Query 004037
Match_columns 777
No_of_seqs 451 out of 2252
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 2.1E-58 4.6E-63 539.4 34.8 385 6-405 152-561 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.1E-30 2.4E-35 293.0 16.8 233 273-508 155-419 (421)
3 cd04016 C2_Tollip C2 domain pr 99.8 1.2E-20 2.6E-25 178.1 15.0 114 284-400 1-121 (121)
4 cd08677 C2A_Synaptotagmin-13 C 99.8 2.1E-20 4.7E-25 175.1 11.8 110 274-386 3-118 (118)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 1.4E-19 3.1E-24 170.8 13.1 113 287-399 1-126 (126)
6 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.9E-19 1.5E-23 163.2 14.2 114 286-401 1-115 (116)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.8E-19 2.1E-23 163.8 14.3 115 286-402 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.3E-19 1.4E-23 167.5 12.9 109 286-396 1-125 (126)
9 cd08681 C2_fungal_Inn1p-like C 99.8 6.6E-19 1.4E-23 163.8 12.7 115 285-400 1-118 (118)
10 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1E-18 2.2E-23 162.5 13.8 115 285-400 1-121 (121)
11 cd08393 C2A_SLP-1_2 C2 domain 99.8 6.6E-19 1.4E-23 166.6 11.9 114 274-387 4-125 (125)
12 cd08375 C2_Intersectin C2 doma 99.8 1.8E-18 3.9E-23 166.3 14.8 119 281-400 11-135 (136)
13 cd08381 C2B_PI3K_class_II C2 d 99.8 8.1E-19 1.8E-23 165.5 12.1 111 273-386 3-121 (122)
14 cd04036 C2_cPLA2 C2 domain pre 99.8 1.6E-18 3.5E-23 161.8 13.4 113 287-400 2-117 (119)
15 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.7E-18 3.7E-23 164.0 12.6 114 274-387 4-125 (125)
16 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.1E-18 4.6E-23 163.0 13.2 116 286-401 1-126 (127)
17 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.2E-18 4.7E-23 162.0 12.8 115 273-387 4-123 (124)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.8E-18 8.2E-23 160.7 14.0 112 287-400 2-121 (121)
19 cd04024 C2A_Synaptotagmin-like 99.8 3.7E-18 8E-23 160.5 13.6 115 285-400 1-128 (128)
20 cd08680 C2_Kibra C2 domain fou 99.8 3.4E-18 7.4E-23 162.0 12.0 114 273-386 2-124 (124)
21 cd08385 C2A_Synaptotagmin-1-5- 99.8 4E-18 8.7E-23 160.0 12.4 114 274-387 5-123 (124)
22 cd08392 C2A_SLP-3 C2 domain fi 99.8 4.4E-18 9.4E-23 162.1 12.4 114 274-387 4-128 (128)
23 cd04019 C2C_MCTP_PRT_plant C2 99.8 9.1E-18 2E-22 164.1 14.8 119 286-405 1-136 (150)
24 cd04015 C2_plant_PLD C2 domain 99.8 1.4E-17 3E-22 164.2 15.8 116 284-401 6-158 (158)
25 cd08678 C2_C21orf25-like C2 do 99.8 1.2E-17 2.7E-22 157.7 14.3 114 287-404 1-123 (126)
26 cd04028 C2B_RIM1alpha C2 domai 99.8 8E-18 1.7E-22 163.8 13.3 114 272-389 18-139 (146)
27 cd08388 C2A_Synaptotagmin-4-11 99.7 7.2E-18 1.6E-22 160.3 12.3 115 273-387 4-127 (128)
28 cd04030 C2C_KIAA1228 C2 domain 99.7 1E-17 2.2E-22 157.7 12.1 115 273-387 4-127 (127)
29 cd08389 C2A_Synaptotagmin-14_1 99.7 1.3E-17 2.9E-22 157.6 12.4 115 273-388 4-124 (124)
30 cd08400 C2_Ras_p21A1 C2 domain 99.7 4.5E-17 9.7E-22 154.3 15.7 115 284-403 3-125 (126)
31 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.8E-17 6.2E-22 154.2 14.2 112 286-398 1-122 (123)
32 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.3E-17 5E-22 154.9 13.6 114 274-387 5-124 (125)
33 cd04031 C2A_RIM1alpha C2 domai 99.7 1.7E-17 3.7E-22 155.5 12.6 113 274-387 5-125 (125)
34 cd08378 C2B_MCTP_PRT_plant C2 99.7 2E-17 4.4E-22 155.7 12.9 110 286-400 1-119 (121)
35 cd08685 C2_RGS-like C2 domain 99.7 1.1E-17 2.3E-22 157.3 10.7 108 276-386 5-119 (119)
36 cd08395 C2C_Munc13 C2 domain t 99.7 2E-17 4.4E-22 155.9 12.3 102 286-388 1-112 (120)
37 cd08521 C2A_SLP C2 domain firs 99.7 2.5E-17 5.4E-22 154.0 12.4 113 274-386 3-123 (123)
38 cd04046 C2_Calpain C2 domain p 99.7 8.3E-17 1.8E-21 152.3 15.7 117 283-403 1-124 (126)
39 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.2E-17 6.9E-22 155.6 12.7 114 286-401 1-133 (133)
40 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.8E-17 1.2E-21 152.3 14.0 111 287-399 2-120 (121)
41 cd08377 C2C_MCTP_PRT C2 domain 99.7 8.6E-17 1.9E-21 149.5 14.6 112 285-400 1-118 (119)
42 cd04014 C2_PKC_epsilon C2 doma 99.7 1.2E-16 2.5E-21 152.1 15.6 114 284-402 3-130 (132)
43 cd08390 C2A_Synaptotagmin-15-1 99.7 5.2E-17 1.1E-21 152.0 12.9 114 274-387 3-122 (123)
44 cd04044 C2A_Tricalbin-like C2 99.7 8.4E-17 1.8E-21 150.3 13.6 117 284-402 1-124 (124)
45 KOG1030 Predicted Ca2+-depende 99.7 2.5E-17 5.4E-22 161.0 10.2 96 283-380 4-100 (168)
46 cd04017 C2D_Ferlin C2 domain f 99.7 2.3E-16 4.9E-21 151.0 15.2 118 286-403 2-134 (135)
47 cd04050 C2B_Synaptotagmin-like 99.7 8.4E-17 1.8E-21 147.3 11.2 100 286-388 1-102 (105)
48 cd04039 C2_PSD C2 domain prese 99.7 1.2E-16 2.7E-21 147.7 11.4 95 285-379 1-100 (108)
49 cd08384 C2B_Rabphilin_Doc2 C2 99.7 7.4E-17 1.6E-21 153.4 10.2 112 275-388 3-121 (133)
50 cd04043 C2_Munc13_fungal C2 do 99.7 3.7E-16 8E-21 147.0 14.8 115 286-403 2-123 (126)
51 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.6E-21 147.5 10.8 102 287-388 1-109 (110)
52 cd08373 C2A_Ferlin C2 domain f 99.7 3.7E-16 8.1E-21 147.6 14.3 115 291-407 2-122 (127)
53 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2E-16 4.3E-21 156.6 12.7 114 275-388 5-138 (162)
54 cd08406 C2B_Synaptotagmin-12 C 99.7 7E-17 1.5E-21 155.4 9.0 113 274-388 4-123 (136)
55 cd04010 C2B_RasA3 C2 domain se 99.7 2E-16 4.4E-21 154.4 12.0 101 286-388 1-122 (148)
56 cd04027 C2B_Munc13 C2 domain s 99.7 3.9E-16 8.5E-21 147.9 13.4 109 286-398 2-127 (127)
57 cd08407 C2B_Synaptotagmin-13 C 99.7 1.2E-16 2.7E-21 154.1 9.4 113 273-387 3-124 (138)
58 cd08382 C2_Smurf-like C2 domai 99.7 5.2E-16 1.1E-20 146.2 13.0 109 287-398 2-122 (123)
59 cd04041 C2A_fungal C2 domain f 99.7 2.8E-16 6E-21 145.4 10.1 100 285-387 1-107 (111)
60 KOG2059 Ras GTPase-activating 99.7 1.8E-16 3.9E-21 180.1 10.6 165 285-455 5-192 (800)
61 cd08402 C2B_Synaptotagmin-1 C2 99.7 2.7E-16 5.9E-21 150.4 9.8 115 274-390 4-125 (136)
62 cd04026 C2_PKC_alpha_gamma C2 99.7 8.1E-16 1.8E-20 145.9 12.3 117 275-394 5-127 (131)
63 cd08404 C2B_Synaptotagmin-4 C2 99.7 3.2E-16 7E-21 149.9 9.5 113 274-388 4-123 (136)
64 cd08394 C2A_Munc13 C2 domain f 99.7 1.3E-15 2.7E-20 144.6 13.1 104 285-394 2-110 (127)
65 cd04018 C2C_Ferlin C2 domain t 99.6 9.4E-16 2E-20 150.1 11.9 106 287-392 2-129 (151)
66 cd08405 C2B_Synaptotagmin-7 C2 99.6 4.4E-16 9.5E-21 148.9 8.8 113 274-388 4-123 (136)
67 cd08403 C2B_Synaptotagmin-3-5- 99.6 5.4E-16 1.2E-20 148.0 9.3 113 274-388 3-122 (134)
68 cd08408 C2B_Synaptotagmin-14_1 99.6 5.4E-16 1.2E-20 149.6 9.1 115 273-388 3-125 (138)
69 cd08676 C2A_Munc13-like C2 dom 99.6 1.7E-15 3.6E-20 148.7 11.8 102 280-386 23-153 (153)
70 cd00276 C2B_Synaptotagmin C2 d 99.6 1E-15 2.2E-20 144.9 9.9 115 274-390 3-124 (134)
71 cd08410 C2B_Synaptotagmin-17 C 99.6 1E-15 2.2E-20 146.7 9.5 114 274-388 3-123 (135)
72 cd08692 C2B_Tac2-N C2 domain s 99.6 1.2E-15 2.5E-20 146.5 9.8 113 274-387 3-122 (135)
73 cd08409 C2B_Synaptotagmin-15 C 99.6 1.2E-15 2.6E-20 146.8 9.8 115 274-389 4-125 (137)
74 cd04045 C2C_Tricalbin-like C2 99.6 4.7E-15 1E-19 139.5 13.2 107 285-394 1-109 (120)
75 cd04049 C2_putative_Elicitor-r 99.6 5.9E-15 1.3E-19 138.7 13.8 105 285-389 1-109 (124)
76 cd04009 C2B_Munc13-like C2 dom 99.6 2.2E-15 4.7E-20 143.9 10.9 103 274-376 5-118 (133)
77 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5E-15 1.1E-19 139.0 12.7 113 274-386 4-123 (123)
78 cd04052 C2B_Tricalbin-like C2 99.6 4.6E-15 1E-19 137.4 12.2 100 302-402 9-110 (111)
79 cd04032 C2_Perforin C2 domain 99.6 3.6E-15 7.9E-20 142.0 11.7 94 281-375 24-118 (127)
80 cd04011 C2B_Ferlin C2 domain s 99.6 4.5E-15 9.8E-20 137.1 11.8 101 284-388 3-110 (111)
81 cd04051 C2_SRC2_like C2 domain 99.6 3.1E-15 6.8E-20 140.6 10.6 111 286-396 1-125 (125)
82 KOG0696 Serine/threonine prote 99.6 3.9E-16 8.5E-21 169.1 4.6 115 278-393 173-293 (683)
83 cd08690 C2_Freud-1 C2 domain f 99.6 1.2E-14 2.7E-19 142.7 14.7 118 285-402 4-138 (155)
84 cd04040 C2D_Tricalbin-like C2 99.6 1E-14 2.2E-19 134.9 12.5 101 287-388 1-103 (115)
85 PLN03008 Phospholipase D delta 99.6 8.2E-15 1.8E-19 172.4 14.1 122 283-406 12-182 (868)
86 cd04038 C2_ArfGAP C2 domain pr 99.6 1.9E-14 4.2E-19 140.0 13.8 93 284-379 1-94 (145)
87 cd08675 C2B_RasGAP C2 domain s 99.6 1E-14 2.2E-19 140.4 11.4 102 287-389 1-121 (137)
88 cd08383 C2A_RasGAP C2 domain ( 99.6 3E-14 6.5E-19 131.9 14.0 108 287-400 2-117 (117)
89 cd04037 C2E_Ferlin C2 domain f 99.6 2.2E-14 4.8E-19 135.5 11.5 115 286-402 1-120 (124)
90 cd04021 C2_E3_ubiquitin_ligase 99.5 5E-14 1.1E-18 133.3 12.9 110 285-398 2-124 (125)
91 cd04013 C2_SynGAP_like C2 doma 99.5 1.1E-13 2.4E-18 134.7 14.7 113 284-403 10-141 (146)
92 cd08686 C2_ABR C2 domain in th 99.5 7.9E-14 1.7E-18 130.7 12.7 93 287-387 1-108 (118)
93 cd08691 C2_NEDL1-like C2 domai 99.5 1.2E-13 2.6E-18 133.2 13.9 109 286-398 2-136 (137)
94 cd08692 C2B_Tac2-N C2 domain s 99.5 8.8E-15 1.9E-19 140.4 4.3 111 393-507 2-135 (135)
95 cd04048 C2A_Copine C2 domain f 99.5 9.8E-14 2.1E-18 129.9 10.2 96 291-387 6-113 (120)
96 PLN03200 cellulose synthase-in 99.5 6.7E-14 1.5E-18 177.7 11.0 118 283-402 1978-2101(2102)
97 cd00275 C2_PLC_like C2 domain 99.5 5.5E-13 1.2E-17 125.2 13.5 111 286-400 3-127 (128)
98 KOG1013 Synaptic vesicle prote 99.4 4.8E-14 1E-18 149.5 2.4 235 273-510 81-356 (362)
99 cd08407 C2B_Synaptotagmin-13 C 99.4 9.9E-14 2.2E-18 134.0 3.8 113 391-507 1-137 (138)
100 cd04047 C2B_Copine C2 domain s 99.4 1.5E-12 3.2E-17 119.8 10.5 89 289-378 4-102 (110)
101 PF00168 C2: C2 domain; Inter 99.3 7E-12 1.5E-16 107.8 7.7 81 287-368 1-85 (85)
102 KOG1011 Neurotransmitter relea 99.3 6.6E-12 1.4E-16 141.0 8.6 189 284-508 294-508 (1283)
103 cd00030 C2 C2 domain. The C2 d 99.2 1E-10 2.3E-15 101.4 10.8 99 287-386 1-102 (102)
104 KOG1028 Ca2+-dependent phospho 99.2 3.2E-11 7E-16 136.3 9.4 113 273-387 286-405 (421)
105 cd08406 C2B_Synaptotagmin-12 C 99.2 1E-11 2.2E-16 119.7 3.7 112 392-507 2-135 (136)
106 smart00239 C2 Protein kinase C 99.2 1.9E-10 4E-15 100.8 10.7 94 287-381 2-99 (101)
107 cd08374 C2F_Ferlin C2 domain s 99.1 2.6E-10 5.6E-15 109.6 9.7 93 287-379 2-126 (133)
108 COG5038 Ca2+-dependent lipid-b 99.1 4.1E-10 9E-15 135.1 11.5 108 281-389 1036-1145(1227)
109 PLN02270 phospholipase D alpha 99.1 1.2E-09 2.5E-14 129.4 14.5 120 284-405 7-152 (808)
110 cd08409 C2B_Synaptotagmin-15 C 99.0 1.4E-10 3.1E-15 111.6 3.5 113 391-507 1-136 (137)
111 PLN02223 phosphoinositide phos 99.0 4.1E-09 8.8E-14 120.6 13.5 112 285-400 409-536 (537)
112 KOG1328 Synaptic vesicle prote 98.9 9.9E-10 2.2E-14 125.6 4.5 101 276-376 938-1049(1103)
113 cd08408 C2B_Synaptotagmin-14_1 98.9 7.8E-10 1.7E-14 106.8 2.8 114 392-507 2-137 (138)
114 PLN02952 phosphoinositide phos 98.9 2E-08 4.3E-13 117.0 13.8 101 284-388 469-581 (599)
115 KOG1328 Synaptic vesicle prote 98.8 1.3E-09 2.8E-14 124.7 2.5 124 282-407 111-307 (1103)
116 cd08410 C2B_Synaptotagmin-17 C 98.8 3.3E-09 7.1E-14 101.8 3.3 113 392-507 1-135 (135)
117 PLN02230 phosphoinositide phos 98.7 5.5E-08 1.2E-12 113.2 12.3 113 284-400 468-597 (598)
118 cd08402 C2B_Synaptotagmin-1 C2 98.7 5.6E-09 1.2E-13 99.9 3.2 112 391-506 1-134 (136)
119 cd08403 C2B_Synaptotagmin-3-5- 98.7 6.4E-09 1.4E-13 99.3 3.1 111 392-506 1-133 (134)
120 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5.6E-08 1.2E-12 89.3 7.6 85 287-377 1-89 (109)
121 PLN02222 phosphoinositide phos 98.7 1.7E-07 3.8E-12 109.0 13.6 101 284-388 451-563 (581)
122 KOG0169 Phosphoinositide-speci 98.7 8.2E-08 1.8E-12 112.1 10.7 112 286-401 617-744 (746)
123 cd08404 C2B_Synaptotagmin-4 C2 98.6 1.8E-08 3.8E-13 96.6 3.8 113 391-507 1-135 (136)
124 cd08677 C2A_Synaptotagmin-13 C 98.6 2.5E-08 5.3E-13 94.0 4.7 79 392-474 1-92 (118)
125 PLN02228 Phosphoinositide phos 98.6 1.6E-07 3.5E-12 108.9 12.3 115 285-403 431-563 (567)
126 KOG1031 Predicted Ca2+-depende 98.6 1.2E-07 2.5E-12 106.6 8.8 116 285-400 3-135 (1169)
127 cd08405 C2B_Synaptotagmin-7 C2 98.6 3.1E-08 6.6E-13 94.8 3.8 113 391-507 1-135 (136)
128 KOG1264 Phospholipase C [Lipid 98.5 2.6E-07 5.7E-12 107.2 9.3 113 285-402 1065-1190(1267)
129 KOG0905 Phosphoinositide 3-kin 98.4 3.6E-07 7.9E-12 109.5 6.7 114 273-388 1514-1635(1639)
130 cd08384 C2B_Rabphilin_Doc2 C2 98.3 2.7E-07 5.9E-12 87.8 3.1 93 410-506 34-132 (133)
131 PLN02352 phospholipase D epsil 98.3 2.7E-06 5.9E-11 101.2 12.0 115 283-405 8-134 (758)
132 PF10296 DUF2404: Putative int 98.3 1.1E-06 2.5E-11 79.0 6.3 84 79-166 1-86 (91)
133 cd00276 C2B_Synaptotagmin C2 d 98.3 5E-07 1.1E-11 85.4 2.9 112 392-507 1-134 (134)
134 KOG2059 Ras GTPase-activating 98.2 1.4E-06 3E-11 100.7 6.5 117 286-403 132-278 (800)
135 KOG1013 Synaptic vesicle prote 98.2 1.9E-06 4E-11 92.6 5.6 108 275-384 223-337 (362)
136 KOG1326 Membrane-associated pr 98.0 3.1E-06 6.8E-11 100.9 4.2 88 284-372 612-702 (1105)
137 KOG1011 Neurotransmitter relea 97.8 4.7E-05 1E-09 87.1 8.6 104 284-388 1124-1237(1283)
138 cd04029 C2A_SLP-4_5 C2 domain 97.7 2.2E-05 4.7E-10 74.5 3.6 78 391-471 1-95 (125)
139 cd08392 C2A_SLP-3 C2 domain fi 97.7 3.8E-05 8.2E-10 73.4 4.0 79 391-472 1-96 (128)
140 cd04020 C2B_SLP_1-2-3-4 C2 dom 97.6 4.1E-05 8.8E-10 76.1 4.2 91 410-504 48-158 (162)
141 cd08393 C2A_SLP-1_2 C2 domain 97.6 3.6E-05 7.9E-10 72.9 3.5 78 391-471 1-95 (125)
142 cd08680 C2_Kibra C2 domain fou 97.6 4.1E-05 8.9E-10 72.9 3.4 77 393-472 2-95 (124)
143 PLN02964 phosphatidylserine de 97.5 9.8E-05 2.1E-09 87.5 5.2 90 282-379 51-142 (644)
144 KOG4269 Rac GTPase-activating 97.5 4.1E-05 8.8E-10 90.6 1.7 172 283-486 757-951 (1112)
145 cd04028 C2B_RIM1alpha C2 domai 97.4 0.00034 7.4E-09 68.6 7.2 57 410-472 51-108 (146)
146 cd08381 C2B_PI3K_class_II C2 d 97.4 0.00014 3.1E-09 68.7 4.3 60 410-472 33-93 (122)
147 KOG2060 Rab3 effector RIM1 and 97.3 0.00018 4E-09 78.8 3.8 120 253-388 251-379 (405)
148 cd08389 C2A_Synaptotagmin-14_1 97.2 0.00037 8E-09 66.0 4.3 75 391-471 2-93 (124)
149 cd04030 C2C_KIAA1228 C2 domain 97.2 0.00036 7.9E-09 65.5 4.2 78 391-471 2-95 (127)
150 cd08385 C2A_Synaptotagmin-1-5- 97.1 0.00039 8.5E-09 65.2 4.0 76 391-471 2-93 (124)
151 cd08683 C2_C2cd3 C2 domain fou 97.1 0.00052 1.1E-08 65.5 4.5 100 287-386 1-143 (143)
152 cd08387 C2A_Synaptotagmin-8 C2 97.1 0.00046 1E-08 64.8 4.1 76 391-471 2-93 (124)
153 KOG1326 Membrane-associated pr 97.1 0.00014 3E-09 87.3 0.6 123 275-398 195-329 (1105)
154 cd08388 C2A_Synaptotagmin-4-11 97.1 0.00041 8.8E-09 66.1 3.4 75 391-470 2-94 (128)
155 cd08685 C2_RGS-like C2 domain 97.0 0.0005 1.1E-08 64.8 2.9 59 410-472 32-90 (119)
156 cd08684 C2A_Tac2-N C2 domain f 96.9 0.0014 3E-08 58.8 5.2 96 288-385 2-102 (103)
157 cd04031 C2A_RIM1alpha C2 domai 96.9 0.001 2.2E-08 62.2 4.8 78 391-471 2-96 (125)
158 cd08521 C2A_SLP C2 domain firs 96.9 0.00076 1.6E-08 62.9 3.5 44 428-471 51-94 (123)
159 KOG3837 Uncharacterized conser 96.5 0.0025 5.4E-08 70.7 4.2 120 283-402 365-504 (523)
160 cd08386 C2A_Synaptotagmin-7 C2 96.4 0.0035 7.6E-08 58.8 4.5 75 391-470 2-93 (125)
161 cd08390 C2A_Synaptotagmin-15-1 96.4 0.002 4.4E-08 60.1 2.5 42 430-471 51-92 (123)
162 KOG1327 Copine [Signal transdu 96.3 0.017 3.7E-07 66.8 9.9 130 317-447 41-192 (529)
163 KOG1452 Predicted Rho GTPase-a 96.2 0.0047 1E-07 66.4 4.4 119 280-402 46-168 (442)
164 cd04009 C2B_Munc13-like C2 dom 96.2 0.0054 1.2E-07 58.6 4.2 79 391-470 2-98 (133)
165 cd08395 C2C_Munc13 C2 domain t 96.1 0.0029 6.3E-08 60.0 2.1 69 409-478 19-91 (120)
166 cd08690 C2_Freud-1 C2 domain f 96.1 0.0071 1.5E-07 60.0 4.7 78 391-471 3-89 (155)
167 KOG1327 Copine [Signal transdu 95.7 0.025 5.4E-07 65.5 7.5 86 290-376 141-236 (529)
168 cd04035 C2A_Rabphilin_Doc2 C2 95.5 0.013 2.7E-07 55.0 3.7 77 392-471 2-95 (123)
169 KOG0696 Serine/threonine prote 95.5 0.0096 2.1E-07 66.6 3.3 61 410-475 201-262 (683)
170 PF15627 CEP76-C2: CEP76 C2 do 95.3 0.18 3.9E-06 50.1 11.0 123 282-404 6-153 (156)
171 PF12416 DUF3668: Cep120 prote 94.5 0.32 6.9E-06 54.2 11.6 116 287-405 2-136 (340)
172 KOG1265 Phospholipase C [Lipid 94.3 0.075 1.6E-06 64.0 6.5 89 284-379 702-799 (1189)
173 cd04010 C2B_RasA3 C2 domain se 94.0 0.029 6.3E-07 55.2 2.0 59 410-471 19-90 (148)
174 cd08398 C2_PI3K_class_I_alpha 93.9 0.33 7.2E-06 48.4 9.3 103 285-402 8-123 (158)
175 cd08693 C2_PI3K_class_I_beta_d 93.8 0.33 7.2E-06 49.0 9.1 103 285-400 8-135 (173)
176 cd04041 C2A_fungal C2 domain f 93.6 0.089 1.9E-06 48.6 4.3 58 409-471 22-80 (111)
177 cd08691 C2_NEDL1-like C2 domai 92.8 0.12 2.6E-06 50.2 4.0 39 429-471 45-84 (137)
178 cd04026 C2_PKC_alpha_gamma C2 92.5 0.27 5.8E-06 46.5 6.0 42 429-471 50-91 (131)
179 cd08380 C2_PI3K_like C2 domain 92.3 0.72 1.6E-05 45.4 8.9 102 286-399 9-121 (156)
180 cd08675 C2B_RasGAP C2 domain s 92.2 0.27 5.8E-06 47.5 5.6 100 410-523 19-134 (137)
181 cd08375 C2_Intersectin C2 doma 91.8 0.27 5.8E-06 47.5 5.2 52 409-470 35-86 (136)
182 cd08686 C2_ABR C2 domain in th 91.4 0.17 3.6E-06 48.1 3.2 41 410-453 15-55 (118)
183 cd04017 C2D_Ferlin C2 domain f 91.1 0.33 7.1E-06 46.4 4.9 85 410-508 22-116 (135)
184 cd08682 C2_Rab11-FIP_classI C2 90.9 0.17 3.6E-06 47.7 2.7 54 410-471 20-76 (126)
185 cd08401 C2A_RasA2_RasA3 C2 dom 90.8 0.15 3.4E-06 48.0 2.3 53 410-472 22-74 (121)
186 PF10358 NT-C2: N-terminal C2 90.7 4.5 9.7E-05 38.7 12.4 118 284-405 6-139 (143)
187 cd04050 C2B_Synaptotagmin-like 90.5 0.31 6.8E-06 44.4 4.0 52 410-471 21-72 (105)
188 cd08397 C2_PI3K_class_III C2 d 90.2 1 2.2E-05 45.0 7.6 90 304-404 28-126 (159)
189 cd04018 C2C_Ferlin C2 domain t 90.0 0.22 4.8E-06 49.2 2.7 81 410-499 35-129 (151)
190 cd04011 C2B_Ferlin C2 domain s 89.5 0.27 5.9E-06 45.2 2.8 54 410-471 21-76 (111)
191 cd04012 C2A_PI3K_class_II C2 d 89.4 1.4 3E-05 44.3 7.9 107 285-402 8-136 (171)
192 cd08399 C2_PI3K_class_I_gamma 89.4 3.5 7.6E-05 42.0 10.8 105 286-402 11-139 (178)
193 cd04036 C2_cPLA2 C2 domain pre 89.2 0.34 7.4E-06 45.0 3.2 56 410-472 21-76 (119)
194 cd04048 C2A_Copine C2 domain f 89.1 0.27 5.8E-06 45.9 2.4 58 410-470 21-78 (120)
195 cd08687 C2_PKN-like C2 domain 88.9 3.1 6.8E-05 37.9 8.9 84 305-400 8-92 (98)
196 cd04019 C2C_MCTP_PRT_plant C2 88.8 0.68 1.5E-05 45.5 5.2 85 409-508 20-107 (150)
197 cd08681 C2_fungal_Inn1p-like C 88.5 0.56 1.2E-05 43.4 4.1 53 410-472 22-75 (118)
198 cd04032 C2_Perforin C2 domain 88.4 0.56 1.2E-05 45.0 4.1 51 410-470 48-99 (127)
199 cd04016 C2_Tollip C2 domain pr 88.3 0.66 1.4E-05 44.1 4.6 68 392-470 2-72 (121)
200 cd08400 C2_Ras_p21A1 C2 domain 88.3 0.84 1.8E-05 43.2 5.2 51 410-470 22-72 (126)
201 cd04015 C2_plant_PLD C2 domain 88.0 0.38 8.2E-06 47.7 2.8 80 410-499 58-143 (158)
202 cd08688 C2_KIAA0528-like C2 do 88.0 0.28 6.1E-06 45.2 1.8 54 410-471 21-75 (110)
203 cd04037 C2E_Ferlin C2 domain f 87.5 0.64 1.4E-05 43.9 3.9 84 409-500 20-107 (124)
204 cd04039 C2_PSD C2 domain prese 87.0 0.4 8.7E-06 44.4 2.2 53 410-471 26-78 (108)
205 cd04022 C2A_MCTP_PRT_plant C2 86.7 0.5 1.1E-05 44.5 2.7 54 410-471 21-75 (127)
206 cd08684 C2A_Tac2-N C2 domain f 86.5 0.24 5.3E-06 44.8 0.4 62 431-492 37-102 (103)
207 cd08383 C2A_RasGAP C2 domain ( 86.2 0.62 1.4E-05 42.7 3.0 55 410-472 18-72 (117)
208 cd04038 C2_ArfGAP C2 domain pr 85.6 0.83 1.8E-05 44.8 3.6 51 409-470 21-71 (145)
209 cd08378 C2B_MCTP_PRT_plant C2 85.5 1.1 2.4E-05 42.2 4.3 52 410-471 17-68 (121)
210 cd08373 C2A_Ferlin C2 domain f 85.3 0.76 1.7E-05 43.2 3.2 54 410-471 15-68 (127)
211 cd04014 C2_PKC_epsilon C2 doma 85.1 1.3 2.8E-05 42.0 4.6 50 410-470 35-84 (132)
212 cd08379 C2D_MCTP_PRT_plant C2 85.0 0.52 1.1E-05 45.1 1.9 52 409-471 23-74 (126)
213 KOG3532 Predicted protein kina 84.9 3.3 7.2E-05 49.3 8.6 186 115-316 146-358 (1051)
214 cd08678 C2_C21orf25-like C2 do 84.3 0.71 1.5E-05 43.5 2.5 55 409-472 17-71 (126)
215 cd04024 C2A_Synaptotagmin-like 83.2 1.7 3.8E-05 40.4 4.6 53 409-471 23-75 (128)
216 cd08376 C2B_MCTP_PRT C2 domain 83.1 0.82 1.8E-05 42.1 2.3 52 410-471 21-72 (116)
217 cd08391 C2A_C2C_Synaptotagmin_ 83.1 1.6 3.6E-05 40.1 4.4 53 410-472 28-80 (121)
218 KOG0905 Phosphoinositide 3-kin 83.0 1.1 2.5E-05 55.9 4.0 91 391-486 1512-1621(1639)
219 PF00792 PI3K_C2: Phosphoinosi 82.9 4.1 8.9E-05 39.5 7.2 69 320-399 23-99 (142)
220 smart00142 PI3K_C2 Phosphoinos 81.1 7.3 0.00016 35.6 7.7 71 287-357 13-91 (100)
221 cd04033 C2_NEDD4_NEDD4L C2 dom 80.4 1.6 3.6E-05 41.1 3.4 58 409-470 20-77 (133)
222 cd04043 C2_Munc13_fungal C2 do 80.1 1.7 3.7E-05 40.6 3.3 54 410-470 22-75 (126)
223 cd04044 C2A_Tricalbin-like C2 78.4 2.7 5.8E-05 38.9 4.0 53 410-471 24-76 (124)
224 cd04025 C2B_RasA1_RasA4 C2 dom 77.8 2.2 4.7E-05 39.8 3.3 51 410-470 21-71 (123)
225 cd04045 C2C_Tricalbin-like C2 77.6 2.7 5.9E-05 39.5 3.9 52 409-470 21-72 (120)
226 PF14429 DOCK-C2: C2 domain in 77.5 7 0.00015 39.6 7.1 75 317-402 59-138 (184)
227 cd04049 C2_putative_Elicitor-r 75.3 3.6 7.8E-05 38.4 4.0 53 410-470 22-76 (124)
228 cd04042 C2A_MCTP_PRT C2 domain 75.0 2.1 4.6E-05 39.9 2.4 53 410-472 21-73 (121)
229 cd04054 C2A_Rasal1_RasA4 C2 do 74.9 2.7 5.9E-05 39.3 3.1 51 410-470 21-71 (121)
230 cd04052 C2B_Tricalbin-like C2 74.6 2.2 4.7E-05 39.4 2.3 53 410-471 13-65 (111)
231 cd08394 C2A_Munc13 C2 domain f 73.4 8.2 0.00018 37.3 5.9 48 411-470 21-68 (127)
232 KOG1030 Predicted Ca2+-depende 73.0 2.5 5.5E-05 42.5 2.4 57 408-475 25-81 (168)
233 PLN03008 Phospholipase D delta 72.7 4 8.6E-05 50.4 4.4 88 409-507 76-173 (868)
234 cd08694 C2_Dock-A C2 domains f 72.2 26 0.00057 36.3 9.6 56 317-372 53-114 (196)
235 cd04047 C2B_Copine C2 domain s 70.9 3.7 8.1E-05 37.4 3.0 60 409-471 20-81 (110)
236 cd04013 C2_SynGAP_like C2 doma 70.9 9.7 0.00021 37.6 5.9 38 410-454 27-64 (146)
237 cd04021 C2_E3_ubiquitin_ligase 70.8 6 0.00013 37.3 4.4 52 410-472 22-73 (125)
238 PF15625 CC2D2AN-C2: CC2D2A N- 70.5 17 0.00037 36.5 7.8 70 305-376 36-108 (168)
239 cd08382 C2_Smurf-like C2 domai 67.8 3.9 8.4E-05 38.4 2.4 51 410-471 21-71 (123)
240 PLN03200 cellulose synthase-in 67.2 5.7 0.00012 53.6 4.5 70 391-470 1979-2051(2102)
241 cd08697 C2_Dock-D C2 domains f 67.0 97 0.0021 31.9 12.4 57 317-373 56-123 (185)
242 cd08374 C2F_Ferlin C2 domain s 66.8 2.6 5.6E-05 40.9 1.0 39 410-453 25-65 (133)
243 cd04051 C2_SRC2_like C2 domain 66.2 6.6 0.00014 36.6 3.6 70 410-486 21-95 (125)
244 cd08695 C2_Dock-B C2 domains f 65.9 14 0.00031 38.0 6.2 56 317-372 53-112 (189)
245 cd04027 C2B_Munc13 C2 domain s 65.2 4.5 9.8E-05 38.2 2.3 50 410-470 22-71 (127)
246 cd08679 C2_DOCK180_related C2 64.3 22 0.00047 35.9 7.1 56 317-373 53-115 (178)
247 KOG1329 Phospholipase D1 [Lipi 63.7 16 0.00036 45.2 7.1 98 306-405 138-244 (887)
248 cd08377 C2C_MCTP_PRT C2 domain 62.1 7.9 0.00017 35.6 3.3 51 410-471 22-72 (119)
249 cd04040 C2D_Tricalbin-like C2 62.0 5.2 0.00011 36.6 2.0 52 410-470 20-71 (115)
250 cd08696 C2_Dock-C C2 domains f 58.5 30 0.00065 35.4 6.9 56 317-372 54-117 (179)
251 PF00168 C2: C2 domain; Inter 58.5 5.2 0.00011 33.6 1.3 40 429-470 34-73 (85)
252 PTZ00447 apical membrane antig 57.5 76 0.0017 35.6 10.1 112 281-399 54-171 (508)
253 cd08676 C2A_Munc13-like C2 dom 56.8 8.2 0.00018 38.3 2.5 39 430-470 90-128 (153)
254 cd04046 C2_Calpain C2 domain p 56.1 8 0.00017 36.4 2.2 35 410-452 24-58 (126)
255 cd00275 C2_PLC_like C2 domain 51.8 13 0.00027 34.5 2.8 59 410-472 25-84 (128)
256 KOG0694 Serine/threonine prote 50.9 4.9 0.00011 48.3 -0.2 93 305-402 27-122 (694)
257 smart00239 C2 Protein kinase C 46.1 22 0.00047 30.3 3.2 41 429-471 35-75 (101)
258 PLN02223 phosphoinositide phos 44.5 16 0.00035 43.3 2.7 55 410-470 435-490 (537)
259 PF06219 DUF1005: Protein of u 43.0 2E+02 0.0043 33.3 10.7 59 347-405 95-171 (460)
260 PF11618 DUF3250: Protein of u 41.7 77 0.0017 29.7 6.3 92 309-401 2-105 (107)
261 PF11808 DUF3329: Domain of un 41.6 50 0.0011 29.8 4.9 50 5-55 2-55 (90)
262 PLN02230 phosphoinositide phos 40.0 18 0.0004 43.4 2.3 71 410-486 496-569 (598)
263 PF06305 DUF1049: Protein of u 37.9 54 0.0012 27.4 4.3 16 44-59 46-61 (68)
264 KOG2419 Phosphatidylserine dec 33.1 8 0.00017 46.0 -2.0 75 285-360 280-358 (975)
265 PLN02952 phosphoinositide phos 31.5 35 0.00075 41.2 2.8 55 411-471 498-553 (599)
266 COG3086 RseC Positive regulato 30.9 68 0.0015 31.8 4.2 37 16-52 90-129 (150)
267 PF15192 TMEM213: TMEM213 fami 28.9 46 0.001 29.1 2.4 21 18-38 45-65 (82)
268 PF04995 CcmD: Heme exporter p 27.9 66 0.0014 25.4 3.0 10 50-59 31-40 (46)
269 cd00030 C2 C2 domain. The C2 d 24.9 68 0.0015 26.8 2.8 40 429-470 32-71 (102)
270 PF10808 DUF2542: Protein of u 23.5 67 0.0014 28.3 2.4 25 16-42 53-77 (79)
271 PF14316 DUF4381: Domain of un 22.4 1.2E+02 0.0026 29.7 4.3 17 70-86 65-81 (146)
272 PF14909 SPATA6: Spermatogenes 20.7 4.3E+02 0.0092 26.2 7.6 86 287-375 4-100 (140)
273 PF14012 DUF4229: Protein of u 20.6 2.3E+02 0.0049 24.5 5.1 11 17-27 17-27 (69)
274 PF07162 B9-C2: Ciliary basal 20.5 8.5E+02 0.018 24.3 10.1 80 287-372 4-102 (168)
275 PLN02222 phosphoinositide phos 20.4 80 0.0017 38.0 3.1 55 410-470 479-534 (581)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2.1e-58 Score=539.40 Aligned_cols=385 Identities=24% Similarity=0.483 Sum_probs=332.6
Q ss_pred hhHHHHHHHHH---HHHHHHHHhcchhHHHHHHHHhhheeeehhhHHHHHHHHHHHHHhhhhccccCCCccchHHHHHHH
Q 004037 6 ISIMHHVGIVL---FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVRWLNHAI 82 (777)
Q Consensus 6 ~~~~~~~~~vl---~~~wllg~~g~s~~~lllv~~i~l~~~~~r~~~rlr~~i~~e~~~~a~~~~~~~d~EsveWLN~iL 82 (777)
-.|||.+++++ +++|++||++|+|+.+||+++..+++ ++++..|+|+.++.+..+++.++++..|+|++||||+||
