BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004038
(777 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/693 (59%), Positives = 515/693 (74%), Gaps = 12/693 (1%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R P+ YRNIGI AHIDAGKTTTTER+LFYTG N+KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 2 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 61
Query: 143 ITSAATTTYWN-------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAATT +W+ HRINIIDTPGHVDFT+EVER++RVLDGA+ ++ +V GV+PQ
Sbjct: 62 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 121
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA+KY VPRI FVNKMDR+GANF + + I T LGA P+ +QL +GAE++F GV
Sbjct: 122 SETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGV 181
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
VDLVKMKAI W+ + G F YEDIPA++ ++A E+ +IE+ E +E ME YL G E
Sbjct: 182 VDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 241
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
E IK +R+ + + V CGSAFKNKGVQ +LDAV+DYLPSP+D+PA+ G +
Sbjct: 242 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDG 301
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
+ ER ASDDEPF+ LAFKI +DPFVG+LTF RVY+G +++G VLN+ K +ER GR
Sbjct: 302 KDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGR 361
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
+++MHAN RE++K KD TG+TLCD D PI+LERM+FP+PVI +A+EP
Sbjct: 362 IVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEP 421
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN 555
KTKAD +KM L +LA+EDPSF DEE NQT+I GMGELHL+IIVDR+KREF VEAN
Sbjct: 422 KTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEAN 481
Query: 556 VGAPQVNYRESI-SKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGS---GYEFKSEIKG 611
VG PQV YRE+I KV++V+ H KQSGG+GQ+ + + P+E GS GYEF ++IKG
Sbjct: 482 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKG 541
Query: 612 GAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFR 671
G +P EYIP V KG++E + G LAG+PVVD+ L GSYHDVDSS LAF+LAA AF+
Sbjct: 542 GVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFK 601
Query: 672 EGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLA 731
EG +KA P +LEPIMKVEV TPEE+ GDVIGDL+ RRG + + G+K + A VPL+
Sbjct: 602 EGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK-IHAEVPLS 660
Query: 732 EMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 764
EMF Y + LR +TKGRASY M+ K+D P ++
Sbjct: 661 EMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV 693
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/693 (59%), Positives = 515/693 (74%), Gaps = 12/693 (1%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R P+ YRNIGI AHIDAGKTTTTER+LFYTG N+KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWN-------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAATT +W+ HRINIIDTPGHVDFT+EVER++RVLDGA+ ++ +V GV+PQ
Sbjct: 63 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 122
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA+KY VPRI FVNKMDR+GANF + + I T LGA P+ +QL +GAE++F GV
Sbjct: 123 SETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGV 182
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
VDLVKMKAI W+ + G F YEDIPA++ ++A E+ +IE+ E +E ME YL G E
Sbjct: 183 VDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
E IK +R+ + + V CGSAFKNKGVQ +LDAV+DYLPSP+D+PA+ G +
Sbjct: 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDG 302
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
+ ER ASDDEPF+ LAFKI +DPFVG+LTF RVY+G +++G VLN+ K +ER GR
Sbjct: 303 KDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGR 362
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
+++MHAN RE++K KD TG+TLCD D PI+LERM+FP+PVI +A+EP
Sbjct: 363 IVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEP 422
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN 555
KTKAD +KM L +LA+EDPSF DEE NQT+I GMGELHL+IIVDR+KREF VEAN
Sbjct: 423 KTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEAN 482
Query: 556 VGAPQVNYRESI-SKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGS---GYEFKSEIKG 611
VG PQV YRE+I KV++V+ H KQSGG+GQ+ + + P+E GS GYEF ++IKG
Sbjct: 483 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKG 542
Query: 612 GAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFR 671
G +P EYIP V KG++E + G LAG+PVVD+ L GSYHDVDSS LAF+LAA AF+
Sbjct: 543 GVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFK 602
Query: 672 EGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLA 731
EG +KA P +LEPIMKVEV TPEE+ GDVIGDL+ RRG + + G+K + A VPL+
Sbjct: 603 EGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK-IHAEVPLS 661
Query: 732 EMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 764
EMF Y + LR +TKGRASY M+ K+D P ++
Sbjct: 662 EMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV 694
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/704 (57%), Positives = 516/704 (73%), Gaps = 15/704 (2%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R P+ YRNIGI AH+DAGKTTTTERVLFYTG N+K+GEVH+G AT DWM QEQERGIT
Sbjct: 6 RTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGIT 65
Query: 143 ITSAATTTYW-------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAA TT+W + +R+N+IDTPGHVDFT+EVER+LRVLDGA+ +F +GVEPQ
Sbjct: 66 ITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ 125
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA+KYGVPRI +VNKMDR GANF R + I LG P+ VQL +GAE+NF G
Sbjct: 126 SETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQ 185
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
VDL+KMKAI W+ ++ G + E+IPA L+ +A+E+RS M+E E ++E M YLE E
Sbjct: 186 VDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGE 245
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
E IK+ +R T+A VP +CGS+FKNKGV +LDAV+DYLP+P ++PA+KG P++
Sbjct: 246 LSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDD 305
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
ER A D+EPF+ LAFKI +DPFVG+LTF RVY+G LS+G VLN+ KGKKER+GR
Sbjct: 306 ETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGR 365
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
+++MHAN RE++K KD TG+TLC + PI+LERMDFP+PVI VA+EP
Sbjct: 366 MVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVEP 425
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN 555
KTKAD +KM L KLAQEDPSF DEE QT+I GMGELHL+IIVDR+KREF VEAN
Sbjct: 426 KTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEAN 485
Query: 556 VGAPQVNYRESISKVS-EVKYVHKKQSGGQGQFADITVRFEPM---EAGS---GYEFKSE 608
+G PQV YRE+I+K + E++ +QSGG+GQF +RF E G+ G F++E
Sbjct: 486 IGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENE 545
Query: 609 IKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARG 668
+ GG VPKEYIP + KG+EE M NGV+AG+P++ ++A + DGSYHDVDS+ +AF++AA
Sbjct: 546 VVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASM 605
Query: 669 AFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALV 728
A ++ +K G K+LEPIMKVEVVTPE+++GDV+GDLN RRG I D G KV+ A V
Sbjct: 606 ATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSG-KVIRAEV 664
Query: 729 PLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 772
PL EMF Y + +R M++GRASY M+ +K+ P +I L K+
Sbjct: 665 PLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/684 (57%), Positives = 499/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/684 (57%), Positives = 499/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/684 (57%), Positives = 498/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIID PGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/684 (57%), Positives = 498/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNI I AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/684 (57%), Positives = 498/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSY +VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/684 (57%), Positives = 497/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KI EVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIID PGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/684 (57%), Positives = 498/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSY +VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/684 (57%), Positives = 495/684 (72%), Gaps = 7/684 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIID PGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 69 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 189 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 366 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 425
