Query 004038
Match_columns 777
No_of_seqs 456 out of 3029
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 7E-148 2E-152 1196.8 53.3 684 83-771 32-720 (721)
2 COG0480 FusA Translation elong 100.0 6E-145 1E-149 1251.1 75.6 686 87-775 7-694 (697)
3 PRK00007 elongation factor G; 100.0 4E-134 1E-138 1190.9 80.4 689 84-773 4-692 (693)
4 PRK12739 elongation factor G; 100.0 3E-133 6E-138 1185.1 79.1 687 85-773 3-689 (691)
5 TIGR00484 EF-G translation elo 100.0 5E-132 1E-136 1175.6 80.7 686 83-772 3-688 (689)
6 PRK13351 elongation factor G; 100.0 2E-128 4E-133 1147.8 81.6 683 86-770 4-686 (687)
7 PRK12740 elongation factor G; 100.0 2E-121 4E-126 1086.8 78.4 668 96-770 1-668 (668)
8 PLN00116 translation elongatio 100.0 4E-117 9E-122 1062.4 60.9 665 86-767 15-812 (843)
9 PTZ00416 elongation factor 2; 100.0 3E-116 6E-121 1052.8 60.5 658 87-766 16-804 (836)
10 TIGR00490 aEF-2 translation el 100.0 1E-113 3E-118 1019.1 61.3 633 86-774 15-713 (720)
11 PRK07560 elongation factor EF- 100.0 4E-112 9E-117 1009.1 59.0 631 86-774 16-715 (731)
12 KOG0464 Elongation factor G [T 100.0 4E-112 9E-117 877.2 30.7 674 86-772 33-749 (753)
13 KOG0469 Elongation factor 2 [T 100.0 3E-101 6E-106 811.9 27.1 660 86-766 15-810 (842)
14 TIGR01394 TypA_BipA GTP-bindin 100.0 9.1E-84 2E-88 742.4 51.7 455 90-766 1-477 (594)
15 KOG0468 U5 snRNP-specific prot 100.0 1.6E-84 3.4E-89 704.3 36.2 656 86-769 124-915 (971)
16 PRK10218 GTP-binding protein; 100.0 7.3E-82 1.6E-86 725.0 53.8 455 88-764 3-480 (607)
17 PRK05433 GTP-binding protein L 100.0 1.3E-81 2.7E-86 727.5 53.0 461 87-760 4-481 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 1.1E-80 2.3E-85 719.1 54.3 460 88-759 1-477 (595)
19 PRK00741 prfC peptide chain re 100.0 3.2E-79 7E-84 696.4 50.3 448 88-569 8-473 (526)
20 KOG0467 Translation elongation 100.0 6.1E-78 1.3E-82 665.6 28.7 660 86-764 5-832 (887)
21 TIGR00503 prfC peptide chain r 100.0 2.8E-75 6E-80 664.3 49.7 447 87-565 8-470 (527)
22 COG1217 TypA Predicted membran 100.0 6.6E-71 1.4E-75 581.5 39.2 452 88-764 3-479 (603)
23 KOG0462 Elongation factor-type 100.0 6.4E-71 1.4E-75 592.6 36.9 468 83-759 53-533 (650)
24 COG0481 LepA Membrane GTPase L 100.0 1.8E-69 3.9E-74 572.4 38.2 465 85-761 4-485 (603)
25 COG4108 PrfC Peptide chain rel 100.0 6.1E-62 1.3E-66 511.7 32.0 448 88-564 10-470 (528)
26 cd01886 EF-G Elongation factor 100.0 3.3E-51 7E-56 431.5 33.1 270 92-362 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 9.2E-47 2E-51 397.4 31.0 263 89-362 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 8.8E-45 1.9E-49 384.9 32.1 268 92-362 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 7.9E-44 1.7E-48 369.2 28.1 237 92-362 1-237 (237)
30 PRK05306 infB translation init 100.0 2E-35 4.4E-40 347.2 33.6 312 87-538 287-628 (787)
31 CHL00071 tufA elongation facto 100.0 2.5E-35 5.5E-40 329.7 31.9 274 87-474 9-307 (409)
32 PRK12736 elongation factor Tu; 100.0 2.5E-35 5.3E-40 328.3 31.1 273 87-474 9-297 (394)
33 PLN03126 Elongation factor Tu; 100.0 1.1E-34 2.5E-39 327.0 34.0 273 86-474 77-376 (478)
34 PTZ00141 elongation factor 1- 100.0 7.2E-35 1.6E-39 327.8 29.0 272 88-474 5-318 (446)
35 PLN00043 elongation factor 1-a 100.0 1E-34 2.2E-39 326.4 27.3 272 88-474 5-318 (447)
36 TIGR00485 EF-Tu translation el 100.0 3.2E-34 7E-39 319.8 31.0 273 87-474 9-297 (394)
37 PRK12735 elongation factor Tu; 100.0 9.5E-34 2.1E-38 315.8 30.7 273 87-474 9-299 (396)
38 PRK00049 elongation factor Tu; 100.0 1.7E-33 3.7E-38 313.5 31.0 272 87-474 9-299 (396)
39 PLN03127 Elongation factor Tu; 100.0 2.6E-33 5.6E-38 314.6 31.2 276 84-474 55-350 (447)
40 PRK12317 elongation factor 1-a 100.0 1.6E-33 3.4E-38 317.9 29.3 273 88-475 4-311 (425)
41 TIGR00487 IF-2 translation ini 100.0 7.9E-33 1.7E-37 318.9 35.1 311 88-538 85-426 (587)
42 COG5256 TEF1 Translation elong 100.0 2.8E-33 6E-38 296.8 27.8 273 88-478 5-320 (428)
43 TIGR02034 CysN sulfate adenyly 100.0 9.6E-33 2.1E-37 308.4 27.4 271 91-475 1-301 (406)
44 TIGR00483 EF-1_alpha translati 100.0 2.2E-32 4.7E-37 308.5 29.0 274 87-475 4-313 (426)
45 PRK05124 cysN sulfate adenylyl 100.0 5.3E-32 1.1E-36 306.9 28.8 277 87-476 24-330 (474)
46 CHL00189 infB translation init 100.0 2.4E-31 5.1E-36 310.1 30.9 312 88-539 242-584 (742)
47 COG0050 TufB GTPases - transla 100.0 5.4E-32 1.2E-36 272.2 21.1 274 87-475 9-298 (394)
48 KOG0460 Mitochondrial translat 100.0 7.2E-33 1.6E-37 283.4 14.5 274 87-476 51-343 (449)
49 PTZ00327 eukaryotic translatio 100.0 4.3E-31 9.4E-36 295.9 27.2 258 87-475 31-352 (460)
50 PRK10512 selenocysteinyl-tRNA- 100.0 1.9E-30 4.2E-35 301.4 29.0 251 92-474 2-260 (614)
51 PRK04000 translation initiatio 100.0 1.1E-29 2.3E-34 283.9 29.3 259 88-477 7-321 (411)
52 PRK05506 bifunctional sulfate 100.0 1.4E-29 3E-34 298.4 29.2 276 87-476 21-326 (632)
53 PF00009 GTP_EFTU: Elongation 100.0 1.9E-30 4.1E-35 260.6 17.0 145 88-232 1-147 (188)
54 TIGR03680 eif2g_arch translati 100.0 5.3E-29 1.1E-33 278.6 29.6 257 88-475 2-314 (406)
55 TIGR00475 selB selenocysteine- 100.0 8.6E-29 1.9E-33 287.0 29.4 253 92-473 2-260 (581)
56 COG3276 SelB Selenocysteine-sp 100.0 1E-27 2.3E-32 256.3 21.2 249 92-474 2-256 (447)
57 COG0532 InfB Translation initi 100.0 7.5E-27 1.6E-31 256.2 27.2 253 88-471 3-259 (509)
58 KOG1145 Mitochondrial translat 100.0 3.8E-27 8.2E-32 254.7 22.6 254 87-471 150-405 (683)
59 cd01885 EF2 EF2 (for archaea a 100.0 2.6E-27 5.7E-32 242.4 20.1 129 91-221 1-139 (222)
60 PRK04004 translation initiatio 100.0 2.4E-26 5.3E-31 265.9 29.2 304 88-471 4-326 (586)
61 COG5257 GCD11 Translation init 100.0 2.2E-26 4.7E-31 234.7 24.5 308 88-536 8-362 (415)
62 COG5258 GTPBP1 GTPase [General 99.9 4.4E-26 9.4E-31 236.9 23.0 286 87-476 114-439 (527)
63 KOG0458 Elongation factor 1 al 99.9 3E-26 6.5E-31 251.1 22.9 283 86-472 173-488 (603)
64 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.7E-26 5.9E-31 231.0 20.2 129 90-221 2-132 (195)
65 TIGR00491 aIF-2 translation in 99.9 2.1E-24 4.5E-29 248.7 31.6 288 89-471 3-324 (590)
66 COG2895 CysN GTPases - Sulfate 99.9 1.5E-25 3.2E-30 231.7 18.7 289 88-500 4-331 (431)
67 PF03764 EFG_IV: Elongation fa 99.9 1.7E-25 3.8E-30 207.8 13.8 119 559-678 1-120 (120)
68 cd01684 Tet_like_IV EF-G_domai 99.9 9.9E-25 2.1E-29 200.3 14.7 115 561-678 1-115 (115)
69 cd01883 EF1_alpha Eukaryotic e 99.9 1.7E-24 3.6E-29 222.8 14.9 130 92-221 1-151 (219)
70 cd01890 LepA LepA subfamily. 99.9 1.9E-23 4E-28 207.5 21.1 130 91-223 1-135 (179)
71 KOG0461 Selenocysteine-specifi 99.9 8.7E-24 1.9E-28 216.8 18.9 248 90-459 7-268 (522)
72 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.4E-24 7.3E-29 218.7 15.1 131 92-222 1-145 (208)
73 cd01891 TypA_BipA TypA (tyrosi 99.9 4.4E-23 9.5E-28 208.2 20.5 143 89-233 1-143 (194)
74 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 2.3E-23 5E-28 192.1 13.0 116 563-678 1-116 (116)
75 cd04167 Snu114p Snu114p subfam 99.9 2.1E-22 4.5E-27 206.4 19.6 130 91-220 1-136 (213)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 1.5E-22 3.4E-27 205.7 17.1 116 91-221 1-151 (203)
77 cd01680 EFG_like_IV Elongation 99.9 8.6E-23 1.9E-27 188.5 13.3 116 563-678 1-116 (116)
78 cd01889 SelB_euk SelB subfamil 99.9 4.7E-22 1E-26 200.4 18.0 120 91-221 1-134 (192)
79 PRK14845 translation initiatio 99.9 4E-21 8.6E-26 231.0 28.9 317 103-511 474-832 (1049)
80 KOG0459 Polypeptide release fa 99.9 8.2E-23 1.8E-27 214.2 12.5 293 84-478 73-394 (501)
81 cd01693 mtEFG2_like_IV mtEF-G2 99.9 3.2E-22 6.9E-27 185.7 11.9 116 561-678 1-120 (120)
82 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.8E-21 6.1E-26 198.8 17.5 142 92-237 1-169 (224)
83 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3.1E-22 6.6E-27 171.4 8.1 79 683-761 1-80 (80)
84 cd00881 GTP_translation_factor 99.9 2.3E-20 4.9E-25 186.3 20.9 143 92-236 1-144 (189)
85 PF00679 EFG_C: Elongation fac 99.9 1.4E-21 3.1E-26 171.1 9.8 89 680-768 1-89 (89)
86 cd01683 EF2_IV_snRNP EF-2_doma 99.9 4E-21 8.7E-26 189.3 12.6 127 558-688 1-178 (178)
87 smart00838 EFG_C Elongation fa 99.8 1.7E-21 3.7E-26 169.2 7.5 83 681-764 1-83 (85)
88 COG1160 Predicted GTPases [Gen 99.8 3.3E-20 7.3E-25 201.0 18.9 114 91-221 4-126 (444)
89 PF14492 EFG_II: Elongation Fa 99.8 5.9E-21 1.3E-25 161.1 8.5 75 484-558 1-75 (75)
90 cd04171 SelB SelB subfamily. 99.8 1.6E-19 3.6E-24 175.9 18.0 116 92-222 2-119 (164)
91 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.1E-20 4.6E-25 159.5 8.3 78 683-761 1-78 (78)
92 cd03711 Tet_C Tet_C: C-terminu 99.8 4.1E-20 9E-25 157.8 8.3 78 683-761 1-78 (78)
93 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 5.9E-20 1.3E-24 157.0 7.7 78 683-761 1-78 (78)
94 cd01681 aeEF2_snRNP_like_IV Th 99.8 2.4E-19 5.1E-24 177.8 12.7 126 558-687 1-177 (177)
95 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.2E-19 2.5E-24 155.3 9.0 78 683-760 1-78 (79)
96 cd04096 eEF2_snRNP_like_C eEF2 99.8 8E-20 1.7E-24 156.9 7.8 79 683-761 1-80 (80)
97 PRK09554 feoB ferrous iron tra 99.8 6.2E-19 1.3E-23 209.5 17.7 240 90-359 3-263 (772)
98 PF02421 FeoB_N: Ferrous iron 99.8 7.6E-19 1.6E-23 168.7 14.7 110 92-221 2-119 (156)
99 COG1159 Era GTPase [General fu 99.8 1.7E-18 3.7E-23 178.4 17.3 117 90-223 6-130 (298)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.1E-18 6.6E-23 167.8 18.6 115 91-223 1-118 (168)
101 cd03709 lepA_C lepA_C: This fa 99.8 4.5E-19 9.8E-24 151.9 8.6 78 683-760 1-79 (80)
102 cd01514 Elongation_Factor_C El 99.8 4.1E-19 8.9E-24 152.2 8.2 79 683-761 1-79 (79)
103 KOG1144 Translation initiation 99.8 4.3E-18 9.3E-23 189.3 17.6 239 89-427 474-737 (1064)
104 COG1160 Predicted GTPases [Gen 99.8 4.7E-18 1E-22 184.4 17.1 117 89-222 177-304 (444)
105 KOG1143 Predicted translation 99.8 7.2E-18 1.6E-22 175.0 16.4 283 91-473 168-490 (591)
106 PRK15494 era GTPase Era; Provi 99.8 2E-17 4.4E-22 180.7 19.0 117 88-221 50-174 (339)
107 KOG0463 GTP-binding protein GP 99.8 9.3E-18 2E-22 174.1 14.7 281 91-475 134-457 (641)
108 TIGR00436 era GTP-binding prot 99.8 2.7E-17 5.9E-22 174.7 18.4 111 92-220 2-120 (270)
109 cd03690 Tet_II Tet_II: This su 99.7 7.1E-18 1.5E-22 146.3 10.7 85 387-472 1-85 (85)
110 cd01894 EngA1 EngA1 subfamily. 99.7 3.5E-17 7.5E-22 158.1 16.4 112 94-222 1-120 (157)
111 PRK00093 GTP-binding protein D 99.7 6.6E-17 1.4E-21 183.6 19.7 117 88-221 171-298 (435)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.7 4.8E-17 1E-21 159.4 15.7 117 92-222 1-122 (167)
113 TIGR03594 GTPase_EngA ribosome 99.7 5.5E-17 1.2E-21 184.0 18.2 116 88-220 170-296 (429)
114 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-16 3.1E-21 156.1 18.5 116 90-222 2-128 (174)
115 COG0218 Predicted GTPase [Gene 99.7 1.2E-16 2.7E-21 156.5 17.3 137 82-237 16-166 (200)
116 KOG0466 Translation initiation 99.7 7.9E-18 1.7E-22 170.7 9.1 245 86-458 34-336 (466)
117 PRK03003 GTP-binding protein D 99.7 1.7E-16 3.6E-21 181.5 18.6 117 88-221 36-160 (472)
118 cd04092 mtEFG2_II_like mtEFG2_ 99.7 4.7E-17 1E-21 140.7 10.0 82 390-471 1-82 (83)
119 PRK03003 GTP-binding protein D 99.7 2.1E-16 4.6E-21 180.7 18.2 117 88-221 209-336 (472)
120 TIGR03594 GTPase_EngA ribosome 99.7 1.9E-16 4.1E-21 179.6 16.7 113 92-221 1-121 (429)
121 cd01864 Rab19 Rab19 subfamily. 99.7 6E-16 1.3E-20 151.6 17.9 115 89-221 2-122 (165)
122 PRK00089 era GTPase Era; Revie 99.7 4.6E-16 1E-20 167.3 18.6 114 90-220 5-126 (292)
123 cd04154 Arl2 Arl2 subfamily. 99.7 4.3E-16 9.4E-21 154.0 16.7 114 88-222 12-130 (173)
124 cd04157 Arl6 Arl6 subfamily. 99.7 4.8E-16 1E-20 151.3 16.8 112 92-222 1-119 (162)
125 cd01897 NOG NOG1 is a nucleola 99.7 6.7E-16 1.4E-20 151.4 17.0 113 91-221 1-127 (168)
126 cd01898 Obg Obg subfamily. Th 99.7 5.6E-16 1.2E-20 152.2 16.4 112 92-221 2-128 (170)
127 cd03689 RF3_II RF3_II: this su 99.7 1.1E-16 2.4E-21 138.6 9.9 81 392-472 1-84 (85)
128 cd04151 Arl1 Arl1 subfamily. 99.7 5.4E-16 1.2E-20 150.9 15.9 110 92-222 1-115 (158)
129 PRK09518 bifunctional cytidyla 99.7 8.4E-16 1.8E-20 183.8 19.4 120 85-221 270-397 (712)
130 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 2E-16 4.4E-21 136.8 10.0 83 390-472 1-83 (83)
131 PRK09518 bifunctional cytidyla 99.7 6.1E-16 1.3E-20 185.0 17.2 117 88-221 448-575 (712)
132 cd01879 FeoB Ferrous iron tran 99.7 6.2E-16 1.4E-20 149.7 14.1 108 95-222 1-116 (158)
133 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.7E-16 2.1E-20 148.8 15.4 110 92-222 1-115 (158)
134 cd04124 RabL2 RabL2 subfamily. 99.7 1.3E-15 2.9E-20 148.7 16.3 113 92-220 2-117 (161)
135 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.9E-15 4E-20 149.8 17.3 112 89-221 14-130 (174)
136 PRK04213 GTP-binding protein; 99.7 1.7E-15 3.7E-20 153.5 17.4 114 88-223 7-146 (201)