T Consensus 152 ~~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~~~~~v-Y~~~~~rv~rnird~v~~~~~~ek~~nd~ESveWLNtfL 230 (1227)
T COG5038 152 GDWYQSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMYV-YRTCIKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFL 230 (1227)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 36999888886 68999999999999998888765443 578888999999988888888899999999999999999
Q ss_pred HHhCcccchHHHHHHhhccchHHHHhhcCCccccceeeeeeecCCCCCeEeeEEEEecCCCCCeEEEEEEEEEeeCCCcc
Q 004037 83 EKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMS 162 (777)
Q Consensus 83 ~~~Wp~~~e~~~S~~I~~~~l~~~l~~~kP~~i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vvLDldis~~~~~D~~ 162 (777)
+++||++. +.+|++|...+.+ .|...-|.+|..++|++||||++||||.+||.|+ +++.|.+.|||+++|.+ .|++
T Consensus 231 ~KfW~i~e-P~iSqqV~dqvn~-~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp-~te~dtv~mD~~~sftP-~d~s 306 (1227)
T COG5038 231 QKFWPIIE-PSISQQVVDQVNQ-QLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYP-STESDTVVMDVDFSFTP-HDIS 306 (1227)
T ss_pred HhheeccC-hHHHHHHHHHHHH-HHHhhcchhhhhhhhhhcccCCCCCceeeeeecC-CCCCceEEEEeeeccCc-cchh
Confidence 99999984 6678888865555 4555889999999999999999999999999996 79999999999999964 5666
Q ss_pred ceeeehhhhc----------cC--cc-eeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceeEEEEeeccc--
Q 004037 163 AILAVKLRKR----------LG--FG-MWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFT-- 227 (777)
Q Consensus 163 i~l~v~l~~r----------lG--~G-~~~~v~V~~l~~~G~lRV~l~L~~~~P~vg~v~vsFle~P~idf~lkpl~~-- 227 (777)
.+.+-+.+.+ .| +| +++||.|+++.|.|++||++.|++.+||++.|++||||.|+|||.++|++.
T Consensus 307 D~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~ 386 (1227)
T COG5038 307 DVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDF 386 (1227)
T ss_pred hhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCc
Confidence 5554444332 23 35 678999999999999999999999999999999999999999999999963
Q ss_pred CCCccccCcchHHHHHHHHHHHhhhcccCCceeEecccccCCCCCCcceeeeecCceeEEEEEEEEecCCCCCC--CCCC
Q 004037 228 HGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD--LNGL 305 (777)
Q Consensus 228 ~G~dV~~iPGLs~~I~~~I~~~l~~~LV~Pn~~~Idl~k~~s~~~~~~fsL~y~~~~G~L~VtVieAk~L~~~D--~~G~ 305 (777)
+|+||+.||||+.||+++|..++++|+++|+++++|+.+++++.. ..+.|+|.|+|.+|++|...+ .++.
T Consensus 387 ~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s--------~~aIGVv~vkI~sa~~lk~~d~~i~~~ 458 (1227)
T COG5038 387 FGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDS--------GTAIGVVEVKIKSAEGLKKSDSTINGT 458 (1227)
T ss_pred cceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcccc--------CCeeEEEEEEEeeccCcccccccccCC
Confidence 589999999999999999999999999999999999999998742 468999999999999999888 6899
Q ss_pred CCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCcc-ce
Q 004037 306 ADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH-DM 382 (777)
Q Consensus 306 sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~-~~ 382 (777)
.|||+++.... ...+|++.++++||+|||+|++.+... .+.|.++|||++.++ |+.+|.+.++|..|...... +.
T Consensus 459 vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne 536 (1227)
T COG5038 459 VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNE 536 (1227)
T ss_pred CCceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccccCCcceeeeEEechHHhhhccccccc
Confidence 99999999855 567999999999999999999999974 467999999988876 99999999999988776543 22
Q ss_pred eeec-c-CCCCcEEEEEEEEEecCC
Q 004037 383 WIPL-Q-NIKIGRLHLAITVLEESA 405 (777)
Q Consensus 383 W~~L-~-~~~~GeI~LsL~y~p~s~ 405 (777)
-+.+ . ....|+|++.+.|.|..+
T Consensus 537 ~~e~~~~~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 537 LYEFLRNTKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeeeeccCccceEEEEeeeeecccC
Confidence 3333 2 356899999999988654
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=292.98 Aligned_cols=233 Identities=24% Similarity=0.324 Sum_probs=200.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccC-CCCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~-e~~~~ 348 (777)
...|++.|+.....|.|+|++|++|+.+|..|.+||||++++.+ .+++|++.++|+||.|||+|.|.+... ...++
T Consensus 155 ~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~ 234 (421)
T KOG1028|consen 155 NLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV 234 (421)
T ss_pred eEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence 35699999999999999999999999999778899999999987 679999999999999999999997643 25679
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEecCCCccc------------
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAKQGV------------ 409 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~s~~lsv------------ 409 (777)
|.+.|||+|+|+ |++||++.++|..+........|.+|... ..|+|+++|+|.+.++++++
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~ 314 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMD 314 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCccc
Confidence 999999999998 99999999999999888778889999752 24799999999999888765
Q ss_pred ----cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceEEecc
Q 004037 410 ----DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIWVHQP 482 (777)
Q Consensus 410 ----~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~v~~p 482 (777)
.++|++.++ ..+.++++++||+++++++||+|||+|.|..+++..+.+...+++.|.+. ..+. |-++.+.
T Consensus 315 ~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 315 VGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGS 391 (421)
T ss_pred CCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecC
Confidence 456777766 34458899999999999999999999999999999999999999998884 4443 5333322
Q ss_pred C--cccccccccccCCCCcccceeeecC
Q 004037 483 G--SEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 483 g--~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
. ..+.+||..|...||+|.++||...
T Consensus 392 ~~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 392 DSTGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CCCchHHHHHHHHHhCccCceeeeEecc
Confidence 2 3345999999999999999999875
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.2e-20 Score=178.08 Aligned_cols=114 Identities=24% Similarity=0.412 Sum_probs=101.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
.|.|+|+|++|++|+..+ .|++||||++.++.++++|+++.+ ++||+|||+|.|.+.. ....|.|+|||+|.++ |
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~--~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE--GVDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC--CCcEEEEEEEeCCCCcCC
Confidence 379999999999998777 689999999999999999999876 8999999999999975 2467999999999997 8
Q ss_pred ceeEEEEEeCC-cccCCCccceeeeccC----CCCcEEEEEEEE
Q 004037 362 DTLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV 400 (777)
Q Consensus 362 d~IG~v~I~L~-~L~~~~~~~~W~~L~~----~~~GeI~LsL~y 400 (777)
++||.+.++|. .+..+...+.|++|.+ ...|+|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999999996 5777777899999976 357999999987
No 4
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=2.1e-20 Score=175.08 Aligned_cols=110 Identities=21% Similarity=0.393 Sum_probs=97.8
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
..|+|.|++..+.|+|+|++|++|+ . .|.+||||+++|.+ .+.+|+++++|+||+|||+|.|.++..+ ...+
T Consensus 3 l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~t 79 (118)
T cd08677 3 LHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGT 79 (118)
T ss_pred EEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcE
Confidence 4699999999999999999999998 3 46799999999975 5789999999999999999999988543 3568
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
|.|+|||+|+++ +++||++.++|+++..+...+.|..|
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999997 99999999999998777777788765
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.4e-19 Score=170.78 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=99.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC----CCCcEEEEEEeecCCCC-C
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~----e~~~~L~V~V~D~D~~~-D 361 (777)
++|+|++|+||+.++.+|.+||||++++++++++|+++++|+||+|||+|.|.+... .....|.|.|||++.++ |
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999999999999999999999999999999999999999999998752 13568999999999987 9
Q ss_pred ceeEEEEEeCCccc--CCCccceeeeccCC------CCcEEEEEEE
Q 004037 362 DTLGDCTINISDLR--DGQRHDMWIPLQNI------KIGRLHLAIT 399 (777)
Q Consensus 362 d~IG~v~I~L~~L~--~~~~~~~W~~L~~~------~~GeI~LsL~ 399 (777)
++||++.++|+++. .+.....|++|.+. ..|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 45567899999752 3699999873
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=6.9e-19 Score=163.17 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=104.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
+|+|+|++|++|+..+.++.+||||++++++++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++.++ |++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999999999999999999999999999998753 3578999999999986 9999
Q ss_pred EEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEE
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
|++.++|+++..+...+.|++|.+. .|+|++.+.|.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999988889999999864 69999998874
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=9.8e-19 Score=163.80 Aligned_cols=115 Identities=29% Similarity=0.506 Sum_probs=104.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
.|+|+|++|++|+..|..|.+||||++.+++ ..++|+++++|+||.|||+|.|.+... .+.|.|+|||+|.++ |++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcc
Confidence 3789999999999999999999999999987 689999999999999999999998753 478999999999985 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC----CCcEEEEEEEEEe
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE 402 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~y~p 402 (777)
||++.++|+++..+...+.|++|.+. ..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988888999999753 3799999999864
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=6.3e-19 Score=167.50 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=98.0
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC---
Q 004037 286 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (777)
Q Consensus 286 ~L~VtVieAk~---L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~--- 359 (777)
.|+|+|++|+| |+.+|..|.+||||++++++++++|+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 88899999999999999999999999999999999999999999753 35899999999986
Q ss_pred ----CCceeEEEEEeCCcccCCCccceeeeccC------CCCcEEEE
Q 004037 360 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL 396 (777)
Q Consensus 360 ----~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~------~~~GeI~L 396 (777)
+|++||++.++|..+..+.....|++|.. .+.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 69999999999999999888899999984 24677764
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=6.6e-19 Score=163.78 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=102.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
|.|+|+|++|++|+..+..+.+||||++++++++++|+++.+ ++||.|||+|.|.+... ..+.|.|+|||++..+|++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 689999999999999999999999999999999999998754 79999999999999853 3568999999999877999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC--CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL~y 400 (777)
||++.++|+++..+.....|++|... ..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998777677899999753 47999999986
No 10
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1e-18 Score=162.46 Aligned_cols=115 Identities=34% Similarity=0.613 Sum_probs=104.1
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC
Q 004037 285 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~------~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
|+|+|+|++|++|+..+. .|.+||||+++++++.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 689999999999998874 36899999999999999999999999999999999998753 35789999999998
Q ss_pred CCCceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 359 ~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
.++++||++.++|.++..+...+.|++|.+...|+|++++++
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999999988777899999998889999998864
No 11
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=6.6e-19 Score=166.61 Aligned_cols=114 Identities=25% Similarity=0.451 Sum_probs=101.4
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++++.. |.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 4 i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~ 83 (125)
T cd08393 4 VQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPT 83 (125)
T ss_pred EEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCC
Confidence 468999999999999999999999999975 8999999999964 4579999999999999999999987422 34
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ +++||++.++|.++........|++|+
T Consensus 84 ~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 84 RVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 68999999999986 899999999999998887788999984
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=1.8e-18 Score=166.31 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=105.9
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
....|.|+|+|++|++|+..|..|.+||||+++++.+.++|+++++|+||.|||+|.|.+... ....|.|+|||+|.++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCC
Confidence 457899999999999999999999999999999999999999999999999999999998753 3468999999999886
Q ss_pred -CceeEEEEEeCCcccC-----CCccceeeeccCCCCcEEEEEEEE
Q 004037 361 -DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~-----~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
|++||++.++|.++.. ......|+.|.+...|+|+|++++
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999999876 223456888888889999999976
No 13
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=8.1e-19 Score=165.47 Aligned_cols=111 Identities=30% Similarity=0.368 Sum_probs=98.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEec-ccC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STW-DS 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V-~~~-e~ 345 (777)
..+|++.|. .+.|.|+|++|++|+.++ ++.+||||++++.+ .+.+|+++++++||.|||+|.|.+ ... ..
T Consensus 3 ~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 3 QVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred eEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 356889998 799999999999999999 89999999999974 478999999999999999999987 311 13
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
...|.|.|||+|.++ +++||++.++|.++..+.....|++|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 468999999999987 99999999999999988778899987
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=1.6e-18 Score=161.84 Aligned_cols=113 Identities=29% Similarity=0.443 Sum_probs=103.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
|.|+|++|++|+..+..+.+||||++++++ .+++|+++++|+||.|||+|.|.+... ..+.|.|+|||+|.++|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 789999999999998889999999999963 678999999999999999999998753 3467999999999888999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
||++.++|+++..+.....|++|.+...|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999999888999999998889999999875
No 15
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.7e-18 Score=163.96 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=101.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++.+. .|.+||||++++.+ .+.||+++++++||.|||+|.|.+...+ ..
T Consensus 4 i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~ 83 (125)
T cd04029 4 ILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLET 83 (125)
T ss_pred EEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCC
Confidence 46889999999999999999999998875 58899999999964 3679999999999999999999987422 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ +++||++.++|..+......+.|++|+
T Consensus 84 ~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 84 RTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 57999999999987 899999999999999888889999984
No 16
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.1e-18 Score=163.01 Aligned_cols=116 Identities=27% Similarity=0.345 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeecCCC--CC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD 361 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~~--~D 361 (777)
.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||.+.+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999998899999999999999999999999999999999999987422 235799999999887 58
Q ss_pred ceeEEEEEeCCccc-CCCccceeeeccCC-----CCcEEEEEEEEE
Q 004037 362 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 362 d~IG~v~I~L~~L~-~~~~~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
++||++.++|+++. .+.....|++|+.. .+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 45667899999853 489999999864
No 17
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=2.2e-18 Score=162.02 Aligned_cols=115 Identities=26% Similarity=0.533 Sum_probs=103.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...+++.|++..+.|.|+|++|++|+..+..|.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ....
T Consensus 4 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 4 ELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRT 83 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCE
Confidence 34688999999999999999999999999999999999999953 5789999999999999999999987422 2458
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|+|||++.++ +++||++.++|+++..+...+.|++|+
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999886 999999999999999888889999986
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=3.8e-18 Score=160.70 Aligned_cols=112 Identities=30% Similarity=0.513 Sum_probs=99.0
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|+||++++ .+|.+||||.+.++.+ .++|+++++|+||.|||+|.|.+.. ....|.|.|||++.++ |++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence 679999999999874 4688999999999774 6899999999999999999999985 3468999999999986 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
||.+.++|+++..+...+.|++|+.. ..|+|||++++
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999887778999999853 37999999864
No 19
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.7e-18 Score=160.47 Aligned_cols=115 Identities=35% Similarity=0.583 Sum_probs=102.2
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 285 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
|.|+|+|++|++|+..+. .+.+||||++.++.++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999999988 89999999999999999999999999999999999999852 3578999999999885 9
Q ss_pred ceeEEEEEeCCcccC---CCccceeeeccCC-------CCcEEEEEEEE
Q 004037 362 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV 400 (777)
Q Consensus 362 d~IG~v~I~L~~L~~---~~~~~~W~~L~~~-------~~GeI~LsL~y 400 (777)
++||++.++|.++.. ......|++|.+. ..|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999873 3446899999865 48999999874
No 20
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=3.4e-18 Score=162.05 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=100.6
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~ 345 (777)
+.+|+|.|++..+.|.|+|++|+||++.+..+.+||||+++|.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 34689999999999999999999999998889999999999965 3789999999999999999999987533 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCC-ccceeeec
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL 386 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~-~~~~W~~L 386 (777)
..+|.|.|||++.++ +++||++.|+|+++.... ....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 468999999999886 999999999999996654 46789876
No 21
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=4e-18 Score=160.04 Aligned_cols=114 Identities=32% Similarity=0.526 Sum_probs=102.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcEE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVL 349 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L 349 (777)
..+++.|....+.|.|+|++|++|+..+..+.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ....|
T Consensus 5 l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l 84 (124)
T cd08385 5 LQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL 84 (124)
T ss_pred EEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence 4688999999999999999999999999889999999999964 5789999999999999999999987422 24589
Q ss_pred EEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 350 VIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 350 ~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
.|+|||+|.++ +++||++.++|+++..+...+.|++|.
T Consensus 85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999986 899999999999998888889999985
No 22
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=4.4e-18 Score=162.05 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=99.8
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++++.. |.+||||++++.+ .+.||+++++++||+|||+|.|.+...+ ..
T Consensus 4 i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~ 83 (128)
T cd08392 4 IEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSS 83 (128)
T ss_pred EEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCC
Confidence 468999999999999999999999999875 9999999999965 4779999999999999999999987532 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC---Cccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~---~~~~~W~~L~ 387 (777)
..|.|.|||.+.++ +++||++.|+|+++... .....||+|.
T Consensus 84 ~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 84 RQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred cEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 68999999999886 89999999999998664 3567899883
No 23
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=9.1e-18 Score=164.12 Aligned_cols=119 Identities=29% Similarity=0.485 Sum_probs=102.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
.|+|+|++|++|++++.+|.+||||++.+++++.+|+++.+ |+||.|||+|.|.+... ....|.|.|||++..+ |++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 38999999999999999999999999999999999999877 69999999999998642 3468999999999875 999
Q ss_pred eEEEEEeCCcccCC----CccceeeeccCCC-----------CcEEEEEEEEEecCC
Q 004037 364 LGDCTINISDLRDG----QRHDMWIPLQNIK-----------IGRLHLAITVLEESA 405 (777)
Q Consensus 364 IG~v~I~L~~L~~~----~~~~~W~~L~~~~-----------~GeI~LsL~y~p~s~ 405 (777)
||++.++|+++..+ ...+.|++|.+.. .|+|+|++++.....
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 99999999998653 3468999998632 499999999875443
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.76 E-value=1.4e-17 Score=164.16 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=102.3
Q ss_pred eeEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcc
Q 004037 284 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKW 332 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D------------------------------~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~W 332 (777)
.|.|.|+|++|++|+.+| ..|.+||||++++++ +..+|+++++++||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 699999999999999987 246789999999987 4579999999999999
Q ss_pred cceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEE
Q 004037 333 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVL 401 (777)
Q Consensus 333 nEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~ 401 (777)
||+|.|.+.. ..+.|.|.|||+|.+++++||.+.++|+++..+...+.|++|.+. ..|+|++++.|.
T Consensus 86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999865 346799999999998899999999999999988888999999652 368999999873
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.2e-17 Score=157.70 Aligned_cols=114 Identities=23% Similarity=0.406 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|++|+. ..|.+||||+++++. ++++|+++++|+||.|||+|.|.+.. ..+.|.|+|||++..+ |++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 678999999999974 67899999999999999999999864 3568999999999987 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEecC
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEES 404 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~s 404 (777)
||++.++|+++..+.....|++|... ..|+|++++.|.+.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999999999988777899999753 489999999998765
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=8e-18 Score=163.77 Aligned_cols=114 Identities=24% Similarity=0.234 Sum_probs=99.3
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~ 345 (777)
+...|++.| ..+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+.. .
T Consensus 18 G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~ 93 (146)
T cd04028 18 GDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--T 93 (146)
T ss_pred ceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--C
Confidence 346788888 4689999999999999864 678999999999965 37899999999999999999999982 5
Q ss_pred CcEEEEEEe-ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 346 PNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 346 ~~~L~V~V~-D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
...|.|.|| |++.++ +++||++.|+|+++..+.....|++|.+.