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+E P+F S E T+I GMGEL LEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 426 QALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGKPQVAYRE 485
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 545
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSYH+VDSS +AF++A A +E ++K P +LEPI
Sbjct: 546 IEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 605
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 606 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 663
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 664 QGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/692 (54%), Positives = 499/692 (72%), Gaps = 4/692 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L+ RNIGIMAHIDAGKTTTTER+L+YTGR +KIGE HEG + MDWMEQEQ+RGIT
Sbjct: 3 REFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT W HR+NIIDTPGHVDFT+EVER+LRVLDGA+ + D+ +GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A YGVPRI FVNKMD+LGANF + + L A +QLP+GAED F+ ++DLV+MK
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
++ + LG + +IP + A+E R+ +IE + E DE ME YL E +K
Sbjct: 183 CFKYTND-LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+ IR+ T F PVLCG+AFKNKGVQ +LDAV+DYLPSPLD+ + G NPE +
Sbjct: 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIA 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D FA LAFK+M+DP+VG LTF RVY+GT+++GSYV N+ KGK+ER+GRLL+MHAN
Sbjct: 302 KADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHAN 361
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SR+++ KDT TG+TLC + I+LE M+FP+PVI +++EPK+KAD D
Sbjct: 362 SRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQD 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 562
KM L+KL +EDP+FH DEE Q +I GMGELHL+I+VDR+K+EF VE NVGAP V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 622
YRE+ ++V+ +QSGG+GQ+ D+ + F P E G+G+EF++ I GG VP+EYIP V
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
Query: 623 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKML 682
GL++ M NGVLAG+P++DV+A L DGSYHDVDSS +AF++AA A +E +K P +L
Sbjct: 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVIL 601
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALR 741
EP+MKV + PEE++GD++GD+ SRRG+++ G +P G +VV+A VPL+EMF Y ++LR
Sbjct: 602 EPMMKVTIEMPEEYMGDIMGDVTSRRGRVD--GMEPRGNAQVVNAYVPLSEMFGYATSLR 659
Query: 742 GMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773
T+GR +Y M + VP+ I + K +
Sbjct: 660 SNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/692 (54%), Positives = 499/692 (72%), Gaps = 4/692 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L+ RNIGI+AHIDAGKTTTTER+L+YTGR +KIGE HEG + MDWMEQEQ+RGIT
Sbjct: 3 REFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT W HR+NIIDTPGHVDFT+EVER+LRVLDGA+ + D+ +GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A YGVPRI FVNKMD+LGANF + + L A +QLP+GAED F+ ++DLV+MK
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
++ + LG + +IP + A+E R+ +IE + E DE ME YL E +K
Sbjct: 183 CFKYTND-LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+ IR+ T F PVLCG+AFKNKGVQ +LDAV+DYLPSPLD+ + G NPE +
Sbjct: 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIA 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D FA LAFK+M+DP+VG LTF RVY+GT+++GSYV N+ KGK+ER+GRLL+MHAN
Sbjct: 302 KADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHAN 361
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SR+++ KDT TG+TLC + I+LE M+FP+PVI +++EPK+KAD D
Sbjct: 362 SRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQD 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 562
KM L+KL +EDP+FH DEE Q +I GMGELHL+I+VDR+K+EF VE NVGAP V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 622
YRE+ ++V+ +QSGG+GQ+ D+ + F P E G+G+EF++ I GG VP+EYIP V
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
Query: 623 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKML 682
GL++ M NGVLAG+P++DV+A L DGSYHDVDSS +AF++AA A +E +K P +L
Sbjct: 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVIL 601
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALR 741
EP+MKV + PEE++GD++GD+ SRRG+++ G +P G +VV+A VPL+EMF Y ++LR
Sbjct: 602 EPMMKVTIEMPEEYMGDIMGDVTSRRGRVD--GMEPRGNAQVVNAYVPLSEMFGYATSLR 659
Query: 742 GMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773
T+GR +Y M + VP+ I + K +
Sbjct: 660 SNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/692 (54%), Positives = 498/692 (71%), Gaps = 4/692 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L+ RNIGIMAHIDAGKTTTTER+L+YTGR +KIGE HEG + MDWMEQEQ+RGIT
Sbjct: 3 REFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT W HR+NIIDTPGHVD T+EVER+LRVLDGA+ + D+ +GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A YGVPRI FVNKMD+LGANF + + L A +QLP+GAED F+ ++DLV+MK
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
++ + LG + +IP + A+E R+ +IE + E DE ME YL E +K
Sbjct: 183 CFKYTND-LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+ IR+ T F PVLCG+AFKNKGVQ +LDAV+DYLPSPLD+ + G NPE +
Sbjct: 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIA 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D FA LAFK+M+DP+VG LTF RVY+GT+++GSYV N+ KGK+ER+GRLL+MHAN
Sbjct: 302 KADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHAN 361
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SR+++ KDT TG+TLC + I+LE M+FP+PVI +++EPK+KAD D
Sbjct: 362 SRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQD 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 562
KM L+KL +EDP+FH DEE Q +I GMGELHL+I+VDR+K+EF VE NVGAP V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 622
YRE+ ++V+ +QSGG+GQ+ D+ + F P E G+G+EF++ I GG VP+EYIP V
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
Query: 623 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKML 682
GL++ M NGVLAG+P++DV+A L DGSYHDVDSS +AF++AA A +E +K P +L
Sbjct: 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVIL 601
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALR 741
EP+MKV + PEE++GD++GD+ SRRG+++ G +P G +VV+A VPL+EMF Y ++LR
Sbjct: 602 EPMMKVTIEMPEEYMGDIMGDVTSRRGRVD--GMEPRGNAQVVNAYVPLSEMFGYATSLR 659
Query: 742 GMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773
T+GR +Y M + VP+ I + K +
Sbjct: 660 SNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/692 (54%), Positives = 498/692 (71%), Gaps = 4/692 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L+ RNIGI+AHIDAGKTTTTER+L+YTGR +KIGE HEG + MDWMEQEQ+RGIT
Sbjct: 3 REFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT W HR+NIIDTPGHVD T+EVER+LRVLDGA+ + D+ +GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A YGVPRI FVNKMD+LGANF + + L A +QLP+GAED F+ ++DLV+MK
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
++ + LG + +IP + A+E R+ +IE + E DE ME YL E +K
Sbjct: 183 CFKYTND-LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+ IR+ T F PVLCG+AFKNKGVQ +LDAV+DYLPSPLD+ + G NPE +
Sbjct: 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIA 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D FA LAFK+M+DP+VG LTF RVY+GT+++GSYV N+ KGK+ER+GRLL+MHAN
Sbjct: 302 KADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHAN 361
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SR+++ KDT TG+TLC + I+LE M+FP+PVI +++EPK+KAD D
Sbjct: 362 SRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQD 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 562
KM L+KL +EDP+FH DEE Q +I GMGELHL+I+VDR+K+EF VE NVGAP V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 622
