.73 E-value=0.0064 Score=67.37 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=60.6
Q ss_pred hcCCcceEEEeCCCCCCCHHHHHHHhhc-cCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee---eccc
Q 004036 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQ 267 (777)
Q Consensus 192 ~~~~~~~lfV~nLp~~~te~~L~~~f~~-~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~---~Gr~ 267 (777)
.......|+|.||-..+|.-+|+.|+.. +|.|+.. ++|+. +..|||.|.+.++|.+.+.+|||..| +.++
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4445678999999999999999999994 5666666 44433 45699999999999999999999876 5667
Q ss_pred cccCCC
Q 004036 268 CGVTPS 273 (777)
Q Consensus 268 i~V~~a 273 (777)
|.|.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 766654
No 166
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.51 E-value=0.0071 Score=70.92 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=24.4
Q ss_pred CCcceEEEEecCHHHHHHHHHhccCCeee
Q 004036 236 KNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 236 ~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
.-+||.||+-......+.||+-+-+...+
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 46899999999999999999987765544
No 167
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.49 E-value=0.0018 Score=68.34 Aligned_cols=79 Identities=29% Similarity=0.535 Sum_probs=71.0
Q ss_pred cceEE-EeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 196 EFEVF-VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 196 ~~~lf-V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
..++| |.+|++.++.++|+.+|..+|.|+.+++.....++..++||||.|.....+..++.. +...+.++.+.|....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 33455 999999999999999999999999999999999999999999999999999999997 7888888888887654
Q ss_pred C
Q 004036 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
+
T Consensus 263 ~ 263 (285)
T KOG4210|consen 263 P 263 (285)
T ss_pred C
Confidence 3
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.44 E-value=0.0051 Score=63.42 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=57.1
Q ss_pred cceeecCCCCCCCCHHH----H--HHHhhccCCeEEEEEeecCCCCCc-ccE--EEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 373 VKTVFVDGLPASWDEDR----V--RELLKNYGEITKIELARNMPSAKR-KDF--GFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~d----L--~~~F~~~G~v~~v~i~~~~~~g~~-kg~--afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.+-|||-+|+..+-.++ | .++|.+||.|..|.|-+......+ .+. .||+|.+.++|..||..++|..++|.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 36789999999876655 3 479999999998877654311111 122 39999999999999999999999985
Q ss_pred cceEE
Q 004036 444 DNKAK 448 (777)
Q Consensus 444 ~~~~~ 448 (777)
.+++.
T Consensus 194 ~lkat 198 (480)
T COG5175 194 VLKAT 198 (480)
T ss_pred eEeee
Confidence 54444
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.013 Score=58.68 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=76.6
Q ss_pred hHHHHHHHHHcCCceeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC
Q 004036 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411 (777)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~ 411 (777)
.-|..|...|.+... .++.+.|.|+.. ..|+|.||...++.+.|...|..||.|....++.+. .
T Consensus 5 t~ae~ak~eLd~~~~---~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP---KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-R 68 (275)
T ss_pred cHHHHHHHhcCCCCC---CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-c
Confidence 345556666666544 588899988754 789999999999999999999999999876665553 5
Q ss_pred CCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 412 g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
++..+-++|+|...-.|.+|+..++..-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7888899999999999999999886655554
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.14 E-value=0.013 Score=45.14 Aligned_cols=52 Identities=19% Similarity=0.435 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHH
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al 255 (777)
+.|-|.+.+....+.-| .+|.+||.|+.+.+.. ...++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 45889999977765555 4888999999988762 2457999999999999986
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.013 Score=64.71 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=59.7
Q ss_pred CcceEEEeCCCCCCC------HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec-cc
Q 004036 195 KEFEVFVGGLDKDVV------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQ 267 (777)
Q Consensus 195 ~~~~lfV~nLp~~~t------e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~G-r~ 267 (777)
....|+|.|+|.--. ..-|..+|+++|+|+.+.+..+..+| ++||.|++|.+...|+.|++.|||..|.- ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345699999996432 34467899999999999998876654 99999999999999999999999987753 33
Q ss_pred ccc
Q 004036 268 CGV 270 (777)
Q Consensus 268 i~V 270 (777)
+.|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 333
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.05 E-value=0.019 Score=50.29 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=46.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEE-EeecC------CCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIE-LARNM------PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~-i~~~~------~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
+.|.|-+.|.. ....|.++|++||.|+... +.++. .......+..|+|.+..+|++||. .||..|.|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 55778888877 5677889999999997774 10000 001124599999999999999987 899999864
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.88 E-value=0.033 Score=65.08 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=10.7
Q ss_pred CcceEEEEecCHHHHHHHHH
Q 004036 237 NKGFAFLRFATVEQARQAVT 256 (777)
Q Consensus 237 ~~g~afV~F~s~e~A~~Al~ 256 (777)
++.|+-|-|.+..--..++.
T Consensus 469 prpyg~i~fctvgvllr~~e 488 (1282)
T KOG0921|consen 469 PRPYGSIMFCTVGVLLRMME 488 (1282)
T ss_pred cccccceeeeccchhhhhhh
Confidence 44455555666555555544
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.84 E-value=0.0077 Score=63.50 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=56.2
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..|.|.||.++++.+++..||...|+|..+.|+.+... ....-.|||.|.+...+..|.. |.++.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 47899999999999999999999999999998764322 3345689999999999999955 77777654
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.44 E-value=0.019 Score=57.64 Aligned_cols=93 Identities=19% Similarity=0.306 Sum_probs=77.0
Q ss_pred HHHHHHHHhccCCeeeccccccCCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEee
Q 004036 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328 (777)
Q Consensus 249 e~A~~Al~~l~~~~~~Gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F 328 (777)
.-|..|...|++....++.|.|.++.. ..|+|.||..-+..+.|...|..|| .|....++.+ ..++..+-++|.|
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg--~~e~av~~vD--~r~k~t~eg~v~~ 79 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFG--PIERAVAKVD--DRGKPTREGIVEF 79 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcC--ccchheeeec--ccccccccchhhh
Confidence 346677777999999999999999988 8999999999999999999999999 4544444444 4577889999999
Q ss_pred cChhHHHHHHHHHcCCce
Q 004036 329 SSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 329 ~s~e~A~~Al~~l~~~~i 346 (777)
...-.|.+|+..+....+
T Consensus 80 ~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 80 AKKPNARKAARRCREGGF 97 (275)
T ss_pred hcchhHHHHHHHhccCcc
Confidence 999999999987754433
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.37 E-value=0.037 Score=56.34 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=46.5
Q ss_pred HHHHHHHhhccCCeEEEEEeecCCCCC-cccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 387 EDRVRELLKNYGEITKIELARNMPSAK-RKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 387 ~~dL~~~F~~~G~v~~v~i~~~~~~g~-~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+++++..+.+||.|.+|.|...+.... -..-.||+|...+.|.+|+-.|||+.|+|+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 357889999999999998876643221 1235799999999999999999999998743