137 cd04091 mtEFG1_II_like mtEFG1_ 99.7 3.4E-16 7.3E-21 134.7 10.2 81 390-472 1-81 (81)
138 PRK15467 ethanolamine utilizat 99.7 8.2E-16 1.8E-20 150.0 14.0 101 91-222 2-106 (158)
139 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3E-15 6.5E-20 146.0 17.5 112 91-221 3-121 (164)
140 cd04163 Era Era subfamily. Er 99.7 5.4E-15 1.2E-19 143.5 18.7 115 90-221 3-125 (168)
141 KOG1423 Ras-like GTPase ERA [C 99.7 1.6E-15 3.4E-20 155.1 15.1 119 86-221 68-199 (379)
142 cd04149 Arf6 Arf6 subfamily. 99.7 2.6E-15 5.7E-20 147.9 16.4 111 90-221 9-124 (168)
143 cd00879 Sar1 Sar1 subfamily. 99.7 2.2E-15 4.7E-20 151.3 16.1 113 88-221 17-134 (190)
144 TIGR03598 GTPase_YsxC ribosome 99.6 2.2E-15 4.8E-20 150.0 15.4 120 83-221 11-143 (179)
145 PRK00093 GTP-binding protein D 99.6 2.6E-15 5.6E-20 170.6 17.9 113 91-220 2-122 (435)
146 cd04113 Rab4 Rab4 subfamily. 99.6 3.3E-15 7.3E-20 145.5 16.0 114 92-221 2-119 (161)
147 smart00177 ARF ARF-like small 99.6 5.7E-15 1.2E-19 146.5 17.6 112 90-222 13-129 (175)
148 smart00178 SAR Sar1p-like memb 99.6 3.7E-15 8.1E-20 149.1 16.5 113 88-221 15-132 (184)
149 cd04150 Arf1_5_like Arf1-Arf5- 99.6 4.3E-15 9.3E-20 145.0 16.3 109 92-221 2-115 (159)
150 cd04114 Rab30 Rab30 subfamily. 99.6 3.2E-15 7E-20 146.7 15.4 116 88-221 5-126 (169)
151 cd01878 HflX HflX subfamily. 99.6 5.8E-15 1.3E-19 150.1 17.8 117 88-222 39-168 (204)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.8E-15 8.2E-20 143.7 15.4 113 91-222 2-122 (157)
153 cd01860 Rab5_related Rab5-rela 99.6 6.8E-15 1.5E-19 143.4 16.9 115 91-221 2-120 (163)
154 cd01861 Rab6 Rab6 subfamily. 99.6 9.8E-15 2.1E-19 142.0 18.0 111 92-220 2-118 (161)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.5E-15 9.9E-20 148.3 16.0 114 91-221 4-123 (183)
156 cd04106 Rab23_lke Rab23-like s 99.6 8.8E-15 1.9E-19 142.5 17.5 112 92-221 2-120 (162)
157 cd04158 ARD1 ARD1 subfamily. 99.6 5.1E-15 1.1E-19 145.9 15.9 109 92-221 1-114 (169)
158 smart00173 RAS Ras subfamily o 99.6 7.6E-15 1.6E-19 143.3 16.7 113 92-221 2-119 (164)
159 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1E-14 2.2E-19 141.6 17.3 112 91-221 2-120 (162)
160 smart00175 RAB Rab subfamily o 99.6 1E-14 2.2E-19 142.1 17.2 112 92-221 2-119 (164)
161 PLN00223 ADP-ribosylation fact 99.6 1.3E-14 2.8E-19 144.8 18.0 113 89-222 16-133 (181)
162 PRK12299 obgE GTPase CgtA; Rev 99.6 3.6E-15 7.9E-20 162.0 14.9 119 86-222 154-286 (335)
163 PRK00454 engB GTP-binding prot 99.6 1.2E-14 2.6E-19 146.5 17.7 122 82-222 16-150 (196)
164 cd01882 BMS1 Bms1. Bms1 is an 99.6 7.8E-16 1.7E-20 158.8 9.0 162 87-274 36-213 (225)
165 PTZ00133 ADP-ribosylation fact 99.6 8.9E-15 1.9E-19 146.1 16.3 112 89-221 16-132 (182)
166 PRK12298 obgE GTPase CgtA; Rev 99.6 4.7E-15 1E-19 164.2 15.5 116 88-221 157-289 (390)
167 cd01865 Rab3 Rab3 subfamily. 99.6 1E-14 2.2E-19 143.0 16.1 115 91-221 2-120 (165)
168 TIGR02729 Obg_CgtA Obg family 99.6 5.7E-15 1.2E-19 160.4 15.7 118 86-221 153-287 (329)
169 cd01863 Rab18 Rab18 subfamily. 99.6 9.4E-15 2E-19 142.2 15.7 113 92-220 2-119 (161)
170 cd01862 Rab7 Rab7 subfamily. 99.6 1.3E-14 2.8E-19 142.7 16.6 112 92-221 2-123 (172)
171 cd04159 Arl10_like Arl10-like 99.6 1.6E-14 3.5E-19 139.1 16.7 110 93-222 2-116 (159)
172 cd04119 RJL RJL (RabJ-Like) su 99.6 1.1E-14 2.3E-19 142.3 15.3 113 92-220 2-123 (168)
173 TIGR03156 GTP_HflX GTP-binding 99.6 1.2E-14 2.6E-19 159.2 17.4 116 88-221 187-315 (351)
174 cd03691 BipA_TypA_II BipA_TypA 99.6 3.5E-15 7.7E-20 130.0 10.4 83 390-472 1-86 (86)
175 cd04147 Ras_dva Ras-dva subfam 99.6 8E-15 1.7E-19 148.5 14.5 111 92-221 1-118 (198)
176 cd01867 Rab8_Rab10_Rab13_like 99.6 2.2E-14 4.7E-19 140.9 17.0 115 89-221 2-122 (167)
177 PTZ00369 Ras-like protein; Pro 99.6 1.4E-14 3.1E-19 145.5 16.0 115 90-221 5-124 (189)
178 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2.3E-14 4.9E-19 145.5 17.7 112 92-221 2-124 (201)
179 cd01866 Rab2 Rab2 subfamily. 99.6 2.3E-14 4.9E-19 141.0 17.1 116 90-221 4-123 (168)
180 TIGR00231 small_GTP small GTP- 99.6 4.9E-15 1.1E-19 142.0 12.1 113 91-222 2-123 (161)
181 PRK05291 trmE tRNA modificatio 99.6 7.4E-15 1.6E-19 166.3 15.4 114 89-221 214-335 (449)
182 cd04155 Arl3 Arl3 subfamily. 99.6 1.2E-14 2.5E-19 143.4 15.0 114 88-222 12-130 (173)
183 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 2.9E-14 6.3E-19 139.7 17.6 114 90-221 2-121 (166)
184 cd04175 Rap1 Rap1 subgroup. T 99.6 3.1E-14 6.7E-19 139.2 17.6 112 91-221 2-120 (164)
185 cd04136 Rap_like Rap-like subf 99.6 3.3E-14 7.2E-19 138.4 17.6 114 91-221 2-120 (163)
186 cd00877 Ran Ran (Ras-related n 99.6 1.6E-14 3.5E-19 141.9 15.3 113 92-220 2-117 (166)
187 PRK12297 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.6E-19 161.8 16.1 116 87-220 155-287 (424)
188 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.8E-14 4E-19 140.0 15.5 109 92-221 1-115 (160)
189 cd01868 Rab11_like Rab11-like. 99.6 3.1E-14 6.6E-19 139.3 17.1 114 90-221 3-122 (165)
190 cd04140 ARHI_like ARHI subfami 99.6 1.7E-14 3.7E-19 141.4 15.2 114 91-221 2-122 (165)
191 cd00880 Era_like Era (E. coli 99.6 2.9E-14 6.4E-19 136.6 16.5 111 95-222 1-119 (163)
192 cd03699 lepA_II lepA_II: This 99.6 4.5E-15 9.7E-20 129.2 9.7 82 390-472 1-86 (86)
193 cd04120 Rab12 Rab12 subfamily. 99.6 2.4E-14 5.1E-19 145.2 16.3 112 92-221 2-119 (202)
194 cd04127 Rab27A Rab27a subfamil 99.6 3.3E-14 7.1E-19 141.3 17.1 115 89-221 3-134 (180)
195 PRK12296 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.7E-19 163.5 15.5 118 86-221 155-298 (500)
196 cd01893 Miro1 Miro1 subfamily. 99.6 3E-14 6.6E-19 139.8 16.5 113 92-222 2-118 (166)
197 cd04139 RalA_RalB RalA/RalB su 99.6 2E-14 4.4E-19 139.9 15.0 113 92-221 2-119 (164)
198 COG2229 Predicted GTPase [Gene 99.6 4.7E-14 1E-18 135.3 16.8 125 90-223 10-137 (187)
199 cd04115 Rab33B_Rab33A Rab33B/R 99.6 4.5E-14 9.7E-19 139.2 17.4 114 90-221 2-123 (170)
200 TIGR02528 EutP ethanolamine ut 99.6 1.3E-14 2.7E-19 138.5 12.8 97 92-221 2-102 (142)
201 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.6E-14 5.7E-19 161.0 17.3 117 88-222 201-325 (442)
202 cd00154 Rab Rab family. Rab G 99.6 3.6E-14 7.8E-19 136.5 16.0 113 92-220 2-118 (159)
203 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 3.8E-14 8.2E-19 139.1 16.2 110 93-222 2-114 (164)
204 cd04122 Rab14 Rab14 subfamily. 99.6 4.2E-14 9.2E-19 138.7 16.5 115 91-221 3-121 (166)
205 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.9E-14 8.5E-19 139.4 16.2 111 92-223 1-116 (167)
206 COG0486 ThdF Predicted GTPase 99.6 2E-14 4.4E-19 156.7 15.0 118 87-222 214-339 (454)
207 PLN03118 Rab family protein; P 99.6 3.6E-14 7.9E-19 145.1 16.1 117 88-221 12-134 (211)
208 cd04177 RSR1 RSR1 subgroup. R 99.6 5.8E-14 1.3E-18 138.0 16.5 111 92-221 3-120 (168)
209 cd04112 Rab26 Rab26 subfamily. 99.6 4.5E-14 9.9E-19 142.1 15.9 115 92-221 2-120 (191)
210 cd04116 Rab9 Rab9 subfamily. 99.6 6.9E-14 1.5E-18 137.6 16.9 114 89-220 4-127 (170)
211 cd04123 Rab21 Rab21 subfamily. 99.6 7.4E-14 1.6E-18 135.5 16.8 112 92-221 2-119 (162)
212 cd04110 Rab35 Rab35 subfamily. 99.6 7.4E-14 1.6E-18 141.5 17.2 115 89-221 5-124 (199)
213 cd01881 Obg_like The Obg-like 99.6 3.3E-14 7.1E-19 140.2 14.2 110 95-222 1-135 (176)
214 cd00876 Ras Ras family. The R 99.6 5.4E-14 1.2E-18 136.1 15.2 111 92-221 1-118 (160)
215 cd04137 RheB Rheb (Ras Homolog 99.6 6.2E-14 1.4E-18 139.3 15.9 112 91-221 2-120 (180)
216 cd04142 RRP22 RRP22 subfamily. 99.6 6E-14 1.3E-18 142.0 15.7 112 92-221 2-130 (198)
217 PLN03110 Rab GTPase; Provision 99.6 9.7E-14 2.1E-18 142.5 17.2 115 88-220 10-130 (216)
218 cd04135 Tc10 TC10 subfamily. 99.6 6.7E-14 1.5E-18 138.1 15.5 114 92-222 2-119 (174)
219 cd04176 Rap2 Rap2 subgroup. T 99.6 1.1E-13 2.4E-18 135.1 16.6 113 91-220 2-119 (163)
220 COG0370 FeoB Fe2+ transport sy 99.6 6E-14 1.3E-18 159.1 16.7 110 91-220 4-121 (653)
221 PRK11058 GTPase HflX; Provisio 99.6 8.4E-14 1.8E-18 156.0 17.7 115 89-221 196-323 (426)
222 cd04126 Rab20 Rab20 subfamily. 99.5 1.5E-13 3.1E-18 141.2 17.7 109 92-221 2-114 (220)
223 cd04144 Ras2 Ras2 subfamily. 99.5 1.2E-13 2.7E-18 138.8 16.9 113 92-221 1-120 (190)
224 cd04109 Rab28 Rab28 subfamily. 99.5 1.4E-13 3.1E-18 141.2 17.6 112 92-221 2-123 (215)
225 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.5E-13 3.3E-18 135.6 17.0 112 92-221 2-120 (170)
226 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 7.1E-14 1.5E-18 138.2 14.6 111 91-221 3-121 (172)
227 cd01874 Cdc42 Cdc42 subfamily. 99.5 2.4E-13 5.3E-18 134.9 18.3 111 91-221 2-119 (175)
228 PLN03071 GTP-binding nuclear p 99.5 1.1E-13 2.3E-18 142.5 16.3 117 88-220 11-130 (219)
229 cd04121 Rab40 Rab40 subfamily. 99.5 2.4E-13 5.1E-18 136.6 18.4 116 88-221 4-124 (189)
230 cd04146 RERG_RasL11_like RERG/ 99.5 8.3E-14 1.8E-18 136.4 14.8 112 92-220 1-119 (165)
231 cd04101 RabL4 RabL4 (Rab-like4 99.5 2.4E-13 5.2E-18 132.7 17.8 116 92-221 2-121 (164)
232 PF00025 Arf: ADP-ribosylation 99.5 7.4E-14 1.6E-18 138.6 13.8 115 87-222 11-130 (175)
233 cd04118 Rab24 Rab24 subfamily. 99.5 1.7E-13 3.7E-18 137.9 16.4 115 92-221 2-119 (193)
234 cd03700 eEF2_snRNP_like_II EF2 99.5 2.9E-14 6.4E-19 126.0 9.1 82 390-471 1-92 (93)
235 cd00157 Rho Rho (Ras homology) 99.5 1.2E-13 2.5E-18 135.7 14.4 115 92-223 2-120 (171)
236 cd04134 Rho3 Rho3 subfamily. 99.5 2.3E-13 4.9E-18 136.8 16.3 115 91-222 1-119 (189)
237 cd04125 RabA_like RabA-like su 99.5 2.6E-13 5.6E-18 136.1 16.4 114 92-221 2-119 (188)
238 TIGR00437 feoB ferrous iron tr 99.5 1E-13 2.2E-18 161.7 15.4 105 97-221 1-113 (591)
239 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 5.9E-14 1.3E-18 124.3 10.0 81 390-470 1-91 (94)
240 cd04143 Rhes_like Rhes_like su 99.5 3.7E-13 8.1E-18 140.8 17.4 113 92-221 2-127 (247)
241 cd01892 Miro2 Miro2 subfamily. 99.5 2.7E-13 5.9E-18 133.6 15.6 117 88-221 2-122 (169)
242 cd04132 Rho4_like Rho4-like su 99.5 3.7E-13 8E-18 134.7 16.6 111 91-221 1-119 (187)
243 COG3596 Predicted GTPase [Gene 99.5 4.6E-13 1E-17 136.4 17.1 118 87-221 36-162 (296)
244 cd04111 Rab39 Rab39 subfamily. 99.5 3.2E-13 6.9E-18 138.2 16.0 114 90-221 2-123 (211)
245 smart00176 RAN Ran (Ras-relate 99.5 2.7E-13 5.8E-18 137.3 15.0 109 96-220 1-112 (200)
246 cd01871 Rac1_like Rac1-like su 99.5 6E-13 1.3E-17 131.9 17.0 114 91-221 2-119 (174)
247 PF01926 MMR_HSR1: 50S ribosom 99.5 1.9E-13 4.1E-18 126.0 12.3 107 92-216 1-116 (116)
248 cd01876 YihA_EngB The YihA (En 99.5 6.8E-13 1.5E-17 129.1 16.6 110 93-221 2-124 (170)
249 PLN03108 Rab family protein; P 99.5 7.1E-13 1.5E-17 135.5 17.4 118 88-221 4-125 (210)
250 cd04128 Spg1 Spg1p. Spg1p (se 99.5 4.8E-13 1E-17 133.6 15.7 113 92-221 2-118 (182)
251 cd04117 Rab15 Rab15 subfamily. 99.5 1.3E-12 2.7E-17 127.7 18.0 112 92-221 2-119 (161)
252 smart00174 RHO Rho (Ras homolo 99.5 4.8E-13 1E-17 132.0 14.7 110 93-221 1-116 (174)
253 cd01870 RhoA_like RhoA-like su 99.5 5E-13 1.1E-17 132.0 14.7 114 91-221 2-119 (175)
254 cd04130 Wrch_1 Wrch-1 subfamil 99.5 6.9E-13 1.5E-17 131.1 15.3 111 92-221 2-118 (173)
255 cd04133 Rop_like Rop subfamily 99.5 8.6E-13 1.9E-17 131.0 15.4 114 91-221 2-119 (176)
256 cd01875 RhoG RhoG subfamily. 99.5 1E-12 2.2E-17 132.3 16.2 111 91-221 4-121 (191)
257 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.1E-12 2.4E-17 127.0 15.4 118 87-222 6-129 (205)
258 cd00882 Ras_like_GTPase Ras-li 99.5 5.3E-13 1.1E-17 126.3 12.8 109 95-222 1-117 (157)
259 cd04148 RGK RGK subfamily. Th 99.4 1.8E-12 3.9E-17 133.6 16.6 113 92-221 2-120 (221)
260 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 3.8E-12 8.2E-17 127.1 16.7 115 89-220 4-122 (182)
261 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 3.8E-12 8.3E-17 122.7 15.8 119 88-222 20-143 (221)
262 cd04131 Rnd Rnd subfamily. Th 99.4 3.2E-12 6.8E-17 127.3 15.7 114 91-221 2-119 (178)
263 PF10662 PduV-EutP: Ethanolami 99.4 1.3E-12 2.8E-17 122.9 12.1 97 91-220 2-102 (143)
264 cd04105 SR_beta Signal recogni 99.4 2.1E-12 4.4E-17 131.4 13.8 112 91-223 1-125 (203)
265 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 5.6E-12 1.2E-16 130.3 16.8 114 90-220 13-130 (232)
266 KOG0092 GTPase Rab5/YPT51 and 99.4 1.4E-12 3E-17 125.8 11.1 112 90-221 5-124 (200)
267 KOG1489 Predicted GTP-binding 99.4 3.1E-12 6.6E-17 132.1 14.2 117 87-221 193-326 (366)
268 PTZ00132 GTP-binding nuclear p 99.4 1.3E-11 2.8E-16 126.7 17.6 118 88-221 7-127 (215)
269 KOG0078 GTP-binding protein SE 99.4 1.7E-11 3.7E-16 120.6 17.0 120 86-221 8-131 (207)
270 COG2262 HflX GTPases [General 99.4 9.4E-12 2E-16 133.7 16.5 119 86-222 188-319 (411)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 8.7E-12 1.9E-16 126.1 15.5 115 91-222 1-131 (196)
272 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.1E-11 2.3E-16 127.5 16.3 114 91-221 2-119 (222)