YRE+ ++V+ +QSGG+GQ+ D+ + F P E G+G+EF++ I GG VP+EYIP V
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
Query: 623 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKML 682
GL++ M NGVLAG+P++DV+A L DGSYHDVDSS +AF++AA A +E +K P +L
Sbjct: 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVIL 601
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALR 741
EP+MKV + PEE++GD++GD+ SRRG+++ G +P G +VV+A VPL+EMF Y ++LR
Sbjct: 602 EPMMKVTIEMPEEYMGDIMGDVTSRRGRVD--GMEPRGNAQVVNAYVPLSEMFGYATSLR 659
Query: 742 GMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773
T+GR +Y M + VP+ I + K +
Sbjct: 660 SNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/684 (54%), Positives = 471/684 (68%), Gaps = 35/684 (5%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
LK RNIGI AHIDAGKTTTTER+L+YTGR A
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTERILYYTGR----------------------------IA 35
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+KY
Sbjct: 36 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 95
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA +
Sbjct: 96 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 155
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
G +LG IP A+EY +++E + D+ M YLEG EP EE + IR
Sbjct: 156 -GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 214
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 215 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPDP 272
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE+
Sbjct: 273 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 332
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K++
Sbjct: 333 VEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLS 392
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YRE
Sbjct: 393 QALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 452
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V KG
Sbjct: 453 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKG 512
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+EE M +G L GFPVVD++ L DGSY +VDSS +AF++A A +E ++K P +LEPI
Sbjct: 513 IEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 572
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 573 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 630
Query: 745 KGRASYIMQLAKFDVVPQHIQNQL 768
+GR S++M + VP+ +Q +L
Sbjct: 631 QGRGSFVMFFDHYQEVPKQVQEKL 654
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/683 (33%), Positives = 369/683 (54%), Gaps = 40/683 (5%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150
R + ++ H +GKTT TE +L+ TG + G V EGT T D+ + + T+ +
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR 210
+ HR+ ++D PG+ DF E+ AL D A+ + AGV+ +E W A++ G+PR
Sbjct: 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR 129
Query: 211 ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW-SGE 269
+ V K+D+ G +++ + + + LG L + LP+ + G++D+ KA + +GE
Sbjct: 130 MVVVTKLDK-GGDYYALLEDLRSTLGPI-LPIDLPLYEGGKWVGLIDVFHGKAYRYENGE 187
Query: 270 ELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329
E A ++P ++ Q +R +++E IVE D+ +E YLEG E E ++K +
Sbjct: 188 EREA-----EVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 242
Query: 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEP 389
G PV S + GV PLL+ +++ LPSP + D P
Sbjct: 243 RRGLLYPVALASGEREIGVLPLLELILEALPSPTE------------------RFGDGPP 284
Query: 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449
A + FK+ DPF+G + ++R+Y G L G L + G+ R+ L +V+
Sbjct: 285 LAKV-FKVQVDPFMGQVAYLRLYRGRLKPGD-SLQSEAGQV-RLPHLYVPMGKDLLEVEE 341
Query: 450 XXXXXXXXXXXXKDTITGETLCDADHP----ILLERMDFPDPVIKVAIEPKTKADIDKMA 505
+ G L + P + R+ PDP + VA+ PK + D ++
Sbjct: 342 AEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARL--PDPNVPVALHPKGRTDEARLG 399
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
L KL +EDPS R EE + ++ G GELHL +RL+ ++ VE P+V YRE
Sbjct: 400 EALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRE 458
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
+I KV+E + +KKQ+GG GQ+ D+ +R EP S Y F+ I GG +P +Y + +G
Sbjct: 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEP---ASEYGFEWRITGGVIPSKYQEAIEEG 515
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
++E GVLAGFPV+ +A + +GSYH+VDSS LAFQ+AA AF++ M +A P +LEPI
Sbjct: 516 IKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPI 575
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTK 745
+++V+ P+E +GDV+ DL +RRG+I ++ G L VV A VPLAE+ +Y AL G+T
Sbjct: 576 YRLKVLAPQERVGDVLSDLQARRGRILGM-EQEGALSVVHAEVPLAEVLEYYKALPGLTG 634
Query: 746 GRASYIMQLAKFDVVPQHIQNQL 768
G +Y ++ + + VP H+ ++
Sbjct: 635 GAGAYTLEFSHYAEVPPHLAQRI 657
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 167/674 (24%), Positives = 300/674 (44%), Gaps = 72/674 (10%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
NIG++AH+DAGKTT TE +L+ +G ++G V +GT D E++RGITI + T+
Sbjct: 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ 63
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
W ++NIIDTPGH+DF EV R+L VLDGAI L + GV+ Q+ ++ K G+P I
Sbjct: 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI 123
Query: 212 CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ----LPVGAEDNFKGVVDLVKMKAIIWS 267
F+NK+D+ G + I L A+ ++ Q P NF
Sbjct: 124 FFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFT-------------- 169
Query: 268 GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327
S+ +T++E +D+ +E Y+ G + +++
Sbjct: 170 ------------------------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESI 205
Query: 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387
S P+ GSA N G+ L++ + + S + R S+
Sbjct: 206 RFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS-----------------STHRGPSE- 247
Query: 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDV 447
G FKI L ++R+Y+G L V +KE+I ++ EM+ + ++
Sbjct: 248 --LCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV---RVSEKEKI-KVTEMYTSINGEL 301
Query: 448 KVXXXXXXXXXXXXKDTITGETLCDADHPILLER--MDFPDPVIKVAIEPKTKADIDKMA 505
++ D +L +R ++ P P+++ +EP + +
Sbjct: 302 CKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLL 361
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565
+ L++++ DP + D ++ ++ +G++ +E+I L+ ++ VE + P V Y E
Sbjct: 362 DALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYME 421
Query: 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625
K +E Y + +A I + P+ GSG +++S + G + + + VM+G
Sbjct: 422 RPLKNAE--YTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 479
Query: 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPI 685
+ G L G+ V D + G Y+ S+ F++ A + ++KAG ++LEP
Sbjct: 480 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 538
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTK 745
+ ++ P+E+L D I K + ++ +P + +Y S L T
Sbjct: 539 LSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEV-ILSGEIPARCIQEYRSDLTFFTN 597
Query: 746 GRASYIMQLAKFDV 759
GR+ + +L + V
Sbjct: 598 GRSVCLTELKGYHV 611
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 215/813 (26%), Positives = 334/813 (41%), Gaps = 187/813 (23%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM-DWMEQEQERGITITS 145
+ + RN+ ++AH+D GK+T T+ ++ G I G A D + EQERGITI S
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAG---IISAAKAGEARFTDTRKDEQERGITIKS 72
Query: 146 AATTTY----------------WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189
A + Y N IN+ID+PGHVDF+ EV ALRV DGA+ + D++
Sbjct: 73 TAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 190 AGVEPQSETVWRQADKYGVPRICFVNKMDR-----------LGANFFRT---RDMIVTNL 235
GV Q+ETV RQA + + +NK+DR L F RT ++IV+
Sbjct: 133 EGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTY 192
Query: 236 GAKPL--VVQLPVGAEDNF--------------------KGVVDLVKMKAIIWSGEELG- 272
+ L V P F K VD KM +W
Sbjct: 193 ADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 252
Query: 273 --AKFAYEDIPANLQKMAQEYRSQMIETIVEL---------DD-----EAMESYLEGNEP 316
K+ +D A + + + + +++ I L D+ E +E L+G+E
Sbjct: 253 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 312
