BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004037
(777 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 336
S DVK+ V +V+V++A+D+ +D +G +DP+ +LG R +T T K L+P+W++ F
Sbjct: 6 SGDVKD-VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVF 64
Query: 337 NIPISTWDSPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQ 378
PI D +VL + V D+D D LG I + +RDGQ
Sbjct: 65 TFPIK--DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 330
FS+ + + + ++ A +KP D NGLADPYVK L P + RTKT R T +P
Sbjct: 20 FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 79
Query: 331 KWHEEFNIPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
W+E T + L I V D+D F ++ +G+ ++ L+ QR + I L+
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
Query: 388 NI 389
+
Sbjct: 140 RV 141
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 330
FS+ + + + ++ A +KP D NGLADPYVK L P + RTKT R T +P
Sbjct: 18 FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 77
Query: 331 KWHEEFNIPISTWD--SPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
W+E T + L I V D+D F ++ +G+ ++ L+ QR + I L+
Sbjct: 78 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 137
Query: 388 NI 389
+
Sbjct: 138 RV 139
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V +A ++ P D NGL+DPYVK +L P + +TKT R TL+P+W+E F +
Sbjct: 21 VTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 80
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
D L +E+ D D +D +G + +S+L
Sbjct: 81 DKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V +A ++ P D NGL+DPYVK +L P + +TKT R TL+P+W+E F +
Sbjct: 20 VTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 79
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
D L +E+ D D +D +G + +S+L
Sbjct: 80 DKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V +A ++ P D NGL+DPYVK +L P + +TKT R TL+P+W+E F +
Sbjct: 22 VTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 81
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
D L +E+ D D +D G + +S+L
Sbjct: 82 DKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347
V V+EA+++K NG ++PY + +G + T+T + TL+PKW+ FN D +
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN--FNCQFFIKDLYQD 448
Query: 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ 378
VL + + D+D F DD LG I ++ +R Q
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 276 FSVDVKEPVA-YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLS 329
++++ P A V V EA ++ P D NGL+DPYVK +L P + +T+T + TL+
Sbjct: 10 LQLEIRAPTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLN 69
Query: 330 PKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
P W+E F + D L +EV D D +D +G + +S+L D W L N
Sbjct: 70 PVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKAP-VDGWYKLLN 128
Query: 389 IKIGRLH 395
+ G +
Sbjct: 129 QEEGEYY 135
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 343
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F +P S
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 344 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 388
+ LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 83 -AGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 127
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 154 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 213
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH 380
V +V+ V D D +D +G + + RH
Sbjct: 214 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 252
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V +A ++ P D NGL+DPYVK +L P + +TKT + +L+P+W+E F +
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386
D L +E+ D D +D +G + IS+L+ D W L
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 278
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 343
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F +P S
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 344 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 98 GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 343
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F +P S
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 344 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 81 GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 125
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 343
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F +P S
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 344 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 106 GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 343
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F +P S
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 344 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 98 GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKW 332
FSV + V++++A ++ D +G +DP+VK L P ++ TK +RK L+P W
Sbjct: 17 FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW 76
Query: 333 HEEFNIPISTWDS--PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMW 383
+E F ++ +L ++V D D F +D +G+ +I ++ + Q W
Sbjct: 77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPI 340
RV+VV D+ D+ G +DPYVK L +TKT +KTL+PKW+EEF +
Sbjct: 24 RVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRV 83
Query: 341 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
+ S + L+ EV D++ DD LG + +S L
Sbjct: 84 NP--SNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V +A ++ P D NGL+DPYVK +L P + +TKT + +L+P+W+E F +
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLR 375
D L +E+ D D +D +G + IS+L+
Sbjct: 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 127
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHE--EFNIPISTW 343
V +++A D+ D NG +DPYVK L P R F+TK RKTL+P ++E +F++P++
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTIN 370
+ L V D D F D +G ++
Sbjct: 84 -AQRKLHFSVYDFDRFSRHDLIGQVVLD 110
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 330
FS+ V +++AS++K DL G +DPYVK L + +T ++ TL+P
Sbjct: 143 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNP 202
Query: 331 KWHEEFNIPISTWDSPNV-LVIEVRDKDHFV-DDTLGDCTI 369
++E ++ NV L I V D D ++ +G C +
Sbjct: 203 TYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHE--EFNIPISTW 343
V +++A D+ D NG +DPYVK L P R F+TK RKTL+P ++E +F++P++
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTIN 370
+ L V D D F D +G ++
Sbjct: 85 -AQRKLHFSVYDFDRFSRHDLIGQVVLD 111
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 330
FS+ V +++AS++K DL G +DPYVK L + +T ++ TL+P
Sbjct: 144 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNP 203
Query: 331 KWHEEFNIPISTWDSPNV-LVIEVRDKDHFV-DDTLGDCTI 369
++E ++ NV L I V D D ++ +G C +
Sbjct: 204 TYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 344 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMWIPL---QNIKIGRLH 395
D + L I V D D +D +G C + IS G+R W ++ KI R H
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 155
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWHE 334
+ +++A ++ P D NG +DP+VK L P Y+ RTK +K+L+P+W++
Sbjct: 22 IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81