273 cd01896 DRG The developmentall 99.4 2.6E-11 5.6E-16 125.9 18.6 131 92-242 2-155 (233)
274 cd04103 Centaurin_gamma Centau 99.4 8.3E-12 1.8E-16 121.7 13.4 104 92-220 2-112 (158)
275 COG1084 Predicted GTPase [Gene 99.4 1.8E-11 3.9E-16 127.8 16.2 125 89-232 167-306 (346)
276 cd04104 p47_IIGP_like p47 (47- 99.3 1.6E-11 3.4E-16 124.3 14.6 114 91-221 2-121 (197)
277 cd04129 Rho2 Rho2 subfamily. 99.3 1.8E-11 3.9E-16 122.7 14.8 112 91-221 2-119 (187)
278 cd01873 RhoBTB RhoBTB subfamil 99.3 2.5E-11 5.3E-16 122.6 15.7 66 154-221 65-134 (195)
279 KOG0073 GTP-binding ADP-ribosy 99.3 3.7E-11 7.9E-16 112.7 15.1 113 89-222 15-132 (185)
280 PRK09866 hypothetical protein; 99.3 2.8E-11 6E-16 136.9 16.9 67 155-221 230-303 (741)
281 PF00071 Ras: Ras family; Int 99.3 4E-11 8.6E-16 116.7 15.9 114 92-221 1-118 (162)
282 KOG0075 GTP-binding ADP-ribosy 99.3 2.1E-11 4.5E-16 112.0 11.0 112 91-222 21-137 (186)
283 KOG1191 Mitochondrial GTPase [ 99.3 2.1E-11 4.6E-16 132.7 13.1 116 85-217 263-387 (531)
284 KOG0080 GTPase Rab18, small G 99.3 3E-11 6.6E-16 112.4 11.4 115 89-221 10-131 (209)
285 PRK13768 GTPase; Provisional 99.3 8.4E-11 1.8E-15 123.5 15.5 133 91-223 3-178 (253)
286 cd01850 CDC_Septin CDC/Septin. 99.3 7.9E-11 1.7E-15 125.2 14.9 139 90-237 4-174 (276)
287 PF09439 SRPRB: Signal recogni 99.2 2.9E-11 6.2E-16 119.0 10.5 113 89-224 2-129 (181)
288 KOG0070 GTP-binding ADP-ribosy 99.2 4.3E-11 9.4E-16 115.3 10.7 114 88-222 15-133 (181)
289 KOG0394 Ras-related GTPase [Ge 99.2 4.6E-11 1E-15 114.1 10.5 114 88-221 7-132 (210)
290 PF08477 Miro: Miro-like prote 99.2 3E-11 6.4E-16 111.5 8.6 113 92-218 1-119 (119)
291 KOG0098 GTPase Rab2, small G p 99.2 1E-10 2.2E-15 112.0 12.1 117 90-222 6-126 (216)
292 cd04102 RabL3 RabL3 (Rab-like3 99.2 2.5E-10 5.4E-15 115.7 15.5 115 92-222 2-144 (202)
293 COG0536 Obg Predicted GTPase [ 99.2 7.7E-11 1.7E-15 123.5 11.8 117 88-222 157-290 (369)
294 PRK09435 membrane ATPase/prote 99.2 2.3E-10 4.9E-15 123.7 15.6 139 88-235 54-223 (332)
295 PLN00023 GTP-binding protein; 99.2 3.3E-10 7.1E-15 120.7 14.8 121 85-221 16-165 (334)
296 COG1163 DRG Predicted GTPase [ 99.2 2.5E-10 5.4E-15 118.7 12.3 205 89-359 62-288 (365)
297 KOG0093 GTPase Rab3, small G p 99.2 6.9E-10 1.5E-14 102.0 13.7 120 88-223 19-142 (193)
298 cd01899 Ygr210 Ygr210 subfamil 99.1 1.2E-09 2.5E-14 118.1 16.9 88 93-190 1-111 (318)
299 KOG0087 GTPase Rab11/YPT3, sma 99.1 3.6E-10 7.9E-15 110.7 10.3 117 87-221 11-133 (222)
300 KOG1532 GTPase XAB1, interacts 99.1 2.4E-10 5.2E-15 115.7 9.3 138 87-224 16-198 (366)
301 COG1100 GTPase SAR1 and relate 99.1 2.9E-09 6.2E-14 109.2 16.2 113 91-223 6-127 (219)
302 cd01853 Toc34_like Toc34-like 99.1 4E-09 8.7E-14 110.2 16.5 117 87-220 28-162 (249)
303 KOG0090 Signal recognition par 99.1 6.6E-10 1.4E-14 109.0 9.7 119 88-227 36-165 (238)
304 KOG0095 GTPase Rab30, small G 99.1 2.2E-09 4.8E-14 98.7 12.4 118 88-221 5-126 (213)
305 KOG0079 GTP-binding protein H- 99.0 1.3E-09 2.8E-14 100.3 10.7 116 91-222 9-127 (198)
306 KOG0076 GTP-binding ADP-ribosy 99.0 5.7E-10 1.2E-14 105.8 8.6 121 89-222 16-141 (197)
307 PF03308 ArgK: ArgK protein; 99.0 2.8E-09 6.1E-14 109.2 12.6 135 88-233 27-191 (266)
308 PF03144 GTP_EFTU_D2: Elongati 99.0 3.9E-10 8.4E-15 95.2 5.0 68 404-471 1-74 (74)
309 TIGR00073 hypB hydrogenase acc 99.0 7.1E-09 1.5E-13 105.8 15.2 127 86-221 18-162 (207)
310 PRK09602 translation-associate 99.0 8.7E-09 1.9E-13 114.6 17.0 82 91-190 2-114 (396)
311 TIGR02836 spore_IV_A stage IV 99.0 6E-09 1.3E-13 112.7 14.1 153 88-242 15-215 (492)
312 smart00053 DYNc Dynamin, GTPas 99.0 6.5E-09 1.4E-13 107.6 13.3 69 155-223 125-208 (240)
313 PF03029 ATP_bind_1: Conserved 99.0 9.3E-09 2E-13 106.8 14.4 129 95-223 1-172 (238)
314 PTZ00099 rab6; Provisional 98.9 7.7E-09 1.7E-13 102.7 12.7 69 153-221 27-99 (176)
315 KOG0086 GTPase Rab4, small G p 98.9 1.2E-08 2.5E-13 94.4 12.3 119 88-222 7-129 (214)
316 KOG0072 GTP-binding ADP-ribosy 98.9 1.7E-09 3.7E-14 99.2 6.6 113 89-222 17-134 (182)
317 KOG0071 GTP-binding ADP-ribosy 98.9 1.3E-08 2.8E-13 93.0 12.0 113 90-223 17-134 (180)
318 KOG0074 GTP-binding ADP-ribosy 98.9 1.5E-08 3.3E-13 92.7 10.9 114 88-222 15-134 (185)
319 COG5192 BMS1 GTP-binding prote 98.9 1.9E-08 4.2E-13 110.0 12.9 121 90-236 69-190 (1077)
320 COG4917 EutP Ethanolamine util 98.9 8.4E-09 1.8E-13 92.8 8.4 99 91-221 2-104 (148)
321 KOG0088 GTPase Rab21, small G 98.9 3.2E-09 7E-14 98.7 5.9 112 90-221 13-132 (218)
322 KOG0395 Ras-related GTPase [Ge 98.8 4.2E-08 9.1E-13 98.9 13.6 115 90-221 3-122 (196)
323 TIGR00991 3a0901s02IAP34 GTP-b 98.8 7E-08 1.5E-12 102.5 15.8 116 88-220 36-166 (313)
324 TIGR00750 lao LAO/AO transport 98.8 7.3E-08 1.6E-12 104.0 15.9 128 88-222 32-187 (300)
325 KOG2486 Predicted GTPase [Gene 98.8 2.3E-08 4.9E-13 102.2 10.7 119 84-221 130-262 (320)
326 KOG0091 GTPase Rab39, small G 98.8 9.3E-08 2E-12 89.7 13.8 114 91-221 9-130 (213)
327 COG1703 ArgK Putative periplas 98.8 8.3E-08 1.8E-12 99.6 14.7 136 88-234 49-214 (323)
328 PF00350 Dynamin_N: Dynamin fa 98.8 1.3E-08 2.7E-13 100.0 8.5 64 154-217 100-168 (168)
329 PRK09601 GTP-binding protein Y 98.8 3.1E-07 6.7E-12 100.2 19.7 81 91-189 3-107 (364)
330 PF04548 AIG1: AIG1 family; I 98.8 1.1E-07 2.3E-12 97.4 15.3 116 91-223 1-132 (212)
331 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 6.9E-08 1.5E-12 99.3 13.7 115 92-223 1-127 (232)
332 KOG0083 GTPase Rab26/Rab37, sm 98.8 5.6E-09 1.2E-13 94.3 4.3 112 95-221 2-117 (192)
333 KOG0052 Translation elongation 98.7 3.9E-09 8.4E-14 113.1 2.2 131 88-222 5-157 (391)
334 cd03693 EF1_alpha_II EF1_alpha 98.7 1E-07 2.2E-12 83.9 10.4 85 387-475 2-90 (91)
335 cd01342 Translation_Factor_II_ 98.7 6.3E-08 1.4E-12 82.1 8.9 78 390-471 1-82 (83)
336 COG5019 CDC3 Septin family pro 98.7 2.4E-07 5.1E-12 98.8 14.3 151 88-247 21-203 (373)
337 PF05049 IIGP: Interferon-indu 98.7 1.2E-07 2.7E-12 103.2 12.6 113 90-219 35-153 (376)
338 TIGR00101 ureG urease accessor 98.7 2.3E-07 5E-12 93.9 13.6 61 154-221 91-151 (199)
339 cd03698 eRF3_II_like eRF3_II_l 98.7 1.4E-07 3.1E-12 81.4 10.1 79 389-472 1-83 (83)
340 KOG0081 GTPase Rab27, small G 98.7 7.7E-08 1.7E-12 89.7 8.4 68 155-222 67-139 (219)
341 PF00735 Septin: Septin; Inte 98.6 2.5E-07 5.5E-12 98.5 13.2 138 91-237 5-173 (281)
342 KOG0077 Vesicle coat complex C 98.6 1.3E-07 2.7E-12 89.4 8.4 125 88-236 18-147 (193)
343 PTZ00258 GTP-binding protein; 98.6 2.3E-07 5E-12 102.3 11.8 84 88-189 19-126 (390)
344 KOG1490 GTP-binding protein CR 98.6 1.9E-07 4E-12 102.2 9.7 118 87-222 165-296 (620)
345 cd01900 YchF YchF subfamily. 98.6 1.7E-07 3.6E-12 99.0 9.0 80 93-190 1-104 (274)
346 KOG1547 Septin CDC10 and relat 98.5 1.8E-06 3.8E-11 86.3 12.8 143 88-240 44-218 (336)
347 KOG0410 Predicted GTP binding 98.5 8.5E-07 1.9E-11 92.4 10.3 115 88-220 176-307 (410)
348 PRK10463 hydrogenase nickel in 98.5 1.3E-06 2.8E-11 92.3 12.0 128 85-221 99-244 (290)
349 KOG4252 GTP-binding protein [S 98.4 2.7E-07 5.8E-12 87.8 5.9 119 87-221 17-138 (246)
350 TIGR00993 3a0901s04IAP86 chlor 98.4 3.7E-06 7.9E-11 96.4 15.9 119 86-221 114-250 (763)
351 KOG2655 Septin family protein 98.4 2.4E-06 5.2E-11 92.0 13.7 145 90-244 21-196 (366)
352 KOG0097 GTPase Rab14, small G 98.4 2.4E-06 5.2E-11 78.1 11.6 119 87-221 8-130 (215)
353 cd01859 MJ1464 MJ1464. This f 98.4 1.4E-06 2.9E-11 84.7 10.0 52 169-220 3-54 (156)
354 cd04089 eRF3_II eRF3_II: domai 98.4 2.6E-06 5.5E-11 73.4 10.2 78 389-472 1-82 (82)
355 KOG0393 Ras-related small GTPa 98.3 2.7E-06 5.9E-11 84.5 9.3 112 90-220 4-122 (198)
356 cd03696 selB_II selB_II: this 98.3 4.9E-06 1.1E-10 71.8 9.1 79 390-472 1-83 (83)
357 cd03695 CysN_NodQ_II CysN_NodQ 98.2 6.9E-06 1.5E-10 70.5 9.5 78 391-472 2-81 (81)
358 KOG1486 GTP-binding protein DR 98.2 5.6E-06 1.2E-10 83.4 9.8 84 90-191 62-152 (364)
359 cd03697 EFTU_II EFTU_II: Elong 98.2 5.9E-06 1.3E-10 72.0 8.2 79 391-473 2-86 (87)
360 cd02036 MinD Bacterial cell di 98.2 4.1E-05 8.9E-10 75.7 14.7 137 95-239 5-146 (179)
361 cd03694 GTPBP_II Domain II of 98.2 1.3E-05 2.9E-10 69.7 9.7 78 391-472 2-87 (87)
362 KOG3883 Ras family small GTPas 98.1 4.1E-05 8.8E-10 71.6 12.7 118 88-221 7-132 (198)
363 cd03110 Fer4_NifH_child This p 98.1 5.5E-05 1.2E-09 75.1 14.6 68 153-222 91-158 (179)
364 PRK14722 flhF flagellar biosyn 98.1 9.9E-06 2.1E-10 89.0 9.9 128 88-221 135-295 (374)
365 cd03114 ArgK-like The function 98.1 1.9E-05 4.2E-10 76.0 10.8 59 153-218 90-148 (148)
366 KOG3886 GTP-binding protein [S 98.1 6.9E-06 1.5E-10 81.9 7.3 121 89-226 3-135 (295)
367 COG0378 HypB Ni2+-binding GTPa 98.1 1.4E-05 3.1E-10 78.5 9.0 122 90-221 13-156 (202)
368 TIGR01425 SRP54_euk signal rec 98.1 3.1E-05 6.6E-10 86.5 12.5 130 89-220 99-252 (429)
369 cd01858 NGP_1 NGP-1. Autoanti 98.1 6.4E-06 1.4E-10 80.1 6.3 57 89-165 101-157 (157)
370 PF03193 DUF258: Protein of un 98.1 2.6E-06 5.7E-11 82.4 3.5 65 91-168 36-100 (161)
371 cd01858 NGP_1 NGP-1. Autoanti 98.0 2E-05 4.2E-10 76.7 9.2 50 172-221 2-53 (157)
372 cd03115 SRP The signal recogni 98.0 3.8E-05 8.2E-10 75.9 11.4 128 92-221 2-153 (173)
373 KOG1954 Endocytosis/signaling 98.0 5.2E-05 1.1E-09 80.4 12.5 133 87-223 55-227 (532)
374 cd01856 YlqF YlqF. Proteins o 98.0 2E-05 4.3E-10 77.9 8.9 57 162-220 2-59 (171)
375 TIGR03597 GTPase_YqeH ribosome 98.0 6E-06 1.3E-10 91.4 5.7 131 91-237 155-297 (360)
376 cd04178 Nucleostemin_like Nucl 98.0 9.3E-06 2E-10 80.2 6.1 58 88-165 115-172 (172)
377 cd03112 CobW_like The function 98.0 3.8E-05 8.3E-10 74.8 10.0 125 92-219 2-158 (158)
378 TIGR00064 ftsY signal recognit 97.9 9.1E-05 2E-09 78.7 12.8 131 88-220 70-230 (272)
379 TIGR03596 GTPase_YlqF ribosome 97.9 2.9E-05 6.3E-10 82.9 9.0 57 162-220 4-61 (276)
380 cd01855 YqeH YqeH. YqeH is an 97.9 3.6E-05 7.8E-10 77.3 8.8 57 163-221 19-75 (190)
381 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 2.2E-05 4.7E-10 76.1 6.6 117 89-221 9-128 (216)
382 cd01855 YqeH YqeH. YqeH is an 97.9 1.3E-05 2.8E-10 80.6 5.3 64 90-165 127-190 (190)
383 PRK10416 signal recognition pa 97.9 0.00011 2.4E-09 79.8 12.6 130 89-220 113-272 (318)
384 cd01849 YlqF_related_GTPase Yl 97.9 1.9E-05 4E-10 76.7 5.8 58 88-165 98-155 (155)
385 PRK12288 GTPase RsgA; Reviewed 97.8 2.2E-05 4.7E-10 86.2 6.2 65 92-169 207-271 (347)
386 PF00448 SRP54: SRP54-type pro 97.8 3.1E-05 6.6E-10 78.2 6.7 124 91-221 2-154 (196)
387 KOG1707 Predicted Ras related/ 97.8 8.4E-05 1.8E-09 83.5 10.5 117 88-222 7-130 (625)
388 KOG0448 Mitofusin 1 GTPase, in 97.8 0.00014 3.1E-09 83.0 12.4 134 88-222 107-276 (749)
389 COG1162 Predicted GTPases [Gen 97.8 2E-05 4.2E-10 83.2 4.7 65 91-168 165-229 (301)
390 PRK10867 signal recognition pa 97.8 0.0019 4E-08 72.9 20.5 144 89-237 99-268 (433)
391 cd03692 mtIF2_IVc mtIF2_IVc: t 97.8 0.00019 4.1E-09 62.0 9.8 75 392-470 3-82 (84)
392 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 3E-05 6.5E-10 74.0 5.2 56 91-166 84-139 (141)
393 cd01849 YlqF_related_GTPase Yl 97.8 7.6E-05 1.6E-09 72.4 8.0 42 180-221 1-43 (155)
394 PRK14974 cell division protein 97.8 0.00016 3.5E-09 78.8 11.1 129 89-220 139-292 (336)
395 TIGR00157 ribosome small subun 97.7 3.4E-05 7.5E-10 80.7 5.5 64 91-168 121-184 (245)
396 PRK00771 signal recognition pa 97.7 0.00019 4.1E-09 80.9 11.6 130 88-220 93-245 (437)
397 cd02038 FleN-like FleN is a me 97.7 0.00038 8.3E-09 66.3 12.0 113 95-233 5-122 (139)
398 cd01851 GBP Guanylate-binding 97.7 0.00025 5.5E-09 73.2 11.4 91 88-190 5-103 (224)
399 PRK11537 putative GTP-binding 97.7 0.00028 6E-09 76.7 12.1 143 88-232 2-174 (318)
400 PRK13849 putative crown gall t 97.7 0.00042 9.1E-09 71.9 12.7 125 92-218 3-151 (231)
401 KOG1673 Ras GTPases [General f 97.7 0.00021 4.6E-09 67.0 9.0 115 90-220 20-137 (205)
402 PRK12727 flagellar biosynthesi 97.7 0.00034 7.4E-09 79.5 12.3 139 88-229 348-505 (559)
403 TIGR03596 GTPase_YlqF ribosome 97.7 0.00011 2.4E-09 78.4 8.0 57 89-165 117-173 (276)
404 TIGR00092 GTP-binding protein 97.7 0.00016 3.4E-09 79.3 9.2 82 91-190 3-109 (368)
405 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00011 2.4E-09 78.9 7.9 57 162-220 7-64 (287)
406 PRK12289 GTPase RsgA; Reviewed 97.7 4.9E-05 1.1E-09 83.4 5.3 64 92-168 174-237 (352)
407 cd01856 YlqF YlqF. Proteins o 97.7 8.3E-05 1.8E-09 73.4 6.5 58 88-165 113-170 (171)
408 COG0012 Predicted GTPase, prob 97.6 0.00012 2.7E-09 79.0 7.9 89 91-190 3-109 (372)
409 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.0001 2.2E-09 79.1 6.8 60 88-167 119-178 (287)
410 COG3640 CooC CO dehydrogenase 97.6 0.00049 1.1E-08 69.6 10.9 63 155-220 134-198 (255)
411 PRK11889 flhF flagellar biosyn 97.6 0.00033 7.2E-09 76.8 10.4 132 88-221 239-391 (436)
412 cd02037 MRP-like MRP (Multiple 97.5 0.00032 6.9E-09 69.1 8.9 141 95-237 5-159 (169)