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 679999999 677776 89999999999999887778899999863
No 27
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=7.2e-18 Score=160.33 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=98.9
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEe-cccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~ 346 (777)
+.+|++.|+...+.|.|+|++|++|+..+.. +.+||||++++.+ ++.||+++++|+||.|||+|.|. +...+ ..
T Consensus 4 ~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~ 83 (128)
T cd08388 4 TLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQD 83 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCC
Confidence 4568999999999999999999999998876 8999999999964 57799999999999999999994 44221 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC--Cccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~--~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ |++||++.++|+++... .....|++|+
T Consensus 84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 47999999999886 99999999999998765 5578899886
No 28
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=1e-17 Score=157.67 Aligned_cols=115 Identities=25% Similarity=0.436 Sum_probs=102.2
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
..+++|.|++..+.|+|+|++|+||+..+..+.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ..
T Consensus 4 ~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 4 RIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 45789999999999999999999999999889999999999963 6789999999999999999999986422 24
Q ss_pred cEEEEEEeecCCC--C-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHF--V-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~--~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||.+.+ + +++||++.++|.++..+.....|++|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 6899999999875 3 899999999999998888889999884
No 29
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.3e-17 Score=157.57 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEe-cccCC-CCc
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SPN 347 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~~ 347 (777)
+.+|++.|++..+.|.|+|++|+||++.+.+|.+||||++.+.+ ++.+|+++++ +||+|||+|.|. +...+ ...
T Consensus 4 ~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~ 82 (124)
T cd08389 4 DLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM 82 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence 35789999999999999999999999999889999999988855 6789999888 999999999998 55322 346
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
+|.|+|||++.++ +++||++.|+|+++..+.....|++|++
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8999999999987 9999999999999988888899999973
No 30
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=4.5e-17 Score=154.30 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=98.2
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
...|+|+|++|+||+.. +.+||||+++++. +..+|++. +++||.|||+|.|.+.+. ....|.|.|||++.++ |
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCC
Confidence 35799999999999874 4789999999987 45789974 689999999999986543 2257999999999886 9
Q ss_pred ceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEec
Q 004037 362 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE 403 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~ 403 (777)
++||++.++|+.+..+...+.|++|.+. ..|+|+|+++|.+.
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999999988888999999753 35999999999864
No 31
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.8e-17 Score=154.20 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=99.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
.|+|+|++|++|+.++.++.+||||+++++.++++|+++++|+||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 3899999999999999889999999999999999999999999999999999998753 2568999999999887 8999
Q ss_pred EEEEEeCCcccCCCccceeeeccC---------CCCcEEEEEE
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI 398 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~---------~~~GeI~LsL 398 (777)
|++.++|+++..+.....|+.|.+ ...|.|++.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999987777789999975 2368887765
No 32
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=2.3e-17 Score=154.93 Aligned_cols=114 Identities=27% Similarity=0.525 Sum_probs=101.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC--CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~ 348 (777)
..|++.|..+.+.|+|+|++|++|+..+..+.+||||++++.+ ++++|+++++++||.|||+|.|.+...+ ....
T Consensus 5 l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~ 84 (125)
T cd08386 5 IQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRV 84 (125)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCE
Confidence 4688999999999999999999999999889999999999943 6789999999999999999999753221 2357
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|+|||+|.++ +++||++.++|+++..+.....|+.|+
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 85 LYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999886 899999999999999888889999986
No 33
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.7e-17 Score=155.50 Aligned_cols=113 Identities=32% Similarity=0.464 Sum_probs=97.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC--CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~ 346 (777)
..+++.|+...+.|.|+|++|++|+..+.++.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ..
T Consensus 5 l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~ 84 (125)
T cd04031 5 IQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence 4578899999999999999999999999889999999999965 5789999999999999999999864321 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|+|||++.++ +++||++.++|++... .....||+|+
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 68999999999887 8999999999998333 3356899985
No 34
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2e-17 Score=155.75 Aligned_cols=110 Identities=31% Similarity=0.479 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG 365 (777)
.|+|+|++|++|+.+ .+||||+++++.++.+|+++++|+||.|||+|.|.+... ....|.|+|||+|..++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence 489999999999876 789999999999999999999999999999999998643 357899999999988899999
Q ss_pred EEEEeCCcccCCC-----ccceeeeccCCC----CcEEEEEEEE
Q 004037 366 DCTINISDLRDGQ-----RHDMWIPLQNIK----IGRLHLAITV 400 (777)
Q Consensus 366 ~v~I~L~~L~~~~-----~~~~W~~L~~~~----~GeI~LsL~y 400 (777)
++.++|+++.... ....|++|.... .|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987532 256899998743 6999999976
No 35
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=1.1e-17 Score=157.32 Aligned_cols=108 Identities=23% Similarity=0.410 Sum_probs=93.8
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEE
Q 004037 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (777)
Q Consensus 276 fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~ 350 (777)
++++| ..+.|.|+|++|+||++++ .|.+||||++++.+ .+.||+++++++||.|||+|.|.+...+....|.
T Consensus 5 l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 5 LSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLL 81 (119)
T ss_pred EEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEE
Confidence 45555 6789999999999999998 88999999999975 3679999999999999999999987533445799
Q ss_pred EEEeecCCCC--CceeEEEEEeCCcccCCCccceeeec
Q 004037 351 IEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 351 V~V~D~D~~~--Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
|.|||++... +++||.+.|+|.++..+.....||.|
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 9999999864 68999999999999877778899976
No 36
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=2e-17 Score=155.93 Aligned_cols=102 Identities=29% Similarity=0.482 Sum_probs=89.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C----C--eEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeec
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL-G----P--YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK 356 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L-g----~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~ 356 (777)
.|+|+|++|++|+..+ .|.+||||++++ + . ++++|+++++|+||+|||+|.|.+...+ ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 499999999998 3 1 4679999999999999999999997532 235799999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|..+ +++||++.++|.++..++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9876 8999999999999999888899999975
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.5e-17 Score=153.96 Aligned_cols=113 Identities=24% Similarity=0.375 Sum_probs=99.9
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|+...+.|.|+|++|++|+..+ ..+.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~ 82 (123)
T cd08521 3 IEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLET 82 (123)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCC
Confidence 3688999999999999999999999988 788999999999853 4689999999999999999999987422 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
..|.|.|||++.++ +++||++.++|+++..+.....||+|
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 83 RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 58999999999886 89999999999999877778899987
No 38
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=8.3e-17 Score=152.29 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=101.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCc
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd 362 (777)
+.++|+|+|++|++|+..+..|.+||||++.+++++++|+++++++||.|||+|.|.+.. ....|.|+|||++..+|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 467999999999999999989999999999999999999999999999999999998765 356899999999988899
Q ss_pred eeEEEEEeCCcccCCCccceeeeccC-------CCCcEEEEEEEEEec
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLEE 403 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~-------~~~GeI~LsL~y~p~ 403 (777)
+||++.+++..+.. ....|++|.. ...|+|.+++.+.+.
T Consensus 79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999999987643 3457777742 348999999987654
No 39
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=3.2e-17 Score=155.64 Aligned_cols=114 Identities=33% Similarity=0.473 Sum_probs=99.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-------k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
.|+|+|++|++|+..+..|.+||||++++.+. +++|+++++|+||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence 38999999999999998899999999999654 5799999999999999999999875 24679999999999
Q ss_pred CC-CceeEEEEEeCCcccCCCc------cceeeeccCC-----CCcEEEEEEEEE
Q 004037 359 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 359 ~~-Dd~IG~v~I~L~~L~~~~~------~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
++ +++||++.+++.++..+.. ...|++|++. ..|+|+|++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 86 8999999999999886543 4689999852 489999999874
No 40
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=5.8e-17 Score=152.31 Aligned_cols=111 Identities=26% Similarity=0.511 Sum_probs=97.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|.|+|++|++|++++..|.+||||++.++.. .++|+++++|+||.|||.|.|.+.. ..+.|.|.|||++.++ |++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence 7899999999999999999999999999874 5799999999999999999999874 3468999999999986 9999
Q ss_pred EEEEEeCCcccCC-CccceeeeccCCC-----CcEEEEEEE
Q 004037 365 GDCTINISDLRDG-QRHDMWIPLQNIK-----IGRLHLAIT 399 (777)
Q Consensus 365 G~v~I~L~~L~~~-~~~~~W~~L~~~~-----~GeI~LsL~ 399 (777)
|++.++++.+... ...+.|++|++.. .|+|++.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999888754 3468999997632 899998875
No 41
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=8.6e-17 Score=149.49 Aligned_cols=112 Identities=30% Similarity=0.573 Sum_probs=99.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|.|+|++|++|+..+..+.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence 6899999999999999989999999999999988999999999999999999999864 3578999999999865 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
||++.++|.++..+. ..|+.|... ..|+|++++.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987653 579999653 48999999875
No 42
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=1.2e-16 Score=152.13 Aligned_cols=114 Identities=32% Similarity=0.566 Sum_probs=100.7
Q ss_pred eeEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~----------G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
.|.|+|+|++|++|+..+.. |.+||||++++++++ .+|+++.+|+||.|||+|.|.+.. ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 47899999999999988863 689999999998854 699999999999999999999973 4689999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccC--CCccceeeeccCCCCcEEEEEEEEEe
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~--~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
|||++.++ +++||++.++|+++.. +...+.|++|+ ..|+|+++++|..
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 99998876 8999999999999887 56678999998 5799999999864
No 43
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=5.2e-17 Score=151.95 Aligned_cols=114 Identities=27% Similarity=0.420 Sum_probs=101.6
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
.++++.|+...+.|.|+|++|++|+..+ ..+.+||||++++.+ +..+|+++++++||.|||+|.|.+.... ....
T Consensus 3 l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~ 82 (123)
T cd08390 3 LWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT 82 (123)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence 4688999999999999999999999998 688999999999854 5689999999999999999999987422 2358
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|.|||++..+ +++||++.++|+++........|++|+
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999999999886 899999999999999988889999986
No 44
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=8.4e-17 Score=150.25 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=100.2
Q ss_pred eeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 284 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
.|.|+|+|++|++|+..+ ..+.+||||++++++ ..++|+++.+++||.|||+|.|.+.. ..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence 478999999999999765 457799999999987 78999999999999999999999873 4678999999999886
Q ss_pred -CceeEEEEEeCCcccCCCccc-eeeecc--CCCCcEEEEEEEEEe
Q 004037 361 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE 402 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~~~-~W~~L~--~~~~GeI~LsL~y~p 402 (777)
|++||++.++|.++..+.... .|..|. ++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999998876654 344443 356899999999975
No 45
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.71 E-value=2.5e-17 Score=160.97 Aligned_cols=96 Identities=33% Similarity=0.577 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
..|.|+|+|++|.+|..+|..+++||||.+.+++++.||+++.+++||+|||+|.|.+.+ ....|.+.|||+|.++ |
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD--PNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC--CCceEEEEEEeCCCCCcc
Confidence 579999999999999999988999999999999999999999999999999999999986 4578999999999998 9
Q ss_pred ceeEEEEEeCCcccCCCcc
Q 004037 362 DTLGDCTINISDLRDGQRH 380 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~ 380 (777)
|+||.++|+|..+......
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 9999999999988776543
No 46
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=2.3e-16 Score=151.05 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=99.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC--------CCCcEEEEEEeecC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW--------DSPNVLVIEVRDKD 357 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~--------e~~~~L~V~V~D~D 357 (777)
.|+|+|++|++|+.+|..|.+||||++.++.++++|+++++|+||.|||+|.|.+... +....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999975321 12357999999999
Q ss_pred CCC-CceeEEEEE-eCCcccC---CCccceeeeccC--CCCcEEEEEEEEEec
Q 004037 358 HFV-DDTLGDCTI-NISDLRD---GQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (777)
Q Consensus 358 ~~~-Dd~IG~v~I-~L~~L~~---~~~~~~W~~L~~--~~~GeI~LsL~y~p~ 403 (777)
..+ |++||++.+ ++..+.. .....+|++|.. ...|+|++++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 899999987 4444443 356789999974 358999999999864
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=8.4e-17 Score=147.29 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG 365 (777)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++++|.||.|||+|.|.+... ..+.|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence 3889999999999998889999999999999999999999999999999999999863 34689999999987 89999
Q ss_pred EEEEeCCcccCCC--ccceeeeccC
Q 004037 366 DCTINISDLRDGQ--RHDMWIPLQN 388 (777)
Q Consensus 366 ~v~I~L~~L~~~~--~~~~W~~L~~ 388 (777)
++.++|.++.... ..+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999987654 5689999975
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=1.2e-16 Score=147.71 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=83.9
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 285 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~----G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
|+|.|+|++|++|++.+.. +.+||||+++++.+++||+++++++||+|||+|.|.+...+....|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999987632 358999999999999999999999999999999999875444568999999999987
Q ss_pred -CceeEEEEEeCCcccCCCc
Q 004037 361 -DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~ 379 (777)
|++||++.++|+++..+..
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 9999999999999876543
No 49
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=7.4e-17 Score=153.42 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=97.5
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
.++|.|....+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ....
T Consensus 3 ~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~ 82 (133)
T cd08384 3 LVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKT 82 (133)
T ss_pred EEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCE
Confidence 578999999999999999999999999989999999999964 4689999999999999999999987432 2358
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.|+|||+|..+ +++||++.+++.. .+.....|+.+..
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999999876 8999999999985 4445678998754
No 50
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=3.7e-16 Score=146.99 Aligned_cols=115 Identities=29% Similarity=0.501 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
.|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ....|.|+|||++..+ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 6899999999999999999999999999864 468999999999999999999998853 3568999999999885 8
Q ss_pred ceeEEEEEeCCcccC---CCccceeeeccCCCCcEEEEEEEEEec
Q 004037 362 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLEE 403 (777)
Q Consensus 362 d~IG~v~I~L~~L~~---~~~~~~W~~L~~~~~GeI~LsL~y~p~ 403 (777)
++||++.++|+.+.. +...+.|++|.+ .|+|++.++|.-.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEeee
Confidence 999999999997643 335678999975 8999999988643
No 51
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=147.54 Aligned_cols=102 Identities=27% Similarity=0.521 Sum_probs=90.3
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-cceeeEecccCC-CCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~W-nEtF~f~V~~~e-~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|++|++|+.++. .|.+||||++++++++++|+++++++||.| ||+|.|.+...+ ..+.|.|+|||++.++ ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6799999999999884 789999999999999999999999999999 999999987532 2368999999999987 89
Q ss_pred eeEEEEEeCCcccC---CCccceeeeccC
Q 004037 363 TLGDCTINISDLRD---GQRHDMWIPLQN 388 (777)
Q Consensus 363 ~IG~v~I~L~~L~~---~~~~~~W~~L~~ 388 (777)
+||++.++|.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999977 345789999864
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=3.7e-16 Score=147.56 Aligned_cols=115 Identities=22% Similarity=0.348 Sum_probs=101.4
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC-CCCcEEEEEEeecCCCC-CceeEEEE
Q 004037 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT 368 (777)
Q Consensus 291 VieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~-e~~~~L~V~V~D~D~~~-Dd~IG~v~ 368 (777)
|++|++|+. ..|.+||||+++++..+++|++++++.||.|||+|.|.+... .....|.|+|||++..+ |++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 679999988 678999999999999999999999999999999999998743 24578999999999886 89999999
Q ss_pred EeCCcccCCCccceeeeccCC----CCcEEEEEEEEEecCCCc
Q 004037 369 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEESAKQ 407 (777)
Q Consensus 369 I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~y~p~s~~l 407 (777)
++|+++..+.....|++|.+. ..|+|+++++|.|.....
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 999999988888899999643 268999999999876543
No 53
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2e-16 Score=156.59 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=97.6
Q ss_pred ceeeeecC------------ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceee
Q 004037 275 WFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFN 337 (777)
Q Consensus 275 ~fsL~y~~------------~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~ 337 (777)
.|+|.|.+ ..|.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++++|+||.|||+|.
T Consensus 5 ~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 5 KVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred EEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 46677777 5699999999999999999889999999999843 678999999999999999999
Q ss_pred EecccCC--CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 338 IPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 338 f~V~~~e--~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.+...+ ....|.|+|||+|.++ +++||++.+++.++......+.|+.|.+
T Consensus 85 f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 85 YDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9854211 2357999999999987 9999999999999987777788888864
No 54
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=7e-17 Score=155.43 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=97.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
.+|+|.|.+..+.|.|+|++|+||+..+..|.+||||++++.+ .+.||+++++|+||+|||+|.|.++..+ ...
T Consensus 4 i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~ 83 (136)
T cd08406 4 ILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDL 83 (136)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCc
Confidence 4689999999999999999999999999899999999999954 2678999999999999999999987432 346
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|.|||+|.++ +++||++.+.... .+...+.|..+..
T Consensus 84 ~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 84 SLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8999999999887 9999999997663 4555677877654
No 55
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=2e-16 Score=154.37 Aligned_cols=101 Identities=30% Similarity=0.363 Sum_probs=87.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecc------------cC-C-CC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS------------TW-D-SP 346 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~------------~~-e-~~ 346 (777)
.|.|+|++|++|+. .+|.+||||++++.+ ++.+|+++++|+||+|||+|.|.+. +. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999976 6789999999999999999999984 11 1 12
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC-CccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~-~~~~~W~~L~~ 388 (777)
..|.|.|||++.++ |++||++.|+|..+..+ .....||+|+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 57999999999886 99999999999999887 56789999975
No 56
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=3.9e-16 Score=147.88 Aligned_cols=109 Identities=33% Similarity=0.537 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC------
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------ 359 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~------ 359 (777)
.|+|+|++|++|+..|..|.+||||+++++++.++|+++++|+||.|||+|.|.+.. ....|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~--~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN--SSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC--CCCEEEEEEEECCCCcccccc
Confidence 689999999999999988999999999999999999999999999999999998864 246899999999852
Q ss_pred ------CCceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEE
Q 004037 360 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI 398 (777)
Q Consensus 360 ------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL 398 (777)
.+++||++.+++.++.. ....|+.|+.. .+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 38999999999998753 45799999852 378888864
No 57
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.2e-16 Score=154.12 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=95.5
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e- 344 (777)
...|+|.|.+..+.|.|+|++|+||+.++. .+.+||||++++.+ .+.||+++++++||+|||+|.|.++..+
T Consensus 3 el~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L 82 (138)
T cd08407 3 EVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELL 82 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHh
Confidence 346899999999999999999999999983 35589999999966 3679999999999999999999998533
Q ss_pred CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 345 ~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
....|.|+|||+|.++ +++||++.+++.. .+.....|..+.
T Consensus 83 ~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 83 AASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred CccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 2457999999999987 9999999999974 444556777664
No 58
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=5.2e-16 Score=146.25 Aligned_cols=109 Identities=25% Similarity=0.447 Sum_probs=94.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC---Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~---Dd 362 (777)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|.+.. .+.|.|+|||++.++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999999989999999999996 588999999999999999999999974 478999999999875 47
Q ss_pred eeEEEEEeCCcccCCC-ccceeeeccCCC-------CcEEEEEE
Q 004037 363 TLGDCTINISDLRDGQ-RHDMWIPLQNIK-------IGRLHLAI 398 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~-~~~~W~~L~~~~-------~GeI~LsL 398 (777)
+||++.+++.++.... ....|++|+... .|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999987544 347799995422 67887765
No 59
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=2.8e-16 Score=145.41 Aligned_cols=100 Identities=27% Similarity=0.533 Sum_probs=87.3
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeecCC
Q 004037 285 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH 358 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~ 358 (777)
|+|+|+|++|++|+..+.. +.+||||++++.+ ..++|+++++|+||.|||+|.|.+...+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999853 5689999999999999999999876432 24689999999999
Q ss_pred CC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 359 FV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 359 ~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
++ |++||++.++|.++.. ...|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 87 9999999999999984 44788875
No 60
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-16 Score=180.08 Aligned_cols=165 Identities=27% Similarity=0.383 Sum_probs=139.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
..|.|.|.+|+||++.+..|.+||||.|.++. ..++|.++.+++.|.|.|+|+|.++. ..+.|.|.|||.|...|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccccccccc
Confidence 36889999999999999999999999999998 68999999999999999999999986 4678999999999334999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEEecCCCccc-----------------cCCCcCCccccc
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKE 421 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~ 421 (777)
||.+.|.-.+|......+.|+.|+... +|+|||++.+.+....-+. .++++.+.+
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~--- 159 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL--- 159 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee---
Confidence 999999999998877889999998743 8999999998875543211 234433333
Q ss_pred CCCccccccccceeccCCCCcccccccccccCCC
Q 004037 422 GMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 422 ~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
+|..+.+.++|.+++.|.||.|||.+++++-.+
T Consensus 160 -~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~ 192 (800)
T KOG2059|consen 160 -CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTRE 192 (800)
T ss_pred -cccchhhccccceeeeccCcchhhheeeeeccc
Confidence 677777779999999999999999999887433
No 61
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=2.7e-16 Score=150.36 Aligned_cols=115 Identities=25% Similarity=0.410 Sum_probs=97.7
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..+++.|.+..|.|.|+|++|++|+.++..|.+||||++++++ .+++|+++++++||.|||+|.|.+...+. ..
T Consensus 4 l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 83 (136)
T cd08402 4 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKV 83 (136)
T ss_pred EEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCC
Confidence 4688999999999999999999999999999999999999953 46789999999999999999999874222 24
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
.|.|+|||++.++ |++||++.+++... +.....|+++...+
T Consensus 84 ~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~ 125 (136)
T cd08402 84 HLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASP 125 (136)
T ss_pred EEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCC
Confidence 7999999999987 89999999999853 44567888876543
No 62
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=8.1e-16 Score=145.90 Aligned_cols=117 Identities=38% Similarity=0.579 Sum_probs=101.6
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVL 349 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L 349 (777)
.+++.|.. +.|+|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.+|.|||+|.|.+...+..+.|
T Consensus 5 ~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l 82 (131)
T cd04026 5 YLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRL 82 (131)
T ss_pred EEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEE
Confidence 35566665 89999999999999988888999999999963 689999999999999999999998754345689
Q ss_pred EEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEE
Q 004037 350 VIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (777)
Q Consensus 350 ~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (777)
.|+|||++.++ +++||++.++|+++... ..+.|++|.+.+.|+.
T Consensus 83 ~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 83 SIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99999999876 89999999999999855 6789999998888864
No 63
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=3.2e-16 Score=149.94 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=97.7
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|....+.|.|+|++|++|+..|..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ...
T Consensus 4 l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~ 83 (136)
T cd08404 4 LLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDI 83 (136)
T ss_pred EEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCC
Confidence 4678999999999999999999999999999999999999853 3678999999999999999999987422 245
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||+|.++ +++||++.+++.. .+.....|++|..
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 84 SVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred EEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 7999999999987 9999999999998 3455678998854
No 64
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.3e-15 Score=144.55 Aligned_cols=104 Identities=25% Similarity=0.355 Sum_probs=89.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCcee
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~I 364 (777)
+.|.|+|++|++|+..+ ..||||+|.+++++.+|++.++ .||.|||+|.|.+.. ....|.|+|||+|.++||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCce
Confidence 68999999999997644 5699999999999999999988 499999999999975 33459999999998889999
Q ss_pred EEEEEeCCcccCCCcc--ceeeeccC---CCCcEE
Q 004037 365 GDCTINISDLRDGQRH--DMWIPLQN---IKIGRL 394 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~--~~W~~L~~---~~~GeI 394 (777)
|++.|+|+++..+... .+||+|.. .+.|++
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999998876554 89999975 235554
No 65
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=9.4e-16 Score=150.15 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=90.3
Q ss_pred EEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 287 ARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G--------------~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
|.|+|++|++|+.+|..+ .+||||++.+++++.+|+++++++||+|||+|.|.+......+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 689999999999999999999999999999999987543345789999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCc-------cceeeeccCCCCc
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG 392 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~-------~~~W~~L~~~~~G 392 (777)
|||+|..+ |++||++.++|.++..... ...|+.|.+..++
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 99999985 9999999999998876542 3578888765554
No 66
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=4.4e-16 Score=148.93 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=96.4
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|.+..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++++||.|||+|.|.+.... ...
T Consensus 4 l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~ 83 (136)
T cd08405 4 LLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRET 83 (136)
T ss_pred EEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCC
Confidence 4688999999999999999999999999899999999999832 4679999999999999999999986322 235
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||++.++ +++||++.+++... +...+.|++|..
T Consensus 84 ~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 84 TLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 7999999999987 89999999999975 444567777654
No 67
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=5.4e-16 Score=147.95 Aligned_cols=113 Identities=25% Similarity=0.446 Sum_probs=95.9
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
.+|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+.... ...
T Consensus 3 l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~ 82 (134)
T cd08403 3 LMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNV 82 (134)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCC
Confidence 4689999999999999999999999999999999999999843 3679999999999999999999986422 224
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||++.++ +++||++.+++. ..+.....|+.+..
T Consensus 83 ~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 83 SLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 6999999999987 999999999987 33444677887743
No 68
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=5.4e-16 Score=149.58 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=97.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~ 345 (777)
+..++|.|+...+.|.|+|++|+||+.++..|.+||||++++.+ .+.||+++++++||+|||+|.|.+...+ .
T Consensus 3 ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 3 ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred eEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 34688999999999999999999999999999999999999964 2579999999999999999999998532 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
...|.|.|||++.++ +++||++.+++..... ...++|..+..
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 458999999999876 9999999999874432 23467887753
No 69
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=1.7e-15 Score=148.69 Aligned_cols=102 Identities=32% Similarity=0.559 Sum_probs=90.2
Q ss_pred ecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----------------------------eEEEeeeecCCCCC
Q 004037 280 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----------------------------YRFRTKTQRKTLSP 330 (777)
Q Consensus 280 y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----------------------------~k~kTkVi~~TlnP 330 (777)
..++.+.|.|+|++|++|+++|.+|.+||||++.+++ +.++|+++.+|+||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 3578999999999999999999999999999999864 23789999999999
Q ss_pred cccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeec
Q 004037 331 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
.|||+|.|.+... ..+.|.|+|||++ +++||++.++|+++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999998753 3578999999998 8999999999999984 447899987
No 70
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=1e-15 Score=144.89 Aligned_cols=115 Identities=27% Similarity=0.423 Sum_probs=100.2
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|++..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.... ...
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~ 82 (134)
T cd00276 3 LLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEV 82 (134)
T ss_pred EEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCc
Confidence 4578999999999999999999999998889999999999965 3679999999999999999999987532 246
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
.|.|+|||.+.++ +++||.+.++|++ .+...+.|++|....
T Consensus 83 ~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 83 SLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred EEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 8999999999876 8999999999998 555678999997654
No 71
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=1e-15 Score=146.71 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=94.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..++|.|.+..|.|.|+|++|++|+..|..|.+||||++++.+ .+.+|+++++|+||.|||+|.|.+...+. ..
T Consensus 3 i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~ 82 (135)
T cd08410 3 LLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENV 82 (135)
T ss_pred EEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCC
Confidence 4688999999999999999999999999999999999999833 46799999999999999999999864222 34
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||+|..+ +++||++.+....... ...++|+.|.+
T Consensus 83 ~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 83 SLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 7999999999876 9999999876533322 23577888764
No 72
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=1.2e-15 Score=146.47 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=94.3
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCcccceeeEecccCCCCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~Tl-nP~WnEtF~f~V~~~e~~~ 347 (777)
..|+|.|.+..|.|+|+|++|+||++++..+.+||||++++.. .+.||+++++|+ ||.|||+|.|.++..+...
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 3589999999999999999999999886667789999999843 578999999996 6999999999998654445
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
.|.|.|||++..+ +++||++.+..+... +...++|.++.
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 8999999999876 999999999997632 23356777654
No 73
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.62 E-value=1.2e-15 Score=146.78 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=98.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..++|.|.+..+.|.|+|++|+||+..+ .+.+||||++.+.+ .+.+|+++++++||.|||+|.|.+...+ ...
T Consensus 4 i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~ 82 (137)
T cd08409 4 IQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTA 82 (137)
T ss_pred EEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCcc
Confidence 3578999999999999999999999988 78899999999864 3679999999999999999999997432 235
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
.|.|.|||.+..+ +++||++.++......+...+.|..+...
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 83 SLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred EEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 8999999999876 99999999997766666667788877543
No 74
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=4.7e-15 Score=139.52 Aligned_cols=107 Identities=30% Similarity=0.402 Sum_probs=94.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|+|++|++|+..+..+.+||||+++++. ..++|++++++.||.|||+|.|.+... .+.|.|+|||++.++ |+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 68999999999999999889999999999976 679999999999999999999988753 468999999999987 88
Q ss_pred eeEEEEEeCCcccCCCccceeeeccCCCCcEE
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (777)
+||++.++|.++..+ ..+.||.|.+...+.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 5678888877655544
No 75
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=5.9e-15 Score=138.70 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=94.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCC--CCcEEEEEEeecCCCC-
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~~~- 360 (777)
|.|.|+|++|++|+..+..+.+||||+++++.+.++|++.++ ++||.|||+|.|.+.... ..+.|.|+|||.+.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999988899999999999998899999875 999999999999998642 2468999999999886
Q ss_pred CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 361 DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
+++||++.++|.++..+...+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999888888999999863
No 76
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.62 E-value=2.2e-15 Score=143.93 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.2
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcccceeeEecccCC--
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-- 344 (777)
..+++.|+...+.|+|+|++|++|+..+..|.+||||++++.+ .+++|+++++|+||.|||+|.|.+....