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.34 E-value=0.014 Score=62.48 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=55.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeC---CCC--CC--------CcceEEEEecCHHHHHHHHHhccC
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN---PQT--KK--------NKGFAFLRFATVEQARQAVTELKN 260 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d---~~~--g~--------~~g~afV~F~s~e~A~~Al~~l~~ 260 (777)
..++|.+.|||.+-..+.|.+||..+|.|..|+|+.- ..+ +. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5788999999999999999999999999999999875 222 11 245699999999999999997654
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.26 E-value=0.061 Score=50.10 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=39.8
Q ss_pred HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 388 ~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+|.+.|..||.|+-|+++.+ .-+|+|.+-..|.+|+. |+|.+|+|
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 367888999999988888755 78999999999999976 99999987
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.14 E-value=0.013 Score=64.93 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=58.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhh-ccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
..++.|+|.||-.-+|.-+|+.++. .+|.|+.++|-+- |-.|||.|.+.++|.+.+.+|||..+-.++-++-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4568999999999999999999998 5667776644322 5599999999999999999999998876554443
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.13 E-value=0.011 Score=59.37 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=48.8
Q ss_pred HHHHHHhh-ccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 388 DRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 388 ~dL~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
++|...|. +||+|+++.|..+. .-.-.|-++|.|...++|++|+..|||..|.|..+.+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 56666666 89999999776553 334578899999999999999999999999986555444
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.04 E-value=0.075 Score=44.30 Aligned_cols=56 Identities=20% Similarity=0.468 Sum_probs=41.3
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g 437 (777)
..||--.+|..+...||.++|+.||.|. |..+.+- .|||...+.+.|..|+..++-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3344444999999999999999999984 4444442 999999999999999988864
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.74 E-value=0.1 Score=41.28 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=44.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhcc---CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNY---GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~---G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l 435 (777)
..|+|.+|. +++.++|+.+|..| .....|..+.+. .|-|.|.+...|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 679999985 58889999999998 124477777664 8999999999999999765
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.66 E-value=0.099 Score=45.89 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=47.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCC-------CCCCCcceEEEEecCHHHHHHHHHhccCCeeecccc
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-------QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-------~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i 268 (777)
...|.|=+.|.. ....|.++|++||.|++..-+... ..........|+|.++.+|.+||. .|+.+|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345888888888 566788899999999877511000 001234589999999999999999 48988887544
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.28 E-value=0.098 Score=53.38 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=51.8
Q ss_pred HHHHHHHhhccCceeEEEEeeCCCCCC-CcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 210 GDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 210 e~~L~~~f~~~G~v~~v~i~~d~~~g~-~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
++++++.+.+||+|..|.|...+.... -..-.||+|...+.|.+|+-.||+..|.|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 456788999999999999987654322 233489999999999999999999999999987654
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.11 E-value=0.021 Score=57.53 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=50.6
Q ss_pred HHHHHHhh-ccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 211 DDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 211 ~~L~~~f~-~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
++|...|. +||.|..++|..+.. -...|-+||.|...++|++|+..||+.-|.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 899999998876543 456788999999999999999999999999999877654
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.89 E-value=0.14 Score=56.81 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=73.5
Q ss_pred CHHHHHHHHHhccCCeeeccccccCCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEE
Q 004036 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326 (777)
Q Consensus 247 s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV 326 (777)
+.+-...+|..+-+..++.+-.+|.+....+.|+|..||.+.-.+.|+.||..-....++.|.+... .-.||
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyI 217 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYI 217 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEE
Confidence 3445566777777888899999999998888999999999999999999999766557888887654 34899
Q ss_pred eecChhHHHHHHHHHcC
Q 004036 327 EFSSRSDAMDAFKRLQK 343 (777)
Q Consensus 327 ~F~s~e~A~~Al~~l~~ 343 (777)
+|.+..+|..|.+.|..
T Consensus 218 Tfesd~DAQqAykylre 234 (684)
T KOG2591|consen 218 TFESDTDAQQAYKYLRE 234 (684)
T ss_pred EeecchhHHHHHHHHHH
Confidence 99999999999886653
No 187
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.41 E-value=0.31 Score=57.40 Aligned_cols=30 Identities=37% Similarity=0.638 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCcCCcccccccCCCCCCCCcccCCCC
Q 004036 735 SYGSDYMPRGSDQVGGSSYSSMYPGRGVGGSSYMGSGG 772 (777)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (777)
.-|+-|-.+| |.+-+.+ ||-|++.|.++++
T Consensus 1245 npgggyrgsG----Gfgrggg----rgagggGgfg~G~ 1274 (1282)
T KOG0921|consen 1245 NPGGGYRGSG----GFGRGGG----RGAGGGGGFGGGG 1274 (1282)
T ss_pred CCCCCccCCC----CcCCCCC----CCCCCCCCCCCCC
Confidence 5555564444 3333333 4555555666443
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.05 E-value=0.16 Score=47.30 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=51.1
Q ss_pred CCcceEEEeCCCCC-----CCH----HHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004036 194 RKEFEVFVGGLDKD-----VVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 194 ~~~~~lfV~nLp~~-----~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
....||.|.=+... .-. .+|.+.|.+||.++=|+++.+ .-||+|.+-..|.+|+. +++..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 34556766655511 222 357788999999888887743 48999999999999999 7999999
Q ss_pred ccccccCCC
Q 004036 265 GKQCGVTPS 273 (777)
Q Consensus 265 Gr~i~V~~a 273 (777)
|+.|+|...
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999988653
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.94 E-value=0.28 Score=41.01 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=40.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~ 260 (777)
||--.+|..+...||.++|+.||.|. |..+.+ ..|||.+...+.|..|+..++.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 55555999999999999999999987 444433 3599999999999999987653
No 190
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.52 Score=52.80 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=54.8
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcc----CceeEEEEeeCC----------CCCC-----------------------
Q 004036 195 KEFEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMMNP----------QTKK----------------------- 236 (777)
Q Consensus 195 ~~~~lfV~nLp~~-~te~~L~~~f~~~----G~v~~v~i~~d~----------~~g~----------------------- 236 (777)
....|-|.||.|+ +...+|.-+|+.| |.|..|.|.... .+|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4456999999997 6678999988877 579999886431 0111
Q ss_pred --------------CcceEEEEecCHHHHHHHHHhccCCeeecc
Q 004036 237 --------------NKGFAFLRFATVEQARQAVTELKNPVINGK 266 (777)
Q Consensus 237 --------------~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr 266 (777)
..-||.|+|.+.+.|......++|..|...