413 COG1161 Predicted GTPases [Gen 97.5 0.00011 2.4E-09 80.0 5.7 57 90-166 132-188 (322)
414 PRK13796 GTPase YqeH; Provisio 97.5 0.00013 2.7E-09 81.0 6.2 61 90-166 160-221 (365)
415 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00012 2.7E-09 78.5 5.9 64 91-168 162-226 (287)
416 PRK12726 flagellar biosynthesi 97.5 0.00026 5.7E-09 77.4 8.4 129 88-220 204-355 (407)
417 TIGR02475 CobW cobalamin biosy 97.5 0.00063 1.4E-08 74.7 11.1 146 88-233 2-200 (341)
418 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00042 9E-09 66.1 8.5 52 170-221 3-56 (141)
419 KOG1534 Putative transcription 97.5 0.0002 4.3E-09 70.8 6.1 143 92-237 5-191 (273)
420 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00039 8.4E-09 69.2 8.5 130 91-223 1-157 (178)
421 TIGR00959 ffh signal recogniti 97.5 0.00093 2E-08 75.2 12.4 144 89-237 98-267 (428)
422 PHA02518 ParA-like protein; Pr 97.5 0.0013 2.7E-08 67.0 12.3 138 92-231 2-157 (211)
423 COG0523 Putative GTPases (G3E 97.5 0.002 4.3E-08 69.9 14.2 130 91-223 2-161 (323)
424 cd02117 NifH_like This family 97.4 0.001 2.3E-08 68.0 11.1 86 153-241 115-207 (212)
425 cd03702 IF2_mtIF2_II This fami 97.4 0.00079 1.7E-08 59.4 8.6 77 391-472 2-79 (95)
426 TIGR01969 minD_arch cell divis 97.4 0.0027 6E-08 66.3 14.4 82 153-238 107-189 (251)
427 KOG0447 Dynamin-like GTP bindi 97.4 0.0019 4.2E-08 71.6 13.3 136 87-222 305-494 (980)
428 PRK12289 GTPase RsgA; Reviewed 97.4 0.00072 1.6E-08 74.3 10.0 48 174-221 85-134 (352)
429 PF09547 Spore_IV_A: Stage IV 97.3 0.00095 2.1E-08 73.0 10.0 153 90-244 17-217 (492)
430 TIGR03371 cellulose_yhjQ cellu 97.3 0.0031 6.7E-08 65.8 13.8 82 155-238 115-199 (246)
431 KOG1491 Predicted GTP-binding 97.3 0.00066 1.4E-08 71.9 8.3 85 88-190 18-126 (391)
432 PRK14721 flhF flagellar biosyn 97.3 0.0014 2.9E-08 73.5 11.4 130 88-220 189-339 (420)
433 cd01859 MJ1464 MJ1464. This f 97.3 0.00036 7.7E-09 67.6 6.0 24 88-111 99-122 (156)
434 PRK00098 GTPase RsgA; Reviewed 97.3 0.00033 7.1E-09 75.6 6.1 63 91-167 165-228 (298)
435 cd03111 CpaE_like This protein 97.3 0.0023 5E-08 57.9 10.6 59 156-216 44-106 (106)
436 cd02032 Bchl_like This family 97.3 0.0036 7.7E-08 66.5 13.8 81 154-240 115-200 (267)
437 TIGR01007 eps_fam capsular exo 97.3 0.0029 6.2E-08 64.3 12.5 68 153-221 126-194 (204)
438 PRK13185 chlL protochlorophyll 97.3 0.0027 5.9E-08 67.5 12.7 82 153-240 116-202 (270)
439 PRK08099 bifunctional DNA-bind 97.3 0.00097 2.1E-08 74.7 9.4 144 87-237 216-396 (399)
440 TIGR00157 ribosome small subun 97.3 0.00074 1.6E-08 70.7 8.0 48 174-221 32-81 (245)
441 KOG2485 Conserved ATP/GTP bind 97.3 0.00037 7.9E-09 73.2 5.5 79 88-178 141-220 (335)
442 COG0541 Ffh Signal recognition 97.3 0.023 5E-07 62.8 19.5 145 88-237 98-267 (451)
443 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00094 2E-08 71.7 8.5 47 175-221 75-123 (287)
444 PRK00098 GTPase RsgA; Reviewed 97.2 0.0011 2.4E-08 71.5 8.8 46 175-220 77-124 (298)
445 CHL00072 chlL photochlorophyll 97.2 0.0042 9.1E-08 66.8 12.8 85 154-245 115-204 (290)
446 PRK12723 flagellar biosynthesi 97.2 0.0045 9.7E-08 68.9 13.2 130 89-220 173-325 (388)
447 PRK05703 flhF flagellar biosyn 97.2 0.0017 3.7E-08 73.3 10.1 129 90-220 221-370 (424)
448 PRK12724 flagellar biosynthesi 97.1 0.0025 5.3E-08 71.0 10.7 129 90-220 223-372 (432)
449 KOG1424 Predicted GTP-binding 97.1 0.0003 6.4E-09 78.2 3.4 57 90-166 314-370 (562)
450 cd02042 ParA ParA and ParB of 97.1 0.004 8.7E-08 55.8 10.1 81 93-201 2-84 (104)
451 KOG1533 Predicted GTPase [Gene 97.1 0.00058 1.3E-08 68.7 5.0 129 93-221 5-177 (290)
452 TIGR01968 minD_bact septum sit 97.0 0.0075 1.6E-07 63.4 13.1 83 154-238 111-196 (261)
453 TIGR01281 DPOR_bchL light-inde 97.0 0.0049 1.1E-07 65.4 11.8 82 153-240 114-200 (268)
454 PRK06731 flhF flagellar biosyn 97.0 0.0057 1.2E-07 64.8 11.9 131 89-221 74-225 (270)
455 cd03688 eIF2_gamma_II eIF2_gam 97.0 0.0054 1.2E-07 55.0 9.8 73 386-462 2-95 (113)
456 TIGR03597 GTPase_YqeH ribosome 97.0 0.0026 5.7E-08 70.5 9.4 54 166-221 51-104 (360)
457 cd03703 aeIF5B_II aeIF5B_II: T 97.0 0.005 1.1E-07 55.5 9.2 80 392-471 3-93 (110)
458 PRK13232 nifH nitrogenase redu 97.0 0.0045 9.7E-08 65.9 10.7 86 152-239 114-204 (273)
459 CHL00175 minD septum-site dete 97.0 0.015 3.2E-07 62.2 14.6 89 154-245 126-217 (281)
460 cd02040 NifH NifH gene encodes 96.9 0.0073 1.6E-07 64.0 11.7 85 153-239 115-205 (270)
461 KOG1487 GTP-binding protein DR 96.9 0.0017 3.7E-08 66.2 6.1 86 91-194 60-152 (358)
462 PRK06995 flhF flagellar biosyn 96.9 0.0042 9.2E-08 70.7 10.0 129 89-220 255-404 (484)
463 KOG3887 Predicted small GTPase 96.9 0.0069 1.5E-07 61.3 10.2 116 91-223 28-151 (347)
464 TIGR03815 CpaE_hom_Actino heli 96.9 0.02 4.4E-07 62.5 14.7 81 153-239 203-283 (322)
465 COG1419 FlhF Flagellar GTP-bin 96.9 0.0069 1.5E-07 66.6 10.9 126 88-221 201-352 (407)
466 cd00066 G-alpha G protein alph 96.8 0.0024 5.2E-08 69.6 7.3 82 140-221 146-242 (317)
467 KOG4423 GTP-binding protein-li 96.8 0.00012 2.6E-09 70.8 -2.5 115 90-222 25-150 (229)
468 PRK13230 nitrogenase reductase 96.8 0.0094 2E-07 63.7 11.4 91 153-245 115-210 (279)
469 smart00275 G_alpha G protein a 96.8 0.0038 8.3E-08 68.6 8.4 82 140-221 169-265 (342)
470 PRK14723 flhF flagellar biosyn 96.8 0.0062 1.3E-07 72.6 10.6 129 90-220 185-336 (767)
471 PRK01889 GTPase RsgA; Reviewed 96.7 0.0056 1.2E-07 67.7 9.4 46 176-221 110-156 (356)
472 KOG3859 Septins (P-loop GTPase 96.6 0.0063 1.4E-07 62.7 8.1 145 89-248 41-219 (406)
473 TIGR01287 nifH nitrogenase iro 96.6 0.013 2.8E-07 62.5 11.0 84 154-239 115-204 (275)
474 PF07015 VirC1: VirC1 protein; 96.6 0.011 2.4E-07 60.5 9.8 121 97-219 9-152 (231)
475 PF01656 CbiA: CobQ/CobB/MinD/ 96.6 0.0038 8.3E-08 62.4 6.5 80 154-235 94-177 (195)
476 KOG2484 GTPase [General functi 96.6 0.0014 2.9E-08 71.0 3.2 81 87-187 249-331 (435)
477 cd03701 IF2_IF5B_II IF2_IF5B_I 96.6 0.011 2.4E-07 52.3 8.5 76 391-471 2-78 (95)
478 PRK13796 GTPase YqeH; Provisio 96.6 0.01 2.3E-07 65.8 10.3 52 167-221 58-110 (365)
479 KOG2743 Cobalamin synthesis pr 96.6 0.005 1.1E-07 64.2 6.9 139 83-223 50-227 (391)
480 PRK10818 cell division inhibit 96.6 0.035 7.6E-07 58.9 13.8 83 154-238 113-206 (270)
481 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.019 4.1E-07 49.8 9.8 77 93-199 2-79 (99)
482 PRK12288 GTPase RsgA; Reviewed 96.5 0.013 2.8E-07 64.5 10.4 46 176-221 118-164 (347)
483 PF14578 GTP_EFTU_D4: Elongati 96.5 0.026 5.6E-07 48.0 9.5 75 389-471 4-80 (81)
484 KOG2423 Nucleolar GTPase [Gene 96.4 0.002 4.3E-08 69.3 3.1 26 86-111 303-328 (572)
485 TIGR03453 partition_RepA plasm 96.3 0.031 6.6E-07 62.8 12.2 90 154-245 234-335 (387)
486 KOG3905 Dynein light intermedi 96.3 0.072 1.6E-06 56.3 13.6 23 88-110 50-72 (473)
487 PRK13869 plasmid-partitioning 96.3 0.028 6E-07 63.4 11.5 85 154-240 251-347 (405)
488 KOG0780 Signal recognition par 96.3 0.024 5.2E-07 61.3 10.2 126 89-220 100-253 (483)
489 cd02035 ArsA ArsA ATPase funct 96.3 0.04 8.6E-07 56.6 11.7 66 155-220 114-183 (217)
490 KOG4181 Uncharacterized conser 96.3 0.091 2E-06 56.0 14.0 24 88-111 186-209 (491)
491 PRK13695 putative NTPase; Prov 96.3 0.011 2.4E-07 58.4 7.1 39 177-217 95-136 (174)
492 COG0552 FtsY Signal recognitio 96.2 0.028 6.1E-07 60.2 10.3 124 88-219 137-296 (340)
493 TIGR03348 VI_IcmF type VI secr 96.2 0.0063 1.4E-07 77.5 6.2 117 89-221 110-257 (1169)
494 PRK13231 nitrogenase reductase 96.2 0.055 1.2E-06 57.3 12.3 86 153-240 112-199 (264)
495 PRK13235 nifH nitrogenase redu 96.1 0.057 1.2E-06 57.5 12.2 84 153-238 116-205 (274)
496 cd04178 Nucleostemin_like Nucl 96.0 0.01 2.3E-07 58.6 5.4 42 180-221 1-44 (172)
497 PHA02519 plasmid partition pro 96.0 0.12 2.7E-06 57.8 14.5 87 153-241 233-329 (387)
498 PRK13233 nifH nitrogenase redu 95.9 0.033 7.2E-07 59.3 9.1 81 153-240 117-208 (275)
499 TIGR00257 IMPACT_YIGZ uncharac 95.9 0.11 2.4E-06 52.6 12.1 111 636-751 88-200 (204)
500 PRK13705 plasmid-partitioning 95.9 0.14 3.1E-06 57.3 14.4 85 154-240 234-328 (388)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-148 Score=1196.80 Aligned_cols=684 Identities=55% Similarity=0.892 Sum_probs=654.9
Q ss_pred ccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeC
Q 004038 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 83 ~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
...+.+++|||+|++|.++|||||.++++|++|.+..+++++.+.+++|+++.|++||||++++...+.|+++++|+|||
T Consensus 32 ~~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDT 111 (721)
T KOG0465|consen 32 ARIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDT 111 (721)
T ss_pred ccCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecC
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
|||.||.-|+++++++.|++|+|+|+..|++.||..+|++++++++|.|.++|||||.++++.+++++|+.+|+.+++.+
T Consensus 112 PGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~v 191 (721)
T KOG0465|consen 112 PGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVV 191 (721)
T ss_pred CCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
|+|++.++.|+|++|++++++++|+.+ .|......++|+++.+.+.+.|++|+|.+++.||++.|.||+++.++.+.++
T Consensus 192 qiPig~e~~f~GvvDlv~~kai~~~g~-~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 192 QIPIGSESNFKGVVDLVNGKAIYWDGE-NGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred EccccccccchhHHhhhhceEEEEcCC-CCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 999999999999999999999999976 4667777999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-CCCCcccccccccCCCC-CeEEEEEEEeec
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-DPENPEATLERAASDDE-PFAGLAFKIMSD 400 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-~~~~~~~~~~~~~~~~~-p~~~~V~K~~~~ 400 (777)
.++|+.++.+.++|||||||++|+||++|||+|++|||+|.|....... ..+++ +...+....++ ||++++||+..+
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~-ekv~l~~~~d~~Pfv~LAFKle~g 349 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSK-EKVTLSPSRDKDPFVALAFKLEEG 349 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCc-cceEeccCCCCCceeeeEEEeeec
Confidence 9999999999999999999999999999999999999999998876654 21111 22333433444 999999999999
Q ss_pred CCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccC-CCcccc
Q 004038 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILL 479 (777)
Q Consensus 401 ~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~-~~~~~l 479 (777)
++ |.++|+|||+|+|++||.|||.++++++|+.+|++||+++.++|+++.|||||++.|+ ++.+|||+++. .....+
T Consensus 350 ~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m 427 (721)
T KOG0465|consen 350 RF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSM 427 (721)
T ss_pred Cc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCcccccee
Confidence 99 9999999999999999999999999999999999999999999999999999999999 89999999988 667889
Q ss_pred ccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCC
Q 004038 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAP 559 (777)
Q Consensus 480 ~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p 559 (777)
+.|.+|+||++++|+|.+..|.+++.+||.++.+|||+|+++.|.|+||++|+|||||||||..+||+++||+++.+|+|
T Consensus 428 ~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp 507 (721)
T KOG0465|consen 428 ESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKP 507 (721)
T ss_pred eeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCC--cEEEecccCCcCccccHHHHHHHHHHHHHcCcccC
Q 004038 560 QVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG--YEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAG 637 (777)
Q Consensus 560 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g--~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g 637 (777)
+|+|||||..++++++.|+||+||.|||+++.-.++|++.+.+ ++|.+++.|+.+|++|++++++||.++++.|||.|
T Consensus 508 ~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~g 587 (721)
T KOG0465|consen 508 QVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIG 587 (721)
T ss_pred eeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999987754 67999999999999999999999999999999999
Q ss_pred CceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeecc
Q 004038 638 FPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDK 717 (777)
Q Consensus 638 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~ 717 (777)
+|+.|+++.|.||.+|.+||++.+|+.|++.||++|+.+|+|++|||||.|||++|+|++|.|+++|++|+|.|.+.+..
T Consensus 588 hpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~ 667 (721)
T KOG0465|consen 588 HPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSS 667 (721)
T ss_pred CcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHH
Q 004038 718 PGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 771 (777)