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 3577889999999999999999999999889999999999963 4789999999999999999999987421
Q ss_pred -CCcEEEEEEeecCCCC-CceeEEEEEeCCcccC
Q 004037 345 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (777)
Q Consensus 345 -~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~ 376 (777)
....|.|+|||++.++ +++||++.++|+++..
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2458999999999987 9999999999998874
No 77
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=5e-15 Score=139.00 Aligned_cols=113 Identities=33% Similarity=0.427 Sum_probs=96.5
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEeccc-CC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~-~e-~~ 346 (777)
.++++.|++..+.|+|+|++|++|+..+..+.+||||++++.+ .+.+|+++++++||.|||+|.|.... .+ ..
T Consensus 4 ~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~ 83 (123)
T cd04035 4 LEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQR 83 (123)
T ss_pred EEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCC
Confidence 4678899999999999999999999998889999999999843 47899999999999999999996332 11 23
Q ss_pred cEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeec
Q 004037 347 NVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 347 ~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
..|.|+|||++.+++++||++.++|+++..+...+.|+.|
T Consensus 84 ~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 84 KTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 5899999999888889999999999999987776666543
No 78
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=4.6e-15 Score=137.36 Aligned_cols=100 Identities=24% Similarity=0.445 Sum_probs=88.0
Q ss_pred CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccC-CCc
Q 004037 302 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR 379 (777)
Q Consensus 302 ~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~-~~~ 379 (777)
.+|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ....|.|.|||.+.+++++||.+.++|+++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 478999999999987 468999999999999999999998753 35679999999998889999999999999854 344
Q ss_pred cceeeeccCCCCcEEEEEEEEEe
Q 004037 380 HDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 380 ~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
.+.|++|.+...|+|++++.|.|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 68999999878999999999986
No 79
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=3.6e-15 Score=141.99 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=83.1
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
....|.|+|+|++|++|+. +..+.+||||+|++++++++|+++++++||+|||+|.|........+.|.|+|||+|.++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3567999999999999984 667889999999999999999999999999999999997544334678999999999986
Q ss_pred -CceeEEEEEeCCccc
Q 004037 361 -DDTLGDCTINISDLR 375 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~ 375 (777)
|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 999999999999655
No 80
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=4.5e-15 Score=137.09 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=87.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCC---CCcEEEEEEeecCCCC
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e---~~~~L~V~V~D~D~~~ 360 (777)
...|+|+|++|++|+ +|.+||||++++++++.+|+++++++||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999998 578999999999999999999999999999999999875321 1357999999999886
Q ss_pred -CceeEEEEEeCCcccCCCc---cceeeeccC
Q 004037 361 -DDTLGDCTINISDLRDGQR---HDMWIPLQN 388 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~---~~~W~~L~~ 388 (777)
+++||++.++|+++..+.. ...|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999976533 577999853
No 81
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=3.1e-15 Score=140.61 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=94.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCcccceeeEecccCC---CCcEEEEEEeecCCCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~-~TlnP~WnEtF~f~V~~~e---~~~~L~V~V~D~D~~~ 360 (777)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4889999999999998889999999999988 899999975 5899999999999997642 2578999999999865
Q ss_pred -CceeEEEEEeCCcccCCCc-----cceeeeccC---CCCcEEEE
Q 004037 361 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL 396 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~-----~~~W~~L~~---~~~GeI~L 396 (777)
|++||++.++|.++..+.. ...|+.|.. ...|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999999999887654 368999975 34787764
No 82
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=3.9e-16 Score=169.15 Aligned_cols=115 Identities=35% Similarity=0.532 Sum_probs=102.8
Q ss_pred eeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 278 VDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 278 L~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
|+.......|+|+|.+|+||.++|.+|.+||||++.+-+ .+.+|++++.|+||+|||+|+|.+.+.+..+.|.|+
T Consensus 173 l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiE 252 (683)
T KOG0696|consen 173 LEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIE 252 (683)
T ss_pred EEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEE
Confidence 333445678999999999999999999999999999965 578999999999999999999999987777899999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcE
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~Ge 393 (777)
|||||+.+ +||||..++.+++|.... .+.||.|.+...|+
T Consensus 253 vWDWDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 253 VWDWDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred EecccccccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 99999987 999999999999998754 67999998877776
No 83
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.60 E-value=1.2e-14 Score=142.72 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=95.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcccceeeEecccCC-------CCcEEEEE
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-----g~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-------~~~~L~V~ 352 (777)
+.|+|....+-+|+..+.++.+||||++++ .++++||+++++|+||+|||+|.|.+.... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444554444444778888889999999997 237999999999999999999999987431 13579999
Q ss_pred EeecCCC--CCceeEEEEEeCCcccCCCccceeeeccC-C--CCcEEEEEEEEEe
Q 004037 353 VRDKDHF--VDDTLGDCTINISDLRDGQRHDMWIPLQN-I--KIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~--~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-~--~~GeI~LsL~y~p 402 (777)
|||++.+ +|++||++.++|+.+........|++|.. . ..|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999986 39999999999999988777778999864 2 3899999998764
No 84
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1e-14 Score=134.85 Aligned_cols=101 Identities=39% Similarity=0.625 Sum_probs=91.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++++|.|||+|.|.+... ..+.|.|+|||++..+ +++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 579999999999998889999999999976 568999999999999999999998753 3578999999999886 9999
Q ss_pred EEEEEeCCcccCCCccceeeeccC
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|++.+++.++..+...+.|++|..
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcC
Confidence 999999999988878899999975
No 85
>PLN03008 Phospholipase D delta
Probab=99.59 E-value=8.2e-15 Score=172.35 Aligned_cols=122 Identities=23% Similarity=0.372 Sum_probs=106.4
Q ss_pred ceeEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EE
Q 004037 283 PVAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RF 319 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~------------------------------------------~G~sDPYV~v~Lg~~-k~ 319 (777)
-.|.|.++|.+|++|+.+|. .+++||||+|.++.+ +.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 47999999999999986332 246799999999874 67
Q ss_pred EeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCC------CCcE
Q 004037 320 RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGR 393 (777)
Q Consensus 320 kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~Ge 393 (777)
||+++++++||+|||+|.|.+... ...|.|+|||+|.+++++||++.|||.++..+...+.|++|.+. ..|+
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k 169 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA 169 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence 999999999999999999999863 46899999999999999999999999999999989999999652 3689
Q ss_pred EEEEEEEEecCCC
Q 004037 394 LHLAITVLEESAK 406 (777)
Q Consensus 394 I~LsL~y~p~s~~ 406 (777)
|+|+++|.|....
T Consensus 170 l~v~lqf~pv~~~ 182 (868)
T PLN03008 170 IFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEEEcccc
Confidence 9999999997654
No 86
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.58 E-value=1.9e-14 Score=140.02 Aligned_cols=93 Identities=31% Similarity=0.592 Sum_probs=85.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
.|.|+|+|++|++|+..+. +.+||||++++++++++|+++++++||.|||+|.|.+... ...|.|+|||++.++ |+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 3789999999999999887 8999999999999999999999999999999999999863 578999999999987 99
Q ss_pred eeEEEEEeCCcccCCCc
Q 004037 363 TLGDCTINISDLRDGQR 379 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~ 379 (777)
+||++.++|.++.....
T Consensus 78 ~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 78 SMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEEEEEHHHhhhhhh
Confidence 99999999998876543
No 87
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.58 E-value=1e-14 Score=140.42 Aligned_cols=102 Identities=28% Similarity=0.438 Sum_probs=90.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCcccceeeEecccCC--------------CCcE
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV 348 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--------------~~~~ 348 (777)
|+|+|++|++|+.+ ..|.+||||+++++ .++++|+++.++.||.|||+|.|.+.... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 67899999999999999999999987531 2458
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
|.|+|||++.++ +++||++.++|.++........|++|+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999985 99999999999999877778999999864
No 88
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3e-14 Score=131.86 Aligned_cols=108 Identities=32% Similarity=0.461 Sum_probs=86.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|++|+.. +.+||||+++++++ .++|+++++ +||.|||+|.|.+...+ ....|.|.+||.+... +..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999884 589999999 99999999999987533 2346888888887654 556
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
+|.+. |..+..+...+.|++|.+. ..|+|+|++.|
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66554 5555556678899999863 37999999876
No 89
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=2.2e-14 Score=135.52 Aligned_cols=115 Identities=29% Similarity=0.380 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k--~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
+|+|+|++|++|+..|..|.+||||+++++++. .+|+++++|+||.|||+|.|.+... ..+.|.|+|||+|.++ |+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 479999999999999999999999999998854 5788899999999999999987643 3568999999999986 99
Q ss_pred eeEEEEEeCCcccCCCccceeeeccC--CCCcEEEEEEEEEe
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE 402 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~--~~~GeI~LsL~y~p 402 (777)
+||++.++|++.... .+..|.-+.. ...|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCCCcccccCceecCcccCc
Confidence 999999999977642 2223333322 24666665554443
No 90
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=5e-14 Score=133.29 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=90.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
..|.|+|.+|+ |...+..+.+||||+++++.+ .++|+++++|+||.|||+|.|.+.. .+.|.|+|||++..+ |+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence 36899999998 555555788999999999886 8999999999999999999999863 468999999999986 99
Q ss_pred eeEEEEEeCCcccCCCc-----cceeeeccCC------CCcEEEEEE
Q 004037 363 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI 398 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~-----~~~W~~L~~~------~~GeI~LsL 398 (777)
+||++.++|+++..... ...|++|... ..|+|++.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999875432 2348888532 278887765
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.54 E-value=1.1e-13 Score=134.73 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=95.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC-C--
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F-- 359 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~-~-- 359 (777)
...|.|.|++|++|++++ +|||.|.|+..+ .||+++.++.||.|+|+|.|.... ....|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCcccc
Confidence 467999999999999764 899999999965 699999999999999999997654 24679999986543 2
Q ss_pred --CCceeEEEEEeCCcccCCCccceeeeccCCC-------------CcEEEEEEEEEec
Q 004037 360 --VDDTLGDCTINISDLRDGQRHDMWIPLQNIK-------------IGRLHLAITVLEE 403 (777)
Q Consensus 360 --~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-------------~GeI~LsL~y~p~ 403 (777)
++++||.+.||+.++..+...+.||+|.+.. .+.|++++.|.+.
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 4789999999999999888899999997521 3689999999874
No 92
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=7.9e-14 Score=130.75 Aligned_cols=93 Identities=26% Similarity=0.381 Sum_probs=74.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec-----
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK----- 356 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~----- 356 (777)
|.|+|++|+||+ +.+||||++++++ .+++|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence 689999999996 5699999999964 46999999999999999999999873 57999999998
Q ss_pred --CCCC-CceeEEEEEeCCc--ccCCCccceeeecc
Q 004037 357 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387 (777)
Q Consensus 357 --D~~~-Dd~IG~v~I~L~~--L~~~~~~~~W~~L~ 387 (777)
|..+ |++||.+.+.|+. +.....+..-+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 3445 9999998888763 33333344445553
No 93
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=1.2e-13 Score=133.24 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=90.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-cceeeEecccCCCCcEEEE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI 351 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------------~k~kTkVi~~TlnP~W-nEtF~f~V~~~e~~~~L~V 351 (777)
+..|++++|++|+ ++..|.+||||++++.+ ++++|+++++|+||.| ||+|.|.+.. .+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence 4678999999998 77789999999999954 3689999999999999 9999999863 468999
Q ss_pred EEeecCCCC----CceeEEEEEeCCcccCCC---ccceeeeccCC-----CCcEEEEEE
Q 004037 352 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI 398 (777)
Q Consensus 352 ~V~D~D~~~----Dd~IG~v~I~L~~L~~~~---~~~~W~~L~~~-----~~GeI~LsL 398 (777)
+|||++..+ +++||++.++|.++..+. ....|++|... -+|+|.+.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999986532 699999999999987553 35678998753 268887765
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.51 E-value=8.8e-15 Score=140.41 Aligned_cols=111 Identities=10% Similarity=0.001 Sum_probs=89.1
Q ss_pred EEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCC-CcccccccccccCCC
Q 004037 393 RLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSVSSE 455 (777)
Q Consensus 393 eI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~-nP~~Ne~~~~~~~s~ 455 (777)
+|+++|+|.|+++++++ .++|++.+| .++.++++|+||+++++|+ ||+|||+|.|+++.+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~ 78 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ 78 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEE---EECCCcceeecCccEECCCCCceecceEEEeCCch
Confidence 78999999998887764 255888877 5667789999999999995 699999999999876
Q ss_pred CCcCcccceeeeecCC--ceee-ceEEecc---CcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIWVHQP---GSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~v~~p---g~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
. ..+...+++.|.++ .++. |-++-++ +.+..+||.+|+.+||+|++|||..
T Consensus 79 ~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 79 E-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred h-heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 4 46888899999875 5555 6554333 3344599999999999999999963
No 95
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.49 E-value=9.8e-14 Score=129.92 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=83.7
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC----C
Q 004037 291 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F 359 (777)
Q Consensus 291 VieAk~L~~~D~~G~sDPYV~v~Lg~~-------k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~----~ 359 (777)
.++|++|+..+..|.+||||++++.+. .++|+++++|+||.|||+|.|.+.. +..+.|.|+|||+|. +
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence 478999999998999999999999664 4899999999999999999998653 235689999999997 5
Q ss_pred C-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
+ +++||++.+++.++..+.....|+.|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 5 999999999999998877777888884
No 96
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.48 E-value=6.7e-14 Score=177.66 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=105.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVD 361 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~D 361 (777)
-.|.|+|+|++|.+|. +..|.+||||++.++++ +.||++++++.||.|||+|+|.+..+...+.|+|+|||+|.|++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3699999999999998 44689999999999975 88999999999999999999887765445679999999999998
Q ss_pred ceeEEEEEeCCcccCCCccceeeeccC--CCCcE---EEEEEEEEe
Q 004037 362 DTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE 402 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~~~W~~L~~--~~~Ge---I~LsL~y~p 402 (777)
+.||++.|+|.++..++....||+|.+ .+.|+ |++++.|.+
T Consensus 2056 d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2056 SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 899999999999999999999999986 56898 999998864
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.47 E-value=5.5e-13 Score=125.21 Aligned_cols=111 Identities=23% Similarity=0.486 Sum_probs=92.5
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCcccceeeEecccCCCCcEEEEEEeec
Q 004037 286 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D--~~G~sDPYV~v~Lg------~~k~kTkVi~~Tl-nP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
.|+|+|++|++|+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+...+ ...|.|+|||.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 6899999999999887 57899999999993 4678999988776 9999999999987432 35799999999
Q ss_pred CCCCCceeEEEEEeCCcccCCCccceeeeccC-----CCCcEEEEEEEE
Q 004037 357 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV 400 (777)
Q Consensus 357 D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~y 400 (777)
+..++++||++.++|+++..+. .|++|.+ ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 9888999999999999996543 5788864 236788888764
No 98
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.8e-14 Score=149.52 Aligned_cols=235 Identities=20% Similarity=0.226 Sum_probs=174.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecc--cCCC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS--TWDS 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~--~~e~ 345 (777)
..||.+.|+.....+.++|..|++|++++.++..|||+++.+++ .+++|++..+++||.|||+-..... ..-.
T Consensus 81 ~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 81 ALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred chhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 35889999999999999999999999999999999999999987 4689999999999999987655432 2213
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCc--cceeeeccC----------CCCcEEEEEEEEEecCCCccc---
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR--HDMWIPLQN----------IKIGRLHLAITVLEESAKQGV--- 409 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~--~~~W~~L~~----------~~~GeI~LsL~y~p~s~~lsv--- 409 (777)
.+.+++.|+|.+.+. .+++|+..++|..+...+. ...|+.-.- ..+|+|.+++.|......+.+
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~i 240 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTII 240 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEE
Confidence 457899999999987 8999999999998876553 234443211 248999999988765443321
Q ss_pred -------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC-C-cee
Q 004037 410 -------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE-G-QQE 474 (777)
Q Consensus 410 -------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~-G-~ee 474 (777)
.++|++..+. -++.+.-++||.++|.|+||.||+.|+++..+..+-.....+.+-|.+ | ...
T Consensus 241 Rc~~l~ssDsng~sDpyvS~~l~---pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d 317 (362)
T KOG1013|consen 241 RCSHLASSDSNGYSDPYVSQRLS---PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSND 317 (362)
T ss_pred EeeeeeccccCCCCCccceeecC---CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCcc
Confidence 4778877774 455555678999999999999999999998777665555555554443 2 111
Q ss_pred e-ceEEecc--CcccccccccccCCCCcccceeeecCCC
Q 004037 475 T-GIWVHQP--GSEVAQTWEPRKGKNRRLDTLVRRVPNG 510 (777)
Q Consensus 475 ~-gi~v~~p--g~~v~~~w~~~~~~~r~~~~~~~~~~~~ 510 (777)
. |+...+. =.++-.||-.-+...+-+...||++..+
T Consensus 318 ~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 318 SIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred CCCcccccccccchhhcCccccccccccccccccccccc
Confidence 1 2221111 1245588888888888888999988754
No 99
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.41 E-value=9.9e-14 Score=133.99 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=91.3
Q ss_pred CcEEEEEEEEEecCCCccc------------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc
Q 004037 391 IGRLHLAITVLEESAKQGV------------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 452 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv------------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~ 452 (777)
.|+|+++|+|.+.++++.+ .+||++.+| ..+..+++++||+++++++||+|||.|.|..
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v 77 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWNEMIMFEL 77 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccccEEEEEC
Confidence 4899999999988776543 367787777 3445678899999999999999999999999
Q ss_pred CCCCCcCcccceeeeecCCc--eee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 453 SSEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~G~--ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.++...+...+++.|.++. ++. |-. ....|.+. +||.+|..+||+|+++||..
T Consensus 78 ~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~-~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 78 PSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTER-QHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred CHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHH-HHHHHHHhCCCCchhEEEEC
Confidence 99999998889999988843 444 433 23345554 99999999999999999974
No 100
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.40 E-value=1.5e-12 Score=119.77 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccC---CCCcEEEEEEeecCCC
Q 004037 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDHF 359 (777)
Q Consensus 289 VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~---e~~~~L~V~V~D~D~~ 359 (777)
+-.++|++|+..|..|.+||||++++.+ ..++|+++++++||.|| +|.|.+... +..+.|.|+|||++.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456999999999999999999999854 35899999999999999 788876432 2256899999999998
Q ss_pred C-CceeEEEEEeCCcccCCC
Q 004037 360 V-DDTLGDCTINISDLRDGQ 378 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~ 378 (777)
+ |++||++.++|+++....
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCC
Confidence 6 999999999999988543
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.29 E-value=7e-12 Score=107.82 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=72.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|+|+|++|++|+..+..+..||||++.++. ..++|+++.++.+|.|||+|.|.+...+ ...|.|+|||++.++ |+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 789999999999988888999999999977 6799999999999999999999976543 345999999999998 99
Q ss_pred eeEEEE
Q 004037 363 TLGDCT 368 (777)
Q Consensus 363 ~IG~v~ 368 (777)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 102
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.6e-12 Score=141.03 Aligned_cols=189 Identities=23% Similarity=0.360 Sum_probs=137.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC----
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF---- 359 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~---- 359 (777)
...++++|+.|+||.++|..|++||||+..++..+.+|+++...+||+|||.|+|++++ ..+.+.+.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHH
Confidence 35788999999999999999999999999999999999999999999999999999997 457899999998752
Q ss_pred --------CCceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEEecCCCccccCCCcCCcccccCCCcc
Q 004037 360 --------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNK 426 (777)
Q Consensus 360 --------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~~ 426 (777)
+|||+|+..|.+..+.. ..+.||.|+.. -.|.|+|.+.+.-..+.-. .||..-+.
T Consensus 372 lrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeekv--apyhvqyt-------- 439 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKV--APYHVQYT-------- 439 (1283)
T ss_pred HHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCcccc--ccceeeeh--------
Confidence 38999999999887664 46889999752 3799999888776554322 13321100
Q ss_pred ccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCceeeceEEeccCcccccccccccCCC---------
Q 004037 427 EDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKN--------- 497 (777)
Q Consensus 427 ~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ee~gi~v~~pg~~v~~~w~~~~~~~--------- 497 (777)
.. -|..|... . ..-++..-+.+|.+...+|..-.|+++...+.-|.|..
T Consensus 440 -------cl---------henlfh~~-----~-~~~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthf 497 (1283)
T KOG1011|consen 440 -------CL---------HENLFHAH-----T-DDGEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHF 497 (1283)
T ss_pred -------hH---------hhhhHHhh-----h-cccceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 01111000 0 00123333456777777777777888877777777743
Q ss_pred CcccceeeecC
Q 004037 498 RRLDTLVRRVP 508 (777)
Q Consensus 498 r~~~~~~~~~~ 508 (777)
-|+-++++|..
T Consensus 498 acl~skymcpg 508 (1283)
T KOG1011|consen 498 ACLSSKYMCPG 508 (1283)
T ss_pred HHHhhcccCCC
Confidence 46777777765
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.21 E-value=1e-10 Score=101.43 Aligned_cols=99 Identities=44% Similarity=0.831 Sum_probs=86.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|.|+|++|++|......+..+|||.+.+.. ..++|+++.++.||.|||.|.|.+... ....|.|+||+.+... +.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 578999999998766677899999999988 899999999999999999999998852 3568999999999886 8999
Q ss_pred EEEEEeCCccc-CCCccceeeec
Q 004037 365 GDCTINISDLR-DGQRHDMWIPL 386 (777)
Q Consensus 365 G~v~I~L~~L~-~~~~~~~W~~L 386 (777)
|.+.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 66667788865
No 104
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.2e-11 Score=136.27 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=95.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~ 346 (777)
...|+|.|.+..|.|+|.|++|++|+.++.++.+||||++++-. .+.+|.+.++++||+|||+|.|.++.... .
T Consensus 286 el~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 286 ELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred eEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 56799999999999999999999999999999999999999843 57899999999999999999998885332 3
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
-.|.|+|||+|.++ +++||.+.+.... .+.....|..+.
T Consensus 366 ~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 366 VSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred eEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 47999999999998 8899999888775 333345565543
No 105
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.19 E-value=1e-11 Score=119.66 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=87.1
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.++|+|.+...++.+ .++|++.+|. .+..++.++||+++++++||+|||+|.|.++.+
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~---~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLL---QDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE---eCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 889999999887766543 4777777772 234566788999999999999999999999888
Q ss_pred CCcCcccceeeeecCC--ceee-ceEEec---cCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIWVHQ---PGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~v~~---pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.......+.+.|.++ ..+. |-.+-+ .|.+ .+||..|..+||+++++||..
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~-~~hW~~ml~~~~~~v~~WH~l 135 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMG-LSHWNQMLASLRKPVAMWHPL 135 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChh-HHHHHHHHHCCCCeeeEeeec
Confidence 8888888899998874 3333 433222 3433 499999999999999999964
No 106
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.17 E-value=1.9e-10 Score=100.78 Aligned_cols=94 Identities=39% Similarity=0.614 Sum_probs=81.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~---k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|++|++|......+..+|||++++... .++|+++.++.||.|||+|.|.+.... .+.|.|+|||.+... +.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 6799999999988776678899999999874 899999999999999999999988632 678999999998876 89
Q ss_pred eeEEEEEeCCcccCCCccc
Q 004037 363 TLGDCTINISDLRDGQRHD 381 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~ 381 (777)
++|.+.++|.++..+....
T Consensus 81 ~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eeEEEEEEHHHcccCcccc
Confidence 9999999999887765443
No 107
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.12 E-value=2.6e-10 Score=109.56 Aligned_cols=93 Identities=30% Similarity=0.464 Sum_probs=78.3
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CcccceeeEecccC--------------
Q 004037 287 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTW-------------- 343 (777)
Q Consensus 287 L~VtVieAk~L~~~D--~~G--~sDPYV~v~Lg~---~k~kTkVi~~Tln--P~WnEtF~f~V~~~-------------- 343 (777)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+.+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 356 499999999965 6799999999999 99999999876641
Q ss_pred -------C-CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCc
Q 004037 344 -------D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 344 -------e-~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~ 379 (777)
. ....|.++|||.|.++ |++||+++++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 1 2458999999999997 9999999999998887653
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.08 E-value=4.1e-10 Score=135.09 Aligned_cols=108 Identities=35% Similarity=0.541 Sum_probs=96.5
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~ 359 (777)
-.+.|.|+|.+..|.||+..|.+|.+||||++.+... .++|+++++|+||+|||+|.+++.+. ....|.+.|+|+|..
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG 1114 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC
Confidence 3468999999999999999999999999999999874 89999999999999999999999853 457899999999987
Q ss_pred C-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
. ++.||.+.++|..+..+.....-++|.+.
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCc
Confidence 6 99999999999999988776666777654
No 109
>PLN02270 phospholipase D alpha
Probab=99.07 E-value=1.2e-09 Score=129.44 Aligned_cols=120 Identities=18% Similarity=0.352 Sum_probs=103.4
Q ss_pred eeEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCcccceeeEecccC
Q 004037 284 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW 343 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D------------------~~G~sDPYV~v~Lg~-~k~kTkVi~~T-lnP~WnEtF~f~V~~~ 343 (777)
.|.|.|+|.+|++|+.++ ..+.+||||++.++. ...||+++.+. .||.|||+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 699999999999998632 125789999999987 78899999884 6999999999999863
Q ss_pred CCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCCC------CcEEEEEEEEEecCC
Q 004037 344 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK------IGRLHLAITVLEESA 405 (777)
Q Consensus 344 e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~------~GeI~LsL~y~p~s~ 405 (777)
...+.|.|.|.|.++..+||.+.+|..++..+...+.|+++.+.. .-+|+++++|.+...
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 467999999999999999999999999999998899999996532 349999999988544
No 110
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.02 E-value=1.4e-10 Score=111.62 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred CcEEEEEEEEEecCCCccc---------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 391 IGRLHLAITVLEESAKQGV---------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv---------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
.|+|+|+|+|.+...++.+ .++|++..+. .+..+.+++||++++++.||+|||.|.|..+.+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~---~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLM---IHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEE---ECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 3788888888876665543 3556665552 123345678999999999999999999999888
Q ss_pred CCcCcccceeeeecCCc--eee-ceEEecc-----CcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEGQ--QET-GIWVHQP-----GSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G~--ee~-gi~v~~p-----g~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.+.....+++.+.++. ++. |-..-++ |.+. +||.+|..+||.++++||..
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~-~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKEL-EHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHH-HHHHHHHhCCCCceeEEEeC
Confidence 88777777888887743 333 4443332 4444 99999999999999999975
No 111
>PLN02223 phosphoinositide phospholipase C
Probab=98.97 E-value=4.1e-09 Score=120.59 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=87.3
Q ss_pred eEEEEEEEEecCCCCC-----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEe
Q 004037 285 AYARVEVVEASDMKPS-----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 285 G~L~VtVieAk~L~~~-----D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~ 354 (777)
..|.|+|+.|++++.. +.....||||+|.+.+ .+.+|++..|+.||.|||+|.|.+..++ -..|+|+||
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEEE
Confidence 5799999999987521 2234679999999954 4678888889999999999999998654 347999999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEE
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y 400 (777)
|+|... ++++|++.+|+..|..|. .+++|.+.. .-.|.+++.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999876 999999999999999887 456775432 3455555543
No 112
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.89 E-value=9.9e-10 Score=125.58 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=90.0
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcccceeeEecccCC---C
Q 004037 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD---S 345 (777)
Q Consensus 276 fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~~TlnP~WnEtF~f~V~~~e---~ 345 (777)
....|......|.|.|+.|+++.+.|.||.+||||.|.++| ...+|+|+.+|+||+|+|+|+|.|+... .
T Consensus 938 vr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te 1017 (1103)
T KOG1328|consen 938 VRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTE 1017 (1103)
T ss_pred EEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccc
Confidence 34578888999999999999999999999999999999998 3579999999999999999999998532 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~ 376 (777)
.-.|+|+|+|+|-.+ +||-|++.+.|+++..
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 347999999999997 9999999999998865
No 113
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.88 E-value=7.8e-10 Score=106.82 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=82.9
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.++|.|.+..+++.+ .++|++.++.+ ....++.++||++++++.||+|||+|.|..+.+
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp--~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLN--SDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEe--CCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 566677776665555433 46777776621 122345678999999999999999999999888
Q ss_pred CCcCcccceeeeecCC--ceee-ceE-E--eccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~-v--~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.......+.+.|.++ .++. |-. + ...|.+..+||..+..+||+++++||..