Query: 317 DEE---TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTD- 372
D E +K ++RK F+P LL+ +V +LPSP+ A +
Sbjct: 313 DLEGKALLKVVMRK------FLP----------AADALLEMIVLHLPSPVTAQAYRAEQL 356
Query: 373 ---PENPEATLERAASDDEPFAGLAF---KIMSDPFVGSL-TFVRVYAGTLSAGSYVL-- 423
P + + A + +P A L K++ G F RV+AGT+ +G V
Sbjct: 357 YEGPADDANCI--AIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414
Query: 424 --NANKGKKE-----RIGRLLEMHANSREDV-KVXXXXXXXXXXXXKDTITGETLCDADH 475
N GKK+ I R++ M E + + + TL ++
Sbjct: 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET 474
Query: 476 PILLERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 534
++ M F PV++VA+E K D+ K+ GL +L++ DP + E + ++ G
Sbjct: 475 AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGT 533
Query: 535 GELHLEIIVDRLKREFK-VEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 593
GELHLEI + L+ + V + P V YRE++ S + K + + I ++
Sbjct: 534 GELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPN----KHNRIYLK 589
Query: 594 FEPMEAGSGYEFKSEIKGGAV-PKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALV---D 649
EP++ E I+ G + P++ K M++ G+ V D R D
Sbjct: 590 AEPIDE----EVSLAIENGIINPRDD----FKARARIMADDY--GWDVTDARKIWCFGPD 639
Query: 650 GS--------------YHDV-DSSVLAFQLAARGA--FREGMRK---------------- 676
G+ H++ DS V AFQ A + F E MR
Sbjct: 640 GNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIX 699
Query: 677 --------------------AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGD 716
A PK+ EP+ VE+ PE+ +G + LN +RGQ+ S
Sbjct: 700 RGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQ 759
Query: 717 KPGG-LKVVDALVPLAEMFQYVSALRGMTKGRA 748
+PG L V A +P+ E F + LR T G+A
Sbjct: 760 RPGTPLFTVKAYLPVNESFGFTGELRQATGGQA 792
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 215/813 (26%), Positives = 334/813 (41%), Gaps = 187/813 (23%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM-DWMEQEQERGITITS 145
+ + RN+ ++AH+D GK+T T+ ++ G I G A D + EQERGITI S
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAG---IISAAKAGEARFTDTRKDEQERGITIKS 72
Query: 146 AATTTY----------------WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189
A + Y N IN+ID+PGHVDF+ EV ALRV DGA+ + D++
Sbjct: 73 TAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 190 AGVEPQSETVWRQADKYGVPRICFVNKMDR-----------LGANFFRT---RDMIVTNL 235
GV Q+ETV RQA + + +NK+DR L F RT ++IV+
Sbjct: 133 EGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTY 192
Query: 236 GAKPL--VVQLPVGAEDNF--------------------KGVVDLVKMKAIIWSGEELG- 272
+ L V P F K VD KM +W
Sbjct: 193 ADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 252
Query: 273 --AKFAYEDIPANLQKMAQEYRSQMIETIVEL---------DD-----EAMESYLEGNEP 316
K+ +D A + + + + +++ I L D+ E +E L+G+E
Sbjct: 253 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 312
Query: 317 DEE---TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTD- 372
D E +K ++RK F+P LL+ +V +LPSP+ A +
Sbjct: 313 DLEGKALLKVVMRK------FLP----------AADALLEMIVLHLPSPVTAQAYRAEQL 356
Query: 373 ---PENPEATLERAASDDEPFAGLAF---KIMSDPFVGSL-TFVRVYAGTLSAGSYVL-- 423
P + + A + +P A L K++ G F RV+AGT+ +G V
Sbjct: 357 YEGPADDANCI--AIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414
Query: 424 --NANKGKKE-----RIGRLLEMHANSREDV-KVXXXXXXXXXXXXKDTITGETLCDADH 475
N GKK+ I R++ M E + + + TL ++
Sbjct: 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET 474
Query: 476 PILLERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 534
++ M F PV++VA+E K D+ K+ GL +L++ DP + E + ++ G
Sbjct: 475 AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGT 533
Query: 535 GELHLEIIVDRLKREFK-VEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 593
GELHLEI + L+ + V + P V YRE++ S + K + + I ++
Sbjct: 534 GELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPN----KHNRIYLK 589
Query: 594 FEPMEAGSGYEFKSEIKGGAV-PKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALV---D 649
EP++ E I+ G + P++ K M++ G+ V D R D
Sbjct: 590 AEPIDE----EVSLAIENGIINPRDD----FKARARIMADDY--GWDVTDARKIWCFGPD 639
Query: 650 GS--------------YHDV-DSSVLAFQLAARGA--FREGMRK---------------- 676
G+ H++ DS V AFQ A + F E MR
Sbjct: 640 GNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIH 699
Query: 677 --------------------AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGD 716
A PK+ EP+ VE+ PE+ +G + LN +RGQ+ S
Sbjct: 700 RGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQ 759
Query: 717 KPGG-LKVVDALVPLAEMFQYVSALRGMTKGRA 748
+PG L V A +P+ E F + LR T G+A
Sbjct: 760 RPGTPLFTVKAYLPVNESFGFTGELRQATGGQA 792
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 204/472 (43%), Gaps = 34/472 (7%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA----TMDWMEQEQERGITITSAA 147
I++H DAGKTT TE++L + G G V A T DWM E+ERGI++T++
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+ +N++DTPGH DF+ + R L +D A+ + D+ GVE Q+ +
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 208 VPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWS 267
P + FVNKMDR + I +L + + P+G +FKG DL+ + ++S
Sbjct: 153 TPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFS 212
Query: 268 GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327
G + I EY E + +D +E G DEE K
Sbjct: 213 ATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL-RMDLALLEE--AGTPFDEERYLK---- 265
Query: 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387
G PV GSA N GV+ +LD V++ P P PA T P +
Sbjct: 266 ----GELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPA--ATRVVEP---------GE 310
Query: 388 EPFAGLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSR 444
E F G+ FKI M + F+R+ +GT + G + + GK + A R
Sbjct: 311 EAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDR 370
Query: 445 EDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERM-DF-PDPVIKVAIEPKTKADID 502
V+ G+T ++ + + +F P+ +V ++ KA
Sbjct: 371 TGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKA--K 428
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEA 554
++ GL +LA+E + R N ++ +G L ++IV RL E+ V+A
Sbjct: 429 QLQKGLEQLAEEG-AVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDA 479
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 123/479 (25%), Positives = 204/479 (42%), Gaps = 47/479 (9%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA----TMDWMEQEQERGITITSA 146
R I++H DAGKTT TE++L + G G + A T DW E E++RGI++T++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
+ + IN++DTPGH DFT + R L +D A+ + D+ GVEP++ +
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLR 133
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
P F+NK DR D I + L V P+G FKG+ L++ ++
Sbjct: 134 HTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIEDAIYLY 193
Query: 267 S---GEELGAKFAYE-----DIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318
E +G E ++ L +A E R++ +EL A + P E
Sbjct: 194 QPGKHERVGESERIEGINNPELDKKLGDLASELRNE-----IELVKGA-------SHPFE 241
Query: 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 378
R+G + G P+ GSA N GV LLDA V P P+ E
Sbjct: 242 -------REGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPP-----------PQGRET 283
Query: 379 TLERAASDDEPFAGLAFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
++E F+G FKI ++ G + F+R+ +G G + K+ +I
Sbjct: 284 NSRLVKPEEEKFSGFVFKIQANXDPGHRDRIAFLRIASGQYQKGXKAYHVRLKKEIQINN 343
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
L A RE+ + G+T + +F + ++ +
Sbjct: 344 ALTFXAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRL-VRL 402
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEA 554
K + GL +L++E + F R + N+ ++ +G L +++ RL+ E+ V+
Sbjct: 403 KDPLKQKALLKGLTQLSEEGATQLF-RPLDSNELILGAVGLLQFDVVAYRLENEYNVKC 460
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 211/490 (43%), Gaps = 68/490 (13%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSA 146
R I++H DAGKTT TE+VL + G V A DWME E++RGI+IT++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
++ +N++DTPGH DF+ + R L +D + + D+ GVE ++ +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
P + F+NK+DR + D + L + P+G FKGV L K + ++