Q Consensus 718 ~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~ 771 (777)
+ +.++|+|.+||.+||||+++|||+|+|+|.|+|+|++|+++|.+.|++++.+
T Consensus 668 ~-~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 668 E-DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred C-ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhcc
Confidence 6 8899999999999999999999999999999999999999999999998764
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-145 Score=1251.10 Aligned_cols=686 Identities=64% Similarity=1.047 Sum_probs=659.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~ 165 (777)
.+++|||+|+||.|||||||+++|++.+|.+++.|+++.|++++||++.|++|||||+++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.||..++.++++.+|++|+|+||.+|+++||+.+|+++.++++|+++|+|||||.++++..++++++.+|+.++.++|+|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHH
Q 004038 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (777)
Q Consensus 246 i~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l 325 (777)
|+.++.|.|++|++.++++.|.. |..+...++|++..+...++|..++|.+++.||++||+|++|..++.+++++.+
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999995 444444788999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCce
Q 004038 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (777)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~ 405 (777)
++.++.+.+.|++|+||.+|.|++.|||+|++++|+|.+.+...+...+.......+.++.++|++++|||+..|++.|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999998777653322222333466779999999999999999999
Q ss_pred EEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCCC
Q 004038 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (777)
Q Consensus 406 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~ 485 (777)
++|+|||||+|++||.|+|...++++||.+|+.|+|++++++++++||||+++.||+++.+|||||+...+..++.+.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988767889999999
Q ss_pred CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEe
Q 004038 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (777)
Q Consensus 486 ~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrE 565 (777)
+||++++|+|++++|++||.+||++|++|||+|+++.|+||||++|+|||||||||+++||+++||+++++++|+|+|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEE
Q 004038 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 645 (777)
Q Consensus 566 ti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v 645 (777)
||.+.+...++|++|+||++||+++.++++|+++|.++.|.+++.++.+|++|+++|++||++++++|||+||||+||+|
T Consensus 484 Ti~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv 563 (697)
T COG0480 484 TIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKV 563 (697)
T ss_pred eecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCC-CeEEE
Q 004038 646 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVV 724 (777)
Q Consensus 646 ~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g-~~~~i 724 (777)
+|.|++||++||++++|++|+++||++|+++|+|+||||||+|+|++|++|+|+|+++|++|||+|++++..++ ..+.|
T Consensus 564 ~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i 643 (697)
T COG0480 564 TLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVI 643 (697)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999853 55999
Q ss_pred EEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHHhh
Q 004038 725 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEV 775 (777)
Q Consensus 725 ~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~~ 775 (777)
+|.+|++|||||+++|||+|+|+|+|+|+|+||++||.+.+++++++.++.
T Consensus 644 ~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~ 694 (697)
T COG0480 644 KAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKR 694 (697)
T ss_pred EEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999987653
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.5e-134 Score=1190.86 Aligned_cols=689 Identities=67% Similarity=1.092 Sum_probs=655.8
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
.++.+++|||+|+||+|+|||||+|+|++.+|.+.+.|.++.|++++|+.+.|++||+|++.....+.|++++++|||||
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTP 83 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTP 83 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCC
Confidence 34567899999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+++|+||+|+.++++.++++++++.++..+.+.+
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+|++....|.|++|++.+..+.|.....|..+...++|..+.+...++|.+|+|.+++.||++||+||+|++++.++++.
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 99999999999999999999999754457778888899988888899999999999999999999999999999999999
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~ 403 (777)
.++++++.+.++||+|+||++|.|++.|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.+|++.
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999988665433211111234457889999999999999999999
Q ss_pred ceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCC
Q 004038 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 483 (777)
Q Consensus 404 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~ 483 (777)
|+++|+|||||+|++||.|+|.+.+++++|++|+.++|.++.+++++.|||||++.|++++.+||||++.+.+..++++.
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~ 403 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESME 403 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCC
Confidence 99999999999999999999988888899999999999999999999999999999999999999999887777788888
Q ss_pred CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeE
Q 004038 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 563 (777)
Q Consensus 484 ~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 563 (777)
+|.|+++++|+|.++.|.+||.+||++|++|||+|+|..|++|||++|+|||||||||+++||+++|++++++++|+|+|
T Consensus 404 ~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~y 483 (693)
T PRK00007 404 FPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAY 483 (693)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeE
Q 004038 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 643 (777)
Q Consensus 564 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 643 (777)
||||.+.++..++|++|+||++||++|+++++|++++.|+.|++++.++.+|++|++||++||++|+++||||||||+||
T Consensus 484 rETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v 563 (693)
T PRK00007 484 RETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDV 563 (693)
T ss_pred eecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeE
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEE
Q 004038 644 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 723 (777)
Q Consensus 644 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~ 723 (777)
+|+|+|+.+|++|+++++|++|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.++++.+ +.+.
T Consensus 564 ~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~ 642 (693)
T PRK00007 564 KVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG-GAKV 642 (693)
T ss_pred EEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC-CcEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766 5789
Q ss_pred EEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHH
Q 004038 724 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773 (777)
Q Consensus 724 i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 773 (777)
|+|.+|++|+|||.++||++|+|+|+|+|+|+||++||++.+++|++++.
T Consensus 643 i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 643 IRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred EEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998864
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2.8e-133 Score=1185.08 Aligned_cols=687 Identities=68% Similarity=1.099 Sum_probs=655.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
++.+++|||+|+||+|+|||||+++|++.+|.+.+.|.++.|++++|+.+.|++||+|++.....+.|++++++||||||
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG 82 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPG 82 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCC
Confidence 34678999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
|.+|..++.++++.+|++|+|||+.+|++.|++.+|+++.+.++|+++++||+|+.++++.+.++++++.++..+.+.++
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 162 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQL 162 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
|++....|.|++|++.+..+.|.....|..+...++|..+.+...++|..|+|.+++.||++||+||+++.++.++++..
T Consensus 163 Pis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~ 242 (691)
T PRK12739 163 PIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAA 242 (691)
T ss_pred cccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999997654566778889999998889999999999999999999999999999999999999
Q ss_pred HHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCc
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G 404 (777)
+++.+..+.++||+|+||++|.|++.|||+|++++|+|.+++..++.... ......+.|++++|++++|||+.+|++.|
T Consensus 243 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~G 321 (691)
T PRK12739 243 IRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPD-TEEEIERPASDDEPFAALAFKIMTDPFVG 321 (691)
T ss_pred HHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCC-CCcceeeccCCCCCeEEEEEEeeeCCCCC
Confidence 99999999999999999999999999999999999999987654432211 11345578899999999999999999999
Q ss_pred eEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCC
Q 004038 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (777)
Q Consensus 405 ~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 484 (777)
+++|+|||||+|++||.|+|...+++++|++|+.++|++..+++++.||||++|.|++++.+||||++.+.+..++++.+
T Consensus 322 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~ 401 (691)
T PRK12739 322 RLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEF 401 (691)
T ss_pred eEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCC
Confidence 99999999999999999999998889999999999999999999999999999999999999999998877778888999
Q ss_pred CCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEE
Q 004038 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564 (777)
Q Consensus 485 ~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yr 564 (777)
|+|+++++|+|.+++|++||.+||++|+++||+|+|++|++|||++|+||||||||++++||+++|++++++++|+|+||
T Consensus 402 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yr 481 (691)
T PRK12739 402 PEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 481 (691)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEE
Q 004038 565 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVR 644 (777)
Q Consensus 565 Eti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~ 644 (777)
|||.+.++..++|++|+||++||++++++++|+++|.|+.|.+++.++.+|++|++||++||+||+++||||||||+||+
T Consensus 482 Eti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~ 561 (691)
T PRK12739 482 ETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVK 561 (691)
T ss_pred eccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEE
Q 004038 645 AALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVV 724 (777)
Q Consensus 645 v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i 724 (777)
|+|+|+.+|++|+++++|++|+++||++|+++|.|+||||||+|||+||++|+|+||++|++|||+|++++..+ +.+.|
T Consensus 562 v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~i 640 (691)
T PRK12739 562 ATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARG-GAQIV 640 (691)
T ss_pred EEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccC-CcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 56789
Q ss_pred EEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHH
Q 004038 725 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773 (777)
Q Consensus 725 ~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 773 (777)
+|.+|++|+|||+++||++|+|+|+|+|+|+||++||++.+++|+++..
T Consensus 641 ~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (691)
T PRK12739 641 KAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRK 689 (691)
T ss_pred EEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998864
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4.5e-132 Score=1175.64 Aligned_cols=686 Identities=62% Similarity=1.017 Sum_probs=654.1
Q ss_pred ccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeC
Q 004038 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 83 ~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
..++.+++|||+|+||+|+|||||+|+|++.+|.+.+.+.+++|++++|+.+.|+++|+|++.....+.|++++++||||
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 34567889999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
|||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+++.+.++|+++|+||+|+.++++.+++++|++.++....+.