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 123799999999999999999999887543
No 191
>PHA03169 hypothetical protein; Provisional
Probab=92.03 E-value=6.6 Score=41.94 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHh--hcCCcceeEeEEeecCCCCCCCcceEEEeecChh-HHHHHH
Q 004036 292 ALKEKLK--HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS-DAMDAF 338 (777)
Q Consensus 292 ~L~~~F~--~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e-~A~~Al 338 (777)
-|+.|-. +|+.+....|..+.+..+....-.|++.+|.... .|++.+
T Consensus 334 ~LyrLsraLqfpG~~ssgvq~lP~~p~~p~~~~y~ItVyCqsk~TaK~V~ 383 (413)
T PHA03169 334 SLYRLSRCLQFPGAVSSGVQTFPDAPGSPVIWAYCITVFCQSRGTAKAVI 383 (413)
T ss_pred HHHHHHHHhccCCeeccceeecCCCCCCCCCceeEEEEEecCcccHHHHH
Confidence 3444433 3443333445555444443344466666665444 344333
No 192
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.99 E-value=0.19 Score=61.42 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=9.8
Q ss_pred CCHHHHHHHhhccC
Q 004036 208 VVGDDLRKVFSQVG 221 (777)
Q Consensus 208 ~te~~L~~~f~~~G 221 (777)
.+.++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 45677888887664
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.80 E-value=0.84 Score=36.19 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=42.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcc---CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQV---GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~---G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l 258 (777)
+|+|.++. +++.++|+.+|..| .....|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 49999985 57888999999998 134567777653 3899999999999999864
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.71 E-value=1.1 Score=40.22 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=51.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..+.+...|..++-++|..+...+- .|..++|+++.. .++--++|+|.+..+|..-....||+.|..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666677778877776664 577888888743 345579999999999999999999999865
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.58 E-value=0.71 Score=50.54 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred ceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 374 KTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+.|-+.-.+.. -+-.+|...|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~ 437 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRF 437 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCce
Confidence 45555555666 356899999999999999988655 2389999999999987754 7888887643
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.57 E-value=0.89 Score=50.68 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=48.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhc--cCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKN--YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~--~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
..+.|.|..||..+..++|+.||+. |-+++.|.+..+. -=||+|++..||+.|.+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 3467889999999999999999975 7788899887663 45999999999999988553
No 197
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.51 E-value=0.72 Score=53.37 Aligned_cols=16 Identities=6% Similarity=0.239 Sum_probs=9.4
Q ss_pred ecCHHHHHHHHHhccC
Q 004036 245 FATVEQARQAVTELKN 260 (777)
Q Consensus 245 F~s~e~A~~Al~~l~~ 260 (777)
-.+...+.+|++++-+
T Consensus 206 ~k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445566777776533
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.27 E-value=0.44 Score=46.66 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=47.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhc-cCce---eEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHhccCCeeeccc
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQ-VGEV---TEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~-~G~v---~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~ 267 (777)
...+|.|++||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++...+..+++..|.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4457999999999999999997776 5554 23331122111 123345999999999999999999998776544
No 199
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.93 E-value=2.9 Score=49.66 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhhccCC-----eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004036 384 SWDEDRVRELLKNYGE-----ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 384 ~~t~~dL~~~F~~~G~-----v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
.++..+|..++..-+. |-.|+|..+ |.||+-... .|...+..|++..+.+..+
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~ 555 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPM 555 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCce
Confidence 4777777777766543 446777655 899997654 4778888999999987443
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.59 E-value=0.6 Score=45.77 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=46.9
Q ss_pred cceeecCCCCCCCCHHHHHHHhhc-cCCe---EEEEEeecCCC--CCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKN-YGEI---TKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~-~G~v---~~v~i~~~~~~--g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
..+|.|.+||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++..-+..++|+.|...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 368999999999999999997776 5554 33331122111 12234699999999999999999999887654
No 201
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=89.49 E-value=0.3 Score=56.34 Aligned_cols=15 Identities=0% Similarity=-0.035 Sum_probs=5.5
Q ss_pred eCCCCCCCHHHHHHH
Q 004036 202 GGLDKDVVGDDLRKV 216 (777)
Q Consensus 202 ~nLp~~~te~~L~~~ 216 (777)
..+|--+..++...+
T Consensus 961 ~d~pvFAsaeey~hl 975 (988)
T KOG2038|consen 961 NDSPVFASAEEYAHL 975 (988)
T ss_pred ccchhhhhHHHHHHH
Confidence 334433333333333
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.47 E-value=0.21 Score=56.85 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=62.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~ 272 (777)
....+|||+||...+..+-++.++..||.|..++.+. |+|..|.....+..|+..|+...++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999988877653 899999999999999999999889888887764
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.41 E-value=0.19 Score=52.83 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=58.9
Q ss_pred eEEEeCCCCCCCHHHHH---HHhhccCceeEEEEeeCCC--C-CCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004036 198 EVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQ--T-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~--~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~ 271 (777)
-+||-+|+.....+.+. +.|.+||.|..|.+..+.. . -....-++|+|...++|..||...++.++.|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888998776555543 5789999999998887652 1 1122338999999999999999999999999987765
Q ss_pred CC
Q 004036 272 PS 273 (777)
Q Consensus 272 ~a 273 (777)
..
T Consensus 159 ~g 160 (327)
T KOG2068|consen 159 LG 160 (327)
T ss_pred hC
Confidence 54
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.31 E-value=0.85 Score=49.69 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=58.6
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.|+|-.+|..++--||..|+..|- .|..|+|+++..- ++-.++|+|.+.++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47899999999999999999998875 4889999996432 34468999999999999999999999874
No 205
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.27 E-value=3.8 Score=49.05 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=10.5
Q ss_pred CCCCCCHHHHHHHhhc
Q 004036 381 LPASWDEDRVRELLKN 396 (777)
Q Consensus 381 Lp~~~t~~dL~~~F~~ 396 (777)
.|..+....|+.+|+.
T Consensus 447 ~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFEP 462 (1024)
T ss_pred CccccchHhhhhhccC
Confidence 4555667777777753
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.89 E-value=12 Score=38.89 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCC-------CCCCCcceEEEEecCHHHHHHHHH
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-------QTKKNKGFAFLRFATVEQARQAVT 256 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-------~~g~~~g~afV~F~s~e~A~~Al~ 256 (777)
+.|.+.||...++-..+...|.+||+|+.|.++.+. ..-+......+.|-+.+.+.....
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 458899999999999999999999999999999765 112344668888988876654433
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=1.9 Score=48.59 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=63.1
Q ss_pred cccceeecCCCCCC-CCHHHHHHHhhcc----CCeEEEEEeecC----------CCC-----------------------
Q 004036 371 AQVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNM----------PSA----------------------- 412 (777)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~dL~~~F~~~----G~v~~v~i~~~~----------~~g----------------------- 412 (777)
..+++|-|.||.|. +...||.-+|+.| |.|..|.|.... .+|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34589999999999 8889999999877 688888875322 011
Q ss_pred --------------CcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004036 413 --------------KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 413 --------------~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
...-||.|+|.+...|.+....++|.+|......+.++.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 123479999999999999999999999987665555543
No 208
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=87.58 E-value=1.6 Score=47.02 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=15.3
Q ss_pred CCCCCCCCccCCCCCCCcccccccCCC
Q 004036 692 LGYGGSRSSISSQDSHGLYSSRQGMGY 718 (777)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (777)
.-||++.-..+--++.+.|.++|.++-
T Consensus 348 ~t~g~ss~g~s~t~~~sty~~~st~~~ 374 (420)
T PTZ00473 348 TTYGGSSYGTSQTDSTSTYGSRSTFDS 374 (420)
T ss_pred cccCCCCcCCccccCCcccCCcccccc
Confidence 344544222355566777777777664
No 209
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=86.92 E-value=0.93 Score=57.10 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=13.3
Q ss_pred cEEEEEeccHHHHHHHHHHhCC
Q 004036 416 DFGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g 437 (777)
|+..+-|++..-+.+|+..|--
T Consensus 4409 ~~~~la~etl~lvtkals~le~ 4430 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLLEV 4430 (4600)
T ss_pred CceeeehHHHHHHHHHHHHHhh
Confidence 4555666666666666665543
No 210
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=1 Score=48.06 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=47.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCc-eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHh
Q 004036 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~ 257 (777)
-.+.|-|-++|.....+||..+|..|+. -..|+.+.+. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4567999999999999999999999975 4666666553 499999999999999984
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.59 E-value=0.53 Score=53.66 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=60.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.+..+|||+||...+..+-++.++..||.|..+.... |+|..|..+..+..|+..|+-..+++......+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4558999999999999999999999999987776543 999999999999999999999888876555555
No 212
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.67 E-value=3.5 Score=36.93 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
+.+...|.-++.++|..+...+- .|..++|+++.. .++-.++|.|.+.+.|......+||..|+
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44455555556666766666554 577888887633 36778999999999999999999987664
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.43 E-value=1.6 Score=45.11 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=46.4
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
-|-|-+++..- -.-|..+|.+||.|++.....+ -.|.+|.|.+.-+|++||. -||+.|++
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeecc
Confidence 35556676553 3567889999999977765422 3499999999999999987 78998876
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.60 E-value=0.48 Score=51.79 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=59.9
Q ss_pred CcceEEEeCCCCCC-CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 195 KEFEVFVGGLDKDV-VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~-te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
+.+.|-|.-+|+.. +-.+|..+|.+||.|..|.|-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|-|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34556677777665 45789999999999999887543 2349999999999977766 5899999999999887
Q ss_pred CCCC
Q 004036 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 6654
No 215
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=83.86 E-value=0.82 Score=57.56 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.8
Q ss_pred EEEeecChhHHHHHHHHH
Q 004036 324 AFLEFSSRSDAMDAFKRL 341 (777)
Q Consensus 324 afV~F~s~e~A~~Al~~l 341 (777)
..+.|.+..-..+|+..|
T Consensus 4411 ~~la~etl~lvtkals~l 4428 (4600)
T COG5271 4411 TVLALETLALVTKALSLL 4428 (4600)
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 334444444444444433
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.61 E-value=0.87 Score=53.23 Aligned_cols=75 Identities=15% Similarity=0.330 Sum_probs=60.1
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeec
Q 004036 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (777)
+..+.|++-..+-.-|..+|.+||.|..++..++. ..|.|+|.+.+.|..|+.+|+|+.+---+ ..+++.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g--~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTG--APSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccC--CceeEEec
Confidence 34456666677788999999999999999998874 38999999999999999999999986433 44566666
Q ss_pred CCC
Q 004036 455 RPL 457 (777)
Q Consensus 455 ~~~ 457 (777)
+..