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 267 -SGE-------ELGAKFAYEDIPANL-QKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 317
SG+ + D+ A + + +AQ+ R ++ EL A NE D
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDEL-----ELVKGA------SNEFD 242
Query: 318 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPE 377
+E +AG PV G+A N GV +LD +V++ P+P+ + TD E
Sbjct: 243 KELF--------LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMP----RQTDTRTVE 290
Query: 378 ATLERAASDDEPFAGLAFKIMS--DP-FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIG 434
A+ ++ F G FKI + DP + F+RV +G G + K I
Sbjct: 291 AS-------EDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVIS 343
Query: 435 RLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADH----------PILLERMDF 484
L A R V+ G+T + P L R+
Sbjct: 344 DALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRL 403
Query: 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 544
DP+ K K ++ GL++L++E + R N ++ +G L +++V
Sbjct: 404 KDPL-------KQK----QLLKGLVQLSEEG-AVQVFRPISNNDLIVGAVGVLQFDVVVA 451
Query: 545 RLKREFKVEA 554
RLK E+ VEA
Sbjct: 452 RLKSEYNVEA 461
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 211/490 (43%), Gaps = 68/490 (13%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSA 146
R I++H DAGKTT TE+VL + G V A DWME E++RGI+IT++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
++ +N++DTPGH DF+ + R L +D + + D+ GVE ++ +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
P + F+NK+DR + D + L + P+G FKGV L K + ++
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 267 -SGE-------ELGAKFAYEDIPANL-QKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 317
SG+ + D+ A + + +AQ+ R ++ EL A NE D
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDEL-----ELVKGA------SNEFD 242
Query: 318 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPE 377
+E +AG PV G+A N GV +LD +V++ P+P+ + TD E
Sbjct: 243 KELF--------LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMP----RQTDTRTVE 290
Query: 378 ATLERAASDDEPFAGLAFKIMS--DP-FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIG 434
A+ ++ F G FKI + DP + F+RV +G G + K I
Sbjct: 291 AS-------EDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVIS 343
Query: 435 RLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADH----------PILLERMDF 484
L A R V+ G+T + P L R+
Sbjct: 344 DALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRL 403
Query: 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 544
DP+ K K ++ GL++L++E + R N ++ +G L +++V
Sbjct: 404 KDPL-------KQK----QLLKGLVQLSEEG-AVQVFRPISNNDLIVGAVGVLQFDVVVA 451
Query: 545 RLKREFKVEA 554
RLK E+ VEA
Sbjct: 452 RLKSEYNVEA 461
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K+ RN I+AH+D GK+T +R+L YTG I E + +D ++ E+ERGIT+ A
Sbjct: 4 KNVRNFCIIAHVDHGKSTLADRLLEYTG---AISEREKREQLLDTLDVERERGITVKXQA 60
Query: 148 TTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
++ N +++++IDTPGHVDF+ EV RAL +GA+ L D+ G+E Q+ + +
Sbjct: 61 VRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK 120
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239
A + + I +NK+D A+ R + I LG P
Sbjct: 121 AVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 38/240 (15%)
Query: 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397
+ SA + G++ +L+A+V+ +P P KG DP+ +P L F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KG-DPQ-------------KPLKALIFDS 200
Query: 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXX--- 454
DP+ G++ FVR++ G + G + + GK+ + E+ A + + K
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEV---TEVGAQTPKXTKFDKLSAGDV 257
Query: 455 ---XXXXXXXKDTITGETLCDADHPILLERMDF--PDPVIKVAIEPKTKADIDKMANGLI 509
+D G+T+ A +P F P + I P +++ + L
Sbjct: 258 GYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALE 317
Query: 510 KLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR 564
K A D + + + E + + G +G LH EI+ +RL+RE+ V+ AP V YR
Sbjct: 318 KYAINDAAIVY--EPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR 375
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRG-QINSFGDKPGGLKVVDALVPLAEMF-QYVSAL 740
EP + V ++TP+E++G +I +RG Q N P + ++ PL+E+ + +
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNXTYLDPNTV-YLEYEXPLSEIIVDFHDKI 463
Query: 741 RGMTKGRASY 750
+ +++G ASY
Sbjct: 464 KSISRGFASY 473
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K+ RN I+AH+D GK+T +R+L YTG I E + +D ++ E+ERGIT+ A
Sbjct: 4 KNVRNFCIIAHVDHGKSTLADRLLEYTG---AISEREKREQLLDTLDVERERGITVKMQA 60
Query: 148 TTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
++ N +++++IDTPGHVDF+ EV RAL +GA+ L D+ G+E Q+ + +
Sbjct: 61 VRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK 120
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239
A + + I +NK+D A+ R + I LG P
Sbjct: 121 AVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 34/238 (14%)
Query: 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397
+ SA + G++ +L+A+V+ +P P KG DP+ +P L F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KG-DPQ-------------KPLKALIFDS 200
Query: 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXX--- 454
DP+ G++ FVR++ G + G ++ + GK+ + E+ A + + K
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVT---EVGAQTPKMTKFDKLSAGDV 257
Query: 455 ---XXXXXXXKDTITGETLCDADHPILLERMDF--PDPVIKVAIEPKTKADIDKMANGLI 509
+D G+T+ A +P F P++ I P +++ + L
Sbjct: 258 GYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALE 317
Query: 510 KLAQEDPSFHFSRDEEINQTV---IEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564
K A D + + + + + +G LH+EI+ +RL+RE+ V+ AP V YR
Sbjct: 318 KYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 683 EPIMKVEVVTPEEHLGDVIGDLNSRRG-QINSFGDKPGGLKVVDALVPLAEMF-QYVSAL 740
EP + V ++TP+E++G +I +RG Q N P + ++ +PL+E+ + +
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTV-YLEYEMPLSEIIVDFHDKI 463
Query: 741 RGMTKGRASY 750
+ +++G ASY
Sbjct: 464 KSISRGFASY 473
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
+K+ RN I+AHID GK+T ++R++ G + + +D M+ E+ERGITI +
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICG---GLSDREMEAQVLDSMDLERERGITIKAQ 57
Query: 147 ATTTYWN-----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR 201
+ T + +++N IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 202 QADKYGVPRICFVNKMD 218
A + + + +NK+D
Sbjct: 118 TAMEMDLEVVPVLNKID 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXX 459
D ++G ++ +R+ GTL G V + G+ RL + ++
Sbjct: 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVC 260
Query: 460 XXKDTI---TGETLCDADHPI--LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQE 514
KD G+TL A +P L P + + P + D + + L KL+
Sbjct: 261 AIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN 320
Query: 515 DPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR-ESIS 568
D S + + E + + G +G LH+EII +RL+RE+ ++ AP V Y E+ S
Sbjct: 321 DASLFY--EPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTS 378
Query: 569 KVSEVKYV 576
+ EV YV
Sbjct: 379 R--EVIYV 384
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
+K+ RN I+AHID GK+T ++R++ G + + +D M+ E+ERGITI +
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICG---GLSDREMEAQVLDSMDLERERGITIKAQ 57
Query: 147 ATTTYWN-----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR 201
+ T + +++N IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 202 QADKYGVPRICFVNKMD 218
A + + + +NK+D
Sbjct: 118 TAMEMDLEVVPVLNKID 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXX 459
D ++G ++ +R+ GTL G V + G+ RL + ++
Sbjct: 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVC 260
Query: 460 XXKDTI---TGETLCDADHPI--LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQE 514
KD G+TL A +P L P + + P + D + + L KL+
Sbjct: 261 AIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN 320
Query: 515 DPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR-ESIS 568
D S + + E + + G +G LH+EII +RL+RE+ ++ AP V Y E+ S
Sbjct: 321 DASLFY--EPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTS 378
Query: 569 KVSEVKYV 576
+ EV YV
Sbjct: 379 R--EVIYV 384