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 162 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPI 162 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
++|++...+|.|++|++.+..++|..+ .++.+...++++++.+.+.++|+.|+|.+++.||++||+||+|+.++.++++
T Consensus 163 ~ipis~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 163 QLPIGAEDNFIGVIDLVEMKAYFFNGD-KGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EeccccCCCceEEEECccceEEecccC-CCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 999999999999999999999999753 6888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~ 402 (777)
+.++++++.+.++||++|||++|.|+++|||+|++++|+|.+++...+... +........|++++|++++|||+.+|++
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 320 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP-DTEKEIERKASDDEPFSALAFKVATDPF 320 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCC-CCCceeeecCCCCCceEEEEEEeeecCC
Confidence 999999999999999999999999999999999999999987655433211 1122345788999999999999999999
Q ss_pred CceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccC
Q 004038 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERM 482 (777)
Q Consensus 403 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~ 482 (777)
.|+++|+|||||+|+.||.|+|...+++++|++|+.++|++..+++++.|||||++.|++++.+||||++.+....++++
T Consensus 321 ~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~ 400 (689)
T TIGR00484 321 VGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERM 400 (689)
T ss_pred CCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999988877788888
Q ss_pred CCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeee
Q 004038 483 DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVN 562 (777)
Q Consensus 483 ~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~ 562 (777)
.+|+|+++++|+|.++.|.+||.+||++|+++||+|+|++|++|||++|+|||||||||+++||+++|++++++++|+|+
T Consensus 401 ~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~ 480 (689)
T TIGR00484 401 EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVA 480 (689)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceee
Q 004038 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 642 (777)
Q Consensus 563 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 642 (777)
|||||.+.++..++|++|+||++||++|+++++|++++ |+.|.+++.++.+|++|++||++||+||+++||||||||+|
T Consensus 481 yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~ 559 (689)
T TIGR00484 481 YRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVD 559 (689)
T ss_pred EeecccCccccccccccccCCCCceEEEEEEEEECCCC-CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceee
Confidence 99999999988899999999999999999999999875 99999999999999999999999999999999999999999
Q ss_pred EEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeE
Q 004038 643 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLK 722 (777)
Q Consensus 643 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~ 722 (777)
|+|+|+++.+|++||++++|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.++++.+ +.+
T Consensus 560 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~-~~~ 638 (689)
T TIGR00484 560 IKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG-NVQ 638 (689)
T ss_pred EEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC-CcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998766 679
Q ss_pred EEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHH
Q 004038 723 VVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 772 (777)
Q Consensus 723 ~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 772 (777)
.|+|.+|++|+|||+++||++|+|+|+|+|+|+||++||++++++|++++
T Consensus 639 ~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 639 KIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred EEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999875
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.9e-128 Score=1147.79 Aligned_cols=683 Identities=53% Similarity=0.922 Sum_probs=649.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+.+++|||+|+||.|||||||+++|++.+|.+...+.++.|++.+|+.+.|+++|+|+..+...+.|+++.++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 55789999999999999999999999999998888889889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.+|..++..+++.+|++++|+|+++++..++..+|+.+...++|+++|+||+|+.++++.+++++|++.|+..+.++++|
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHH
Q 004038 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (777)
Q Consensus 246 i~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l 325 (777)
++.+..|.|++|++.++.+.|.....+..+...++|....+...+++.+|+|.+++.||+++|+||++..++.++++..+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999976544666777889998888899999999999999999999999999999999999999
Q ss_pred HhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCce
Q 004038 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (777)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~ 405 (777)
++++..+.++|||||||++|.|++.|||+|++++|+|.+++..+... +........|++++|++++|||+.++++.|+
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 321 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAGK 321 (687)
T ss_pred HHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCce
Confidence 99999999999999999999999999999999999998765443221 1111234678999999999999999999999
Q ss_pred EEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCCC
Q 004038 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (777)
Q Consensus 406 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~ 485 (777)
++|+|||||+|++||.|++.+.++.++|++|+.++|.++++++++.||||+++.|++++.+||||++......++++.+|
T Consensus 322 i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~ 401 (687)
T PRK13351 322 LTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFP 401 (687)
T ss_pred EEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999988766777888899
Q ss_pred CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEe
Q 004038 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (777)
Q Consensus 486 ~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrE 565 (777)
+|+++++|+|.+++|.++|.+||++|++|||+|+++.|+||||++|+||||||||++++||+++|++++++++|+|+|||
T Consensus 402 ~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~E 481 (687)
T PRK13351 402 EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRE 481 (687)
T ss_pred CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEE
Q 004038 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 645 (777)
Q Consensus 566 ti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v 645 (777)
||.+.++..++|++++|+++||++|+++++|+++++|+.|.+.+.++.+|++|++||++||++|+++||||||||+||+|
T Consensus 482 ti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v 561 (687)
T PRK13351 482 TIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRV 561 (687)
T ss_pred eccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEE
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEE
Q 004038 646 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVD 725 (777)
Q Consensus 646 ~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~ 725 (777)
+|+++.+|+++|++++|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|++++..+++...|+
T Consensus 562 ~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~ 641 (687)
T PRK13351 562 TVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVK 641 (687)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998664555599
Q ss_pred EEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHH
Q 004038 726 ALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAA 770 (777)
Q Consensus 726 a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 770 (777)
|.+|++|+|||+++||++|+|+|+|+|+|+||++||++++++|+.
T Consensus 642 a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 642 AEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999874
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.8e-121 Score=1086.80 Aligned_cols=668 Identities=58% Similarity=0.945 Sum_probs=634.9
Q ss_pred EeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHH
Q 004038 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (777)
Q Consensus 96 iG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 175 (777)
+||+|||||||+++|++.+|.+...|+++.|++++|+.+.|++||+|+......+.|+++.++|||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999999998889998899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCCCCCceee
Q 004038 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255 (777)
Q Consensus 176 l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~ 255 (777)
++.+|++|+|+|++.+...++..+|+.+...++|+++|+||+|+...++.++++++++.++....+.++|+..+..|.|+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcce
Q 004038 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 335 (777)
Q Consensus 256 id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~ 335 (777)
+|++.++.+.|+. |..+...++|+...+...++|..|+|.+++.||+++++||++..++.++++..+++.++.+.++
T Consensus 161 id~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYDE---GGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEecC---CCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999982 5566777888888888888999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeee
Q 004038 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415 (777)
Q Consensus 336 Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~ 415 (777)
|||++||++|.|++.|||+|++++|+|.+++...+.. ........|++++|++++|||+.++++.|+++|+|||||+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~---~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGED---GEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCCC---CccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 9999999999999999999999999998755422111 1122345788999999999999999999999999999999
Q ss_pred ecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCCCCceeEEEEEe
Q 004038 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495 (777)
Q Consensus 416 l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pvv~~aiep 495 (777)
|++||.|++.+++++++|++|+.++|++.++++++.||||+++.|++++.+||||++...+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999998888899999999999999999999999999999999999999999877777888889999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEeeeeccceeee
Q 004038 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKY 575 (777)
Q Consensus 496 ~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~ 575 (777)
++++|.++|.++|++|+++||+|++..|++|||++|+|+|||||||+++||+++|++++.+++|+|+|||||.+.++..+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~ 474 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHG 474 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCC
Q 004038 576 VHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV 655 (777)
Q Consensus 576 ~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~ 655 (777)
+|++++||+++|++|+++++|++.+.|+.|.+++.++.+|++|+++|++||++|+++||||||||+||+|+|+++.+|.+
T Consensus 475 ~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 475 RHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred eeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhc
Q 004038 656 DSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQ 735 (777)
Q Consensus 656 ~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g 735 (777)
+|++++|+.|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|++++..+++ +.|+|.+|++|+||
T Consensus 555 ~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~i~a~~P~~e~~g 633 (668)
T PRK12740 555 DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG-DVVRAEVPLAEMFG 633 (668)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC-EEEEEEcCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999977644 99999999999999
Q ss_pred hHHHhhccCCceEEEEEEeCccccCCchHHHHHHH
Q 004038 736 YVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAA 770 (777)
Q Consensus 736 ~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 770 (777)
|+++||++|+|+|+|+++|+||++||+++++++++
T Consensus 634 ~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~~ 668 (668)
T PRK12740 634 YATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVIA 668 (668)
T ss_pred hHHHHHHhcCCeEEEEEEecccccCCHHHHHHHhC
Confidence 99999999999999999999999999999988863
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.2e-117 Score=1062.37 Aligned_cols=665 Identities=28% Similarity=0.403 Sum_probs=571.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec------------
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------ 153 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------ 153 (777)
.++++|||+|+||+|||||||+++|++.+|.+... ...+++++|+.+.|++||+|+.++..++.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 46789999999999999999999999999987653 3445677999999999999999999999984
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC-------C-
Q 004038 154 ----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G- 221 (777)
Q Consensus 154 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~-------~- 221 (777)
++.+||||||||.||..++..+++.+|++|+|||+.+|++.||+.+|+++...++|+++|+||||+. .
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~ 172 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ---cchHhHHHHHH---HHhCCCce-eEEe-ccCCC----------------------CCceeeeecccceEE---EecC
Q 004038 222 ---ANFFRTRDMIV---TNLGAKPL-VVQL-PVGAE----------------------DNFKGVVDLVKMKAI---IWSG 268 (777)
Q Consensus 222 ---~~~~~~~~~i~---~~l~~~~~-~~~~-pi~~~----------------------~~~~g~id~~~~~~~---~~~~ 268 (777)
+++++++++|+ ..++.... ++++ |++.+ .+|.+.+|++..+.| +|+.
T Consensus 173 ~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~ 252 (843)
T PLN00116 173 EAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcC
Confidence 67888999998 22321111 2333 55542 233334444443333 4543
Q ss_pred cCCCceeeecc--ccHh---HHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHHHHHHhhhhcCcceeEeecc
Q 004038 269 EELGAKFAYED--IPAN---LQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCGS 341 (777)
Q Consensus 269 ~~~g~~~~~~~--~~~~---~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~~~~~l~~~~~~~~~~Pv~~~S 341 (777)
. +..+...+ .+.. +.+.+.+.+..|+|.+++.|+++|++|+++ ..++.++++. +++.++...+.|+|++|
T Consensus 253 ~--~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s 329 (843)
T PLN00116 253 A--TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS 329 (843)
T ss_pred C--CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh
Confidence 2 33344444 2322 222334578999999999999999999997 5799999988 99999999999999876
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCce-EEEEEEEeee
Q 004038 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGT 415 (777)
Q Consensus 342 a~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~-l~~~RV~sG~ 415 (777)
+.|||+|++++|+|.+++..+.. +.+++.......|++++|++++|||+..+++.|. ++|+|||||+
T Consensus 330 -------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGt 402 (843)
T PLN00116 330 -------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGT 402 (843)
T ss_pred -------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeee
Confidence 89999999999999875432210 1011222456789999999999999999888887 9999999999
Q ss_pred ecCCCeEE----eCCCCce-----eecceeEEeccCceeecceeecCCEEEEcCCCcccc-cceeccCC--CccccccCC
Q 004038 416 LSAGSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERMD 483 (777)
Q Consensus 416 l~~g~~v~----~~~~~~~-----~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-GdtL~~~~--~~~~l~~~~ 483 (777)
|++||.|+ |...+++ ++|++|+.++|++.++|+++.|||||+|.|++++.+ ||||++.. .+..++++.
T Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~ 482 (843)
T PLN00116 403 VATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMK 482 (843)
T ss_pred ecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccc
Confidence 99999998 4444433 589999999999999999999999999999998655 99999876 567778888
Q ss_pred CC-CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc--CcEEEEeCCe
Q 004038 484 FP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KVEANVGAPQ 560 (777)
Q Consensus 484 ~~-~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~--~v~v~~~~p~ 560 (777)
+| +|+++++|||.+++|++||.+||++|++|||+|+++. +||||++|+|||||||||+++||+++| ++++++++|+
T Consensus 483 ~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~ 561 (843)
T PLN00116 483 FSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPV 561 (843)
T ss_pred cCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCe
Confidence 88 9999999999999999999999999999999999965 899999999999999999999999999 9999999999
Q ss_pred eeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCC----------------------------------------
Q 004038 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG---------------------------------------- 600 (777)
Q Consensus 561 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g---------------------------------------- 600 (777)
|+|||||.++++..+++ ++ .++|++|+++++|++++
T Consensus 562 V~yrETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
T PLN00116 562 VSFRETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCF 637 (843)
T ss_pred EEEEecccccccCcEEE-ec---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeee
Confidence 99999999998877763 34 57889999999999765
Q ss_pred -----CCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccC--CCCCHHHHHHHHHHHHHHH
Q 004038 601 -----SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREG 673 (777)
Q Consensus 601 -----~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a 673 (777)
.++.|++++.|..+.++++++|++||++|+++||||||||+||+|+|.|+.+|+ .++.+++|++|+++||++|
T Consensus 638 gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~A 717 (843)
T PLN00116 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYAS 717 (843)
T ss_pred cCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHH
Confidence 128899998887777888899999999999999999999999999999999998 5566789999999999999
Q ss_pred HHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCC-eEEEEEEechhhhhchHHHhhccCCceEEEEE
Q 004038 674 MRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIM 752 (777)
Q Consensus 674 ~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~-~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~ 752 (777)
+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+++ .+.|+|.+|++|||||+++||++|+|+|+|+|
T Consensus 718 l~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~ 797 (843)
T PLN00116 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
T ss_pred HHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEE
Confidence 99999999999999999999999999999999999999999986654 48999999999999999999999999999999
Q ss_pred EeCccccCCchHHHH
Q 004038 753 QLAKFDVVPQHIQNQ 767 (777)
Q Consensus 753 ~f~~y~~v~~~~~~~ 767 (777)
+|+||++||+|+.++
T Consensus 798 ~f~~y~~v~~dp~~~ 812 (843)
T PLN00116 798 VFDHWDMMSSDPLEA 812 (843)
T ss_pred EeceeEECCCCCCCc
Confidence 999999999887653
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3e-116 Score=1052.77 Aligned_cols=658 Identities=29% Similarity=0.465 Sum_probs=573.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecC-CccccchhhhhhcceeEeeeEEEEEec----------Ce
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYWN----------KH 155 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------~~ 155 (777)
.+++|||+|+||+|||||||+++|++.+|.+... ..| ++++|+.+.|++||+|+.++...+.|. ++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPF 92 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCce
Confidence 5789999999999999999999999999987653 333 456999999999999999999998886 67
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC----C-------cch
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------ANF 224 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~----~-------~~~ 224 (777)
.++|+|||||.||..++..+++.+|++|+|||+.+|++.|++.+|+++...++|+++|+||+|+. + +++
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~ 172 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNF 172 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 4 778
Q ss_pred HhHHHHHHHHhC-----------CCceeEEeccCCCC--------Ccee--------eeecccceEE---EecCcCCCce
Q 004038 225 FRTRDMIVTNLG-----------AKPLVVQLPVGAED--------NFKG--------VVDLVKMKAI---IWSGEELGAK 274 (777)
Q Consensus 225 ~~~~~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~g--------~id~~~~~~~---~~~~~~~g~~ 274 (777)
.+++++|+..++ ..+.+.++|++... .|.+ .++.+....| +|+. .+..