Query: 335 EFNIPISTWDS--PNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ + L + V D D F +D LG+ I++S W PL+
Sbjct: 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD 344
A + VV A ++ D G +DPYV Q+G + RTKT L+P W E F+ +
Sbjct: 17 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECH--N 74
Query: 345 SPNVLVIEVRDKDHFV------------DDTLGDCTINISDLRDGQRHDMWIPL 386
S + + + V D+D + DD LG I + L D+W L
Sbjct: 75 SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNL 126
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 288 RVEVVEASDMKPS-----DLNG------LADPYVKGQLGPYRF-RTKTQRKTLSPKWHEE 335
++++ EA +KP+ D G L DPY+ + R +T T++KT SP WH+E
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 336 FNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISD-LRDGQRH-DMWIPLQ 387
F + + V D DD + +CTI + L++G RH + WI L+
Sbjct: 69 FVTDVCNGRKIELAVF--HDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 19 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 78
Query: 344 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMW---IPLQNIKIGRLH 395
D + L I V D D +D +G C + IS G+R W + ++ KI R H
Sbjct: 79 DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 133
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 41 VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 344 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMW---IPLQNIKIGRLH 395
D + L I V D D +D +G C + IS G+R W + ++ KI R H
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 155
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 301 DLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357
D+ DPYV+ + R RT+ ++P W+E F I + NVL I + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN 95
Query: 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGT 417
+ +D+TLG T +S ++ G++ ++ + L +++ V + + CD
Sbjct: 96 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEK 155
Query: 418 LNKEGMGNKEDQSNKEDIRES 438
+ Q KE IRES
Sbjct: 156 TFR--------QQRKEHIRES 168
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 301 DLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357
D+ DPYV+ + R RT+ ++P W+E F I + NVL I + D +
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN 80
Query: 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 301 DLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357
D+ DPYV+ + R RT+ ++P W+E F I + NVL I + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN 95
Query: 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 96 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 138
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQL-GPYR-----FRTKTQRKTLSPKWHEEFNIPI 340
RV V+ + D+ G +DPYV+ L P +TKT +K+L+PKW+EE I
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE--ILF 79
Query: 341 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
+ L+ EV D++ DD LG + + L
Sbjct: 80 RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQL-GPYR-----FRTKTQRKTLSPKWHEEFNIPI 340
RV+V+ + D+ G +DPYV+ L P +TKT +K+L+PKW+EE I
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE--ILF 67
Query: 341 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
+ ++ EV D++ DD LG + + L
Sbjct: 68 RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 29 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH 380
V +V+ V D D +D +G + + RH
Sbjct: 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 127
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGL-ADPYVKGQLGP---YRFRTKTQRKTLSP 330
+FS++ V + EA + D + +DPY+K + P ++ +T+ RKTL P
Sbjct: 12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71
Query: 331 KWHEEFN---IPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINIS--DLRDGQ 378
+ E F IP T L + D F DD +G+ I +S +L +G+
Sbjct: 72 AFDETFTFYGIP-YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 22 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 81
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH 380
V +V+ V D D +D +G + + RH
Sbjct: 82 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 120
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVK------GQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
R+ V+ A ++ D L DP+ K GQ T T + TL PKW++ +++ +
Sbjct: 8 RLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC----HSTDTVKNTLDPKWNQHYDLYVG 63
Query: 342 TWDSPNVLV 350
DS + V
Sbjct: 64 KTDSITISV 72
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 21 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 80
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH 380
V +V+ V D D +D +G + + RH
Sbjct: 81 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 119
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRF-----RTKTQRKTLSPKWHEEF 336
V ++ A D+ + +PYVK P R RTKT +KTL PKW++ F
Sbjct: 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFR-----TKTQRKTLSPKWHEEFNIPISTW 343
V +++A ++K D+ G +DPYVK L R T T+++ L+P ++E F I T
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 344 D-SPNVLVIEVRDKDHFV-DDTLG 365
++I V DKD +D +G
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIG 103
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRF-----RTKTQRKTLSPKWHEEF 336
V ++ A D+ + +PYVK P R RTKT +KTL PKW++ F
Sbjct: 22 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVK------GQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
R+ V+ A ++ D L DP+ K GQ T T + TL PKW++ +++ I
Sbjct: 6 RLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQC----HSTDTVKNTLDPKWNQHYDLYIG 61
Query: 342 TWDSPNVLV 350
DS + V
Sbjct: 62 KSDSVTISV 70
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 285 AYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYRF-RTKTQRKTLSPKWH 333
Y RV + EA ++P+ + L DPY+ + R +T T++KT P ++
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 334 EEFNIPISTWDSPNVLVIEVR--DKDHFVDDTLGDCTINISDL 374
EEF ++ + V DHFV +CT+ +L
Sbjct: 89 EEFCANVTDGGHLELAVFHETPLGYDHFV----ANCTLQFQEL 127
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTL-----SPKWHEEFNIPISTWDSPNVLVIEVRDK 356
G DPYVK L P R + Q+ P +HE F P+ D L++ V ++
Sbjct: 45 GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR 102
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 301 DLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F 359
D D Y+K G FRT +P+W ++ + + L ++V D D+ +
Sbjct: 409 DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW 468
Query: 360 VDDTLGDC 367
DD LG C
Sbjct: 469 DDDLLGSC 476
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRT---KTQRKTLSPK--WHE--EFNIPIS 341
V V++A + SD++GL+DPYVK L + R KT K +P ++E F+IP
Sbjct: 34 VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93
Query: 342 TWDSPNV 348
+ + +V
Sbjct: 94 SLEEISV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,848,105
Number of Sequences: 62578
Number of extensions: 863602
Number of successful extensions: 1465
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1405
Number of HSP's gapped (non-prelim): 50
length of query: 777
length of database: 14,973,337
effective HSP length: 106
effective length of query: 671
effective length of database: 8,340,069
effective search space: 5596186299
effective search space used: 5596186299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)