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l 137 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL 137 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence 8888888899998873 3333 432 2 2234445589999999999999999963
No 114
>PLN02952 phosphoinositide phospholipase C
Probab=98.86 E-value=2e-08 Score=117.03 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=83.1
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~------D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.|++|+.. +.....||||++.+-+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 46899999999987532 1123459999999843 5779999999999999999999988643 3479999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|||+|..+ ++++|++.+||..|..|. .|++|.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999876 999999999999999987 4888875
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.82 E-value=1.3e-09 Score=124.66 Aligned_cols=124 Identities=26% Similarity=0.486 Sum_probs=101.2
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------e------------------EEEeeeecCCCCC
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------Y------------------RFRTKTQRKTLSP 330 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------------~------------------k~kTkVi~~TlnP 330 (777)
+|.-.|.|.+.+|+||.++|.+|.+||||...+.+ + ..-|.|.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 34556778899999999999999999999987633 0 1247889999999
Q ss_pred cccceeeEecccCCCCcEEEEEEeecCC---------------------------------C----CCceeEEEEEeCCc
Q 004037 331 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------F----VDDTLGDCTINISD 373 (777)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~V~D~D~---------------------------------~----~Dd~IG~v~I~L~~ 373 (777)
+|+|.|.|.|.+. ..+.+++.+||+|. . .|||+|.+.|||.+
T Consensus 191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999875 45789999999871 0 17999999999999
Q ss_pred ccCCCccceeeeccCC-----CCcEEEEEEEEEecCCCc
Q 004037 374 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQ 407 (777)
Q Consensus 374 L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~s~~l 407 (777)
+.... .++||.|+.. -+|.++|.+++......-
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeeecccc
Confidence 98764 7899999863 389999999987765443
No 116
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.78 E-value=3.3e-09 Score=101.78 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|+++|+|.+..+.+.+ .+||++.++ ..+....+++||.+++++.||+|||+|.|..+.+
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l---~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQL---VHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEE---EcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 678888888766554432 355665554 1233455678999999999999999999998777
Q ss_pred CCcCcccceeeeecCC--ceee-ceE-Ee--ccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~-v~--~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.+.....+++.|.+. ..+. |-. +. ..|.....||..++.++++|+++||..
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 7766556677777763 3333 432 21 233333599999999999999999963
No 117
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.74 E-value=5.5e-08 Score=113.24 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=86.9
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~------D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.+++++.. +.....||||+|.+-+ .+.+|++..++.||.|||+|.|.+.-++ -..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence 46899999999987421 2223579999999832 4678999999999999999999988544 3579999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEE
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y 400 (777)
|+|+|... |+++|++.+|+..|..|.+ .++|.+.. .-.|.+++.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99999865 9999999999999999875 45665432 2345555543
No 118
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.73 E-value=5.6e-09 Score=99.92 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=79.3
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|++++.|.+..+.+.+ .+||++..+. .+.....+++|.++++++||+|||.|.|..+.
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM---QNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEE---ECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 3788888888776655432 3455554441 12233456789999999999999999888876
Q ss_pred CCCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeee
Q 004037 455 EKSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
++.+.....++..|.+ |.++. |-. +...|.+. .||.++...|+.|+++||.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~-~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAEL-RHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChHH-HHHHHHHhCCCCeeeEEEE
Confidence 6665555667888876 34443 443 44556655 9999999999999999995
No 119
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.72 E-value=6.4e-09 Score=99.28 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=77.7
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.+++.|.+....+.+ .++|++..+. ....+.+++||.++++++||+|||.|.|..+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~ 77 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLM---CEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEE---eCCcccceecCCcccCCCCCcccceEEEECCHH
Confidence 667777777666554432 3556555541 133345678999999999999999998887766
Q ss_pred CCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeee
Q 004037 456 KSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 456 ~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
........+++.|.+ |.++. |-. ...+|.+ ..||.++..+++++++|||.
T Consensus 78 ~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~-~~~w~~~~~~~~~~~~~wh~ 133 (134)
T cd08403 78 NVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQG-REHWNEMLANPRKPIAQWHQ 133 (134)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEECCCCCCch-HHHHHHHHHCCCCeeeEeec
Confidence 665555568888876 44554 544 2344444 38999999999999999995
No 120
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.67 E-value=5.6e-08 Score=89.31 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCc
Q 004037 287 ARVEVVEASDMKPSD---LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D---~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd 362 (777)
|.|+|..|+++.-.+ ..+.+||||.+.++. +++||++ +.||.|||+|.|.+. ....+.|.|||+..-..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 679999999998777 578899999999988 5899987 489999999999995 467899999998765567
Q ss_pred eeEEEEEeCCcccCC
Q 004037 363 TLGDCTINISDLRDG 377 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~ 377 (777)
.||..-+.|++|...
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 889999998887643
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.67 E-value=1.7e-07 Score=108.98 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=81.1
Q ss_pred eeEEEEEEEEecCCC--CC----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMK--PS----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~--~~----D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.+++++ .. +.....||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 357999999998753 11 1234579999999843 5789999999999999999999887543 3579999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|||+|... ++++|++.+|+..|..|.+ .++|.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 99999866 9999999999999999874 456654
No 122
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.66 E-value=8.2e-08 Score=112.13 Aligned_cols=112 Identities=27% Similarity=0.495 Sum_probs=88.2
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCcccceeeEecccCCCCcEEEEEEee
Q 004037 286 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D----~~G~sDPYV~v~Lg~-----~k~kTk-Vi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D 355 (777)
+|+|.|+.+++++..- .+..+||||.+++-+ ...+|+ |..|+.||.|+|+|+|.+.-++. ..|+|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 6999999999775432 235689999999844 578999 56779999999999999986543 479999999
Q ss_pred cCCCC-CceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEE
Q 004037 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 356 ~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
+|..+ |||+|+..+|+..|..|.++ ++|.+. ..-.|.+++.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 99988 99999999999999998755 566543 134555555544
No 123
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.64 E-value=1.8e-08 Score=96.58 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=80.3
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|.++++|.+....+.+ .+||++..+. .+..++.++||+++++++||+|||.|.|..+.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~---~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~ 77 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLY---YGKKRISKKKTHVKKCTLNPVFNESFVFDIPS 77 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEE---cCCceeeeEcCccccCCCCCccCceEEEECCH
Confidence 4788888888765554432 3556655541 12334567899999999999999999998877
Q ss_pred CCCcCcccceeeeecCCc--eee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 455 EKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G~--ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
........++++.|.+.. .+. |-. +...+.+ .+||.++...|++++++||..
T Consensus 78 ~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~-~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 78 EELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSG-GHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred HHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCch-HHHHHHHHhCCCCeeeEEEec
Confidence 777666677888887743 333 433 3334443 499999999999999999964
No 124
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.64 E-value=2.5e-08 Score=94.04 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=62.4
Q ss_pred cEEEEEEEEEecCCCccc-------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCc
Q 004037 392 GRLHLAITVLEESAKQGV-------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 458 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv-------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~ 458 (777)
|+|+++|+|.+..+.+++ .+||++..|. .+.+ ..++||+++++|+||+|||+|.|.++.++++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~---~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVS---VSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEc---CCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 567888888777765443 5888888872 2222 3567999999999999999999999999999
Q ss_pred CcccceeeeecCCcee
Q 004037 459 KVADNFEPINIEGQQE 474 (777)
Q Consensus 459 kv~~~~e~id~~G~ee 474 (777)
.....+.+.|.|.-..
T Consensus 77 ~~tL~~~V~d~Drfs~ 92 (118)
T cd08677 77 DGTLTLTLRCCDRFSR 92 (118)
T ss_pred CcEEEEEEEeCCCCCC
Confidence 9999999999885433
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=98.64 E-value=1.6e-07 Score=108.94 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=89.7
Q ss_pred eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-cceeeEecccCCCCcEEEEE
Q 004037 285 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~---~D---~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~W-nEtF~f~V~~~e~~~~L~V~ 352 (777)
..|+|+|++|++|+. .+ .....||||++.+.+ .+++|+++.++.||.| ||+|.|.+..++ -..|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEEE
Confidence 479999999998731 11 123479999999843 5689999999999999 999999987644 3479999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEEec
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 403 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~ 403 (777)
|+|+|... ++++|++.+|+..|..|.+ .++|.+. ....|.+++.+.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99999775 9999999999999998774 4566543 24567777776653
No 126
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=106.57 Aligned_cols=116 Identities=23% Similarity=0.438 Sum_probs=97.7
Q ss_pred eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCccc-ceeeEecccCC-CCcEEEEEEeecCCCC-
Q 004037 285 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~Wn-EtF~f~V~~~e-~~~~L~V~V~D~D~~~- 360 (777)
|.|.|.|..|++|+.+|. ....|.||.+.+++..+||.|..+++||.|| +.|.|++.+.+ +...|.|.+.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999985 4567999999999999999999999999999 56899998654 3457999999999998
Q ss_pred CceeEEEEEeCCcccCC----------CccceeeeccCC---CCcEEEEEEEE
Q 004037 361 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAITV 400 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~----------~~~~~W~~L~~~---~~GeI~LsL~y 400 (777)
+|-||.+.|+++.+... .....|+++.+. -+|+|.+-+.+
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 99999999999987542 235679998763 38898876653
No 127
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.59 E-value=3.1e-08 Score=94.83 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=78.7
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.++++|.+....+.+ .++|++..+. .+..+..++||.+.+++.||.|||.|.|..+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~ 77 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLM---YKDKRVEKKKTVIKKRTLNPVFNESFIFNIPL 77 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEE---eCCCccccccCcceeCCCCCcccceEEEeCCH
Confidence 4778888887766554432 3555555441 12334556899999999999999999888766
Q ss_pred CCCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 455 EKSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+........+++.|.+ |.++. |-. +...|.+. +||.++...|..|+++||..
T Consensus 78 ~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~-~~w~~~~~~~~~~~~~wh~l 135 (136)
T cd08405 78 ERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLEL-KHWKDMLSKPRQPVAQWHRL 135 (136)
T ss_pred HHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCchH-HHHHHHHhCCCCchhEEEec
Confidence 6555555567787776 34444 544 33445554 99999999999999999963
No 128
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.52 E-value=2.6e-07 Score=107.21 Aligned_cols=113 Identities=22% Similarity=0.303 Sum_probs=87.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eE-EEeeeecCCCCCccc-ceeeEecccCCCCcEEEEEEeecC
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YR-FRTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k-~kTkVi~~TlnP~Wn-EtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
-.|.|.|+.|+.|+... .|-..|||.|.+.+ .+ ++|.|..|.+||+|| |+|+|.|.+++ -..|+|.|||.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-FAFLRFVVYEED 1142 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc-eEEEEEEEeccc
Confidence 46889999999998543 35567999999843 34 455667889999999 99999999754 458999999999
Q ss_pred CCC-CceeEEEEEeCCcccCCCccceeeeccCCCC-----cEEEEEEEEEe
Q 004037 358 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----GRLHLAITVLE 402 (777)
Q Consensus 358 ~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~-----GeI~LsL~y~p 402 (777)
.++ ..|||++.+|+..+..+- ..++|++.-. ..|++.+...+
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred ccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEecc
Confidence 998 579999999999998765 4577877543 34455555444
No 129
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.40 E-value=3.6e-07 Score=109.51 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=94.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC--C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~ 345 (777)
+...++.|. .|+|.|-|.-|++|+-..-+..+||||+.+|.+ .+.||+++++|.||.|||.......+.+ .
T Consensus 1514 qV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1514 QVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred eEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 345666665 899999999999996554467799999999977 4789999999999999999876632211 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.+.|.+.||..+.+. +.++|.+.|+|.++...+....||.|..
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 468999999999887 8999999999999988777779999864
No 130
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.33 E-value=2.7e-07 Score=87.77 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=65.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--Cceee-ceE-E--eccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GIW-V--HQPG 483 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~-gi~-v--~~pg 483 (777)
.++|++..+.. ...+..++||.++++++||+|||.|.|..+..+.......+++.|.+ +.++. |-. + ...|
T Consensus 34 ~DpyV~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 34 SDPFVKLYLKP---DAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKG 110 (133)
T ss_pred CCcEEEEEEEc---CCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCC
Confidence 46777666521 12234568999999999999999999987766555555667777766 33344 544 2 2223
Q ss_pred cccccccccccCCCCcccceeee
Q 004037 484 SEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 484 ~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
. -..||-++..+|++++++||.
T Consensus 111 ~-~~~~W~~~l~~~~~~~~~wh~ 132 (133)
T cd08384 111 E-RLRHWLDCLKNPDKKIEAWHT 132 (133)
T ss_pred c-hHHHHHHHHhCCCCChheeec
Confidence 3 348999999999999999995
No 131
>PLN02352 phospholipase D epsilon
Probab=98.33 E-value=2.7e-06 Score=101.16 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 283 PVAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~----D~-~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
-.|.|.++|.+|+-+... +. ....||||++.++. ...|| .+.-||.|||+|.+++... ....+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-
Confidence 369999999999843221 11 11239999999987 67788 5666999999999999863 22469999988
Q ss_pred CCCCCceeEEEEEeCCcccCCCc-cceeeeccCCC----C-cEEEEEEEEEecCC
Q 004037 357 DHFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----I-GRLHLAITVLEESA 405 (777)
Q Consensus 357 D~~~Dd~IG~v~I~L~~L~~~~~-~~~W~~L~~~~----~-GeI~LsL~y~p~s~ 405 (777)
+..+||.+.+|..++..+.. .+.|+++.+.. . .+|+++++|.+...
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 47899999999999988865 89999997532 3 49999999988654
No 132
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=98.31 E-value=1.1e-06 Score=79.03 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=59.5
Q ss_pred HHHHHHhCc-ccchHHHHHHhhccchHHHHhh-cCCccccceeeeeeecCCCCCeEeeEEEEecCCCCCeEEEEEEEEEe
Q 004037 79 NHAIEKMWP-ICMEQIASQKLLLPIIPWFLEK-YKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156 (777)
Q Consensus 79 N~iL~~~Wp-~~~e~~~S~~I~~~~l~~~l~~-~kP~~i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vvLDldis~~ 156 (777)
|.++.|++- ++..+.+.+.+.+ .+...|++ .+|++++.+.+++|+||+.||.|+++++.. ...++++.+|+++.|.
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~-~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~-~~~~g~~~~~~dv~Y~ 78 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKE-KLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPD-LDPDGELWIEFDVSYS 78 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHH-HHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccc-cCCCCCEEEEEEEEEc
Confidence 667777544 4333344444443 33444554 469999999999999999999999999953 3456679999999997
Q ss_pred eCCCccceee
Q 004037 157 TADDMSAILA 166 (777)
Q Consensus 157 ~~~D~~i~l~ 166 (777)
| ++.+.+.
T Consensus 79 G--~~~l~l~ 86 (91)
T PF10296_consen 79 G--GFSLTLE 86 (91)
T ss_pred C--CeEEEEE
Confidence 6 4554443
No 133
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.25 E-value=5e-07 Score=85.41 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=73.9
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|+|.++|.+..+.+.+ .++|++..+. .......+++|.+.+++.||.|||.|.|..+..
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~ 77 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL---QGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEE---cCCeEeeeecCcceecCCCCeeeeeEEEECCHH
Confidence 567777777665544432 3445544441 111234567899999999999999999887665
Q ss_pred CCcCcccceeeeecCC--ceee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
........++..|.+. .++. |-. ++..|.+ ..+|-++..+|+.++++||+.
T Consensus 78 ~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~-~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEE-LEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred HhCCcEEEEEEEecCCCCCCceeEEEEECCCCCCcH-HHHHHHHHhCCCCceEEeeeC
Confidence 5444445677777763 3333 544 2233343 399999999999999999974
No 134
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-06 Score=100.74 Aligned_cols=117 Identities=23% Similarity=0.364 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccC-------------C-CCc
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTW-------------D-SPN 347 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~-------------e-~~~ 347 (777)
-+.++++.++.+.+.+ ++.+||||++.... +..+|++.++|.+|.|||.|+|.+... + ...
T Consensus 132 ~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 132 GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 3445556666666554 56699999999865 346999999999999999999988743 0 123
Q ss_pred EEEEEEee-cCCCC-CceeEEEEEeCCcccCCCccceeeeccCC----------CCcEEEEEEEEEec
Q 004037 348 VLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI----------KIGRLHLAITVLEE 403 (777)
Q Consensus 348 ~L~V~V~D-~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~----------~~GeI~LsL~y~p~ 403 (777)
.|++++|+ .+... ++|+|++.+++..+........||.|+.. ..|.+++.++|...
T Consensus 211 ~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 211 EIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred eEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 68899998 45544 99999999999988866677899999752 36889999998654
No 135
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.9e-06 Score=92.58 Aligned_cols=108 Identities=30% Similarity=0.496 Sum_probs=88.7
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
..+++|.....-|.|++++|..|..+|.+|.+||||..++.+ -+.+|++.++|++|.||++|.|.+.+.+ ....
T Consensus 223 ~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 223 LISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred eeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 467888889999999999999999999999999999999976 4678999999999999999999988644 3457
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceee
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI 384 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~ 384 (777)
+.|.|||++..+ .+++|-+...+- ..+..+..|+
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc--ccchhhcCcc
Confidence 999999999875 888887655433 3344444554
No 136
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.04 E-value=3.1e-06 Score=100.87 Aligned_cols=88 Identities=39% Similarity=0.507 Sum_probs=78.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k--~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
...++|.+++|.+|.+.|.+|.+|||+.+.+|.+. -++..+.+|+||+|++.|++...- .....|.+.|||+|.++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeecccc
Confidence 34668999999999999999999999999999865 577889999999999999887763 24578999999999997
Q ss_pred CceeEEEEEeCC
Q 004037 361 DDTLGDCTINIS 372 (777)
Q Consensus 361 Dd~IG~v~I~L~ 372 (777)
|+.||+..++|+
T Consensus 691 d~~iget~iDLE 702 (1105)
T KOG1326|consen 691 DEKIGETTIDLE 702 (1105)
T ss_pred cchhhceehhhh
Confidence 999999999987
No 137
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=4.7e-05 Score=87.10 Aligned_cols=104 Identities=27% Similarity=0.455 Sum_probs=87.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCcccceeeEecccCCC--CcEEEEEEe
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWDS--PNVLVIEVR 354 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-g~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e~--~~~L~V~V~ 354 (777)
...++|.|+.|.+|+-.. .|..-|||.+.+ || +++.|+...++-.|.|||+|.|.+.+... .-.|.|+|.
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 356888999999997543 577889999997 44 57889999999999999999999886433 337899999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|+.-.+ |..+|-+.++|.++........|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 988777 8899999999999998888899999964
No 138
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=97.74 E-value=2.2e-05 Score=74.53 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=54.6
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.|+|+|++.|.+..+.+.+ .++|++..+. .+..+..++||+++++++||+|||+|.|..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 77 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLL---PDKSRQSKRKTSIKRNTTNPVYNETLKYSIS 77 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEE---cCCccccceEeeeeeCCCCCcccceEEEECC
Confidence 4788888888776655443 3455555441 1223456789999999999999999999887
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 78 ~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 78 HSQLETRTLQLSVWHYDR 95 (125)
T ss_pred HHHhCCCEEEEEEEECCC
Confidence 766655556677777763
No 139
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=97.66 E-value=3.8e-05 Score=73.37 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=56.5
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.|+|.|+|.|.+....+.+ .++|++.++.+ +.....++||++++++.||+|||+|.|..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp---~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~ 77 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLP---DKSHNSKRKTAVKKGTVNPVFNETLKYVVE 77 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEe---CCcccceeecccccCCCCCccceEEEEEcC
Confidence 3777888887776555433 35566666521 222345789999999999999999999987
Q ss_pred CCCCcCcccceeeeecCCc
Q 004037 454 SEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~ 472 (777)
.++.......+.+.|.++.
T Consensus 78 ~~~l~~~~L~v~V~~~~~~ 96 (128)
T cd08392 78 ADLLSSRQLQVSVWHSRTL 96 (128)
T ss_pred HHHhCCcEEEEEEEeCCCC
Confidence 7777766777888887743
No 140
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=97.65 E-value=4.1e-05 Score=76.13 Aligned_cols=91 Identities=10% Similarity=0.042 Sum_probs=57.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCC--ceee-ceE-Ee----
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW-VH---- 480 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G--~ee~-gi~-v~---- 480 (777)
.++|++..+. .+..+..++||.+.+++.||+|||.|.|.. +.++.......+++.|.+. .++. |-. +.
T Consensus 48 ~DPYVkv~l~---~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 48 SDSFVKCYLL---PDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCEEEEEEE---cCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 4667766552 122344568999999999999999988864 3344444445577777653 2333 432 22
Q ss_pred -----------ccCcccccccccccCCCCccccee
Q 004037 481 -----------QPGSEVAQTWEPRKGKNRRLDTLV 504 (777)
Q Consensus 481 -----------~pg~~v~~~w~~~~~~~r~~~~~~ 504 (777)
.-|.+. .||..+..+|++++.-.
T Consensus 125 ~~~~~~~~w~~~~~~~~-~~w~~~~~~p~~~~~~~ 158 (162)
T cd04020 125 KSYGQAVDWMDSTGEEI-LLWQKMLDNPNSWVEGT 158 (162)
T ss_pred ccCCCccccccCChHHH-HHHHHHHhCCCCeEEEE
Confidence 123443 88888888888776543
No 141
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=97.64 E-value=3.6e-05 Score=72.91 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=54.3
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
+|+|+++|.|.+....+.+ .++|++..+.+ +..+..++||.++++++||+|||+|.|..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p---~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~ 77 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLP---DKSNRGKRKTSVKKKTLNPVFNETLRYKVE 77 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEc---CCCccccccCccCcCCCCCccCceEEEECC
Confidence 5888888888776544332 35566655521 222345689999999999999999999877
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 78 ~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 78 REELPTRVLNLSVWHRDS 95 (125)
T ss_pred HHHhCCCEEEEEEEeCCC
Confidence 666655556677777763
No 142
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=97.61 E-value=4.1e-05 Score=72.89 Aligned_cols=77 Identities=6% Similarity=-0.057 Sum_probs=56.4
Q ss_pred EEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCcccc-ccccceeccCCCCcccccccccccCCC
Q 004037 393 RLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKED-QSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 393 eI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~v-kkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
+|+++|.|.+..+.+.+ .++|++.+|.+ +..++ .++||++++++.||+|||+|.|..+.+
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp---~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~ 78 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLP---CSSSTSCLFRTKALEDQDKPVFNEVFRVPISST 78 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEcc---CCCCCCceEEcCccCCCCCCccccEEEEECCHH
Confidence 45666666555444332 47788877732 23232 478999999999999999999999999
Q ss_pred CCcCcccceeeeecCCc
Q 004037 456 KSPKVADNFEPINIEGQ 472 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G~ 472 (777)
+.......+.+.+.++.
T Consensus 79 ~L~~~~L~~~V~~~~~~ 95 (124)
T cd08680 79 KLYQKTLQVDVCSVGPD 95 (124)
T ss_pred HhhcCEEEEEEEeCCCC
Confidence 99888888999887643
No 143
>PLN02964 phosphatidylserine decarboxylase
Probab=97.50 E-value=9.8e-05 Score=87.46 Aligned_cols=90 Identities=21% Similarity=0.391 Sum_probs=75.7
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEE-EEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVK-GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~-v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
.-.|.+.+++++|+ ++ ..|||.. +++|.+.+||.+.++|+||+||+...|.+... .....+|.|||++.++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCCCC
Confidence 44689999999987 33 3588765 66788999999999999999999999999864 3456799999999998
Q ss_pred -CceeEEEEEeCCcccCCCc
Q 004037 361 -DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~ 379 (777)
++++|.|+++|.++...+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHHhhhheeecHhhccHHHH
Confidence 9999999999988776554
No 144
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=97.48 E-value=4.1e-05 Score=90.57 Aligned_cols=172 Identities=14% Similarity=0.196 Sum_probs=110.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
..|.+++.+++|.+|.. ....||+..+.. .+.+|+++.+|-.|.||++|++++. ..+.+++.+++++
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~---~sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI---ESQSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh---hccccchhhhccc
Confidence 45899999999999963 457899987743 5789999999999999999998876 3567888888876
Q ss_pred CC-----------CCceeEEEEEeCCcccCCCccceeeecc-CCCCcEEEEEEEEEecCCCccccCCCcCCcccccCCCc
Q 004037 358 HF-----------VDDTLGDCTINISDLRDGQRHDMWIPLQ-NIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGN 425 (777)
Q Consensus 358 ~~-----------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~-~~~~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~ 425 (777)
.- .+..+|..++.|.-.... ...|+.-- ....-.+...+.+.+...... ..+++ + ..|+
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n~~~ve~~v~~ssss~Ss~-~~~~~-~-----qTgI 899 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMNGIVVETSVKFSSSSTSSK-RKPSV-K-----QTGI 899 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCccccc--cccCccChhhhcCcceeeeEEecccccccc-CCCcc-e-----ecee
Confidence 42 155667777666533221 22354321 122334444444444332222 11121 1 2355
Q ss_pred cc----cccccceeccCCCCcccccccccccCCCCCcCcccceeeee-cCCceeeceE-EeccCccc
Q 004037 426 KE----DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPIN-IEGQQETGIW-VHQPGSEV 486 (777)
Q Consensus 426 ~~----vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id-~~G~ee~gi~-v~~pg~~v 486 (777)
++ +++.-.+.+....-|+. |..|+|.++ .+|.+|.||| +++.+|.+
T Consensus 900 FG~~~~~kisv~t~~n~s~lP~V---------------VyrCvEyle~~RgieEeGIyRlSGsaT~I 951 (1112)
T KOG4269|consen 900 FGLPLNVKISVVTKRNVSGLPYV---------------VYRCVEYLESCRGIEEEGIYRLSGSATDI 951 (1112)
T ss_pred ccccceeeEeeeeeecccCCchH---------------HHHHHHHHHhccccchhceEEecccHHHH
Confidence 54 33322222222333444 788999998 8999999999 99999998
No 145
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=97.43 E-value=0.00034 Score=68.60 Aligned_cols=57 Identities=14% Similarity=-0.037 Sum_probs=41.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeee-ecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~i-d~~G~ 472 (777)
.+||++.+| ..+..++.++||+++++++||+|||+|.|..+ .......+++. |.++.
T Consensus 51 sDPYVKv~L---lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~ 108 (146)
T cd04028 51 PAPYVKVYL---LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRM 108 (146)
T ss_pred cCCeEEEEE---ECCCccccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCC
Confidence 578888887 23445567899999999999999999999886 33334456666 45433
No 146
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=97.42 E-value=0.00014 Score=68.68 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=44.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++..+.. ...+..++||.+.++++||+|||+|.|.. +.+........+++.|.+..
T Consensus 33 ~DpyVkv~l~~---~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 33 PDPYVKTYLLP---DPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred CCCEEEEEEee---CCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 46777776622 22344678999999999999999999887 55556666667888888754
No 147
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.00018 Score=78.76 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=93.8
Q ss_pred cccCCceeEecccccCCCCCCcceeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecC
Q 004037 253 TLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRK 326 (777)
Q Consensus 253 ~LV~Pn~~~Idl~k~~s~~~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~-----~k~kTkVi~~ 326 (777)
.+..|++-.+++.- ....|.|.|.|++|++|..+.. ...++|||+|++.. -+.+|+...+
T Consensus 251 ~la~P~mg~iq~~~--------------~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k 316 (405)
T KOG2060|consen 251 TLAAPNMGDIQIAL--------------MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK 316 (405)
T ss_pred hhcCcccccchhhh--------------hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc
Confidence 46677766666542 2357899999999999987653 33789999999965 4679999999
Q ss_pred CCCCcccceeeEecccCCCCcEEEEEEee-cCCCC-CceeEEEEEeCCcccCCC-ccceeeeccC
Q 004037 327 TLSPKWHEEFNIPISTWDSPNVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQN 388 (777)
Q Consensus 327 TlnP~WnEtF~f~V~~~e~~~~L~V~V~D-~D~~~-Dd~IG~v~I~L~~L~~~~-~~~~W~~L~~ 388 (777)
|++|.+.+...|.-.. ....|.+.||- +.+.- +.|||.+++-|.++.... ....||.|.+
T Consensus 317 T~~plyqq~l~f~~sp--~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 317 TLDPLYQQQLSFDQSP--PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cCchhhhhhhhhccCC--CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 9999998888876554 45789999994 44444 779999999999998876 5678999875
No 148
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.19 E-value=0.00037 Score=66.01 Aligned_cols=75 Identities=21% Similarity=0.131 Sum_probs=52.0
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~ 453 (777)
.|+|++++.|.+...++.+ .++|++..+. .. +-.++||+++++ +||+|||+|.|. .+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll----p~-~~~~~kTkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL----PS-KKQRAKTKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc----cC-CcceeecccccC-CCCcccCEEEECCCC
Confidence 5888888888887776554 2334443331 11 225678989888 999999999997 66
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+.+.|.+.
T Consensus 76 ~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 76 PEELNNMALRFRLYGVER 93 (124)
T ss_pred HHHhccCEEEEEEEECCC
Confidence 666666666677777763
No 149
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=97.19 E-value=0.00036 Score=65.53 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.++|.|.+....+.+ .++|++..+.. +.....++||.+++++.||+|||+|.+..+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~ 78 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLP---DKSKSTRRKTSVKKDNLNPVFDETFEFPVSL 78 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEc---CCCCCceEecccccCCCCCEECeEEEEecCH
Confidence 4677777777665544332 35565555411 1223567899999999999999999998766
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.........+...|.+.
T Consensus 79 ~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 79 EELKRRTLDVAVKNSKS 95 (127)
T ss_pred HHhcCCEEEEEEEECCc
Confidence 65554455566666653
No 150
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=97.15 E-value=0.00039 Score=65.20 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=49.4
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.+++.|.+....+.+ .+||++..+. + .+-+++||.+.+++.||+|||.|.+..+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~----~-~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLL----P-DKKKKFETKVHRKTLNPVFNETFTFKVPY 76 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEE----c-CCCCceecccCcCCCCCceeeeEEEeCCH
Confidence 5777777777665554432 3455554441 1 11235789999999999999999988765
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......+++.|.+.