T Consensus 173 ~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~--~~~~ 250 (836)
T PTZ00416 173 VKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA--KTKK 250 (836)
T ss_pred HHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC--CCCE
Confidence 999999998775 37788899997765 2333 3444444433 4433 2444
Q ss_pred eeecc-------ccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhc--CCCCCHHHH--HH-HHHhhhhcCcceeEeeccc
Q 004038 275 FAYED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGSA 342 (777)
Q Consensus 275 ~~~~~-------~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--~~~~~~~~~--~~-~l~~~~~~~~~~Pv~~~Sa 342 (777)
+...+ +|..+.+.+.+.+.+|+|.+++.||++|++||+ |.+++++++ .. .+.+.+. +.|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv----- 324 (836)
T PTZ00416 251 WIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA----- 324 (836)
T ss_pred EEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch-----
Confidence 44433 344566778889999999999999999999999 778898884 23 5666666 899998
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCce-EEEEEEEeeee
Q 004038 343 FKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGTL 416 (777)
Q Consensus 343 ~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~-l~~~RV~sG~l 416 (777)
++.|||+|++++|+|.+++..+.. ..+++.....+.|++++|++++|||+..+++.|+ ++|+|||||+|
T Consensus 325 -----~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL 399 (836)
T PTZ00416 325 -----ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTV 399 (836)
T ss_pred -----HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeee
Confidence 699999999999999876543210 1111222346789999999999999999999998 89999999999
Q ss_pred cCCCeEE----eCCCCcee-----ecceeEEeccCceeecceeecCCEEEEcCCCc--ccccceeccCCCccccccCCCC
Q 004038 417 SAGSYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDFP 485 (777)
Q Consensus 417 ~~g~~v~----~~~~~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~GdtL~~~~~~~~l~~~~~~ 485 (777)
+.||.|+ |...+.++ +|++||.++|++.+++++|.|||||+|.|+++ +++| ||++......+.++.++
T Consensus 400 ~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~ 478 (836)
T PTZ00416 400 ATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYS 478 (836)
T ss_pred cCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccC
Confidence 9999998 44444444 49999999999999999999999999999998 7899 99988777778888886
Q ss_pred -CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CcEEEEeCCeeeE
Q 004038 486 -DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVNY 563 (777)
Q Consensus 486 -~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V~y 563 (777)
+|+++++|+|.+++|++||.++|++|.+|||+|+++. ++|||++|+||||+|||+|++||+++| ++++++++|+|+|
T Consensus 479 ~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~y 557 (836)
T PTZ00416 479 VSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSY 557 (836)
T ss_pred CCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEE
Confidence 9999999999999999999999999999999999976 899999999999999999999999999 8999999999999
Q ss_pred EeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCC------------------------CCcE-----------EEec
Q 004038 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------SGYE-----------FKSE 608 (777)
Q Consensus 564 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g------------------------~g~~-----------f~~~ 608 (777)
||||.+.++..+++++++++ ++|+++++|++++ .++. |..+
T Consensus 558 rETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~ 633 (836)
T PTZ00416 558 RETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPE 633 (836)
T ss_pred EEEecccccceEEEECCCCC----eeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCC
Confidence 99999999999999998765 3899999999765 1444 5556
Q ss_pred ccCCcC------ccccHH----HHHHHHHHHHHcCcccCCceeeEEEEEeeccccC--CCCCHHHHHHHHHHHHHHHHHH
Q 004038 609 IKGGAV------PKEYIP----GVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREGMRK 676 (777)
Q Consensus 609 ~~~~~i------~~~~~~----~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~~ 676 (777)
+.|+.+ +++|++ +|++||+||+++||||||||+||+|+|+++.+|+ .++.+++|++|+++||++|+++
T Consensus 634 ~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~ 713 (836)
T PTZ00416 634 NKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELT 713 (836)
T ss_pred CCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhh
Confidence 666665 555555 9999999999999999999999999999999998 7888999999999999999999
Q ss_pred cCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeC
Q 004038 677 AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLA 755 (777)
Q Consensus 677 a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~ 755 (777)
|+|+||||||+|||+||++++|+|+++|++|||+|+++++.+|+. ++|+|.+|++|+|||+++||++|+|+|+|+|+|+
T Consensus 714 a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~ 793 (836)
T PTZ00416 714 ASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFD 793 (836)
T ss_pred CCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEec
Confidence 999999999999999999999999999999999999999876554 8999999999999999999999999999999999
Q ss_pred ccccCCchHHH
Q 004038 756 KFDVVPQHIQN 766 (777)
Q Consensus 756 ~y~~v~~~~~~ 766 (777)
||++||+++++
T Consensus 794 ~y~~vp~dp~~ 804 (836)
T PTZ00416 794 HWQVVPGDPLE 804 (836)
T ss_pred cEEECCCCCCC
Confidence 99999988754
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.3e-113 Score=1019.12 Aligned_cols=633 Identities=32% Similarity=0.473 Sum_probs=550.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEE----EEecCeEEEEEe
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT----TYWNKHRINIID 161 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~----~~~~~~~i~liD 161 (777)
..+++|||+++||.|||||||+++|++.+|.+.+. ...+++.+|+.+.|++||+|+..+..+ +.|++++++|||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 34678999999999999999999999999987663 233456799999999999999988766 567889999999
Q ss_pred CCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCcee
Q 004038 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 162 TPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 241 (777)
||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|.++|+||+|+..+++..+.+++++.|+..+..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred EEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhc---------
Q 004038 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE--------- 312 (777)
Q Consensus 242 ~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--------- 312 (777)
++.++... .+++ ++..+++..++.++.+++.|++
T Consensus 173 v~~~~~~~------------------------------~~~~-------~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~ 215 (720)
T TIGR00490 173 VNKLIKAM------------------------------APEE-------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMK 215 (720)
T ss_pred HHhhhhcc------------------------------CCHH-------HhhceEechhhCCHHHHhhhhcccccchhHh
Confidence 33332110 0000 0011223333445555555554
Q ss_pred CCCCCHHHHHHHHHhhhhcC--cceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccC
Q 004038 313 GNEPDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAAS 385 (777)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~--~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~ 385 (777)
+..++.+++.+.+....... .++|| ++.|||+|++++|+|.+++..+.. ..++........|+
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d 285 (720)
T TIGR00490 216 KTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCD 285 (720)
T ss_pred hcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCC
Confidence 44455566655555444333 57888 489999999999999875432211 11112223567889
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCccc
Q 004038 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTI 465 (777)
Q Consensus 386 ~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 465 (777)
+++|++++|||+..+++.|+++|+|||||+|++||.|++.+.+++++|++|+.++|.+.++++++.|||||+|.|++++.
T Consensus 286 ~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 365 (720)
T TIGR00490 286 PKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAV 365 (720)
T ss_pred CCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCc-cccccC-CCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHH
Q 004038 466 TGETLCDADHP-ILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIV 543 (777)
Q Consensus 466 ~GdtL~~~~~~-~~l~~~-~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~ 543 (777)
+|||||+.+.+ ..++++ .+|+|+++++|+|++++|.++|.++|++|++|||+|++++|++|||++|+||||||||+++
T Consensus 366 ~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~ 445 (720)
T TIGR00490 366 AGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIV 445 (720)
T ss_pred cCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHH
Confidence 99999987654 345665 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcEEEEeCCeeeEEeeeeccce-eeeEeeeccCCCCceEEEEEEEeeccCC----------------------
Q 004038 544 DRLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAG---------------------- 600 (777)
Q Consensus 544 ~rL~~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~~P~~~g---------------------- 600 (777)
+||+++|++++++++|+|+|||||.+.++ .+++| .++|++|+++++|+++|
T Consensus 446 ~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~ 519 (720)
T TIGR00490 446 EKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRR 519 (720)
T ss_pred HHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHH
Confidence 99999999999999999999999999987 55554 34789999999999887
Q ss_pred -------------------CCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccC--CCCCH
Q 004038 601 -------------------SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSV 659 (777)
Q Consensus 601 -------------------~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~ 659 (777)
.|+.|++++.|+.+|++|++||++||+||+++||||||||+||+|+|+|+++|+ +||++
T Consensus 520 ~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~ 599 (720)
T TIGR00490 520 LLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGP 599 (720)
T ss_pred HHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCcc
Confidence 789999999999999999999999999999999999999999999999999994 88999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHH
Q 004038 660 LAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSA 739 (777)
Q Consensus 660 ~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~ 739 (777)
++|++|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+ +.++|+|++|++|||||+++
T Consensus 600 ~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~I~A~vP~~e~fgy~~~ 678 (720)
T TIGR00490 600 AQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG-DMVTIIAKAPVAEMFGFAGA 678 (720)
T ss_pred chHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC-CcEEEEEEEehHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999988654 67999999999999999999
Q ss_pred hhccCCceEEEEEEeCccccCCchHHHHHHHHHHh
Q 004038 740 LRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 774 (777)
Q Consensus 740 Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~ 774 (777)
||++|+|+|+|+|+|+||++||++.+++++++.++
T Consensus 679 Lrs~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~ 713 (720)
T TIGR00490 679 IRGATSGRCLWSTEHAGFELVPQNLQQEFVMEVRK 713 (720)
T ss_pred HHhhCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988764
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=4.2e-112 Score=1009.05 Aligned_cols=631 Identities=32% Similarity=0.497 Sum_probs=543.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----cCeEEEEEe
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIID 161 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liD 161 (777)
..+++|||+|+||+|||||||+++|++.+|.+.+. ...+++++|+.+.|++||+|+.++..++.| +++.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 35789999999999999999999999999987763 234468899999999999999999998887 478999999
Q ss_pred CCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCcee
Q 004038 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 162 TPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 241 (777)
||||.||..++.++++.+|++|+|||+.+|++.+++.+|+++.+.++|.|+|+||+|+..+++....+++++.++...
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII-- 171 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999998776666656555543310
Q ss_pred EEeccCCCCCceeeeecccce-------------EEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 004038 242 VQLPVGAEDNFKGVVDLVKMK-------------AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (777)
Q Consensus 242 ~~~pi~~~~~~~g~id~~~~~-------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e 308 (777)
..+.++++.+.+. .+.|.+...+|.+.. ..+.+..+++ +++++
T Consensus 172 --------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~---------------~~~~~~~~~~-~~l~e 227 (731)
T PRK07560 172 --------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISV---------------PMMQKTGIKF-KDIID 227 (731)
T ss_pred --------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeH---------------HHHHHhCCCH-HHHHH
Confidence 1122222222211 122333333443332 2334444455 67888
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccc
Q 004038 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERA 383 (777)
Q Consensus 309 ~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~ 383 (777)
.|+++ +.++++ .++|++ +.|||+|++++|+|.+++..+.. ...++.......
T Consensus 228 ~~~~~---~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (731)
T PRK07560 228 YYEKG---KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLN 284 (731)
T ss_pred HHhcC---CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeec
Confidence 88654 234432 237885 78999999999999876542211 111112234567
Q ss_pred cCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCc
Q 004038 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (777)
Q Consensus 384 ~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~ 463 (777)
|++++|++++|||+.+|++.|+++|+|||||+|++||.|++.+.+.+++|++|+.++|++.++++++.|||||+|.|+++
T Consensus 285 ~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~ 364 (731)
T PRK07560 285 CDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKD 364 (731)
T ss_pred cCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccc
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccccceeccCCCccccccCC-CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHH
Q 004038 464 TITGETLCDADHPILLERMD-FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (777)
Q Consensus 464 ~~~GdtL~~~~~~~~l~~~~-~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~ 542 (777)
+.+||||++......++++. +|+|+++++|+|.++.|.+||.++|++|++|||+|++..|++|||++|+||||||||++
T Consensus 365 ~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~ 444 (731)
T PRK07560 365 ARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVI 444 (731)
T ss_pred cccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHH
Confidence 99999999887777788864 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEeCCeeeEEeeeeccce-eeeEeeeccCCCCceEEEEEEEeeccCCC--------------------
Q 004038 543 VDRLKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAGS-------------------- 601 (777)
Q Consensus 543 ~~rL~~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~~P~~~g~-------------------- 601 (777)
++||+++|++++.+++|+|+|||||.+.++ ..++ ++ ++|++|+++++|++++.
T Consensus 445 ~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~ 518 (731)
T PRK07560 445 TYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKI 518 (731)
T ss_pred HHHHHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHH
Confidence 999999999999999999999999999874 3332 22 45899999999998652
Q ss_pred -----------------------CcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeecccc--CCC
Q 004038 602 -----------------------GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH--DVD 656 (777)
Q Consensus 602 -----------------------g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~--~~~ 656 (777)
++.|+|++.|+.+|++|+++|++||+||+++||||||||+||+|+|+|+++| ..+
T Consensus 519 l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~ 598 (731)
T PRK07560 519 LREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIH 598 (731)
T ss_pred HHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccc
Confidence 7899999999999999999999999999999999999999999999999999 467
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhch
Q 004038 657 SSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQY 736 (777)
Q Consensus 657 s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~ 736 (777)
+++++|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|++++..+ +.++|+|.+|++|||||
T Consensus 599 ~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~-~~~~I~a~vP~~e~~gy 677 (731)
T PRK07560 599 RGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG-DMAIIEAEAPVAEMFGF 677 (731)
T ss_pred cccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC-CcEEEEEEEehHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999998754 67999999999999999
Q ss_pred HHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHHh
Q 004038 737 VSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 774 (777)
Q Consensus 737 ~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~ 774 (777)
+++||++|+|+|+|+|+|+||++||++.+++++++.|+
T Consensus 678 ~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~ 715 (731)
T PRK07560 678 AGEIRSATEGRALWSTEFAGFEPVPDSLQLDIVRQIRE 715 (731)
T ss_pred chHHHhhCcCCceEEEEeccceeCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988764
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-112 Score=877.15 Aligned_cols=674 Identities=36% Similarity=0.582 Sum_probs=609.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+..++|||+|++|.++||||.+++++|.+|.+...|.|++|.+++|++..|++||||+.++..++.|+++++|+||||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.||.-++++.+++.|+++.|+|++.|+++||..+|+++.+.++|.+.++||||+..++++..+++|+++||.++..+++|
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc-eeeeecccceEEEec-CcCCCceeeeccc----cHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC-----C
Q 004038 246 VGAEDNF-KGVVDLVKMKAIIWS-GEELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG-----N 314 (777)
Q Consensus 246 i~~~~~~-~g~id~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~-----~ 314 (777)
+++...| +|++|++..+.+.|. .+++|..|...++ +.++.+...+.+.+|++.+++.|+++.+++|++ +
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464|consen 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred ccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccc
Confidence 9999999 899999999888885 3457888876653 456777778889999999999999999999885 5
Q ss_pred CCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 004038 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (777)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (777)
.++.++++..+++.+..+...||+||||.+|.||++|||++.-|+|||.+++.... .-....++++.
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyefl-------------qwykddlcala 339 (753)
T KOG0464|consen 273 KIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFL-------------QWYKDDLCALA 339 (753)
T ss_pred ccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHH-------------hhhhhhHHHHh
Confidence 78999999999999999999999999999999999999999999999998754221 11246689999
Q ss_pred EEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCC
Q 004038 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (777)
Q Consensus 395 ~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (777)
||+.+|+.+|.++|.|||||+++++..|+|.+.+.++.+.++|...+++..+|+++.||+|...+||+.+.||||+...+
T Consensus 340 fkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 340 FKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996421
Q ss_pred ------------------------CccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEE
Q 004038 475 ------------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTV 530 (777)
Q Consensus 475 ------------------------~~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~i 530 (777)
+...+.++++|.||+++.|||.+...++.+..||+.|.+||||+++..|+++||++
T Consensus 420 asa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqti 499 (753)
T KOG0464|consen 420 ASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTI 499 (753)
T ss_pred hhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceE
Confidence 12456789999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCC-----cEE
Q 004038 531 IEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG-----YEF 605 (777)
Q Consensus 531 l~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g-----~~f 605 (777)
++||||||+|++.+||+|+||+++.+++.+|+|||+|.+......+..+..|...+...|.+...|.+..+. +.|
T Consensus 500 l~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkief 579 (753)
T KOG0464|consen 500 LCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEF 579 (753)
T ss_pred EeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEe
Confidence 999999999999999999999999999999999999999877665555555554444445555555444433 334
Q ss_pred Eec-ccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeee
Q 004038 606 KSE-IKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEP 684 (777)
Q Consensus 606 ~~~-~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP 684 (777)
+-. .....+.+--+.||++|+..||.+|||+|+|+++|+++|+..-.|....++.-+..++.+++.+|+++|..+|+||
T Consensus 580 e~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~ep 659 (753)
T KOG0464|consen 580 ELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEP 659 (753)
T ss_pred eccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 321 1111222334899999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eeEEEEEecC-cchhhHHHHHhcCCceeeeeeccCCCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCc
Q 004038 685 IMKVEVVTPE-EHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQ 762 (777)
Q Consensus 685 i~~~eI~~p~-~~~g~V~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~ 762 (777)
+|+++|.+-. +++..|+.+|.+|||++.+++..+.+. ..|.|.+|++|+.||++.||.+|+|.|.|.++|++|+.|.+
T Consensus 660 lm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~ 739 (753)
T KOG0464|consen 660 LMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNE 739 (753)
T ss_pred hhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcCh
Confidence 9999999965 899999999999999999998766444 67999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 004038 763 HIQNQLAAKE 772 (777)
Q Consensus 763 ~~~~~~~~~~ 772 (777)
+.+.+|++.+
T Consensus 740 ~dk~~il~kr 749 (753)
T KOG0464|consen 740 HDKMEILKKR 749 (753)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-101 Score=811.94 Aligned_cols=660 Identities=29% Similarity=0.406 Sum_probs=536.7
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-------------
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 152 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~------------- 152 (777)
...++||+.+|+|++||||||+++|...+|.+... ...+++++|..+.|++|||||+++.+++.+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45789999999999999999999999888877532 223479999999999999999999999876
Q ss_pred ---cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcch----H
Q 004038 153 ---NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF----F 225 (777)
Q Consensus 153 ---~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~----~ 225 (777)
.+..|||||.|||.||+.|+..++|..|++++|||+.+|+..||+.+++++...++..++|+||+||.--++ +
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999864332 2
Q ss_pred hHHHHHHHHhCCCceeEEeccCCCC-Cceeeeeccc-ceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcC
Q 004038 226 RTRDMIVTNLGAKPLVVQLPVGAED-NFKGVVDLVK-MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (777)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~-~~~g~id~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 303 (777)
+..+.+++.... +++-+...+ .--|.+.+.. ...+.|.++.+||.|+...|.+.|..++..-...|+..+|...