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 543
No 217
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=81.31 E-value=2.5 Score=45.63 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=12.6
Q ss_pred HHHHHHhhccCCeEEEEEe
Q 004036 388 DRVRELLKNYGEITKIELA 406 (777)
Q Consensus 388 ~dL~~~F~~~G~v~~v~i~ 406 (777)
.+|..|+..|-.+....|.
T Consensus 202 ~EL~~F~D~Yd~~mYp~l~ 220 (420)
T PTZ00473 202 NELNNFFDKYKEHLYPPLK 220 (420)
T ss_pred HHHHHHHHHHHhhcCcccc
Confidence 5677777777766655553
No 218
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=80.97 E-value=3.7 Score=37.98 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=44.2
Q ss_pred ceeecCCCCCCCC-HH---HHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCee
Q 004036 374 KTVFVDGLPASWD-ED---RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (777)
Q Consensus 374 ~~l~V~nLp~~~t-~~---dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~ 440 (777)
.+|.|.=|..++. .+ .|...++.||.|..|.+. | +-.|.|.|.+..+|=+|+.+++...-
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCC
Confidence 5677765555532 23 455667889999999874 2 33899999999999999998877443
No 219
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=80.97 E-value=1.4 Score=47.79 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=4.1
Q ss_pred CCHHHHHH
Q 004036 208 VVGDDLRK 215 (777)
Q Consensus 208 ~te~~L~~ 215 (777)
.|.++|..
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 35555543
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.88 E-value=4.1 Score=40.15 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=40.9
Q ss_pred CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC--CCeeCC
Q 004036 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGE 442 (777)
Q Consensus 386 t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~--g~~~~g 442 (777)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|...|+ +..|.|
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g 60 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNG 60 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETT
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCC
Confidence 45789999999999888877765 2378999999999999999999 899987
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.53 E-value=3.3 Score=40.77 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=45.1
Q ss_pred CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeeccccccCCC
Q 004036 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTPS 273 (777)
Q Consensus 209 te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~Gr~i~V~~a 273 (777)
....|+++|..++.+..+.+++. -+-..|.|.+.+.|..|...|+ +..+.|..|+|-++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999999888887753 3348999999999999999999 89999999887665
No 222
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.43 E-value=1.1 Score=47.43 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=53.2
Q ss_pred ceeecCCCCCCCCHH-HHH--HHhhccCCeEEEEEeecCC--CC-CcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 374 KTVFVDGLPASWDED-RVR--ELLKNYGEITKIELARNMP--SA-KRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~-dL~--~~F~~~G~v~~v~i~~~~~--~g-~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+-+||-+|+..+-.+ .|+ ..|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+|..+.+..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 567888888875444 443 5899999999998877652 11 11223899999999999999999998887644
No 223
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=77.28 E-value=3.6 Score=38.04 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=44.9
Q ss_pred CcceEEEeCCCCCCC----HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC
Q 004036 195 KEFEVFVGGLDKDVV----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260 (777)
Q Consensus 195 ~~~~lfV~nLp~~~t----e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~ 260 (777)
.-.||.|.=|..++. ...|...++.||+|..|.+.- +..|.|.|.+..+|-+|+.+++.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC
Confidence 345677776665553 344566778899999998873 34599999999999999998765
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=77.23 E-value=1.1 Score=38.18 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=41.5
Q ss_pred EEEEecCHHHHHHHHHhccCC-eeeccccccC---------------CCCCCCCcccccccccccHHHHHHHH
Q 004036 241 AFLRFATVEQARQAVTELKNP-VINGKQCGVT---------------PSQDSDTLFLGNICKTWTKEALKEKL 297 (777)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~~-~~~Gr~i~V~---------------~a~~~~~l~V~nLp~~~te~~L~~~F 297 (777)
|+|+|.....|...++.-... .+++..+.|. .....++|.|.|||....++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 789999999999999864332 3344443332 23556889999999999999888754
No 225
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.71 E-value=7.1 Score=42.87 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=57.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~G 265 (777)
...|+|-.+|..++-.||..|+..+- .|..|+|+++.. -++-.++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999998765 589999998532 245568999999999999999999877653
No 226
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.64 E-value=4.4 Score=42.08 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=50.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccc-cccCCCCC
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ-CGVTPSQD 275 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~-i~V~~a~~ 275 (777)
|-|-++|.... .-|..+|.+||.|+++... .+-.+-+|.|.+.-+|.+||.+ |+++|+|.. |-|.+|.+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 55667766544 4577899999999876543 3345899999999999999994 888887643 34555433
No 227
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.32 E-value=13 Score=29.93 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC
Q 004036 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (777)
Q Consensus 384 ~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~ 441 (777)
.++-++|+..+.+|+ ..+|..+. .| =||.|.+..+|++|....+++.+.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 377899999999998 45555553 22 389999999999999999999885
No 228
>PHA03169 hypothetical protein; Provisional
Probab=71.15 E-value=28 Score=37.46 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=8.6
Q ss_pred ccccccccHHHHHHHHhhc
Q 004036 282 GNICKTWTKEALKEKLKHY 300 (777)
Q Consensus 282 ~nLp~~~te~~L~~~F~~~ 300 (777)
..+|.++. -+..||.++
T Consensus 294 d~iP~K~r--~r~~Ffr~~ 310 (413)
T PHA03169 294 DKVPRKYQ--ARRRFFRQV 310 (413)
T ss_pred CCCCcchh--HHHHHHHHh
Confidence 34444442 345666665
No 229
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.04 E-value=16 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=41.9
Q ss_pred CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004036 207 DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 207 ~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V 270 (777)
.++-++|+..|..|+-. .|+.++ + | -||.|.+..+|++|....+++.+..-.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999742 233332 2 2 599999999999999999998887766543
No 230
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=70.75 E-value=6.3 Score=48.42 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=11.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhc
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQ 219 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~ 219 (777)
-+.-.||.....-+|..+..+
T Consensus 1444 ev~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1444 EVELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEEecCCCcchHHHHHHHH
Confidence 344456766665555555443
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.93 E-value=4 Score=34.92 Aligned_cols=70 Identities=24% Similarity=0.268 Sum_probs=41.1
Q ss_pred EEEeecChhHHHHHHHHHcCCceeccCCCCccccccC--CCC--CCCcccccccceeecCCCCCCCCHHHHHHHhh
Q 004036 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD--SFI--DPGDEIMAQVKTVFVDGLPASWDEDRVRELLK 395 (777)
Q Consensus 324 afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~--~~~--~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~ 395 (777)
|+|+|....-|...++.- ...+.+. +..+.|.... ... ...-......++|.|.|||....++.|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~-~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLE-DCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEEC-CEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999888888632 2222222 2223222111 110 01111223458899999999999999998664
No 232
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=69.05 E-value=4 Score=47.35 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=9.6
Q ss_pred EEEEeccHHHHHHHHHHhCC
Q 004036 418 GFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 418 afV~F~~~~~A~~A~~~l~g 437 (777)
.||.-.+.+|-..|++.|-.