T Consensus 77 ~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 77 SELGNKTLVFSVYDFDR 93 (124)
T ss_pred HHhCCCEEEEEEEeCCC
Confidence 54444445577777653
No 151
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.13 E-value=0.00052 Score=65.53 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=74.2
Q ss_pred EEEEEEEecCCCCCC---------C----CCCCCcEEEEEeC--C--eEEEeeeecCCCCCcccceeeEecccC------
Q 004037 287 ARVEVVEASDMKPSD---------L----NGLADPYVKGQLG--P--YRFRTKTQRKTLSPKWHEEFNIPISTW------ 343 (777)
Q Consensus 287 L~VtVieAk~L~~~D---------~----~G~sDPYV~v~Lg--~--~k~kTkVi~~TlnP~WnEtF~f~V~~~------ 343 (777)
|.|.|++|.||++.. + .-.-++||++.+. + +..+|+++.++..|.|+.+++|.++-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467889999997532 1 1124899999963 2 688999999999999999999987610
Q ss_pred --------CCCcEEEEEEeecCCC-----------CCceeEEEEEeCCcccCCC-ccceeeec
Q 004037 344 --------DSPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDGQ-RHDMWIPL 386 (777)
Q Consensus 344 --------e~~~~L~V~V~D~D~~-----------~Dd~IG~v~I~L~~L~~~~-~~~~W~~L 386 (777)
-....+.|+||+.+.. +|-.||.+.||+.+|.... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0234689999986542 2558899999999986543 46789875
No 152
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=97.11 E-value=0.00046 Score=64.81 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=50.9
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|++++.|.+..+.+.+ .+||++..+. ..+..++||++++++.||+|||.|.|..+.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~-----~~~~~~~kT~v~~~t~~P~wne~f~f~v~~ 76 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLL-----PDRSNTKQSKIHKKTLNPEFDESFVFEVPP 76 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEe-----cCCCCcEeCceEcCCCCCCcccEEEEeCCH
Confidence 5777777777665544332 3556555441 111235789999999999999999998776
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......+++.|.+.
T Consensus 77 ~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 77 QELPKRTLEVLLYDFDQ 93 (124)
T ss_pred HHhCCCEEEEEEEECCC
Confidence 66555555677777764
No 153
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.10 E-value=0.00014 Score=87.34 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=92.3
Q ss_pred ceeeeecC-ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEe---cccC-----CC
Q 004037 275 WFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP---ISTW-----DS 345 (777)
Q Consensus 275 ~fsL~y~~-~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~---V~~~-----e~ 345 (777)
.|+..+.. ....+++.|.+|+.|.+.|..+.+|||+.+....+...|.++.+|+||.|+++..|. +... ..
T Consensus 195 ~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ 274 (1105)
T KOG1326|consen 195 EFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKN 274 (1105)
T ss_pred ceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcC
Confidence 45555544 345688999999999999999999999999999999999999999999999998774 2210 13
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC--CCcEEEEEE
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAI 398 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL 398 (777)
...+.|+|||.|+.+ ++++|++.....-+.. .....|+++-.. -.|++.++.
T Consensus 275 ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 275 PPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIAA 329 (1105)
T ss_pred CCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHHH
Confidence 457899999999987 9999998665443222 445678887543 245544443
No 154
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=97.08 E-value=0.00041 Score=66.12 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccc-cc
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFS-SV 452 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~-~~ 452 (777)
.|+|.+++.|......+.+ .++|++..+- ..+-+++||.++++++||+|||+|.| ..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~-----~~~~~~~kT~v~~~t~nP~wnE~F~f~~~ 76 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL-----PEKEHKVKTRVLRKTRNPVYDETFTFYGI 76 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe-----CCcCceeeccEEcCCCCCceeeEEEEccc
Confidence 6788888887766554432 2455554441 11224568999999999999999888 34
Q ss_pred CCCCCcCcccceeeeecC
Q 004037 453 SSEKSPKVADNFEPINIE 470 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~ 470 (777)
+..+.......+++.|.+
T Consensus 77 ~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 77 PYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CHHHhCCCEEEEEEEEcC
Confidence 545544445567777765
No 155
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.97 E-value=0.0005 Score=64.80 Aligned_cols=59 Identities=12% Similarity=-0.108 Sum_probs=42.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++.+|.+ +..+..++||++.++++||+|||+|.|..+.+..... ..+.+.|.++.
T Consensus 32 ~dpYVkv~l~p---~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~-l~v~V~~~~~~ 90 (119)
T cd08685 32 CNSYVKISLSP---DKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKR-LLVTVWNKLSK 90 (119)
T ss_pred CCeeEEEEEEe---CCCCcceEeCccccCCCCCccccEEEEEcChHHhCCE-EEEEEECCCCC
Confidence 57888877732 2233456799999999999999999998866555443 34777776643
No 156
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.95 E-value=0.0014 Score=58.75 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=69.1
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEE--eC-CeEEEeeeecCCCCCcccceeeEecccCCC-CcEEEEEEeecCCCCCc
Q 004037 288 RVEVVEASDMKPSDLNG-LADPYVKGQ--LG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 288 ~VtVieAk~L~~~D~~G-~sDPYV~v~--Lg-~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~~L~V~V~D~D~~~Dd 362 (777)
-|+++.|++|.-....| .+--|++-- +. +..+||.+.+...||.|+|+|.|.+.-+.. .-.|.|.||. ..-+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 37889999986443222 233466633 33 367899999999999999999999875432 3478999998 334588
Q ss_pred eeEEEEEeCCcccCCCccceeee
Q 004037 363 TLGDCTINISDLRDGQRHDMWIP 385 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~ 385 (777)
.||.|.+.|+++-.++ ...|.+
T Consensus 81 ~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHHH-hhhhhc
Confidence 9999999999776543 456654
No 157
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.94 E-value=0.001 Score=62.17 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=49.2
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|+++|.|.+....+.+ .+||++..+.. +.....++||++.+++.||+|||.|.|.. +
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 78 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLP---DRSEKSKRRTKTVKKTLNPEWNQTFEYSNVR 78 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEcc---CCCccccccccccCCCCCCccccEEEEcccC
Confidence 3667777776665444332 35566555421 11123567899999999999999988875 3
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 79 ~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 79 RETLKERTLEVTVWDYDR 96 (125)
T ss_pred HHHhCCCEEEEEEEeCCC
Confidence 344444455677777764
No 158
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=96.90 E-value=0.00076 Score=62.90 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=32.5
Q ss_pred cccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 428 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 428 vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..++||.+++++.||+|||.|.|..+..+.......++..|.+.
T Consensus 51 ~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 51 QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 35688999999999999999988776555444445566666653
No 159
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.47 E-value=0.0025 Score=70.67 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=91.9
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcccceeeEecccCC----------CCc
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SPN 347 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e----------~~~ 347 (777)
....|.+.|+++.+++......-.|-|+++..- .++.+|.++++|.+|.|+|.|.+.+.... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445678888888887654322234678887752 27889999999999999999999887521 123
Q ss_pred EEEEEEeecCCCC--CceeEEEEEeCCcccCCCccceeeeccCC---CCcEEEEEEEEEe
Q 004037 348 VLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNI---KIGRLHLAITVLE 402 (777)
Q Consensus 348 ~L~V~V~D~D~~~--Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~---~~GeI~LsL~y~p 402 (777)
.+.|++|.+..|- |.++|.+.+.|.-|.........++|.+. -.|+|.+.+.+..
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence 6899999998873 99999999999988876666778888763 3788888887653
No 160
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.44 E-value=0.0035 Score=58.76 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=45.8
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|++++.|.+....+.+ .+||+...+. .....+.+|+++++++||+|||.|.+.. +
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~ 76 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL-----PDKKHKLETKVKRKNLNPHWNETFLFEGFP 76 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC-----CCCCcceeeeeecCCCCCccceeEEEcccC
Confidence 5777777777655433322 3455544431 1112357899999999999999988864 3
Q ss_pred CCCCcCcccceeeeecC
Q 004037 454 SEKSPKVADNFEPINIE 470 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~ 470 (777)
.+........+++.|.+
T Consensus 77 ~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 77 YEKLQQRVLYLQVLDYD 93 (125)
T ss_pred HHHhCCCEEEEEEEeCC
Confidence 33333333456677665
No 161
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.38 E-value=0.002 Score=60.11 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=32.0
Q ss_pred cccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 430 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 430 kkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+++++++||+|||.|.|..+..........++..|.++
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 478999999999999999988876655544445566677654
No 162
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.32 E-value=0.017 Score=66.79 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=83.1
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC----C-CceeEEEEEeCCcccCCCccceeeecc---C
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQ---N 388 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~----~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~---~ 388 (777)
...+|.++++.+||.|-+.|.+... ++..|.|++.++|.+.. . ++|+|++...|..+........-+.|+ +
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 3458999999999999999988766 34678999999998765 2 799999999999887654332223333 2
Q ss_pred CCCcEEEEEEEEEecCC----------CccccCCCcCCc----ccccCCCccccccccceeccCCCCcccccc
Q 004037 389 IKIGRLHLAITVLEESA----------KQGVDSPCDGGT----LNKEGMGNKEDQSNKEDIRESFANETTDKG 447 (777)
Q Consensus 389 ~~~GeI~LsL~y~p~s~----------~lsv~d~~~k~~----L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~ 447 (777)
...|.|.+.+.-..... .+...+.+.+.. ..+..-.....-.++|.+.++++||.|-..
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~ 192 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF 192 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc
Confidence 35677777665322111 011111111100 000111233455789999999999999663
No 163
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.21 E-value=0.0047 Score=66.44 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=83.0
Q ss_pred ecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 280 VKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 280 y~~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
...-.|.|.+++..++||.-... +-+-+-||.+..+. .+.+|.+.....--.|.|+|+..+.+ ...|.+-||.|
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvySW 122 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYSW 122 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEeec
Confidence 34567999999999999975432 45678899999876 57788887777777999999998874 35799999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
+... +.+.-...+.+..+... .-+.-+.|.-..+|++-+++.+.+
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rq-spd~~~Al~lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQ-SPDRVVALYLEPRGQPPLRLPLAD 168 (442)
T ss_pred Cchhhccccccchhhhhhhhhc-CCcceeeeecccCCCCceecccCC
Confidence 8864 66543334444444332 223334444446888888776543
No 164
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=96.17 E-value=0.0054 Score=58.61 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=48.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.+++.|.+....+.+ .++|++.++..... .....++||++.++++||+|||.|.+....
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHL-FPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCc-CccccccccccCcCCCCCccCCEEEEEech
Confidence 5777777777664443322 35565555421100 012457899999999999999999888754
Q ss_pred CC--CcCcccceeeeecC
Q 004037 455 EK--SPKVADNFEPINIE 470 (777)
Q Consensus 455 ~~--~~kv~~~~e~id~~ 470 (777)
.. .......+++.|.+
T Consensus 81 ~~~~~~~~~l~~~V~d~d 98 (133)
T cd04009 81 EQCSVEGALLLFTVKDYD 98 (133)
T ss_pred hhcccCCCEEEEEEEecC
Confidence 32 23334456676765
No 165
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.12 E-value=0.0029 Score=60.02 Aligned_cols=69 Identities=6% Similarity=-0.086 Sum_probs=45.3
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC-CCcCcccceeeeecC--Cceee-ceE
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIE--GQQET-GIW 478 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~-~~~kv~~~~e~id~~--G~ee~-gi~ 478 (777)
..+||++.++... ....+.+++||.++++++||+|||+|.|..+.+ ..+.....+.+.|.+ +.++. |-.
T Consensus 19 ~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~ 91 (120)
T cd08395 19 MFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVT 91 (120)
T ss_pred CCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEE
Confidence 3689998887311 112333457899999999999999999998765 334444556666664 33444 443
No 166
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=96.09 E-value=0.0071 Score=59.98 Aligned_cols=78 Identities=12% Similarity=-0.024 Sum_probs=52.4
Q ss_pred CcEEEEEEEEE---ecCCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC------CCcCcc
Q 004037 391 IGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE------KSPKVA 461 (777)
Q Consensus 391 ~GeI~LsL~y~---p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~------~~~kv~ 461 (777)
.|+|.+...-- +..-.....++|++..+..+ ..+..+.||+++++|+||+|||+|.|..+.. ..+...
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p---~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYP---NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecC---CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 45555555432 22222223688998877333 3355679999999999999999999988554 244555
Q ss_pred cceeeeecCC
Q 004037 462 DNFEPINIEG 471 (777)
Q Consensus 462 ~~~e~id~~G 471 (777)
..+++.|.++
T Consensus 80 L~~~V~d~~~ 89 (155)
T cd08690 80 LKFEVYHKGG 89 (155)
T ss_pred EEEEEEeCCC
Confidence 6788888875
No 167
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.69 E-value=0.025 Score=65.46 Aligned_cols=86 Identities=27% Similarity=0.473 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCcccceeeEecc---cCCCCcEEEEEEeecCCCC
Q 004037 290 EVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIS---TWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 290 tVieAk~L~~~D~~G~sDPYV~v~Lg--~----~k~kTkVi~~TlnP~WnEtF~f~V~---~~e~~~~L~V~V~D~D~~~ 360 (777)
-.++|++|..+|..+++|||..++-- . ..++|.++++|++|.|-+ |.+... ..+....+.+.|||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34568999999999999999987742 2 468999999999999987 443332 2234567899999999987
Q ss_pred -CceeEEEEEeCCcccC
Q 004037 361 -DDTLGDCTINISDLRD 376 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~ 376 (777)
+++||++..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 7999999999998864
No 168
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.53 E-value=0.013 Score=54.98 Aligned_cols=77 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSS 454 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~s 454 (777)
|+|+++|.|.+....+.+ .++|++..+. .+.....+.+|.+.+++.||+|||.|.|. .+.
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~ 78 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLL---PGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEe---cCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence 667777777665444332 3444444431 12223456899999999999999998774 333
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......++..|.+.
T Consensus 79 ~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 79 EDIQRKTLRLLVLDEDR 95 (123)
T ss_pred HHhCCCEEEEEEEEcCC
Confidence 33333334566666653
No 169
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.52 E-value=0.0096 Score=66.58 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=44.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCCceee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET 475 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G~ee~ 475 (777)
++||++.+|-+ ..+...|+||.+.+.++||+|||+|.|.. |++...++. +|+.|.|....+
T Consensus 201 SDPYvk~kliP---D~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls--iEvWDWDrTsRN 262 (683)
T KOG0696|consen 201 SDPYVKLKLIP---DPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS--IEVWDWDRTSRN 262 (683)
T ss_pred CCcceeEEecc---CCcchhhhhhhhhhhhcCccccceeEEecccccccceeE--EEEecccccccc
Confidence 68888887733 33445568888899999999999999988 455555554 777777765544
No 170
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.31 E-value=0.18 Score=50.11 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=86.2
Q ss_pred CceeEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCcccceeeEecccCC------------C
Q 004037 282 EPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------S 345 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~--v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e------------~ 345 (777)
+..-.|+++|..++-+...-. .+..+.-.. +.+++|+|+|+.+..+.+|.|+|.|.|++.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 455688999998875432111 134444444 445789999999999999999999999988532 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCcc--ceeeeccC------CCCcEEEEEEEEEecC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEES 404 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~--~~W~~L~~------~~~GeI~LsL~y~p~s 404 (777)
.+.+++.|.-.|..+ ..++|...++...+...... ..-+.|.+ ...|-|.+++.++|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 346888888777765 57889998888877655443 33344433 2478899999888754
No 171
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.49 E-value=0.32 Score=54.19 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=90.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC------CCCcEEEEEEeecCCC-
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW------DSPNVLVIEVRDKDHF- 359 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~------e~~~~L~V~V~D~D~~- 359 (777)
+.|+|++|++++... .-.-.+...++++...|-.+..+-.|.||.....++... .+...|+++||-.|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998652 345678888999999999999999999999888776521 1345799999999843
Q ss_pred C-CceeEEEEEeCCcc---cCC--CccceeeeccCC------CCcEEEEEEEEEecCC
Q 004037 360 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEESA 405 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L---~~~--~~~~~W~~L~~~------~~GeI~LsL~y~p~s~ 405 (777)
+ .+.+|.+.++|... ..+ .....|++|.+. .+-+|.+.+.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 3 88999999999988 444 356789999764 2568888888776553
No 172
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.34 E-value=0.075 Score=64.00 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=67.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeec-CCCCCcccce-eeEecccCCCCcEEEEEEe
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~-~TlnP~WnEt-F~f~V~~~e~~~~L~V~V~ 354 (777)
.+.+.|+|+++.-|..++ ...||.|.+-+ ..++|+++. +.+||+|+|+ |.|.---...-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 367899999999987654 34899999832 467888865 5899999975 6665221112347999999
Q ss_pred ecCCCCCceeEEEEEeCCcccCCCc
Q 004037 355 DKDHFVDDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 355 D~D~~~Dd~IG~v~I~L~~L~~~~~ 379 (777)
+.+ ..+||+-.+|++.|..|..
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred ccC---CceeeeeccchhcccCcce
Confidence 965 5799999999999988764
No 173
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=94.02 E-value=0.029 Score=55.17 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=39.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC-------------CCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS-------------SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~-------------s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+.. +..+..++||.++++++||+|||+|.|... .++.+.....+++.|.++
T Consensus 19 sDPYV~V~l~~---~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~ 90 (148)
T cd04010 19 CDPYASVTLIY---SNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASM 90 (148)
T ss_pred CCceEEEEEeC---CcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCC
Confidence 57888777632 122335678999999999999999999873 223333444566666654
No 174
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.92 E-value=0.33 Score=48.39 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCeE----EEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeec
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPYR----FRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~k----~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~ 356 (777)
..++|+|+++.++... ..+|-||.+.+ |.+. ..|+.+.. .++.|||...|++. .......|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3678999999998754 34688988866 4432 23443333 67999999888765 333445899999997
Q ss_pred CCCC-----CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 357 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~-----Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
...+ ...+|.+.++|-+... .| .+|...|.+...+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~~~ 123 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWPVP 123 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEcCC
Confidence 6421 2468999998876332 22 3788888887543
No 175
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.78 E-value=0.33 Score=49.03 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=68.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeec
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~ 356 (777)
..++|+|+.+.+|... ....+-||.+.| |.+ ...|+.+.-+..+.|||.+.|++. .......|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3688999999999862 234667887655 553 335655554567999999888765 333445899999986
Q ss_pred CCCC-----------------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 357 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 357 D~~~-----------------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
.... +..||.+.++|-+... .| .+|...|.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW~ 135 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMWT 135 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEecC
Confidence 5321 3577888887765332 12 36888777763
No 176
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=93.56 E-value=0.089 Score=48.56 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=38.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCC-cCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~-~kv~~~~e~id~~G 471 (777)
..+||++..+.. .+ ..+.||++.++++||+|||.|.+.....+. ......+++.|.+.
T Consensus 22 ~~Dpyv~v~~~~--~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 22 SSDPYVTASFAK--FG---KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CCCccEEEEEcc--CC---CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 357888776621 11 235789999999999999998887654432 22334577777763
No 177
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=92.77 E-value=0.12 Score=50.23 Aligned_cols=39 Identities=13% Similarity=-0.077 Sum_probs=29.6
Q ss_pred ccccceeccCCCCccc-ccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~-Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++||.++++++||+| ||.|.+.....+ ...+++.|.++
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~v~~~~----~L~v~V~D~~~ 84 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFVGLPTD----VLEIEVKDKFA 84 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEEcCCCC----EEEEEEEecCC
Confidence 4689999999999999 999888775332 34566777654
No 178
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=92.49 E-value=0.27 Score=46.49 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=28.7
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++||.+.+++.||.|||+|.+........ ....++..|.+.
T Consensus 50 ~~~rT~v~~~~~~P~wne~f~~~~~~~~~~-~~l~v~v~d~~~ 91 (131)
T cd04026 50 TKQKTKTIKKTLNPVWNETFTFDLKPADKD-RRLSIEVWDWDR 91 (131)
T ss_pred ceecceeecCCCCCCccceEEEeCCchhcC-CEEEEEEEECCC
Confidence 457899999999999999988876433222 223455666653
No 179
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.28 E-value=0.72 Score=45.37 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=67.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D 357 (777)
.++|++....++...+ ....+-||.+.+ |.+ ...|+......++.|||...|.+. .......|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5677888887776411 234567777765 442 234444444468999999888755 3334458999999976
Q ss_pred CCC---CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEE
Q 004037 358 HFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (777)
Q Consensus 358 ~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (777)
..+ +..||.+.++|-+... .| .+|...|.+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~--------~L---~~G~~~l~lW 121 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG--------KL---RQGMITLNLW 121 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC--------cE---ecCCEEEecc
Confidence 543 5799999999886432 12 2677777776
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.16 E-value=0.27 Score=47.47 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=55.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC-------------CCcCcccceeeeecCCc--ee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-------------KSPKVADNFEPINIEGQ--QE 474 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~-------------~~~kv~~~~e~id~~G~--ee 474 (777)
.+||+...+... .+..+++|.+.+++.||.|||.|.+..... ........++..|.+.. ++
T Consensus 19 ~dPyv~v~~~~~----~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 19 CDPFARVTLNYS----SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred CCcEEEEEEecC----CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 466766555211 123457898989999999999988876443 22444556777776643 33
Q ss_pred e-ceEEeccCcccccccccccCCCCcccceeeecCCCccccCCCCCCCCC
Q 004037 475 T-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL 523 (777)
Q Consensus 475 ~-gi~v~~pg~~v~~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (777)
. |.. ..+-.++. .+.+..+|+.......---+++..|||
T Consensus 95 ~IG~~-~i~l~~l~---------~~~~~~~W~~L~~~~~~~~~~~~~~~~ 134 (137)
T cd08675 95 FLGEV-RIPLQGLQ---------QAGSHQAWYFLQPREAPGTRSSNDGSL 134 (137)
T ss_pred EEEEE-EEehhhcc---------CCCcccceEecCCcCCCCCCccccCCC
Confidence 2 322 22333321 334557777666442222333444444
No 181
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=91.83 E-value=0.27 Score=47.47 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=35.2
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||++..+ + ..+.||.+.+++.||.|||.|.|........ ...+++.|.+
T Consensus 35 ~~DPYv~v~~-----~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~--~l~i~V~D~d 86 (136)
T cd08375 35 KSDPYCEVSM-----G---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD--VLCITVFDRD 86 (136)
T ss_pred CcCcEEEEEE-----C---CEeeeccccCCCCCCccCceEEEEecCccCC--EEEEEEEECC
Confidence 3578877655 2 2357899999999999999988866432222 2346666665
No 182
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=91.43 E-value=0.17 Score=48.13 Aligned_cols=41 Identities=2% Similarity=-0.170 Sum_probs=30.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.+||++..+... .....+.||++.++|+||+|||.|.+..+
T Consensus 15 sDPYV~l~v~~~---~~~~~~~KTk~i~~TlnPvWnE~F~i~l~ 55 (118)
T cd08686 15 ANLYCTLEVDSF---GYFVKKAKTRVCRDTTEPNWNEEFEIELE 55 (118)
T ss_pred CCCEEEEEEcCc---cccceeeeeeeecCCCCCccceEEEEEeC
Confidence 578887655211 11135689999999999999999988775
No 183
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=91.06 E-value=0.33 Score=46.44 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=50.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC--C---CCCc--CcccceeeeecCCc--eee-ceEE
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS--S---EKSP--KVADNFEPINIEGQ--QET-GIWV 479 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~--s---~~~~--kv~~~~e~id~~G~--ee~-gi~v 479 (777)
.++|++..+. ..++||++.++++||+|||.|.+... . +... .....+++.|.+.. ++. |-..
T Consensus 22 ~dpyv~v~~~--------~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~ 93 (135)
T cd04017 22 SDPFARVSFL--------NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSV 93 (135)
T ss_pred CCCEEEEEEC--------CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEE
Confidence 5777766551 23578999999999999999877531 1 1111 11234677777643 333 4332
Q ss_pred eccCcccccccccccCCCCcccceeeecC
Q 004037 480 HQPGSEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 480 ~~pg~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
-.|...+...| ++.+..+|+..-
T Consensus 94 i~~~~~~~~~~------~~~~~~~W~~L~ 116 (135)
T cd04017 94 AKPLVKLDLEE------DFPPKLQWFPIY 116 (135)
T ss_pred eeeeeecccCC------CCCCCceEEEee
Confidence 23433332222 677899999763
No 184
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=90.93 E-value=0.17 Score=47.72 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=37.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC---CCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS---EKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s---~~~~kv~~~~e~id~~G 471 (777)
.+||++..+ +. .++||.++++++||+|||.|.|..+. ++.......+++.|.+.
T Consensus 20 ~dpYv~v~l-----~~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 20 NDAYVIIQL-----GK---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CCceEEEEE-----CC---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 578887766 21 35789999999999999998887755 22333345577777663
No 185
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=90.81 E-value=0.15 Score=47.98 Aligned_cols=53 Identities=6% Similarity=-0.092 Sum_probs=37.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++.++. +.++.||.++++|+||+|||.|.+..+... -..++...|.+..
T Consensus 22 sDpYv~v~l~-------~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~~ 74 (121)
T cd08401 22 RDCYCTVNLD-------QEEVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDVL 74 (121)
T ss_pred cCcEEEEEEC-------CccEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCCC
Confidence 5788776661 113478999999999999999999886432 2445666776643
No 186
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=90.72 E-value=4.5 Score=38.73 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=78.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeee-cCCCCCcccceeeEeccc---CC----CCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQ-RKTLSPKWHEEFNIPIST---WD----SPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~---k~kTkVi-~~TlnP~WnEtF~f~V~~---~e----~~~~L~V~ 352 (777)
.-.+.|+|++..+++. ...-.||+...+.. ..+|... ..+-.-.|||+|.+.+.- .. ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467889999998875 22345666655553 3455443 234556999999887541 11 23578999
Q ss_pred EeecCCCCC-ceeEEEEEeCCcccCC--CccceeeeccCC--CCcEEEEEEEEEecCC
Q 004037 353 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEESA 405 (777)
Q Consensus 353 V~D~D~~~D-d~IG~v~I~L~~L~~~--~~~~~W~~L~~~--~~GeI~LsL~y~p~s~ 405 (777)
|+.....+. ..+|.+.++|+++... .....-++|... ....|++.+.+.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 998754443 5999999999998874 344566777653 3567888888776543
No 187
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.49 E-value=0.31 Score=44.41 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=37.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+..++ +. .++||++.+++.||+|||.|.|.......+. ..++..|.+.
T Consensus 21 ~dpyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~--l~v~v~d~~~ 72 (105)
T cd04050 21 PSPYVELTV-----GK---TTQKSKVKERTNNPVWEEGFTFLVRNPENQE--LEIEVKDDKT 72 (105)
T ss_pred CCcEEEEEE-----CC---EEEeCccccCCCCCcccceEEEEeCCCCCCE--EEEEEEECCC
Confidence 577777666 22 4578999999999999999888875544333 3577777766
No 188
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.22 E-value=1 Score=44.99 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEeccc--CCCCcEEEEEEeecCCCC-CceeEEEEEeCCcc
Q 004037 304 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374 (777)
Q Consensus 304 G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~~--~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L 374 (777)
..+|-||++.+ +.+ ...|..+.-+..+.|||...|++.- ......|.|.|||.+..+ ...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677777765 332 2355555545678999998888763 334458999999987654 67899999998864
Q ss_pred cCCCccceeeeccCCCCcEEEEEEEEEecC
Q 004037 375 RDGQRHDMWIPLQNIKIGRLHLAITVLEES 404 (777)
Q Consensus 375 ~~~~~~~~W~~L~~~~~GeI~LsL~y~p~s 404 (777)
.. .| .+|...+.+.....+
T Consensus 108 ~g--------~L---r~G~~~l~lw~~~~~ 126 (159)
T cd08397 108 DG--------TL---RRGRQKLRVWPDVEA 126 (159)
T ss_pred CC--------cE---ecCCEEEEEEeCCCC
Confidence 22 22 368888888754443
No 189
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.96 E-value=0.22 Score=49.15 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=49.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceE------Ee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW------VH 480 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~------v~ 480 (777)
.+||++..+ +.. +.||.+.++++||+|||.|.+........ -...++..|.+. .++. |-. +.
T Consensus 35 ~DPYV~V~~-----~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~ 105 (151)
T cd04018 35 VDPYVEVSF-----AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKIS 105 (151)
T ss_pred cCcEEEEEE-----CCE---eeecceEcCCCCCCcceEEEEEeeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhc
Confidence 578887665 222 35788999999999999998875322221 133477777764 4443 433 22
Q ss_pred ccCcc-----cccccccccCCCCc
Q 004037 481 QPGSE-----VAQTWEPRKGKNRR 499 (777)
Q Consensus 481 ~pg~~-----v~~~w~~~~~~~r~ 499 (777)
..+.+ ..-+|-...+.||.
T Consensus 106 ~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 106 NSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred cCCccccCCccCceEEEeecCccc
Confidence 22322 23577777777775
No 190
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=89.50 E-value=0.27 Score=45.19 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=38.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc--CCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~--~s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+. . .++||.+++++.||+|||.|.|.. +..+.......+++.|.+.