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 744
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 58
Query: 745 KGRASYIM 752
+GR S++M
Sbjct: 59 QGRGSFVM 66
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 86 PLKDYRNI--GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI 143
P D++NI GI HID GKTT + +VL T+ D + + Q+RGITI
Sbjct: 13 PHMDFKNINLGIFGHIDHGKTTLS-KVLTEIA----------STSAHDKLPESQKRGITI 61
Query: 144 TSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA 203
+ +RI ++D PGH D V A ++D A+ + D+ G + Q+
Sbjct: 62 DIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLIL 121
Query: 204 DKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 235
D + +P I + K D G + +MI+ ++
Sbjct: 122 DHFNIPIIVVITKSDNAGTEEIKRTEMIMKSI 153
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + F T EV + +D +E+ RGITI
Sbjct: 6 IRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKD-YGDIDKAPEERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D PGH D+ + +DGAI + + G PQ+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GVP I F+NK+D
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + F T EV + +D +E+ RGITI
Sbjct: 6 IRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKD-YGDIDKAPEERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D PGH D+ + +DGAI + + G PQ+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GVP I F+NK+D
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + + T EV + +D +E+ RGITI
Sbjct: 6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKD-YGDIDKAPEERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D PGH D+ + +DGAI + + G PQ+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GVP I F+NK+D
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + T EV + +D +E+ RGITI +A
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKD-YGDIDKAPEERARGITINTAH 67
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 208 VPRI-CFVNKMD 218
VP I F+NK+D
Sbjct: 128 VPYIVVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + + EV + +D +E+ RGITI
Sbjct: 6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D PGH D+ + +DGAI + + G PQ+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GVP I F+NK+D
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + + EV + +D +E+ RGITI
Sbjct: 6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D PGH D+ + +DGAI + + G PQ+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GVP I F+NK+D
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAH 67
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 208 VPRI-CFVNKMD 218
VP I F+NK+D
Sbjct: 128 VPYIVVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 10 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAH 68
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 69 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 128
Query: 208 VPRI-CFVNKMD 218
VP I F+NK+D
Sbjct: 129 VPYIVVFMNKVD 140
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAH 67
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 208 VPRI-CFVNKMD 218
VP I F+NK+D
Sbjct: 128 VPYIVVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAH 67
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 208 VPRI-CFVNKMD 218
VP I F+NK+D
Sbjct: 128 VPYIVVFMNKVD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
MA E+ +R P + N+G + H+D GKTT T + + Y G +D +
Sbjct: 1 MAKEKFERTKP---HVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPE 55
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
E+ RGITI ++ +D PGH D+ + +DGAI + + G PQ
Sbjct: 56 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 115
Query: 196 SETVWRQADKYGVPR-ICFVNKMD 218
+ + GVP I F+NK D
Sbjct: 116 TREHILLGRQVGVPYIIVFLNKCD 139
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
M+ E+ +R P + N+G + H+D GKTT T + + Y G +D +
Sbjct: 285 MSKEKFERTKP---HVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPE 339
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
E+ RGITI ++ +D PGH D+ + +DGAI + + G PQ
Sbjct: 340 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 399
Query: 196 SETVWRQADKYGVPR-ICFVNKMD 218
+ + GVP I F+NK D
Sbjct: 400 TREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
M+ E+ +R P + N+G + H+D GKTT T + + Y G +D +
Sbjct: 1 MSKEKFERTKP---HVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPE 55
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
E+ RGITI ++ +D PGH D+ + +DGAI + + G PQ
Sbjct: 56 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 115
Query: 196 SETVWRQADKYGVPR-ICFVNKMD 218
+ + GVP I F+NK D
Sbjct: 116 TREHILLGRQVGVPYIIVFLNKCD 139
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
M+ E+ +R P + N+G + H+D GKTT T + + Y G +D +
Sbjct: 285 MSKEKFERTKP---HVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPE 339
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
E+ RGITI ++ +D PGH D+ + +DGAI + + G PQ
Sbjct: 340 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 399
Query: 196 SETVWRQADKYGVPR-ICFVNKMD 218
+ + GVP I F+NK D
Sbjct: 400 TREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + Y G +D +E+ RGITI ++
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTSH 58
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+D PGH D+ + +DGAI + + G PQ+ + G
Sbjct: 59 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 118
Query: 208 VPR-ICFVNKMD 218
VP I F+NK D
Sbjct: 119 VPYIIVFLNKCD 130
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + Y G +D +E+ RGITI ++
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTSH 66
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+D PGH D+ + +DGAI + + G PQ+ + G
Sbjct: 67 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 208 VPR-ICFVNKMD 218
VP I F+NK D
Sbjct: 127 VPYIIVFLNKCD 138
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
+ IM H+D GKTT + + R+ K+ E G GIT A
Sbjct: 11 VTIMGHVDHGKTTLLDAI-----RHSKVTEQEAG-------------GITQHIGAYQVTV 52
Query: 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212
N +I +DTPGH FT R +V D I + + GV PQ+ A VP I
Sbjct: 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIV 112
Query: 213 FVNKMDRLGANFFRT-RDMIVTNL-----GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
+NKMD+ AN R ++++ NL G + +L ++ G+ L++M ++
Sbjct: 113 AINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE---GLDHLLEMILLVS 169
Query: 267 SGEELGA 273
EEL A
Sbjct: 170 EMEELKA 176
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + Y G +D +E+ RGITI ++
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTSH 66
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+D PGH D+ + +DGAI + + G PQ+ + G
Sbjct: 67 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 208 VPR-ICFVNKMD 218
VP I F+NK D
Sbjct: 127 VPYIIVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + Y G +D +E+ RGITI ++
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTSH 66
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+D PGH D+ + +DGAI + + G PQ+ + G
Sbjct: 67 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 208 VPR-ICFVNKMD 218
VP I F+NK D
Sbjct: 127 VPYIIVFLNKCD 138
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 21/165 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---------IGEVHEGTATMDW----ME 134
K + N+ ++ H+D+GK+TTT +++ G K E+ +G+ W ++
Sbjct: 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 64
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFD 187
E+ERGITI A K+++ +ID PGH DF T + + A+ ++ G + F+
Sbjct: 65 AERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 188 SVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231
+ + Q+ A GV + I VNKMD + + R ++++
Sbjct: 125 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV 169
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 7/145 (4%)
Query: 77 AAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERV--LFYTGRNYKIGEVHEGTATMDWME 134
A E K + K + N+G + H+D GKTT T + + G K + E +D
Sbjct: 1 AVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE----IDNAP 56
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP 194
+E+ RGITI +A D PGH D+ LDG I + + G P