T Consensus 624 IFcsImsaeDyiDAFEklLk 643 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLK 643 (822)
T ss_pred heeeeecchHHHHHHHHHHh
Confidence 34444455555555554433
No 233
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=67.29 E-value=3.8 Score=47.49 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=8.7
Q ss_pred CCCCCCCHHHHHHH
Q 004036 380 GLPASWDEDRVREL 393 (777)
Q Consensus 380 nLp~~~t~~dL~~~ 393 (777)
-||-.+|+++|..+
T Consensus 551 ~~~l~vTledll~a 564 (822)
T KOG2141|consen 551 SLPLSVTLEDLLHA 564 (822)
T ss_pred hccccccHHHhhCh
Confidence 34555777777654
No 234
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.27 E-value=23 Score=29.08 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=33.4
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004036 384 SWDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 384 ~~t~~dL~~~F~~~G-----~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEE
Confidence 477888888887764 4668888766 999998665 68888899999999874433
No 235
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=65.62 E-value=4.6 Score=47.57 Aligned_cols=76 Identities=29% Similarity=0.374 Sum_probs=61.6
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004036 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
.+..+.|.+...+-.-|..+|.+|| .+..+..+++ -..|.|.|.+.+.|..|+.+|++..+... +-+.+|
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V 368 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYG--SVASAWTLRD-------LNMALVSFSSVESAILALDALQGKEVSVT-GAPSRV 368 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhc--chhhheeccc-------ccchhhhhHHHHHHHHhhhhhcCCccccc-CCceeE
Confidence 3455666777788889999999999 7777777766 67899999999999999999999987654 677777
Q ss_pred cccCCC
Q 004036 357 SFADSF 362 (777)
Q Consensus 357 ~~a~~~ 362 (777)
.|+...
T Consensus 369 ~~ak~~ 374 (1007)
T KOG4574|consen 369 SFAKTL 374 (1007)
T ss_pred Eecccc
Confidence 777543
No 236
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=62.89 E-value=14 Score=30.48 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHhhccC-----ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 206 KDVVGDDLRKVFSQVG-----EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 206 ~~~te~~L~~~f~~~G-----~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
..++..+|..++...+ .|-.|.|.. .|+||+-... .|..++..|++..+.|+.|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567788888887764 356677763 3789888765 788899999999999999988653
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.12 E-value=15 Score=37.73 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeE-EEEEeecCCCCCcccEEEEEeccH-------HHHHHHHHHhC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDTH-------DAAVTCAKSIN 436 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~-~v~i~~~~~~g~~kg~afV~F~~~-------~~A~~A~~~l~ 436 (777)
.-|+|+||+.++.-.||+..+.+.+.+- .|... -..|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4699999999999999999999887542 23222 1366899999654 45555555444
No 238
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=59.25 E-value=15 Score=36.47 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.7
Q ss_pred CcccccCCCCCccc
Q 004036 3 PRTVKRGAAGPRRT 16 (777)
Q Consensus 3 ~~~~k~~~~~~~~~ 16 (777)
|+..++.++..+|+
T Consensus 49 ~k~~~~~~~t~~rK 62 (200)
T PF03286_consen 49 PKQPKKKRPTAPRK 62 (200)
T ss_pred CCCCCCCCCCCccC
Confidence 55555555443333
No 239
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=58.18 E-value=14 Score=34.84 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=53.7
Q ss_pred cceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCC-CCcccccccceeecCCCCCC-CCHHHHHHHhhccC
Q 004036 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID-PGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYG 398 (777)
Q Consensus 321 kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~-~~~~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G 398 (777)
.++.+++|.+.+++..++. .....+. +..+.+..-++... ..........=|.|.|||.. .+++-|+.+.+.+|
T Consensus 55 ~~~fl~~F~~~~d~~~vl~---~~p~~~~-~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK---GGPWNFN-GHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCeEEEEEEeccceeEEEe---ccccccc-ccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 6789999999999998876 2222222 23333332222111 11111122234778899998 88899999999999
Q ss_pred CeEEEEEeec
Q 004036 399 EITKIELARN 408 (777)
Q Consensus 399 ~v~~v~i~~~ 408 (777)
.+..++....
T Consensus 131 ~~i~vD~~t~ 140 (153)
T PF14111_consen 131 EPIEVDENTL 140 (153)
T ss_pred CeEEEEcCCC
Confidence 9988887544
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=57.82 E-value=3.3 Score=46.41 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..+.|||.|++++++-.+|..+|..+-.+..+.+.......+..-+.+|+|.-.-....|+-+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45889999999999999999999998777777766554445556689999998888888888899988754
No 241
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=57.36 E-value=3.1e+02 Score=32.63 Aligned_cols=16 Identities=6% Similarity=0.327 Sum_probs=8.5
Q ss_pred CCCCCCHHHHHHHhhc
Q 004036 381 LPASWDEDRVRELLKN 396 (777)
Q Consensus 381 Lp~~~t~~dL~~~F~~ 396 (777)
.-|+|.++|.+-+...
T Consensus 7 ~rWDW~~ED~K~VvqR 22 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQR 22 (828)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 3455566665555443
No 242
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=56.53 E-value=9.6 Score=46.92 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=4.2
Q ss_pred EEEEEeccH
Q 004036 417 FGFVTFDTH 425 (777)
Q Consensus 417 ~afV~F~~~ 425 (777)
|+=..|++.
T Consensus 1586 ~qkMsFETt 1594 (1640)
T KOG0262|consen 1586 LQKMSFETT 1594 (1640)
T ss_pred hHhhhHHHH
Confidence 444455443
No 243
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=54.92 E-value=8.5 Score=45.60 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=7.2
Q ss_pred HHHHHhhcCCcceeEe
Q 004036 293 LKEKLKHYGVDNVEDL 308 (777)
Q Consensus 293 L~~~F~~~G~~~i~~i 308 (777)
|.+.+.+||...+.-.