T Consensus 21 ~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 21 IDPVVKVEVG-----G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCCEEEEEEC-----C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 5788877662 2 347899999999999999988865 3333334455677888764
No 191
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.44 E-value=1.4 Score=44.35 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeec--C--CCCCcccceeeEecc--cCCCCcEEEEE
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQR--K--TLSPKWHEEFNIPIS--TWDSPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~--~--TlnP~WnEtF~f~V~--~~e~~~~L~V~ 352 (777)
..+.|+|.++.+++........|-|+.+.+ |.+ ...|+... + ...+.|||...|.+. .......|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999987654446788888866 543 23444321 1 235779999888765 33334589999
Q ss_pred EeecCCCC----------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 353 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~~----------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
+|+....+ +..||.+.++|-+... .| .+|...|.+....
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW~~~ 136 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLWPPS 136 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEeccCC
Confidence 99865432 4688999888875332 12 3688888877543
No 192
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.35 E-value=3.5 Score=42.01 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=61.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~---k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D~ 358 (777)
.++|+|+.+..+ ..+.....--||++.| |.+ ..+|....-+.+|.|||...|.+. +......|.|.||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 567777777633 3222222335666544 442 225666556678999999888766 33344589999999632
Q ss_pred CC-----------------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 359 FV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 359 ~~-----------------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
.+ +-.||-+.+.|-+... .| .+|+..|.+.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~~ 139 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQIS 139 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecCC
Confidence 11 2345555555543221 12 3788888887654
No 193
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=89.16 E-value=0.34 Score=45.05 Aligned_cols=56 Identities=7% Similarity=-0.073 Sum_probs=37.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. .....++||.+.+++.||+|||.|.|........ ...++..|.+..
T Consensus 21 ~Dpyv~v~~~-----~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~--~l~v~v~d~d~~ 76 (119)
T cd04036 21 PDCYVELWLP-----TASDEKKRTKTIKNSINPVWNETFEFRIQSQVKN--VLELTVMDEDYV 76 (119)
T ss_pred CCcEEEEEEc-----CCCCccCccceecCCCCCccceEEEEEeCcccCC--EEEEEEEECCCC
Confidence 5677766551 1112457899999999999999988877554322 245777776653
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=89.06 E-value=0.27 Score=45.89 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=37.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+..... .....++||.+.++++||+|||+|.+....+....+. ++..|.+
T Consensus 21 ~DPyv~v~~~~~~~-~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~--~~V~d~d 78 (120)
T cd04048 21 SDPFVVVYVKTGGS-GQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLR--FEVYDVD 78 (120)
T ss_pred CCcEEEEEEEcCCC-CceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEE--EEEEEec
Confidence 57777766632210 1234568999999999999999988865444444333 5555554
No 195
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.94 E-value=3.1 Score=37.94 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCcccee
Q 004037 305 LADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMW 383 (777)
Q Consensus 305 ~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W 383 (777)
.++-.+.+.+++ ...+|.-... .+..|++.|.|.+.. .+.|.|.||-+|. ..+.|-.-+.|.+.. +..-
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~~----~~~~ 77 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDER----HEVQ 77 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhhc----ccce
Confidence 367788899987 5666765433 578999999999874 6789999998765 344566667777632 2233
Q ss_pred eeccCCCCcEEEEEEEE
Q 004037 384 IPLQNIKIGRLHLAITV 400 (777)
Q Consensus 384 ~~L~~~~~GeI~LsL~y 400 (777)
.+|. ++|.+...++|
T Consensus 78 ~~le--pqg~l~~ev~f 92 (98)
T cd08687 78 LDME--PQLCLVAELTF 92 (98)
T ss_pred eccc--cccEEEEEEEe
Confidence 4444 47888888877
No 196
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=88.84 E-value=0.68 Score=45.51 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=48.1
Q ss_pred ccCCCcCCcccccCCCccccccccceeccC-CCCcccccccccccCCCCCcCcccceeeeecCCc--eeeceEEeccCcc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QETGIWVHQPGSE 485 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~-t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~--ee~gi~v~~pg~~ 485 (777)
..+||++..+ +. .+.||++.++ ++||+|||.|.|........ ..++++.|.++. ++.-..+..|-.+
T Consensus 20 ~sDPYV~v~l-----~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~--~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 20 VPEVFVKAQL-----GN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFED--HLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCeEEEEEE-----CC---EEeeeEeccCCCCCCcccCcEEEEecCccCC--eEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 3678887766 22 3456766655 69999999988876422222 234566666643 3331223344444
Q ss_pred cccccccccCCCCcccceeeecC
Q 004037 486 VAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 486 v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
+... ..++.+..+|++.-
T Consensus 90 l~~~-----~~~~~~~~~W~~L~ 107 (150)
T cd04019 90 IERR-----VDDRPVPSRWFSLE 107 (150)
T ss_pred Cccc-----CCCCccCCceEECc
Confidence 4221 23445677787665
No 197
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=88.51 E-value=0.56 Score=43.37 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=34.1
Q ss_pred cCCCcCCcccccCCCcccccccccee-ccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDI-RESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~v-kk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. . .++||++ +++++||.|||.|.|..+....+. ..+++.|.+..
T Consensus 22 ~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~--l~i~v~d~~~~ 75 (118)
T cd08681 22 QDPYCVLRIG-----G---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPI--LKVAVFDDDKR 75 (118)
T ss_pred CCceEEEEEC-----C---CccccccccCCCCCCccCceEEEEecCCCCCE--EEEEEEeCCCC
Confidence 5777776552 1 3456665 456899999999988876543333 34666676543
No 198
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=88.42 E-value=0.56 Score=45.00 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=34.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~ 470 (777)
.++|++..+ +.. ++||.+.++++||+|||.|.+.. ..... ....+++.|.+
T Consensus 48 ~DPYVkV~~-----~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~--~~L~v~V~D~d 99 (127)
T cd04032 48 TDGYVKVFF-----GGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG--GKLRFEVWDRD 99 (127)
T ss_pred CCeEEEEEE-----CCc---cccCceecCCCCCcCCCEEEEecccCCCC--CEEEEEEEeCC
Confidence 577877655 221 68999999999999999987753 22222 23457777766
No 199
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=88.33 E-value=0.66 Score=44.07 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=40.6
Q ss_pred cEEEEEEEEEecCCC--ccccCCCcCCcccccCCCccccccccceecc-CCCCcccccccccccCCCCCcCcccceeeee
Q 004037 392 GRLHLAITVLEESAK--QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEPIN 468 (777)
Q Consensus 392 GeI~LsL~y~p~s~~--lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk-~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id 468 (777)
|.|++.+.-...... +...+||+...+ |. .+.||.+.+ ++.||.|||.|.+...... .. ..+++.|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~l-----g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~-~~--l~~~V~d 70 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRV-----GH---AVYETPTAYNGAKNPRWNKTIQCTLPEGV-DS--IYIEIFD 70 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEE-----CC---EEEEeEEccCCCCCCccCeEEEEEecCCC-cE--EEEEEEe
Confidence 556655542222111 234688887666 22 234677754 4899999999998875432 22 4477766
Q ss_pred cC
Q 004037 469 IE 470 (777)
Q Consensus 469 ~~ 470 (777)
.+
T Consensus 71 ~d 72 (121)
T cd04016 71 ER 72 (121)
T ss_pred CC
Confidence 65
No 200
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=88.26 E-value=0.84 Score=43.22 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=31.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+. . .+..||+++ +++||.|||.|.|...+.....+ .+...|.+
T Consensus 22 ~DPYv~v~l~-----~--~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l--~v~v~d~~ 72 (126)
T cd08400 22 PHPYCVISLN-----E--VKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF--TISLSNKA 72 (126)
T ss_pred CCeeEEEEEC-----C--EeEEEeecC-CCCCCccCCEEEEecCCCCcCEE--EEEEEECC
Confidence 5788877662 1 233577775 57999999999887544333322 34555554
No 201
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=88.02 E-value=0.38 Score=47.66 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--CceeeceE-Ee---ccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-VH---QPG 483 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~gi~-v~---~pg 483 (777)
.+||+..++ +.. ++.||++.+++.||.|||.|.+..... ...+ .+...|.+ |.+..|.. +. ...
T Consensus 58 sDPYv~V~l-----~~~--~~~rT~v~~~~~nP~WnE~F~~~~~~~-~~~l--~~~V~d~d~~~~~~IG~~~i~l~~l~~ 127 (158)
T cd04015 58 SDPYATVDL-----AGA--RVARTRVIENSENPVWNESFHIYCAHY-ASHV--EFTVKDNDVVGAQLIGRAYIPVEDLLS 127 (158)
T ss_pred cCeEEEEEE-----CCe--EeeEEEEeCCCCCCccceEEEEEccCC-CCEE--EEEEEeCCCcCCcEEEEEEEEhHHccC
Confidence 588887776 222 236888888999999999988765322 2233 35555544 44434543 11 011
Q ss_pred cccccccccccCCCCc
Q 004037 484 SEVAQTWEPRKGKNRR 499 (777)
Q Consensus 484 ~~v~~~w~~~~~~~r~ 499 (777)
.+...+|-+....+++
T Consensus 128 g~~~~~w~~L~~~~~~ 143 (158)
T cd04015 128 GEPVEGWLPILDSNGK 143 (158)
T ss_pred CCCcceEEECcCCCCC
Confidence 2223566666554433
No 202
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=87.99 E-value=0.28 Score=45.16 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=39.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccc-ccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~-Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+..++ +. .++||++.++++||+| ||.|.+..+......-...+++.|.+.
T Consensus 21 ~Dpyv~v~~-----~~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 21 TDAFVEVKF-----GS---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CCceEEEEE-----CC---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 577877666 22 5688999999999999 999888876655443445677777763
No 203
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.52 E-value=0.64 Score=43.87 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=46.6
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceE-EeccCc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQPGS 484 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~-v~~pg~ 484 (777)
..+||++..+ +..+ .++||++.++++||+|||.|.+........ ...+++.|.+. .++. |-. +.-..-
T Consensus 20 ~~DPYv~v~~-----~~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~--~L~~~V~d~d~~~~dd~iG~~~i~l~~~ 91 (124)
T cd04037 20 KSDPYLKIKL-----GKKK-INDRDNYIPNTLNPVFGKMFELEATLPGNS--ILKISVMDYDLLGSDDLIGETVIDLEDR 91 (124)
T ss_pred CCCcEEEEEE-----CCee-ccceeeEEECCCCCccceEEEEEecCCCCC--EEEEEEEECCCCCCCceeEEEEEeeccc
Confidence 3677877666 2222 235666677899999999988865332222 23466677663 3333 433 222222
Q ss_pred ccccccccccCCCCcc
Q 004037 485 EVAQTWEPRKGKNRRL 500 (777)
Q Consensus 485 ~v~~~w~~~~~~~r~~ 500 (777)
...+||..+...+..+
T Consensus 92 ~~~~~~~~~~~~~~~~ 107 (124)
T cd04037 92 FFSKHRATCGLPPTYE 107 (124)
T ss_pred ccchHHHhccCCCccc
Confidence 2246666655555433
No 204
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=87.00 E-value=0.4 Score=44.38 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=36.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .+.||++.++++||+|||.|.|....... .....+++.|.+.
T Consensus 26 ~DPYv~v~~-----~~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d~ 78 (108)
T cd04039 26 MDPFVIISF-----GR---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLDKDK 78 (108)
T ss_pred cCceEEEEE-----CC---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEECCC
Confidence 477776655 21 34689999999999999998886643332 2334577777763
No 205
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=86.68 E-value=0.5 Score=44.53 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=36.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC-CCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS-EKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s-~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .++||++++++.||+|||.|.|.... .........+++.|.+.
T Consensus 21 ~dpyv~v~~-----~~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 21 SSAYVELDF-----DG---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred cCcEEEEEE-----CC---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 577776655 21 34789999999999999998887753 23333445566766653
No 206
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=86.48 E-value=0.24 Score=44.75 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=52.0
Q ss_pred ccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCceeeceEE----eccCccccccccc
Q 004037 431 NKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWV----HQPGSEVAQTWEP 492 (777)
Q Consensus 431 kKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ee~gi~v----~~pg~~v~~~w~~ 492 (777)
.||++|+...||.|+|+|.|...-.+.+.|...+.........+.-.|+ ...|++...||.+
T Consensus 37 ~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 37 FKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCCHHHhhhhhc
Confidence 7899999999999999999999999999999988888866667774553 3567777899975
No 207
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=86.24 E-value=0.62 Score=42.75 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=36.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. . .+..+|.++++ .||.|||.|.|..+..+.......+...|.++.
T Consensus 18 ~dpyv~v~~~-----~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 18 RDPYCTVSLD-----Q--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred CCceEEEEEC-----C--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 5777776662 1 13367888888 999999999988866554444444555555443
No 208
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=85.58 E-value=0.83 Score=44.77 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=35.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||+...+ +. .++||++.+++.||.|||.|.|..+.. .....+++.|.+
T Consensus 21 ~sDPYV~v~~-----g~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 21 SSDPYVVLTL-----GN---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred CcCcEEEEEE-----CC---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 3577776555 22 358899999999999999988876433 223457777766
No 209
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=85.51 E-value=1.1 Score=42.21 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=36.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++.++. . .+.||.+.+++.||.|||.|.|..... ......++..|.+.
T Consensus 17 ~Dpyv~v~l~-----~---~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~ 68 (121)
T cd08378 17 NDPVVEVKLG-----N---YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDK 68 (121)
T ss_pred CCCEEEEEEC-----C---ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCC
Confidence 6788877762 1 357899999999999999988875322 22333466666654
No 210
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=85.31 E-value=0.76 Score=43.21 Aligned_cols=54 Identities=11% Similarity=0.000 Sum_probs=36.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .+++|.+.+++.||+|||.|.+.............++..|.+.
T Consensus 15 ~Dpyv~v~~-----~~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 15 GDRIAKVTF-----RG---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred CCCEEEEEE-----CC---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 577776655 11 2478999999999999999888764332233334566666654
No 211
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=85.12 E-value=1.3 Score=42.05 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=33.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+ +.. +..||.+++++.||.|||.|.+.... .. ...++..|.+
T Consensus 35 ~dpyv~v~~-----~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~--~~--~l~~~v~d~~ 84 (132)
T cd04014 35 LDPYVSIDV-----DDT--HIGKTSTKPKTNSPVWNEEFTTEVHN--GR--NLELTVFHDA 84 (132)
T ss_pred cCcEEEEEE-----CCE--EEeEEeEcCCCCCCCcceeEEEEcCC--CC--EEEEEEEeCC
Confidence 577877666 222 23578888899999999998887752 12 2345555554
No 212
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=85.04 E-value=0.52 Score=45.12 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=35.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..+||+...+ |. .+.||++.++++||+|||.|.|....... ...+++.|.+.
T Consensus 23 ~sDPYv~i~~-----g~---~~~rTk~~~~~~nP~WnE~f~f~v~~~~~---~l~v~V~d~d~ 74 (126)
T cd08379 23 STDAYCVAKY-----GP---KWVRTRTVEDSSNPRWNEQYTWPVYDPCT---VLTVGVFDNSQ 74 (126)
T ss_pred CCCeeEEEEE-----CC---EEeEcCcccCCCCCcceeEEEEEecCCCC---EEEEEEEECCC
Confidence 3678877655 32 34688888999999999998887643221 34567777654
No 213
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=84.93 E-value=3.3 Score=49.27 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=109.3
Q ss_pred ccceeeeeeecCCCCCeEeeEEEEecCCC-----------------------CCeEEEEEEEEEeeCCCccceeeehhhh
Q 004037 115 AKKALVQHLYLGRNPPMLTEMRVLRQSND-----------------------DDHMVLELGMNFLTADDMSAILAVKLRK 171 (777)
Q Consensus 115 i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~-----------------------~d~vvLDldis~~~~~D~~i~l~v~l~~ 171 (777)
+..+.+.++-||.+-|.+++.+++.-+.. -.-+.+=++++|.|..--+ +.+.+
T Consensus 146 L~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTts--id~~s-- 221 (1051)
T KOG3532|consen 146 LQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTS--IDVST-- 221 (1051)
T ss_pred hcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCccee--cCCcc--
Confidence 55677999999999999999999841110 0123344556665421111 11111
Q ss_pred ccCcceeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceeEEEEeecccCCCccccCcchHHHHHHHHHHHhh
Q 004037 172 RLGFGMWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFE 251 (777)
Q Consensus 172 rlG~G~~~~v~V~~l~~~G~lRV~l~L~~~~P~vg~v~vsFle~P~idf~lkpl~~~G~dV~~iPGLs~~I~~~I~~~l~ 251 (777)
-++.| ..+.|+-.+++|.+|+.+...+ .- .-+++|++.|.+...++.-+ .++=| .--|...|...+..++.
T Consensus 222 ~~~kk--~S~~iKl~~l~Gm~r~~~~r~p-y~---hw~~sf~G~P~~e~di~s~~--qg~qL-Q~~I~q~i~~~ir~~~~ 292 (1051)
T KOG3532|consen 222 IIAKK--ASLSVKITKLTGMVRVILSRQP-YH---HWTFSFVGQPIFETDINSQI--QGHQL-QRLIPQIIKEAIRRSLQ 292 (1051)
T ss_pred ccccC--CceeEEEEEeccceeEEEEecc-ce---eeeeeeccCchhhhhhHHHH--HHHHH-HHHhHHHHHHHHHHHHH
Confidence 11111 2455666899999999874333 22 23789999998777765321 11100 11244456667777777
Q ss_pred hcccCCceeEecccccCC-C--CC-CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC
Q 004037 252 QTLVEPNMLVVDVDKFAS-P--QP-GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP 316 (777)
Q Consensus 252 ~~LV~Pn~~~Idl~k~~s-~--~~-~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~ 316 (777)
....|||+. +.+..++- + .+ +.--++..-.+.|.+.|++.++..|.. .++...-||.+.+.+
T Consensus 293 rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 293 RKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred hhccCcchh-hhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 788999864 23332221 1 11 100112223467999999999988854 467888999999865
No 214
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=84.27 E-value=0.71 Score=43.47 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=37.3
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
..+||+..++. . ...++||+++++++||+|||.|.+..... ... ..++..|.+..
T Consensus 17 ~~dpyv~v~~~-----~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~--l~~~v~d~~~~ 71 (126)
T cd08678 17 SSNPYCVLEMD-----E-PPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKE--LLFEVYDNGKK 71 (126)
T ss_pred CcCCEEEEEEC-----C-CCcEEEeEEEecCCCCccCceEEEEeCCC-CCE--EEEEEEECCCC
Confidence 36777776652 1 12457999999999999999988877432 222 34677777654
No 215
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=83.21 E-value=1.7 Score=40.43 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=34.9
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..+||+...+ + -.+.+|.+.++++||.|||.|.+........ ...++..|.+.
T Consensus 23 ~~dPyv~v~~-----~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~--~l~i~v~d~~~ 75 (128)
T cd04024 23 KSDPYAILSV-----G---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQ--LLKLILWDKDR 75 (128)
T ss_pred CcCCeEEEEE-----C---CEEEecceecCCcCCccCCcEEEEecCCCCC--EEEEEEEECCC
Confidence 3577776554 2 1347888889999999999988776542222 33466666654
No 216
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=83.13 E-value=0.82 Score=42.10 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=35.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++.++ +. .+.||.+.++++||.|||.|.|........ ...++..|.+.
T Consensus 21 ~dPyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~--~l~v~v~d~~~ 72 (116)
T cd08376 21 SDPYVKFRL-----GN---EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ--ILEIEVWDKDT 72 (116)
T ss_pred CCcEEEEEE-----CC---EeEecccccCCCCCceeEEEEEEecCCCCC--EEEEEEEECCC
Confidence 577776655 11 347888999999999999988876544322 33466677664
No 217
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=83.11 E-value=1.6 Score=40.12 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=35.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+ +. .+.+|.+.+++.||.|||.|.+........ ...++..|.+..
T Consensus 28 ~dPyv~v~~-----~~---~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~--~l~i~v~d~~~~ 80 (121)
T cd08391 28 SDPYVIVRV-----GA---QTFKSKVIKENLNPKWNEVYEAVVDEVPGQ--ELEIELFDEDPD 80 (121)
T ss_pred cCCEEEEEE-----CC---EeEEccccCCCCCCcccceEEEEeCCCCCC--EEEEEEEecCCC
Confidence 567776655 11 457888999999999999987766433222 334666666543
No 218
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=82.95 E-value=1.1 Score=55.92 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=62.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|.|+++|.. +.+++ .++|++.+|.+ ...+..|+||.+.++|.||+|||...+++ |
T Consensus 1512 ggqV~LsIsY~~--~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP---dp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1512 GGQVKLSISYNN--GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP---DPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred CceEEEEEEEcC--ceEEEEhhhhcccccccCCCCCCcceeEEecC---CchHhhhhhhccccccCCCchhhheeecCCc
Confidence 679999999873 22221 46788888733 34566779999999999999999877775 4
Q ss_pred CCCCcCcccceeeeecCCceee-ceE-EeccCccc
Q 004037 454 SEKSPKVADNFEPINIEGQQET-GIW-VHQPGSEV 486 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~ee~-gi~-v~~pg~~v 486 (777)
-+..+.-..++.+....|..|+ -++ +..|-..+
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhc
Confidence 4445544456777777777777 233 44554444
No 219
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.87 E-value=4.1 Score=39.47 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=46.9
Q ss_pred EeeeecCC-CCCcccceeeEecc--cCCCCcEEEEEEeecCCCC-C----ceeEEEEEeCCcccCCCccceeeeccCCCC
Q 004037 320 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (777)
Q Consensus 320 kTkVi~~T-lnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D~~~-D----d~IG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (777)
.|+...-+ .++.|||...|.+. +......|.|.||..+... . ..||.+.++|-+... .| .+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence 56655555 79999998888754 4445568999999987765 3 699999999886532 12 26
Q ss_pred cEEEEEEE
Q 004037 392 GRLHLAIT 399 (777)
Q Consensus 392 GeI~LsL~ 399 (777)
|...|.+.
T Consensus 92 G~~~L~lW 99 (142)
T PF00792_consen 92 GPQKLSLW 99 (142)
T ss_dssp EEEEEE-E
T ss_pred CCEEEEEE
Confidence 88777774
No 220
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.06 E-value=7.3 Score=35.63 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=45.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecC
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D 357 (777)
+.+.+....+.........++-||.+.+ |++ ...|+.+.-...+.|||...|++. .......|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654432223578888866 443 234555444556899999888765 3334458999999854
No 221
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.43 E-value=1.6 Score=41.11 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||++..+.... ......+++|.+.++++||.|||.|.+...... . ...++..|.+
T Consensus 20 ~~Dpyv~v~~~~~~-~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~--~l~~~v~d~~ 77 (133)
T cd04033 20 ASDPYVKISLYDPD-GNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE-H--RLLFEVFDEN 77 (133)
T ss_pred CcCcEEEEEEECCC-CCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC-C--EEEEEEEECC
Confidence 35788776663211 112334578999999999999999888765432 2 2356667765
No 222
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=80.07 E-value=1.7 Score=40.62 Aligned_cols=54 Identities=11% Similarity=-0.128 Sum_probs=34.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.++|+...+ +.....+.||.+.++++||.|||.|.+........ ...+++.|.+
T Consensus 22 ~Dpyv~v~~-----~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~--~L~i~v~d~d 75 (126)
T cd04043 22 SDPYVTLVD-----TNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPL--WISATVWDRS 75 (126)
T ss_pred CCceEEEEE-----CCCCeeeecccEecCCCCCcccceEEEEcCCCCCC--EEEEEEEECC
Confidence 456665443 11112357888888999999999988877554222 2345666655
No 223
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=78.36 E-value=2.7 Score=38.89 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=34.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+...+. .. ..+++|.+.+++.||.|||.|.+... .... ...++..|.+.
T Consensus 24 ~dpyv~v~~~-----~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~--~l~~~v~d~~~ 76 (124)
T cd04044 24 VDPYVTFSIS-----NR-RELARTKVKKDTSNPVWNETKYILVN-SLTE--PLNLTVYDFND 76 (124)
T ss_pred CCCeEEEEEC-----CC-CcceEeeeecCCCCCcceEEEEEEeC-CCCC--EEEEEEEecCC
Confidence 4666665552 10 35588999999999999999877665 2222 23466666654
No 224
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=77.77 E-value=2.2 Score=39.84 Aligned_cols=51 Identities=6% Similarity=-0.076 Sum_probs=34.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+ +. .+.+|.+.++++||.|||.|.+........ ...++..|.+
T Consensus 21 ~DPyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~--~l~~~v~d~~ 71 (123)
T cd04025 21 SDPFVRVFY-----NG---QTLETSVVKKSCYPRWNEVFEFELMEGADS--PLSVEVWDWD 71 (123)
T ss_pred cCceEEEEE-----CC---EEEeceeecCCCCCccCcEEEEEcCCCCCC--EEEEEEEECC
Confidence 577776554 21 246888889999999999988877554322 2345566655
No 225
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=77.65 E-value=2.7 Score=39.46 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=33.4
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||+...+. ...+++|.+.+++.||.|||.|.+...... + ...++..|.+
T Consensus 21 ~~DPYv~v~~~-------~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~-~--~L~v~v~d~~ 72 (120)
T cd04045 21 KIDPYVRVLVN-------GIVKGRTVTISNTLNPVWDEVLYVPVTSPN-Q--KITLEVMDYE 72 (120)
T ss_pred CcCCEEEEEEC-------CEEeeceeEECCCcCCccCceEEEEecCCC-C--EEEEEEEECC
Confidence 35677766551 124578888899999999999877543321 2 3346666655
No 226
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.52 E-value=7 Score=39.55 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=42.6
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCCC----CceeEEEEEeCCcccCCCccceeeeccCCCC
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV----DDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~~----Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (777)
..+.|.|...+.+|.|+|+|.+.++... ....|.|++|+..... ...+|.+.+||-+ .+.. + ..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~~------i---~d 127 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGTI------I---QD 127 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS-B-----------S
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCeE------e---cC
Confidence 4578888888899999999999988532 3458999999876542 2689999999986 2221 1 25
Q ss_pred cEEEEEEEEEe
Q 004037 392 GRLHLAITVLE 402 (777)
Q Consensus 392 GeI~LsL~y~p 402 (777)
|+..|-+....
T Consensus 128 g~~~L~v~~~~ 138 (184)
T PF14429_consen 128 GEHELPVYKYD 138 (184)
T ss_dssp EEEEEEEEE--
T ss_pred CCEEEEEEEcc
Confidence 66666665444
No 227
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=75.28 E-value=3.6 Score=38.39 Aligned_cols=53 Identities=9% Similarity=-0.092 Sum_probs=32.2
Q ss_pred cCCCcCCcccccCCCccccccccceecc-CCCCcccccccccccCCCCC-cCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKS-PKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk-~t~nP~~Ne~~~~~~~s~~~-~kv~~~~e~id~~ 470 (777)
.++|+...+. . ..++|++.+ ++.||.|||.|.|....... ......+++.|.+
T Consensus 22 ~dpyv~v~~~-----~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 22 IDPYVIIQCR-----T---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred cCceEEEEEC-----C---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 5667665541 1 235666655 58999999998887755432 1222346666665
No 228
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=75.03 E-value=2.1 Score=39.86 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=34.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+ +. ..+.||.+.++++||+|||.|.+..... . -...++..|.+..
T Consensus 21 ~Dpyv~v~~-----~~--~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~--~~l~~~v~D~d~~ 73 (121)
T cd04042 21 SDPYVKFKY-----GG--KTVYKSKTIYKNLNPVWDEKFTLPIEDV-T--QPLYIKVFDYDRG 73 (121)
T ss_pred CCCeEEEEE-----CC--EEEEEeeeccCCCCCccceeEEEEecCC-C--CeEEEEEEeCCCC
Confidence 567776554 21 1347888888999999999988765321 1 2345777776643
No 229
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=74.91 E-value=2.7 Score=39.33 Aligned_cols=51 Identities=8% Similarity=-0.092 Sum_probs=33.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||+...+ +.. .+.||.+.++++||.|||.|.+...... ....++..|.+
T Consensus 21 ~DPYv~v~~-----~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~~---~~l~v~v~d~~ 71 (121)
T cd04054 21 SDPYCIVKV-----DNE--VIIRTATVWKTLNPFWGEEYTVHLPPGF---HTVSFYVLDED 71 (121)
T ss_pred CCceEEEEE-----CCE--eeeeeeeEcCCCCCcccceEEEeeCCCC---CEEEEEEEECC
Confidence 577776655 221 2368888889999999999888764321 23345556655
No 230
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=74.63 E-value=2.2 Score=39.37 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=33.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +.. ...+|.+++++.||.|||.|.+.+.... .-...++..|.+.