Sbjct: 57 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP 116
Query: 195 QSETVWRQADKYGVPR-ICFVNKMD 218
Q+ A + GV + +VNK D
Sbjct: 117 QTREHLLLARQIGVEHVVVYVNKAD 141
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERV--LFYTGRNYKIGEVHEGTATMDWMEQEQERGITITS 145
K + N+G + H+D GKTT T + + G K + E +D +E+ RGITI +
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE----IDNAPEERARGITINA 56
Query: 146 AATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
A D PGH D+ + LDG I + + G PQ+ A +
Sbjct: 57 AHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ 116
Query: 206 YGVPR-ICFVNKMD 218
GV + +VNK D
Sbjct: 117 IGVEHVVVYVNKAD 130
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-------------NYKIGEVHEGTATMDWME 134
K + N+ ++ H+D GK+T +L+ G + E + +D M+
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL-------FD 187
+E+ERGITI K+ IID PGH DF + D AI + F+
Sbjct: 67 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 188 SVAGVEPQSETVWRQADKYGVPRICF-VNKMDRLGANFFRTRDMIVTNL 235
+ E Q+ A G+ +I VNKMD N+ + R V ++
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSV 175
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-------------NYKIGEVHEGTATMDWME 134
K + N+ ++ H+D GK+T +L+ G + E + +D M+
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL-------FD 187
+E+ERGITI K+ IID PGH DF + D AI + F+
Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 188 SVAGVEPQSETVWRQADKYGVPRICF-VNKMDRLGANFFRTRDMIVTNL 235
+ E Q+ A G+ +I VNKMD N+ + R V ++
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSV 172
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
I K + N+G + H+D GKTT T + + + EV + +D +E+ RGITI
Sbjct: 6 IRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKD-YGDIDKAREERARGITIN 64
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
+A K + +D GH D+ + +DGAI + + G Q+ A
Sbjct: 65 TAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLAR 124
Query: 205 KYGVPRI-CFVNKMD 218
+ GV I F+NK+D
Sbjct: 125 QVGVRYIVVFMNKVD 139
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + Y G A RGITI ++
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG------GAA----------RGITINTSH 52
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+D PGH D+ + +DGAI + + G PQ+ + G
Sbjct: 53 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 112
Query: 208 VPR-ICFVNKMD 218
VP I F+NK D
Sbjct: 113 VPYIIVFLNKCD 124
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 21/152 (13%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG------------RNYKIGEVHEGTA-TMDWME 134
K + N+ ++ H+D GK+T R+L G K+G+ E A +D ++
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG--- 191
+E+ERG+TI K+ IID PGH DF + D AI + + G
Sbjct: 64 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 192 ----VEPQSETVWRQADKYGVPR-ICFVNKMD 218
VE Q+ A G+ + I VNKMD
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 25/149 (16%)
Query: 95 IMAHIDAGKTTTTERVLFYTG--RNYKIGEVHEGTATM-----------DWMEQEQERGI 141
++ H+DAGK+T R+L+ ++ ++ + TM D +E+ERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 142 TITSAATTTYWNKHRIN--IIDTPGHVDFT-------LEVERALRVLDGAICLFDSVAGV 192
T++ T++++ HR N I+D PGH DF + + A+ +D + F+S +
Sbjct: 232 TVS--ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 289
Query: 193 EPQSETVWRQADKYGVPR-ICFVNKMDRL 220
+ Q++ A G+ I +NKMD +
Sbjct: 290 DGQTKEHMLLASSLGIHNLIIAMNKMDNV 318
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 25/149 (16%)
Query: 95 IMAHIDAGKTTTTERVLFYTG--RNYKIGEVHEGTATM-----------DWMEQEQERGI 141
++ H+DAGK+T R+L+ ++ ++ + TM D +E+ERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 142 TITSAATTTYWNKHRIN--IIDTPGHVDFT-------LEVERALRVLDGAICLFDSVAGV 192
T+ + T++++ HR N I+D PGH DF + + A+ +D + F+S +
Sbjct: 98 TV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 155
Query: 193 EPQSETVWRQADKYGVPR-ICFVNKMDRL 220
+ Q++ A G+ I +NKMD +
Sbjct: 156 DGQTKEHMLLASSLGIHNLIIAMNKMDNV 184
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 95 IMAHIDAGKTTTTERVLFYTG--RNYKIGEVH-------EGTATMDWM----EQEQERGI 141
+ H+D+GK+T R++F G + + ++H +G+ + W+ E+E+ RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
T+ A+TT +K I D PGH DF + D A+ + DS
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 95 IMAHIDAGKTTTTERVLFYTG-------RNYKIGEVHEGTATM------DWMEQEQERGI 141
++ H+DAGK+T R+L+ R + G ++ D +E+ERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 142 TITSAATTTYWNKHRIN--IIDTPGHVDFTLEVERALRVLDGAICLFD 187
T+ + T++++ HR N I+D PGH DF + D AI D
Sbjct: 98 TV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVD 143
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 130 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189
+D ++ E+E+GITI A K + I DTPGH +T D AI L D+
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 190 AGVEPQSETVWRQADKYGVPRICF-VNKMDRLG 221
GV+ Q+ A G+ I +NK D G
Sbjct: 139 YGVQTQTRRHSYIASLLGIKHIVVAINKXDLNG 171
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
+ IM H+D GKTT +++ R ++ + G T Q G + S +
Sbjct: 7 VTIMGHVDHGKTTLLDKL-----RKTQVAAMEAGGIT-------QHIGAFLVSLPSG--- 51
Query: 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212
+I +DTPGH F+ R +V D I + + GV Q+ + A VP +
Sbjct: 52 --EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVL 109
Query: 213 FVNKMDRLGAN 223
+NK D+ A+
Sbjct: 110 AINKCDKAEAD 120
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT-----ITSAA 147
+ ++ H+D GKTT + + R + G T Q G T +
Sbjct: 8 VSVLGHVDHGKTTLLDHI-----RGSAVASREAGGIT-------QHIGATEIPXDVIEGI 55
Query: 148 TTTYWNKHRIN-------IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW 200
+ K I IDTPGH FT +R + D AI + D G +PQ++
Sbjct: 56 CGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115
Query: 201 RQADKYGVPRICFVNKMDRL 220
Y P + NK+DR+
Sbjct: 116 NILRXYRTPFVVAANKIDRI 135
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 14/135 (10%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
+ ++ H+D GKTT + + R + G T E + + +
Sbjct: 8 VSVLGHVDHGKTTLLDHI-----RGSAVASREAGGITQHI--GATEIPMDVIEGICGDFL 60
Query: 153 NKHRIN-------IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
K I IDTPGH FT +R + D AI + D G +PQ++
Sbjct: 61 KKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 120
Query: 206 YGVPRICFVNKMDRL 220
Y P + NK+DR+
Sbjct: 121 YRTPFVVAANKIDRI 135
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---------IGEVHEGTATMDWM--- 133
P K++ N+ + H+DAGK+T ++++ TG K E + T + W
Sbjct: 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 72
Query: 134 -EQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV 192
++E+++G T+ K I+D PGH F + D A+ + + G
Sbjct: 73 NQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG- 131
Query: 193 EPQSETVWRQ----------ADKYGVPR-ICFVNKMDRLGANFFRTR 228
+ ET + + A GV I +NKMD N+ R
Sbjct: 132 --EFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 176
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 64/303 (21%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
+ IM H+D GKT+ E + R+ K+ G GIT A
Sbjct: 7 VTIMGHVDHGKTSLLEYI-----RSTKVASGEAG-------------GITQHIGAYHVET 48
Query: 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212
I +DTPGH FT R + D + + + GV PQ+ + A VP +
Sbjct: 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVV 108
Query: 213 FVNKMDRLGANFFRTRD------MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VNK+D+ A+ R ++ ++ G + V + A ++D + ++A +
Sbjct: 109 AVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVL 168
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
++ A + MA +ES+L+ T+ L+R
Sbjct: 169 ------------ELKAVRKGMAS--------------GAVIESFLDKGRGPVATV--LVR 200
Query: 327 KGTIAGSFVPVLCG------SAFKNKGVQPLLDAVVDYLPS-PLDLPAMKGTDPENPEAT 379
+GT+ + VLCG A +N+ Q +L+A PS P+++ + G E T
Sbjct: 201 EGTLHKGDI-VLCGFEYGRVRAMRNELGQEVLEAG----PSIPVEILGLSGVPAAGDEVT 255
Query: 380 LER 382
+ R
Sbjct: 256 VVR 258
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 199
GITI ++ +D PGH D+ + +DGAI + + G PQ+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 200 WRQADKYGVPR-ICFVNKMD 218
+ GVP I F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 199