T Consensus 372 l~~~a~~ygL~dl~~~ 387 (622)
T PF02724_consen 372 LEKYAPKYGLDDLVFP 387 (622)
T ss_pred HHHHHHhcCCCCceee
Confidence 3444556664333333
No 244
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.67 E-value=3.8e+02 Score=30.42 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcC
Q 004036 290 KEALKEKLKHYG 301 (777)
Q Consensus 290 e~~L~~~F~~~G 301 (777)
.+.|...|...|
T Consensus 258 ~~~l~~~L~~~g 269 (456)
T PRK10590 258 ANHLAEQLNKDG 269 (456)
T ss_pred HHHHHHHHHHCC
Confidence 345666665554
No 245
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=49.66 E-value=19 Score=39.71 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=5.9
Q ss_pred cceEEEeCCCCCC
Q 004036 196 EFEVFVGGLDKDV 208 (777)
Q Consensus 196 ~~~lfV~nLp~~~ 208 (777)
..+||-.-+.+.+
T Consensus 316 dYkvftr~fDe~v 328 (620)
T COG4547 316 DYKVFTREFDEIV 328 (620)
T ss_pred cccccchhhhhhh
Confidence 3445544444433
No 246
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=49.09 E-value=10 Score=41.90 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=8.0
Q ss_pred CCCCCcceEEEE
Q 004036 233 QTKKNKGFAFLR 244 (777)
Q Consensus 233 ~~g~~~g~afV~ 244 (777)
+-+.+.||.|-.
T Consensus 241 Ni~~FSGF~w~~ 252 (594)
T KOG2266|consen 241 NIGQFSGFVWSK 252 (594)
T ss_pred hhhcccCccccc
Confidence 346677777766
No 247
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=48.92 E-value=9.8 Score=45.08 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=5.5
Q ss_pred HHHHHHHhhcC
Q 004036 291 EALKEKLKHYG 301 (777)
Q Consensus 291 ~~L~~~F~~~G 301 (777)
..|..+|.+.|
T Consensus 337 krL~~lLAkMG 347 (622)
T PF02724_consen 337 KRLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHHhC
Confidence 34455555555
No 248
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=48.39 E-value=15 Score=38.46 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=9.2
Q ss_pred CCCcccCCCCCCCC
Q 004036 763 GGSSYMGSGGSGSY 776 (777)
Q Consensus 763 ~~~~~~~~~~~~~~ 776 (777)
|++||.||++||+|
T Consensus 258 GGgS~GGGGasg~W 271 (271)
T COG1512 258 GGGSSGGGGASGSW 271 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 33566677777776
No 249
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=47.85 E-value=18 Score=40.87 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=12.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhc
Q 004036 199 VFVGGLDKDVVGDDLRKVFSQ 219 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~ 219 (777)
.++-|++..+++..|+..+..
T Consensus 476 k~~p~~~~~v~e~~vR~~l~r 496 (555)
T KOG2393|consen 476 KTVPGSDIKVNEEAVRRYLER 496 (555)
T ss_pred ccCCCcccchhHHHHHHHHhh
Confidence 444555555666666666654
No 250
>COG4371 Predicted membrane protein [Function unknown]
Probab=47.37 E-value=28 Score=35.32 Aligned_cols=8 Identities=50% Similarity=0.601 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 004036 689 RSNLGYGG 696 (777)
Q Consensus 689 ~~~~~~~~ 696 (777)
||.=+.||
T Consensus 48 rSGGriGG 55 (334)
T COG4371 48 RSGGRIGG 55 (334)
T ss_pred hhCCCccC
Confidence 33333443
No 251
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.38 E-value=50 Score=35.87 Aligned_cols=79 Identities=11% Similarity=0.197 Sum_probs=57.9
Q ss_pred cccceeecCCCCCC-CCHHHHHHHhhcc----CCeEEEEEeecCCC----------------------------------
Q 004036 371 AQVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNMPS---------------------------------- 411 (777)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~dL~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 411 (777)
..+++|-|-||.|. +...+|..+|+.| |.|..|.|......
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 45688999999998 8889999999876 67777776422100
Q ss_pred ------C-------------------------CcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004036 412 ------A-------------------------KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 412 ------g-------------------------~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
| ...-||.|+|.+...+......++|..+......+.+
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 0 0023799999999999999999999998754433333
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.41 E-value=30 Score=37.31 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=45.0
Q ss_pred EEEEecCHHHHHHHHHhccCCeeeccccccCCCCCCCCcccccccccccHHHHHHHHh
Q 004036 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (777)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (777)
|||+|.+..+|..|++.+... ....+.|..+.+.+.|+-.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 799999999999999965443 34667889999999999999987777766665544
No 253
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.19 E-value=4 Score=45.80 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004036 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
.+.++|||.|++++.+-.+|..++..+--+..+.+.......+...+.||+|.---....|+.+||+.-+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 3466799999999999999999999987777776665544466777899999988888888888887544
No 254
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=41.98 E-value=18 Score=40.79 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=10.7
Q ss_pred ccccccccccHHHHHHHHhh
Q 004036 280 FLGNICKTWTKEALKEKLKH 299 (777)
Q Consensus 280 ~V~nLp~~~te~~L~~~F~~ 299 (777)
++-+++..+++..|+..++.
T Consensus 477 ~~p~~~~~v~e~~vR~~l~r 496 (555)
T KOG2393|consen 477 TVPGSDIKVNEEAVRRYLER 496 (555)
T ss_pred cCCCcccchhHHHHHHHHhh
Confidence 33444555566666665553
No 255
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=40.96 E-value=49 Score=35.89 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=27.0
Q ss_pred ceEEEeCCCCC-CCHHHHHHHhhcc----CceeEEEEeeC
Q 004036 197 FEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMMN 231 (777)
Q Consensus 197 ~~lfV~nLp~~-~te~~L~~~f~~~----G~v~~v~i~~d 231 (777)
..|-|-||.|+ +...+|..+|+.| |+|..|.|...
T Consensus 147 krLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 147 KRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34899999987 5667899888876 56788888753
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.07 E-value=37 Score=27.58 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCC
Q 004036 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (777)
Q Consensus 211 ~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~~ 276 (777)
++|.+.|...| .|..|.-+....++.....-||++....+.+. .++-..+++..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46778888888 57777777776667777788888877655333 34455677888888765443
No 257
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=35.44 E-value=59 Score=36.79 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 004036 427 AAVTCAKSI 435 (777)
Q Consensus 427 ~A~~A~~~l 435 (777)
++++|.+.+
T Consensus 411 Akkk~Ke~~ 419 (432)
T PF09073_consen 411 AKKKAKEKQ 419 (432)
T ss_pred HHHHHHHHh
Confidence 333333333
No 258
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.41 E-value=89 Score=32.82 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=49.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecC-------CCCCcccEEEEEeccHHHHHHHHH
Q 004036 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-------PSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~-------~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.++.|.+.||...++--.+...|-+||.|+.|.++.+. ...+......+-|-+.+.|..-..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 45789999999999999999999999999999999775 112334578999999988765543
No 259
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.41 E-value=1.3e+02 Score=24.50 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=39.2
Q ss_pred ceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCC-CCcccccccccccHHHHHHHHhhcC
Q 004036 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS-DTLFLGNICKTWTKEALKEKLKHYG 301 (777)
Q Consensus 239 g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~~-~~l~V~nLp~~~te~~L~~~F~~~G 301 (777)
.+.+|.|.+...|.+|-+.|+...+..+.+.+...-.. +.+.+.--+ ...+.+.++++..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~--~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEP--EDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEECh--hhHHHHHHHHHHCC
Confidence 36899999999999999998877666666655443222 222221111 34566777777776
No 260
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=35.19 E-value=37 Score=37.64 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=6.0
Q ss_pred eeeccccccC
Q 004036 262 VINGKQCGVT 271 (777)
Q Consensus 262 ~~~Gr~i~V~ 271 (777)
.+.|++|.|.