T Consensus 13 ~dPYv~v~v-----~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~~ 65 (111)
T cd04052 13 LSPYAELYL-----NGK--LVYTTRVKKKTNNPSWNASTEFLVTDRR--KSRVTVVVKDDRD 65 (111)
T ss_pred CCceEEEEE-----CCE--EEEEEeeeccCCCCccCCceEEEecCcC--CCEEEEEEEECCC
Confidence 577776665 221 2367888888999999999877654322 2223455666554
No 231
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=73.41 E-value=8.2 Score=37.28 Aligned_cols=48 Identities=6% Similarity=-0.127 Sum_probs=31.1
Q ss_pred CCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 411 SPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 411 d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
+||+..++ |. .+.+|.+.++ .||.|||.|.|.......+ ..+++.|.+
T Consensus 21 dPYV~Ik~-----g~---~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~---L~v~V~dkd 68 (127)
T cd08394 21 NTYVTLKV-----QN---VKSTTIAVRG-SQPCWEQDFMFEINRLDLG---LVIELWNKG 68 (127)
T ss_pred CCeEEEEE-----CC---EEeEeeECCC-CCCceeeEEEEEEcCCCCE---EEEEEEeCC
Confidence 56776555 32 3467777666 5999999998876432222 457777765
No 232
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=72.97 E-value=2.5 Score=42.46 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=37.2
Q ss_pred cccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCceee
Q 004037 408 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET 475 (777)
Q Consensus 408 sv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ee~ 475 (777)
..+|||+-..+ |. .+-||++.++.+||+|||.+.|..+ +.... ..+++.|.|.-..-
T Consensus 25 ~sSDPyVVl~l-----g~---q~lkT~~v~~n~NPeWNe~ltf~v~-d~~~~--lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 25 GSSDPYVVLEL-----GN---QKLKTRVVYKNLNPEWNEELTFTVK-DPNTP--LKVTVYDKDTFSSD 81 (168)
T ss_pred cCCCCeEEEEE-----CC---eeeeeeeecCCCCCcccceEEEEec-CCCce--EEEEEEeCCCCCcc
Confidence 44789987655 33 3467778899999999999888763 22222 23566676644333
No 233
>PLN03008 Phospholipase D delta
Probab=72.69 E-value=4 Score=50.36 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=55.3
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--CceeeceE-Ee----c
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-VH----Q 481 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~gi~-v~----~ 481 (777)
.++||++..| +.. ++.||.++++++||+|||.|.+..... .. ...+.+.|.+ |.+..|.. +. .
T Consensus 76 tSDPYV~I~L-----g~~--rv~RTrVi~n~~NPvWNE~F~f~vah~-~s--~L~f~VkD~D~~gaD~IG~a~IPL~~L~ 145 (868)
T PLN03008 76 TSDPYVTVVV-----PQA--TLARTRVLKNSQEPLWDEKFNISIAHP-FA--YLEFQVKDDDVFGAQIIGTAKIPVRDIA 145 (868)
T ss_pred CCCceEEEEE-----CCc--ceeeEEeCCCCCCCCcceeEEEEecCC-Cc--eEEEEEEcCCccCCceeEEEEEEHHHcC
Confidence 3689998877 222 345899999999999999998876432 22 3446666655 44333432 21 3
Q ss_pred cCcccccccccccCCCCcc---cceeeec
Q 004037 482 PGSEVAQTWEPRKGKNRRL---DTLVRRV 507 (777)
Q Consensus 482 pg~~v~~~w~~~~~~~r~~---~~~~~~~ 507 (777)
+|..+ ..|-+..+..++| ..++|-+
T Consensus 146 ~Ge~v-d~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 146 SGERI-SGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred CCCce-EEEEEccccCCCCCCCCcEEEEE
Confidence 45555 7888777655444 4567654
No 234
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=72.23 E-value=26 Score=36.33 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=41.5
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCC--CC---ceeEEEEEeCC
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF--VD---DTLGDCTINIS 372 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~--~D---d~IG~v~I~L~ 372 (777)
..++|-|...+.+|.|+|++.+.++... ....|.|+++..... +| ..+|-+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4688999888899999999999988532 345799999876532 12 46777777764
No 235
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=70.93 E-value=3.7 Score=37.37 Aligned_cols=60 Identities=5% Similarity=-0.098 Sum_probs=33.8
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCccccccccccc--CCCCCcCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~--~s~~~~kv~~~~e~id~~G 471 (777)
..+||+...+.. .......++||.+.++++||+||+ |.+.. ...........+++.|.+.
T Consensus 20 ~~DPyv~v~~~~--~~~~~~~~~kT~vi~~t~nP~Wn~-f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 20 KSDPFLEISRQS--EDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred CCCeeEEEEEEC--CCCCEEEEEeeeEeccCCCCceEE-EEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 367887665521 111234568999999999999994 43322 1111112233466766653
No 236
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=70.87 E-value=9.7 Score=37.56 Aligned_cols=38 Identities=8% Similarity=-0.239 Sum_probs=27.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.++|+..+|+. ...-+|+++.++.||.|||.|.|....
T Consensus 27 ~~~Y~~i~Ld~-------~~vaRT~v~~~~~nP~W~E~F~f~~~~ 64 (146)
T cd04013 27 KRYYCELCLDK-------TLYARTTSKLKTDTLFWGEHFEFSNLP 64 (146)
T ss_pred CCceEEEEECC-------EEEEEEEEEcCCCCCcceeeEEecCCC
Confidence 45666666632 233689999999999999999886543
No 237
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=70.81 E-value=6 Score=37.35 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=34.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+ +.. .++||.+.++++||.|||.|.+..... -...++..|.+..
T Consensus 22 ~dPyv~v~~-----~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~~----~~l~~~V~d~~~~ 73 (125)
T cd04021 22 PDPYVEVTV-----DGQ--PPKKTEVSKKTSNPKWNEHFTVLVTPQ----STLEFKVWSHHTL 73 (125)
T ss_pred CCeEEEEEE-----CCc--ccEEeeeeCCCCCCccccEEEEEeCCC----CEEEEEEEeCCCC
Confidence 567776555 211 357888889999999999988765321 2345666666543
No 238
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=70.51 E-value=17 Score=36.50 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCC-eEEEeeeecC--CCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccC
Q 004037 305 LADPYVKGQLGP-YRFRTKTQRK--TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD 376 (777)
Q Consensus 305 ~sDPYV~v~Lg~-~k~kTkVi~~--TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~ 376 (777)
...-|+++.+++ +..+|+...- ...=.|||.|.+.+.. -+..|.++||.....++..|+.+.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 345688998877 4566665433 3345678999999986 45789999999988779999999999875443
No 239
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=67.77 E-value=3.9 Score=38.39 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=34.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+. | ..++||++.++++||.|||.|.+.... .....++..|.+.
T Consensus 21 ~dpyv~v~~~----~---~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~ 71 (123)
T cd08382 21 PDPFAVITVD----G---GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKK 71 (123)
T ss_pred CCcEEEEEEC----C---ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCC
Confidence 5666655541 1 345789999999999999998887754 2234566666653
No 240
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=67.18 E-value=5.7 Score=53.56 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=45.0
Q ss_pred CcEEEEEEEEEec-CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccc--cccCCCCCcCcccceeee
Q 004037 391 IGRLHLAITVLEE-SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSF--SSVSSEKSPKVADNFEPI 467 (777)
Q Consensus 391 ~GeI~LsL~y~p~-s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~--~~~~s~~~~kv~~~~e~i 467 (777)
.|.|.+++.--.. .+.....+||+...+ | .-+++||++.+++.||.|||.|. ++.|+... ...+++.
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~-----g--~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~---~l~iev~ 2048 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTL-----G--NGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQ---KLHISCK 2048 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEE-----C--CCCcccccccCCCCCCCcccceeeeecCCCCCC---ceEEEEE
Confidence 6877777652211 133344688887665 2 13468999999999999999877 44454222 2347777
Q ss_pred ecC
Q 004037 468 NIE 470 (777)
Q Consensus 468 d~~ 470 (777)
|.+
T Consensus 2049 d~d 2051 (2102)
T PLN03200 2049 SKN 2051 (2102)
T ss_pred ecC
Confidence 764
No 241
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=66.97 E-value=97 Score=31.90 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=41.6
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCC------C----CceeEEEEEeCCc
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF------V----DDTLGDCTINISD 373 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~------~----Dd~IG~v~I~L~~ 373 (777)
..+.|.|...+.+|.|+|++.+.++... ....|.|+.|+.+.. . ...+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678889888899999999999988432 345799999986532 1 2456777777654
No 242
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=66.83 E-value=2.6 Score=40.93 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=29.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCC--cccccccccccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFAN--ETTDKGSFSSVS 453 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~n--P~~Ne~~~~~~~ 453 (777)
+++|++..|.. . +..+.+|.+..+++| |+||+.|.|..+
T Consensus 25 sD~yVK~~L~~----~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~ 65 (133)
T cd08374 25 SDIYVKGWLDG----L-EEDKQKTDVHYRSLDGEGNFNWRFVFPFD 65 (133)
T ss_pred cCeEEEEEEcc----C-cccccccceEEecCCCCcEEeEEEEEeee
Confidence 56777766621 1 456789999999999 999999887663
No 243
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=66.19 E-value=6.6 Score=36.62 Aligned_cols=70 Identities=9% Similarity=-0.080 Sum_probs=40.4
Q ss_pred cCCCcCCcccccCCCccccccccceec-cCCCCcccccccccccCCCCC--cCcccceeeeecCC--ceeeceEEeccCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKS--PKVADNFEPINIEG--QQETGIWVHQPGS 484 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vk-k~t~nP~~Ne~~~~~~~s~~~--~kv~~~~e~id~~G--~ee~gi~v~~pg~ 484 (777)
.++|+...+.. ..+++|.+. .++.||.|||.|.+....... ......+++.|.+. .+..-.+++.|-.
T Consensus 21 ~dpYv~v~~~~-------~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~ 93 (125)
T cd04051 21 MKVYAVVWIDP-------SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLK 93 (125)
T ss_pred CceEEEEEECC-------CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHH
Confidence 46676655521 234677765 468999999999988755531 22334567777653 3333223444444
Q ss_pred cc
Q 004037 485 EV 486 (777)
Q Consensus 485 ~v 486 (777)
++
T Consensus 94 ~l 95 (125)
T cd04051 94 DL 95 (125)
T ss_pred Hh
Confidence 44
No 244
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=65.90 E-value=14 Score=38.02 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=41.1
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCCC---CceeEEEEEeCC
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV---DDTLGDCTINIS 372 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~~---Dd~IG~v~I~L~ 372 (777)
..++|-|...+.+|.|+|++.+.++... ....|.|+++...... ...+|-+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4678999998999999999999988532 2347899888754332 246777777764
No 245
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=65.18 E-value=4.5 Score=38.16 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=32.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||+...+ +. .+.+|++.++++||.|||.|.+..... .. ...++..|.+
T Consensus 22 ~DPyv~v~~-----~~---~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~--~l~i~v~d~d 71 (127)
T cd04027 22 SDPYVTVQV-----GK---TKKRTKTIPQNLNPVWNEKFHFECHNS-SD--RIKVRVWDED 71 (127)
T ss_pred cCcEEEEEE-----CC---EeeecceecCCCCCccceEEEEEecCC-CC--EEEEEEEECC
Confidence 577776655 11 246888888999999999988755322 11 2446666665
No 246
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=64.29 E-value=22 Score=35.93 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=40.6
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCC-----C-CceeEEEEEeCCc
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF-----V-DDTLGDCTINISD 373 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~-----~-Dd~IG~v~I~L~~ 373 (777)
..++|-+..+ .+|.|+|+|.+.++... ....|.|++|+.+.. . ...+|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3455555555 89999999999987432 345899999986632 1 5678888888774
No 247
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=63.71 E-value=16 Score=45.16 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCcEEEEEeCC-eEEEeeeecCC-CCCcccceeeEecccCCCCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccce
Q 004037 306 ADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM 382 (777)
Q Consensus 306 sDPYV~v~Lg~-~k~kTkVi~~T-lnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~ 382 (777)
.++|+++.+.. ...+|....+. -+|.|.+.|++.... ....+++.+-+.+..+ ...+|.+.++...+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h--~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH--KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc--cccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 58999998866 55677777776 799999999887764 3467999999988888 8999999999999998888888
Q ss_pred eeeccCC------CCcEEEEEEEEEecCC
Q 004037 383 WIPLQNI------KIGRLHLAITVLEESA 405 (777)
Q Consensus 383 W~~L~~~------~~GeI~LsL~y~p~s~ 405 (777)
|+++... +.-.+.+++.|.+...
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeech
Confidence 9887542 1234556666666543
No 248
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=62.10 E-value=7.9 Score=35.56 Aligned_cols=51 Identities=10% Similarity=-0.126 Sum_probs=32.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+..++. . ...+|.+.+++.||.|||+|.+.... . .-...++..|.+.
T Consensus 22 ~dPyv~v~~~-----~---~~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~ 72 (119)
T cd08377 22 SDPFCVLELV-----N---ARLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK 72 (119)
T ss_pred CCcEEEEEEC-----C---EeeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC
Confidence 4677765551 1 13588888999999999998776532 1 1223455566553
No 249
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=62.03 E-value=5.2 Score=36.60 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=33.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.++|+...+. + ...++|.+.+++.||.|||.|.+..+... .....++..|.+
T Consensus 20 ~dpyv~v~~~----~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~~--~~~l~~~v~d~~ 71 (115)
T cd04040 20 SDPFVKFYLN----G---EKVFKTKTIKKTLNPVWNESFEVPVPSRV--RAVLKVEVYDWD 71 (115)
T ss_pred CCCeEEEEEC----C---CcceeeceecCCCCCcccccEEEEeccCC--CCEEEEEEEeCC
Confidence 4566655441 1 23478888899999999999887664332 222345666654
No 250
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=58.54 E-value=30 Score=35.36 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=41.9
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCCC-------CceeEEEEEeCC
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-------DDTLGDCTINIS 372 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~~-------Dd~IG~v~I~L~ 372 (777)
..+.|.|...+.+|.|+|++.+.++... ....|.|++|+.+... ...+|-+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 4678889888999999999999988432 3457999999855421 245777777766
No 251
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=58.50 E-value=5.2 Score=33.61 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=28.7
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
...+|.+++++.||.|||.|.+.........+ .++..|.+
T Consensus 34 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l--~~~V~~~~ 73 (85)
T PF00168_consen 34 TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSL--SFEVWDKD 73 (85)
T ss_dssp EEEEECCBSSBSSEEEEEEEEEEESHGCGTEE--EEEEEEET
T ss_pred eeeeeeeeeccccceeeeeeeeeeecccccce--EEEEEECC
Confidence 45889999999999999998887544444443 35555543
No 252
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=57.53 E-value=76 Score=35.60 Aligned_cols=112 Identities=14% Similarity=0.231 Sum_probs=75.4
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccc--ceeeEecccCCCCcEEEEEEeecCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWH--EEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~Wn--EtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
+...-.|.|.|.+-.++. -....|+.+..|...++|..+.-+..-.-+ +...+.+.- ...+|++.+|-...
T Consensus 54 nHRkF~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKkL 126 (508)
T PTZ00447 54 NYRTFYLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTKL 126 (508)
T ss_pred ccceeeEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEeccc
Confidence 344567888888877764 345689999999988888655433322222 333333432 34689999998887
Q ss_pred CCCceeEEEEEeCCc--ccCCCccceeeeccCC--CCcEEEEEEE
Q 004037 359 FVDDTLGDCTINISD--LRDGQRHDMWIPLQNI--KIGRLHLAIT 399 (777)
Q Consensus 359 ~~Dd~IG~v~I~L~~--L~~~~~~~~W~~L~~~--~~GeI~LsL~ 399 (777)
.+..-||.+.+.++. +...-+...||.+... ..++|.|++-
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 788899999999884 3333456789999643 3566666554
No 253
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=56.80 E-value=8.2 Score=38.27 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=28.3
Q ss_pred cccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 430 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 430 kkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
+++|.++++++||+|||.|.+..... ......+++.|.+
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d 128 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD 128 (153)
T ss_pred cEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC
Confidence 47899999999999999988876332 2233456677775
No 254
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=56.07 E-value=8 Score=36.43 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=25.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 452 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~ 452 (777)
.+||+...+ +. .+.||++.+++.||+|||.|.+..
T Consensus 24 ~dPyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~~ 58 (126)
T cd04046 24 ADPYVIIKC-----EG---ESVRSPVQKDTLSPEFDTQAIFYR 58 (126)
T ss_pred cCccEEEEE-----CC---EEEEeCccCCCCCCcccceEEEEe
Confidence 567765543 22 247899999999999999987754
No 255
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=51.78 E-value=13 Score=34.54 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=34.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCC-CCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESF-ANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t-~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.++|+...+... +..+..++||.+.+.+ .||.|||+|.|.....+.. ...++..|.++.
T Consensus 25 ~dpyv~v~l~~~--~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~--~l~~~V~d~~~~ 84 (128)
T cd00275 25 VDPYVEVEIHGL--PADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELA--FLRFVVYDEDSG 84 (128)
T ss_pred cCCEEEEEEEeC--CCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeE--EEEEEEEeCCCC
Confidence 456666555211 1103456788876655 5999999988876533322 234666676653
No 256
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.87 E-value=4.9 Score=48.26 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=60.7
Q ss_pred CCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-CceeEEEEEeCCcccC-CCccc
Q 004037 305 LADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHD 381 (777)
Q Consensus 305 ~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~-~~~~~ 381 (777)
..+||+.+.+.- +...+.+.+.+..|.|+++|.+.+.. ...+.|.||...... +.+.-.+.+..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~---~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA---GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec---CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 458999888865 34456667889999999999999774 457888998875433 3333333333333332 12345
Q ss_pred eeeeccCCCCcEEEEEEEEEe
Q 004037 382 MWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 382 ~W~~L~~~~~GeI~LsL~y~p 402 (777)
.|..++. .|.++..+.+.-
T Consensus 104 ~w~~~~~--~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAALTG 122 (694)
T ss_pred hcccccc--ccceeeeecccC
Confidence 6887653 677777666544
No 257
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=46.08 E-value=22 Score=30.25 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=28.0
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
...+|++..++.||.|||.|.+...... .....++..|.+.
T Consensus 35 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~ 75 (101)
T smart00239 35 EKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDR 75 (101)
T ss_pred ceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCC
Confidence 3477888788889999999888765443 3333466666553
No 258
>PLN02223 phosphoinositide phospholipase C
Probab=44.52 E-value=16 Score=43.25 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=35.2
Q ss_pred cCCCcCCcccccCCCcccc-ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKED-QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~v-kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.++|+.+.+. |.... .++||.++.+..||+|||.|.|.....++-.++ +++.|.|
T Consensus 435 ~DpyV~VeI~----Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLr--f~V~D~D 490 (537)
T PLN02223 435 PDLYVRISIA----GVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALIS--FEVYDYE 490 (537)
T ss_pred CCeEEEEEEe----eccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEE--EEEEecC
Confidence 4567776663 33221 235677888899999999988876544444444 5555555
No 259
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=42.98 E-value=2e+02 Score=33.29 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=40.4
Q ss_pred cEEEEEEeecCC-----C--CCceeEEEEEeCCcccC-CC---ccceeeeccCCC-------CcEEEEEEEEEecCC
Q 004037 347 NVLVIEVRDKDH-----F--VDDTLGDCTINISDLRD-GQ---RHDMWIPLQNIK-------IGRLHLAITVLEESA 405 (777)
Q Consensus 347 ~~L~V~V~D~D~-----~--~Dd~IG~v~I~L~~L~~-~~---~~~~W~~L~~~~-------~GeI~LsL~y~p~s~ 405 (777)
..|+|.||--.. + +..+||.+.++|+---. +. -+..|+.+...+ ..+|||.+...|+..
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPR 171 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPR 171 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCe
Confidence 479999998432 2 36899999999883211 12 257799996542 468999988666544
No 260
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=41.74 E-value=77 Score=29.69 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=45.8
Q ss_pred EEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCC------CCcEEEEEEeecCCCCCceeEEEEEeCCcccCCC--c
Q 004037 309 YVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQ--R 379 (777)
Q Consensus 309 YV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e------~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~--~ 379 (777)
||.+..-. +...|.++. ..+|.+|-+-.+.|...+ ....+.|+++..-......+|.++++|..+.... +
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 45555544 556677766 789999988877766321 2347899998865334789999999999886432 2
Q ss_pred cceeeeccC---CCCcEEEEEEEEE
Q 004037 380 HDMWIPLQN---IKIGRLHLAITVL 401 (777)
Q Consensus 380 ~~~W~~L~~---~~~GeI~LsL~y~ 401 (777)
......|.+ ..-|.|.+.+++.
T Consensus 81 i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred EEEEEEEeccCCCeEEEEEEEEEec
Confidence 333344432 3467777666543
No 261
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=41.58 E-value=50 Score=29.77 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=21.4
Q ss_pred hhhHHHH---HHHHHHHHHHHHHhcchhHHHHH-HHHhhheeeehhhHHHHHHHH
Q 004037 5 EISIMHH---VGIVLFLLWLLSYFDRCHPAAYF-ISLIYLYSVHDRYVMRLRRKV 55 (777)
Q Consensus 5 ~~~~~~~---~~~vl~~~wllg~~g~s~~~lll-v~~i~l~~~~~r~~~rlr~~i 55 (777)
..+|... .+++++++.++|++-..+.++++ +++++++| +-++..|+.+-+
T Consensus 2 ~~~w~~~l~~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~w-h~~~l~rL~~WL 55 (90)
T PF11808_consen 2 RNSWRRELWRLLLLLLAAALVGWLFGHLWWALLLGLLLYLFW-HLYQLYRLERWL 55 (90)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445443 33334555555544333333333 33444444 333444554444
No 262
>PLN02230 phosphoinositide phospholipase C 4
Probab=39.95 E-value=18 Score=43.39 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=41.8
Q ss_pred cCCCcCCcccccCCCccc-cccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--CceeeceEEeccCccc
Q 004037 410 DSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIWVHQPGSEV 486 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~-vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~gi~v~~pg~~v 486 (777)
.++|+++.+- |... -.++||++..+..||+|||.|.|...-.++-.++ +++.|.+ +.++-..+...|-+.+
T Consensus 496 ~DpyV~Vei~----Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllR--f~V~d~d~~~~ddfiGQ~~lPv~~L 569 (598)
T PLN02230 496 PDFFVRVGIA----GAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLR--VEVHEHDINEKDDFGGQTCLPVSEI 569 (598)
T ss_pred CCceEEEEEE----ECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEE--EEEEECCCCCCCCEEEEEEcchHHh
Confidence 3667776663 3221 1236777888889999999988866555555555 4444444 3344433434455544
No 263
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.85 E-value=54 Score=27.39 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=8.5
Q ss_pred ehhhHHHHHHHHHHHH
Q 004037 44 HDRYVMRLRRKVEFEE 59 (777)
Q Consensus 44 ~~r~~~rlr~~i~~e~ 59 (777)
.++..+++++++...+
T Consensus 46 ~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666655443
No 264
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=33.14 E-value=8 Score=45.98 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=50.6
Q ss_pred eEEEEEEEEecCCCCC--C--CCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 285 AYARVEVVEASDMKPS--D--LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~--D--~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
|....+++.|.++++- + ..-..+|++...++.+.++|+....+.+|+|||. .++..+++....|...|.+++...
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~ 358 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELD 358 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccccc
Confidence 4444555666655321 1 1224578999999999999999999999999998 777766554445555555554443
No 265
>PLN02952 phosphoinositide phospholipase C
Probab=31.47 E-value=35 Score=41.17 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=33.1
Q ss_pred CCCcCCcccccCCCccc-cccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 411 SPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 411 d~~~k~~L~~~~~g~~~-vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
++|+.+.+. |... ..++||.+.++..||+|||.|.|.....+.-.+ .+++.|.|.
T Consensus 498 D~yV~V~i~----G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAll--rf~V~D~D~ 553 (599)
T PLN02952 498 DFYTKMYIV----GVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALL--RIEVREYDM 553 (599)
T ss_pred CceEEEEEe----ccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEE--EEEEEecCC
Confidence 556655552 3221 124577777777999999998886654444333 456666553
No 266
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=30.92 E-value=68 Score=31.78 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcchhHHHHHHHHh---hheeeehhhHHHHH
Q 004037 16 LFLLWLLSYFDRCHPAAYFISLI---YLYSVHDRYVMRLR 52 (777)
Q Consensus 16 l~~~wllg~~g~s~~~lllv~~i---~l~~~~~r~~~rlr 52 (777)
++.+|+..|++++=.|..+++++ ..|+.-++|.++++
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~ 129 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLA 129 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567779999986665554443 34445577766654
No 267
>PF15192 TMEM213: TMEM213 family
Probab=28.95 E-value=46 Score=29.13 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=14.7
Q ss_pred HHHHHHHhcchhHHHHHHHHh
Q 004037 18 LLWLLSYFDRCHPAAYFISLI 38 (777)
Q Consensus 18 ~~wllg~~g~s~~~lllv~~i 38 (777)
-.||++..|||++++.+++++
T Consensus 45 yGWIAAAVGWSLwFLTLILLC 65 (82)
T PF15192_consen 45 YGWIAAAVGWSLWFLTLILLC 65 (82)
T ss_pred hhHHHHHHhHHHHHHHHHHHH
Confidence 369999999996555444443
No 268
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=27.86 E-value=66 Score=25.38 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 004037 50 RLRRKVEFEE 59 (777)
Q Consensus 50 rlr~~i~~e~ 59 (777)
+++++++..+
T Consensus 31 ~~~~~l~~~~ 40 (46)
T PF04995_consen 31 RLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 269
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=24.86 E-value=68 Score=26.75 Aligned_cols=40 Identities=15% Similarity=-0.015 Sum_probs=26.2
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
...+|.+...+.||.||+.|.+....... ....++..+..
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~~~~~~~--~~l~i~v~~~~ 71 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFPVLDPES--DTLTVEVWDKD 71 (102)
T ss_pred ceEecceeCCCCCCcccceEEEEccCCCC--CEEEEEEEecC
Confidence 34677777888999999998887755322 22345555544
No 270
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=23.55 E-value=67 Score=28.30 Aligned_cols=25 Identities=20% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhhee
Q 004037 16 LFLLWLLSYFDRCHPAAYFISLIYLYS 42 (777)
Q Consensus 16 l~~~wllg~~g~s~~~lllv~~i~l~~ 42 (777)
.+++|++.|+|.++ +.+++.+|+..
T Consensus 53 ~ywsYi~~Y~G~gi--l~~gm~IyllF 77 (79)
T PF10808_consen 53 QYWSYIFAYFGCGI--LSLGMIIYLLF 77 (79)
T ss_pred hhHHHHHHHHHHHH--HHHHHhheeEE
Confidence 47899999999985 56677777654
No 271
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.42 E-value=1.2e+02 Score=29.65 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHHHhC
Q 004037 70 KDSETVRWLNHAIEKMW 86 (777)
Q Consensus 70 ~d~EsveWLN~iL~~~W 86 (777)
++.+.+.=+|.+|+++=
T Consensus 65 ~~~~~~~~l~~LLKr~a 81 (146)
T PF14316_consen 65 DDAEWLAALNELLKRVA 81 (146)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 55566777788887753
No 272
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=20.71 E-value=4.3e+02 Score=26.18 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=55.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC-----------CCCcEEEEEEee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-----------DSPNVLVIEVRD 355 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~-----------e~~~~L~V~V~D 355 (777)
|+|+-+.|-|.- .....|-|..+++.++-.+|+......-=.++|.|.|+-.-. -....+.|+++.
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 455555554443 234568999999999999998776666567789988862210 123467777776
Q ss_pred cCCCCCceeEEEEEeCCccc
Q 004037 356 KDHFVDDTLGDCTINISDLR 375 (777)
Q Consensus 356 ~D~~~Dd~IG~v~I~L~~L~ 375 (777)
...-....|...+-++.++.
T Consensus 81 l~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EeCCCCcEEEEEeccccceE
Confidence 55544666666666666543
No 273
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=20.62 E-value=2.3e+02 Score=24.49 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=5.4
Q ss_pred HHHHHHHHhcc
Q 004037 17 FLLWLLSYFDR 27 (777)
Q Consensus 17 ~~~wllg~~g~ 27 (777)
...|++|...+
T Consensus 17 ~vi~~v~~~~~ 27 (69)
T PF14012_consen 17 AVIWLVGLLIG 27 (69)
T ss_pred HHHHHHHHHhc
Confidence 34565555443
No 274
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=20.52 E-value=8.5e+02 Score=24.26 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=51.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CC--------e-EEEeeeecCC-----CCCcccceeeEecccCC--CCcE
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQL--GP--------Y-RFRTKTQRKT-----LSPKWHEEFNIPISTWD--SPNV 348 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~--------~-k~kTkVi~~T-----lnP~WnEtF~f~V~~~e--~~~~ 348 (777)
+.-.|..|.+.. ..+-||+-.+ ++ . ...|.+...+ -.-.||.-|++.+.... .-..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344577888664 3466888665 22 3 4666665432 34578988877665321 2247
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINIS 372 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~ 372 (777)
|.|+||..|..+ +.+.|...+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999987 777777666554
No 275
>PLN02222 phosphoinositide phospholipase C 2
Probab=20.45 E-value=80 Score=38.03 Aligned_cols=55 Identities=9% Similarity=-0.095 Sum_probs=32.6
Q ss_pred cCCCcCCcccccCCCccc-cccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~-vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.++|+.+.+. |... ..++||++.++..||+|||.|.|.....++--++ +.+.|.|
T Consensus 479 ~dpyV~Vei~----G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllR--f~V~d~D 534 (581)
T PLN02222 479 PDFYTRVGIA----GVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLR--LEVHEYD 534 (581)
T ss_pred CCeeEEEEEe----ccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEE--EEEEECC
Confidence 3556666662 3221 1235677766668999999988876444444444 5555543
Done!