GITI ++ +D PGH D+ + +DGAI + + G PQ+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 200 WRQADKYGVPR-ICFVNKMD 218
+ GVP I F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR---------NYKIGEVHEGTATMDW----ME 134
K++ NI + H+DAGK+T +LF TG + E + + + W
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGH 165
+E+E+G T+ R +++D PGH
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGH 131
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 92 NIGIMAHIDAGKTTTTERVL-FYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150
NIG++ H+D GKTT + + +T + E + G ++ E +T S +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESC---KKPEAYVTEPSCKSCG 66
Query: 151 YWNK----HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP 194
++ RI+ ID PGH + ++DGAI + VA EP
Sbjct: 67 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILV---VAANEP 111
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 42/153 (27%)
Query: 92 NIGIMAHIDAGKTTTTERVL-FYTGRNYKIGEVHEGTATMDWMEQEQERGITI------- 143
NIG++ H+D GKT+ T+ + +T R+ +E RGI+I
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGVWTDRH----------------SEELRRGISIRLGYADC 53
Query: 144 ---TSAATTTYWNK-------------HRINIIDTPGHVDFTLEVERALRVLDGAICLFD 187
TY K R++ +D+PGH + ++DGAI +
Sbjct: 54 EIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIA 113
Query: 188 SVAGV-EPQSETVWRQADKYGVPRICFV-NKMD 218
+ +PQ++ + G+ +I V NK+D
Sbjct: 114 ANEPCPQPQTKEHLMALEILGIDKIIIVQNKID 146
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
E + E IK+ + KGTIA + P++ SA + LL A+ D++P+P
Sbjct: 154 EENYEQIKEFV-KGTIAEN-APIIPISAHHEANIDVLLKAIQDFIPTP 199
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT GH +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 212 CFVNKMD 218
NK D
Sbjct: 131 LVGNKCD 137
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 41/126 (32%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT------- 144
NIG++ H+D GKTT T+ + TG D +E RGITI
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 57
Query: 145 ----------SAATTTYWNKH------RINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
S + + H R++ ID+PGH + ++DGAI +
Sbjct: 58 IRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILV--- 114
Query: 189 VAGVEP 194
+A EP
Sbjct: 115 IAANEP 120
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 41/126 (32%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT------- 144
NIG++ H+D GKTT T+ + TG D +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 56
Query: 145 ----------SAATTTYWNKH------RINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
S + + H R++ ID PGH + ++DGAI +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV--- 113
Query: 189 VAGVEP 194
+A EP
Sbjct: 114 IAANEP 119
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 41/126 (32%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT------- 144
NIG++ H+D GKTT T+ + TG D +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 56
Query: 145 ----------SAATTTYWNKH------RINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
S + + H R++ ID PGH + ++DGAI +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV--- 113
Query: 189 VAGVEP 194
+A EP
Sbjct: 114 IAANEP 119
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT GH +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S A + E + R D VP +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 212 CFVNKMD 218
NK D
Sbjct: 131 LVGNKCD 137
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 92 NIGIMAHIDAGKTTTTERVL-FYTGRN----YKIGEVHEGTATMDWMEQEQERGITITSA 146
NIG++ H+D GKTT + + +T ++ K+G + ++ E +T S
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCE-SCKKPEAYVTEPSC 68
Query: 147 ATTTYWNK----HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP 194
+ ++ RI+ ID PGH + ++DGAI + VA EP
Sbjct: 69 KSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILV---VAANEP 117
>pdb|2BCW|C Chain C, Coordinates Of The N-Terminal Domain Of Ribosomal Protein
L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A
Portion Of The G' Domain Of Elongation Factor G, As
Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf-
GGdpFusidic Acid Complex
Length = 58
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 280 IPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVP 336
IP A+EY +++E + D+ M YLEG EP EE + IRKGTI P
Sbjct: 2 IPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP 58
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 38/118 (32%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT------- 144
NIG + H+D GKTT T+ + TG D +E RGITI
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 56
Query: 145 ----------SAATTTYWNKH------RINIIDTPGHVDFTLEVERALRVLDGAICLF 186
S + + H R++ ID PGH + DGAI +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVI 114
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLG 221
NK D G
Sbjct: 113 LVGNKCDLAG 122
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 671 REGMRKAGPKMLEPIMKVEVVT----PEEHLGDVIGDLNSRRGQINS 713
REG+ P ++ PI ++E + P ++GDV+G +SR+ NS
Sbjct: 206 REGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNS 252
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 212 CFVNKMD 218
NK D
Sbjct: 120 LVGNKCD 126
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 119 LVGNKCD-LAARTVESR 134
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 212 CFVNKMD 218
NK D
Sbjct: 114 LVGNKSD 120
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 212 CFVNKMD 218
NK D
Sbjct: 114 LVGNKSD 120
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 156 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 210
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126
Query: 211 ICFVNKMD 218
+ NK D
Sbjct: 127 LLVGNKSD 134
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 156 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 210
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 55 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 114
Query: 211 ICFVNKMD 218
+ NK D
Sbjct: 115 LLVGNKSD 122
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 212 CFVNKMD 218
NK D
Sbjct: 114 LVGNKSD 120
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMD 218
NK D
Sbjct: 113 LVGNKCD 119
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKSD-LAARTVESR 128
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 156 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 210
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112
Query: 211 ICFVNKMD 218
+ NK D
Sbjct: 113 LLVGNKSD 120
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKSD-LAARTVESR 128
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 156 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 210
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122
Query: 211 ICFVNKMD 218
+ NK D
Sbjct: 123 LLVGNKSD 130
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 212 CFVNKMD 218
NK D
Sbjct: 114 LVGNKCD 120
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304
P+ +++ K D V MKA+ + G+ G +P ++ +A Y +++ + D
Sbjct: 96 PIQVDNSVKNQFDDVAMKALTYGGKLYG-------LPKAIESVALIYNKKLMGQVPATYD 148
Query: 305 EAMESYLEGNEPDEE 319
E + N+PDE+
Sbjct: 149 ELFQYAKANNKPDEQ 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ + +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
N+ D L A +R
Sbjct: 113 LVGNRCD-LAARTVESR 128
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 157 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 211
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 212 CFVNKMDRLGANFFRTR 228
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,022,118
Number of Sequences: 62578
Number of extensions: 942996
Number of successful extensions: 2761
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2511
Number of HSP's gapped (non-prelim): 169
length of query: 777
length of database: 14,973,337
effective HSP length: 106
effective length of query: 671
effective length of database: 8,340,069
effective search space: 5596186299
effective search space used: 5596186299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)