T Consensus 425 SMrGRpItvA 434 (620)
T COG4547 425 SMRGRPITVA 434 (620)
T ss_pred CcCCcceehh
Confidence 4566666664
No 261
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.06 E-value=76 Score=32.91 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=39.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCce-eEEEEeeCCCCCCCcceEEEEecCH-------HHHHHHHHhc
Q 004036 197 FEVFVGGLDKDVVGDDLRKVFSQVGEV-TEVRLMMNPQTKKNKGFAFLRFATV-------EQARQAVTEL 258 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v-~~v~i~~d~~~g~~~g~afV~F~s~-------e~A~~Al~~l 258 (777)
..|+|+||+.++.-.+|+..+.+.+.+ ..+.. ....+-||+.|.+. .++.+++..|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 349999999999999999999988753 33322 22366799999765 3445555544
No 262
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=34.93 E-value=28 Score=39.17 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=13.4
Q ss_pred EEEeCCCCCCCHHHHHHHh
Q 004036 199 VFVGGLDKDVVGDDLRKVF 217 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f 217 (777)
-.|..||--+..++..+++
T Consensus 801 ~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 801 NMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHhcCCcccchHHHHHHh
Confidence 5677788777777766655
No 263
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=34.48 E-value=37 Score=39.06 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=7.3
Q ss_pred cceEEEeecC
Q 004036 321 RGFAFLEFSS 330 (777)
Q Consensus 321 kg~afV~F~s 330 (777)
+||-|.+|..
T Consensus 320 rG~rFSTYA~ 329 (509)
T PRK05901 320 KGYKFSTYAT 329 (509)
T ss_pred cCCCchhhhH
Confidence 7777777765
No 264
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=33.46 E-value=29 Score=42.27 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=4.4
Q ss_pred eEEEeCCC
Q 004036 198 EVFVGGLD 205 (777)
Q Consensus 198 ~lfV~nLp 205 (777)
.+||-.+|
T Consensus 906 ~~wvl~~P 913 (1096)
T TIGR00927 906 AIYLFLLP 913 (1096)
T ss_pred eEeEEecc
Confidence 35665555
No 265
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.09 E-value=89 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCeEEEEEe
Q 004036 388 DRVRELLKNYGEITKIELA 406 (777)
Q Consensus 388 ~dL~~~F~~~G~v~~v~i~ 406 (777)
.+|+++|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766553
No 266
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=30.09 E-value=52 Score=26.73 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=42.8
Q ss_pred HHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004036 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 211 ~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~ 274 (777)
++|++.|...| .+..|..+....+......-||+.....+-.. .|+-..|+++++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 57888888877777777777888776543333 344556778888877653
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=12 Score=40.95 Aligned_cols=75 Identities=7% Similarity=-0.147 Sum_probs=60.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a 273 (777)
..|+..||..+++++|.-+|..||.|..+.+....+.+....++||...+ ..|..||..|.-..++|.+++|..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 46788899999999999999999999888877766667777788887655 5677888888777788888877665
No 268
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.44 E-value=1.7e+02 Score=30.15 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=26.3
Q ss_pred ceeecCCCCCC------------CCHHHHHHHhhccCCeEEEEEee
Q 004036 374 KTVFVDGLPAS------------WDEDRVRELLKNYGEITKIELAR 407 (777)
Q Consensus 374 ~~l~V~nLp~~------------~t~~dL~~~F~~~G~v~~v~i~~ 407 (777)
.||++.+||-. .+++-|+..|..||.|..|+|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 56676666633 35678999999999999998863
No 269
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=86 Score=34.15 Aligned_cols=53 Identities=9% Similarity=0.258 Sum_probs=42.7
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCe-EEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v-~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
..|-|-++|.....+||...|..|+.- -.|..+.+. .||-.|.+...|..|+-
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 678899999999999999999998642 234444332 89999999999999976
No 270
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=28 Score=40.21 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=5.7
Q ss_pred Cccccccccc
Q 004036 278 TLFLGNICKT 287 (777)
Q Consensus 278 ~l~V~nLp~~ 287 (777)
+|||.|+|..
T Consensus 528 ~v~l~nvP~~ 537 (754)
T KOG1980|consen 528 RVFLRNVPVS 537 (754)
T ss_pred EEEeecCcHH
Confidence 5566666543
No 271
>PF06403 Lamprin: Lamprin; InterPro: IPR009437 This family consists of several lamprin proteins from the Sea lamprey Petromyzon marinus. Lamprin, an insoluble non-collagen, non-elastin protein, is the major connective tissue component of the fibrillar extracellular matrix of lamprey annular cartilage. Although not generally homologous to any other protein, soluble lamprins contain a tandemly repeated peptide sequence (GGLGY), which is present in both silkmoth chorion proteins and spider dragline silk. Strong homologies to this repeat sequence are also present in several mammalian and avian elastins. It is thought that these proteins share a structural motif which promotes self-aggregation and fibril formation in proteins through interdigitation of hydrophobic side chains in beta-sheet/beta-turn structures, a motif that has been preserved in recognisable form over several hundred million years of evolution [].; GO: 0005198 structural molecule activity, 0005578 proteinaceous extracellular matrix
Probab=27.57 E-value=56 Score=28.13 Aligned_cols=22 Identities=45% Similarity=1.082 Sum_probs=15.7
Q ss_pred cccCCCCCCCCCCCCCCCcccc
Q 004036 713 RQGMGYGGGSYSGGDVGGMYSS 734 (777)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~ 734 (777)
-.+++|||=.++|...||.|.-
T Consensus 60 ~aglgy~glgy~g~algg~yth 81 (138)
T PF06403_consen 60 VAGLGYGGLGYPGAALGGVYTH 81 (138)
T ss_pred ccccccCccCCCcccccceeee
Confidence 4667777656777777887764
No 272
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=27.41 E-value=62 Score=29.31 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=27.5
Q ss_pred eEEEeCCCCCC---------CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHH
Q 004036 198 EVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250 (777)
Q Consensus 198 ~lfV~nLp~~~---------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~ 250 (777)
++.|.|++... ..+.|.+.|..|..+. |+.+.+. ....+++.|.|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 46677776543 4578999999998875 4444443 2568999999987643
No 273
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.36 E-value=34 Score=33.16 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=49.6
Q ss_pred eEEEeCCCCCCC-----HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc-ccccC
Q 004036 198 EVFVGGLDKDVV-----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCGVT 271 (777)
Q Consensus 198 ~lfV~nLp~~~t-----e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr-~i~V~ 271 (777)
++++.+|...+- .....++|.++.+.....+++ +.++.-|.|.+++.|..|...++...|.|+ .|+.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 366666664432 233456777766555444443 355678999999999999999999999988 66655
Q ss_pred CCCCC
Q 004036 272 PSQDS 276 (777)
Q Consensus 272 ~a~~~ 276 (777)
.++..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 55443
No 274
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.14 E-value=1.7e+02 Score=33.25 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.9
Q ss_pred HHHHhCCCee
Q 004036 431 CAKSINNAEL 440 (777)
Q Consensus 431 A~~~l~g~~~ 440 (777)
.++.+-+..+
T Consensus 359 ~ie~~l~~~~ 368 (456)
T PRK10590 359 DIEKLLKKEI 368 (456)
T ss_pred HHHHHhcCCC
Confidence 3344433333
No 275
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=37 Score=36.98 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=47.4
Q ss_pred ceeecCCCCCCCC--------HHHHHHHhhc--cCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004036 374 KTVFVDGLPASWD--------EDRVRELLKN--YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 374 ~~l~V~nLp~~~t--------~~dL~~~F~~--~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
+.+|+.++....+ .++|..+|.. ++.+..|...++.....++|..|++|.....|+++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 5566666665543 3599999999 678888888888877888999999999999999885
No 276
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=26.32 E-value=63 Score=36.40 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=7.4
Q ss_pred EEEEecCHHHHHHHHH
Q 004036 241 AFLRFATVEQARQAVT 256 (777)
Q Consensus 241 afV~F~s~e~A~~Al~ 256 (777)
-.=.|...+.|-+..+
T Consensus 212 ~HDrF~e~eQaPKSr~ 227 (694)
T KOG4264|consen 212 KHDRFDEKEQAPKSRK 227 (694)
T ss_pred ccccchhhhcCchHHH
Confidence 3344555555544333
No 277
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.04 E-value=81 Score=34.36 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=48.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCc-eeEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
.+.|.|.+||...++.+|.+.+..|-. |.-..+...... ......|||.|...++.......+++++|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456999999999999999888777643 222222221111 223567999999999988888888887654
No 278
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.24 E-value=34 Score=34.52 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=28.0
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEE
Q 004036 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~ 404 (777)
..+||+-|||..+|++.|..+..++|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 38999999999999999999999999765544
No 279
>COG4371 Predicted membrane protein [Function unknown]
Probab=25.20 E-value=94 Score=31.69 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=4.2
Q ss_pred cccCCCCCCC
Q 004036 713 RQGMGYGGGS 722 (777)
Q Consensus 713 ~~~~~~~~~~ 722 (777)
|+|...||||
T Consensus 48 rSGGriGGgS 57 (334)
T COG4371 48 RSGGRIGGGS 57 (334)
T ss_pred hhCCCccCCC
Confidence 3444444433
No 280
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=23.84 E-value=53 Score=31.91 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceeecCCCCCCCC-----HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004036 374 KTVFVDGLPASWD-----EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t-----~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+.+++.+|+..+. ......+|.+|.+.....+++. .++.-|-|.+...|..|...++...|.++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 4455666665532 2344567777776666666544 447788999999999999999999998754
No 281
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.31 E-value=2.2e+02 Score=23.78 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=39.1
Q ss_pred eecCCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004036 376 VFVDGLPASWDEDRVRELLKN-YG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 376 l~V~nLp~~~t~~dL~~~F~~-~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
-|+-.+....+..+|+..+++ |+ .|..|..+.-+. ..--|||++..-..|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 344456778999999988887 55 466666655432 234799999888888776544
No 282
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.79 E-value=59 Score=36.85 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=10.0
Q ss_pred CcccccccccccHHHHH
Q 004036 278 TLFLGNICKTWTKEALK 294 (777)
Q Consensus 278 ~l~V~nLp~~~te~~L~ 294 (777)
+|.|++|.....+..|+
T Consensus 284 ~L~vGGL~lk~QE~~LR 300 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLR 300 (691)
T ss_pred eeeecCccHHHHHHHHh
Confidence 56677776655554444
No 283
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.02 E-value=2.3e+02 Score=23.01 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=20.9
Q ss_pred ceEEEeecChhHHHHHHHHHcCCce
Q 004036 322 GFAFLEFSSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~~~~i 346 (777)
.+.+|.|.+..+|.+|-+.|+...+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3578999999999999998876554
No 284
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.93 E-value=90 Score=30.30 Aligned_cols=58 Identities=28% Similarity=0.195 Sum_probs=37.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHh
Q 004036 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTE 257 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~ 257 (777)
.++++.. +.+...++|.++.. |.+..|.+...... -..+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3445555 33334444444444 67777776653221 25788999999999999998874
No 285
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.86 E-value=4.5e+02 Score=27.28 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=40.4
Q ss_pred HHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcccccc
Q 004036 293 LKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359 (777)
Q Consensus 293 L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a 359 (777)
+.+.+...| |-.+++.+...... ..-.++.+.+.++|..++..+....+++..|...-..|.
T Consensus 85 a~~a~~~~~---ipylR~eRp~~~~~--~~~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~ 146 (249)
T PF02571_consen 85 AIEACRELG---IPYLRFERPSWQPE--PDDNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPPFV 146 (249)
T ss_pred HHHHHhhcC---cceEEEEcCCcccC--CCCeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHHHh
Confidence 444555554 66777766533221 123488999999999999888766777766766555553
No 286
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.77 E-value=2.8e+02 Score=23.58 Aligned_cols=58 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhc-cC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc
Q 004036 198 EVFVGGLDKDVVGDDLRKVFSQ-VG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~-~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l 258 (777)
..++=-+...++..+|++.+.. |+ .|..|..+..+ ....-|||.|..-..|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
No 287
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=21.62 E-value=1.3e+02 Score=27.19 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=29.7
Q ss_pred ceeecCCCCCC---------CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccH-HHHHHHHH
Q 004036 374 KTVFVDGLPAS---------WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH-DAAVTCAK 433 (777)
Q Consensus 374 ~~l~V~nLp~~---------~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~-~~A~~A~~ 433 (777)
.++.|-|++.. ++-+.|++.|..|..+. |..+.+.. -..|+++|+|... .--..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 45556666543 34578999999998875 55555543 4578999999754 44444544
No 288
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.60 E-value=85 Score=36.50 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=8.1
Q ss_pred cceEEEeCCCCCCCH
Q 004036 196 EFEVFVGGLDKDVVG 210 (777)
Q Consensus 196 ~~~lfV~nLp~~~te 210 (777)
..+||-..+...+..
T Consensus 295 ~Y~vfTt~fDe~i~A 309 (600)
T TIGR01651 295 DYKVFTTAFDETVDA 309 (600)
T ss_pred cceecchhhhhhccH
Confidence 455666655554443
No 289
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.57 E-value=87 Score=34.14 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=50.0
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCC--CCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004036 374 KTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~-v~~v~i~~~~~~--g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..|.|.+||...++.+|.+....|-. |.+..+...... ....++|+|.|...++...-...++|.+|..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 67889999999999988887776533 333344321111 2235689999999999988888899988764
No 290
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.12 E-value=72 Score=37.06 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=4.7
Q ss_pred HHHHHHHhhc
Q 004036 387 EDRVRELLKN 396 (777)
Q Consensus 387 ~~dL~~~F~~ 396 (777)
+.+|+.+...
T Consensus 542 ~~hLr~vi~~ 551 (600)
T TIGR01651 542 ERHLRAVIEE 551 (600)
T ss_pred HHHHHHHHHH
Confidence 3455554443
No 291
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=21.04 E-value=3.3e+02 Score=25.33 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCCHHHHHHHhhc-cCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC----------
Q 004036 207 DVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD---------- 275 (777)
Q Consensus 207 ~~te~~L~~~f~~-~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~Gr~i~V~~a~~---------- 275 (777)
..+-..|...+.+ .+....+.+..- ..++..+.|.+.+++..++. .....+.+..+.+..-.+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 3556666666654 233223333321 24689999999999999988 344566776666643321
Q ss_pred --CCCccccccccc-ccHHHHHHHHhhcCCcceeEeE
Q 004036 276 --SDTLFLGNICKT-WTKEALKEKLKHYGVDNVEDLT 309 (777)
Q Consensus 276 --~~~l~V~nLp~~-~te~~L~~~F~~~G~~~i~~i~ 309 (777)
.--|.|.+||.. ++++-|+.+.+..| .+..+.
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG--~~i~vD 136 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIG--EPIEVD 136 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcC--CeEEEE
Confidence 122667899976 67788899999999 444443
Done!