T Consensus 173 eLyqtf~R~VE~----vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~ 248 (842)
T KOG0469|consen 173 ELYQTFQRIVEN----VNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDN 248 (842)
T ss_pred HHHHHHHHHHhc----ccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 222222222211 112221111 1223344433 3457788888999999999999998888766777777777511
Q ss_pred --HHHHHHHh------cC----------------------CCCCHHHHHHHHHhhh------------------hcCcce
Q 004038 304 --DEAMESYL------EG----------------------NEPDEETIKKLIRKGT------------------IAGSFV 335 (777)
Q Consensus 304 --d~l~e~~l------~~----------------------~~~~~~~~~~~l~~~~------------------~~~~~~ 335 (777)
+..-.+|- +| .....+|+...+.+.- ....|+
T Consensus 249 ~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wL 328 (842)
T KOG0469|consen 249 FFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWL 328 (842)
T ss_pred ccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhc
Confidence 00000000 00 0112333333333211 123444
Q ss_pred eEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCc-eEEEE
Q 004038 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVG-SLTFV 409 (777)
Q Consensus 336 Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G-~l~~~ 409 (777)
|- -+.||++|+-+||||..++.++.. +.+++.......||+++|+++||+||......| +++||
T Consensus 329 PA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFG 398 (842)
T KOG0469|consen 329 PA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFG 398 (842)
T ss_pred ch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEe
Confidence 53 378999999999999999887622 334455667899999999999999998765554 69999
Q ss_pred EEEeeeecCCCeEEeC----CCCcee-----ecceeEEeccCceeecceeecCCEEEEcCCCc-ccccceeccCCCcccc
Q 004038 410 RVYAGTLSAGSYVLNA----NKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPILL 479 (777)
Q Consensus 410 RV~sG~l~~g~~v~~~----~~~~~~-----ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~~~~~~~~l 479 (777)
|||||++..|+++.+. ..|+++ .|.+...|+|+..++|+.++||+|+++.|+++ +.++.||+..+....+
T Consensus 399 RVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNm 478 (842)
T KOG0469|consen 399 RVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNM 478 (842)
T ss_pred eeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccc
Confidence 9999999999999854 345543 37777889999999999999999999999998 4556688887778888
Q ss_pred ccCCCC-CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CcEEEEe
Q 004038 480 ERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVG 557 (777)
Q Consensus 480 ~~~~~~-~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~ 557 (777)
+.++|+ .||++++||++++.|++||.++|++|++.||.+.+.+ +|+||++|.|.||||||||+++|+++| ++.++.+
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecC
Confidence 888877 8999999999999999999999999999999999999 489999999999999999999999999 6999999
Q ss_pred CCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCC-------------------------------------
Q 004038 558 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------------------- 600 (777)
Q Consensus 558 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g------------------------------------- 600 (777)
+|.|+||||+.+.++.....+ ..+.+.++++..+|++.+
T Consensus 558 dPvVsYrEtvs~~ss~~~lsK----SpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKI 633 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSK----SPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKI 633 (842)
T ss_pred CCeeeeecccccccchhhhcc----CCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhhee
Confidence 999999999998876543222 234456777888887543
Q ss_pred -------C-CcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCCHHH--HHHHHHHHH
Q 004038 601 -------S-GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLA--FQLAARGAF 670 (777)
Q Consensus 601 -------~-g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~--~~~a~~~a~ 670 (777)
. .+.+.+.+++..+.++++++|..||+||.++|||+|+.|++|||.|.|..+|....+... +.+.+|++|
T Consensus 634 WCfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ 713 (842)
T KOG0469|consen 634 WCFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVL 713 (842)
T ss_pred eEeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHH
Confidence 1 144566677777889999999999999999999999999999999999999987666544 457999999
Q ss_pred HHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCe-EEEEEEechhhhhchHHHhhccCCceEE
Q 004038 671 REGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRAS 749 (777)
Q Consensus 671 ~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~ 749 (777)
+.+++.|+|+|+||+|.|||+||++++|.|++.|++|||++.+++...|+. +.|+|++|+.|+|||..+||+.|.|+|.
T Consensus 714 ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAf 793 (842)
T KOG0469|consen 714 YASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAF 793 (842)
T ss_pred HHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccc
Confidence 999999999999999999999999999999999999999999999887665 9999999999999999999999999999
Q ss_pred EEEEeCccccCCchHHH
Q 004038 750 YIMQLAKFDVVPQHIQN 766 (777)
Q Consensus 750 ~~~~f~~y~~v~~~~~~ 766 (777)
.+|.||||+++|+++.+
T Consensus 794 pq~vFdHws~lpgdp~d 810 (842)
T KOG0469|consen 794 PQMVFDHWSILPGDPLD 810 (842)
T ss_pred cceeeeccccCCCCCCC
Confidence 99999999999999865
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=9.1e-84 Score=742.43 Aligned_cols=455 Identities=32% Similarity=0.510 Sum_probs=414.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
+|||+|+||+|||||||+++|++.+|.+...+.++. +++|+.+.|++||+|+.+....+.|++++++|||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 589999999999999999999999998877666554 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 249 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (777)
.++.++++.+|++++|||+.+|+..|++.+|..+...++|+++|+||+|+.++++.++++++.+.|..-
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----------- 147 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----------- 147 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999999999999999998887777777776654320
Q ss_pred CCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 004038 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (777)
Q Consensus 250 ~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~ 329 (777)
|. ++
T Consensus 148 ----------------------g~-----------------------------~~------------------------- 151 (594)
T TIGR01394 148 ----------------------GA-----------------------------DD------------------------- 151 (594)
T ss_pred ----------------------cc-----------------------------cc-------------------------
Confidence 00 00
Q ss_pred hcCcceeEeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 004038 330 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (777)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (777)
....+|++++||++|. |+++||+.|++++|+|.. ++++|++++||++++
T Consensus 152 -e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 152 -EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDY 210 (594)
T ss_pred -ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEe
Confidence 0112589999999996 799999999999999954 247899999999999
Q ss_pred cCCCceEEEEEEEeeeecCCCeEEeCCCC---ceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCc
Q 004038 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (777)
Q Consensus 400 ~~~~G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~ 476 (777)
++++|+++++||++|+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||++.|++++.+|||||+.+.+
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcc
Confidence 99999999999999999999999988753 257899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceeEEEEEeCCC---cCHHH------HHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHH
Q 004038 477 ILLERMDFPDPVIKVAIEPKTK---ADIDK------MANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 547 (777)
Q Consensus 477 ~~l~~~~~~~Pvv~~aiep~~~---~d~~k------L~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~ 547 (777)
.+++++++++|+++++++|++. ++..| |.++|.++.++||+|+++.+++++|++|+|+|||||+|+++||+
T Consensus 291 ~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 370 (594)
T TIGR01394 291 EALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMR 370 (594)
T ss_pred ccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHh
Confidence 9999999999999999999865 33333 99999999999999999999999999999999999999999999
Q ss_pred hhcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHH
Q 004038 548 REFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLE 627 (777)
Q Consensus 548 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~ 627 (777)
|+ |+++.+++|+|+||| |.
T Consensus 371 re-g~e~~~~~P~V~yre-i~----------------------------------------------------------- 389 (594)
T TIGR01394 371 RE-GFELQVGRPQVIYKE-ID----------------------------------------------------------- 389 (594)
T ss_pred cc-CceEEEeCCEEEEEe-CC-----------------------------------------------------------
Confidence 99 999999999999999 52
Q ss_pred HHHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcC
Q 004038 628 ECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSR 707 (777)
Q Consensus 628 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~r 707 (777)
| +||||||+++|.||++|+|+||++|++|
T Consensus 390 -----g----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~R 418 (594)
T TIGR01394 390 -----G----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKR 418 (594)
T ss_pred -----C----------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHh
Confidence 0 5799999999999999999999999999
Q ss_pred CceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHH
Q 004038 708 RGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQN 766 (777)
Q Consensus 708 rg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~ 766 (777)
||++++++..++++..|+|.+|+++|+||.++||++|+|+|+|+++|+||+++|++++.
T Consensus 419 rG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 419 KGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred CCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 99999999866578999999999999999999999999999999999999999987654
No 15
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-84 Score=704.35 Aligned_cols=656 Identities=24% Similarity=0.351 Sum_probs=506.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-----cCeEEEEE
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINII 160 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~li 160 (777)
.+..+|||+++||-+||||+|.+.|..+++-.-. ...+..-+++|....|++||++|++...++.. +.+.+|++
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 4578999999999999999999999877763211 11122347899999999999999999988765 46789999
Q ss_pred eCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcch-----------HhHHH
Q 004038 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTRD 229 (777)
Q Consensus 161 DTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~-----------~~~~~ 229 (777)
|||||.+|..|+..+++.+|++++|||+.+|+.-+++.+++.+-+.++|+++|+||+||+..++ .-+++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999875332 22344
Q ss_pred HHHHHhC---CCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHH-----------------
Q 004038 230 MIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ----------------- 289 (777)
Q Consensus 230 ~i~~~l~---~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------- 289 (777)
+|+..+. ....++.-|+ ..+++|.++.+||+|+..+|..-|.+...
T Consensus 283 ~iN~~is~~s~~~~~~~sP~--------------~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf 348 (971)
T KOG0468|consen 283 EINNLISTFSKDDNPVVSPI--------------LGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYF 348 (971)
T ss_pred Hhcchhhhcccccccccccc--------------cCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccc
Confidence 4443221 1111122221 33567888888999988877655443311
Q ss_pred ------------------HHHHHHHHHHHh-------cCHHHHHHHhc--CCCCCHHHHHHHHHhhhhcCcceeEeeccc
Q 004038 290 ------------------EYRSQMIETIVE-------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSA 342 (777)
Q Consensus 290 ------------------~~~~~l~e~~~~-------~dd~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa 342 (777)
.+-+.++|.+.. .-++-+...+. |..++.++++-..+...+ .++.-|++.
T Consensus 349 ~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~- 425 (971)
T KOG0468|consen 349 HSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGI- 425 (971)
T ss_pred cccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccc-
Confidence 112334443322 11222222222 234555554322221110 000011121
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEee-cCCCceEEEEEEEeeee
Q 004038 343 FKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMS-DPFVGSLTFVRVYAGTL 416 (777)
Q Consensus 343 ~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~-~~~~G~l~~~RV~sG~l 416 (777)
-..+.|++++|+|+|.+....+.. +.+......+..|++.+|+++.+.|++. +...-+.+|+||+||++
T Consensus 426 -----~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~ 500 (971)
T KOG0468|consen 426 -----ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQV 500 (971)
T ss_pred -----hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecce
Confidence 134899999999999985443211 2222334566889999999999999986 34456799999999999
Q ss_pred cCCCeEEeCCCC---------ceeecceeEEeccCceeecceeecCCEEEEcCCCc-ccccceeccC---CCccccccCC
Q 004038 417 SAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILLERMD 483 (777)
Q Consensus 417 ~~g~~v~~~~~~---------~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~~~---~~~~~l~~~~ 483 (777)
+.|+.|.....+ ....|++++...++++.+|++|+||.++.|.|+++ ..+..|+++. .+...++++.
T Consensus 501 ~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~ 580 (971)
T KOG0468|consen 501 VTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLK 580 (971)
T ss_pred eecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchh
Confidence 999999865433 22458899999999999999999999999999987 5668888764 3456778887
Q ss_pred C-CCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CcEEEEeCCee
Q 004038 484 F-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQV 561 (777)
Q Consensus 484 ~-~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V 561 (777)
+ +.||++++++|.++++++||.++|++.++.+|.+..++ ||+||++|.|.|||+|++++.+||.-| .+++++++|.|
T Consensus 581 ~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv 659 (971)
T KOG0468|consen 581 FNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVV 659 (971)
T ss_pred cCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCcee
Confidence 4 59999999999999999999999999999999999988 789999999999999999999999999 59999999999
Q ss_pred eEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCC-----------------------------------------
Q 004038 562 NYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG----------------------------------------- 600 (777)
Q Consensus 562 ~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g----------------------------------------- 600 (777)
.|+||+.++++..+..... ..-..+.+..||++.|
T Consensus 660 ~F~Et~vetssikcfaetp----nkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFg 735 (971)
T KOG0468|consen 660 RFCETVVETSSIKCFAETP----NKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFG 735 (971)
T ss_pred EEEEeeecccchhhhccCC----CccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccC
Confidence 9999999977654422211 1113455556665432
Q ss_pred ---CC-cEEEecccCCcCc----cccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCCH--HHHHHHHHHHH
Q 004038 601 ---SG-YEFKSEIKGGAVP----KEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSV--LAFQLAARGAF 670 (777)
Q Consensus 601 ---~g-~~f~~~~~~~~i~----~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~--~~~~~a~~~a~ 670 (777)
.| +++.|++....+. ..++++|.+||+|++++||||++|+++|+|+|.|+.......+. ..+.+++|+++
T Consensus 736 pd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~ 815 (971)
T KOG0468|consen 736 PDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVA 815 (971)
T ss_pred CCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHH
Confidence 11 3344444333333 34788999999999999999999999999999998876543333 34668999999
Q ss_pred HHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCe-EEEEEEechhhhhchHHHhhccCCceEE
Q 004038 671 REGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRAS 749 (777)
Q Consensus 671 ~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~ 749 (777)
|.|++.|.|+||||+|.|||++|.+++..|+..|++|||+|....+..|+. .+|+|++|+.|+|||.++||-.|+|+|.
T Consensus 816 YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~ 895 (971)
T KOG0468|consen 816 YSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAF 895 (971)
T ss_pred HHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhH
Confidence 999999999999999999999999999999999999999999999888776 9999999999999999999999999999
Q ss_pred EEEEeCccccCCchHHHHHH
Q 004038 750 YIMQLAKFDVVPQHIQNQLA 769 (777)
Q Consensus 750 ~~~~f~~y~~v~~~~~~~~~ 769 (777)
+++.|+||++||++++++-|
T Consensus 896 C~~vF~HW~~VPGDpLDKsi 915 (971)
T KOG0468|consen 896 CLSVFDHWRIVPGDPLDKSI 915 (971)
T ss_pred HHHhhhhcccCCCCcccccc
Confidence 99999999999999998765
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=7.3e-82 Score=725.01 Aligned_cols=455 Identities=30% Similarity=0.478 Sum_probs=411.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+++|||+|+||+|||||||+++|++.+|.+...+... .+++|+.+.|+++|+|+......+.|+++.+++||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ--ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc--eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 5789999999999999999999999888776544333 38999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
|..++..+++.+|++|+|+|+.+|+..|++.+|..+...++|.++|+||+|+.++++.++++++.+.|..-
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------- 151 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL--------- 151 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999988888888887655320
Q ss_pred CCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004038 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (777)
Q Consensus 248 ~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~ 327 (777)
+. .+
T Consensus 152 ---------~~--------------------------------------------~~----------------------- 155 (607)
T PRK10218 152 ---------DA--------------------------------------------TD----------------------- 155 (607)
T ss_pred ---------Cc--------------------------------------------cc-----------------------
Confidence 00 00
Q ss_pred hhhcCcceeEeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEE
Q 004038 328 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (777)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 397 (777)
...-+||+++||++|. |+.+||++|++++|+|.. ++++||+++|||+
T Consensus 156 ---~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~ 212 (607)
T PRK10218 156 ---EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQL 212 (607)
T ss_pred ---cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 0112689999999998 689999999999999953 2478999999999
Q ss_pred eecCCCceEEEEEEEeeeecCCCeEEeCCC-Cc--eeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCC
Q 004038 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (777)
Q Consensus 398 ~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~-~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (777)
++++++|+++++||++|+|++||.|++.+. ++ +++|++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+
T Consensus 213 ~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 213 DYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCC
Confidence 999999999999999999999999998765 43 588999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCCceeEEEEEeCC---CcCHHHHHH---HHHHHHh---cCCeeEEEEcCCCCeEEEEecChhhHHHHHHH
Q 004038 475 HPILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLAQ---EDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 545 (777)
Q Consensus 475 ~~~~l~~~~~~~Pvv~~aiep~~---~~d~~kL~~---aL~~l~~---eDPsl~v~~~~etge~il~g~GelHLei~~~r 545 (777)
.+..++++++|+|++++++.|++ .+|..|+.. +|.+|.+ +||+|+++.+++|+|++|+|+|||||+|+++|
T Consensus 293 ~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~ 372 (607)
T PRK10218 293 NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 372 (607)
T ss_pred CcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHH
Confidence 88889999999999999999999 779899854 5555555 99999999999999999999999999999999
Q ss_pred HHhhcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHH
Q 004038 546 LKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKG 625 (777)
Q Consensus 546 L~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g 625 (777)
|+|+ |+++.+++|+|+|||| + +.
T Consensus 373 lrre-g~e~~~~~P~V~yret-------~----------g~--------------------------------------- 395 (607)
T PRK10218 373 MRRE-GFELAVSRPKVIFREI-------D----------GR--------------------------------------- 395 (607)
T ss_pred HHhC-CceEEEeCCEEEEEEE-------C----------CE---------------------------------------
Confidence 9999 9999999999999998 0 10
Q ss_pred HHHHHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHh
Q 004038 626 LEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLN 705 (777)
Q Consensus 626 ~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~ 705 (777)
.||||++++|.||++|+|+||++|+
T Consensus 396 -------------------------------------------------------klEPi~~v~i~vP~e~~G~V~~~l~ 420 (607)
T PRK10218 396 -------------------------------------------------------KQEPYENVTLDVEEQHQGSVMQALG 420 (607)
T ss_pred -------------------------------------------------------EeCCeEEEEEEechhhHHHHHHHHH
Confidence 1599999999999999999999999
Q ss_pred cCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC-chH
Q 004038 706 SRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP-QHI 764 (777)
Q Consensus 706 ~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~-~~~ 764 (777)
+|||++++++..++++..|+|.+|+++++||.++|+++|+|+|.|+++|+||+++| +++
T Consensus 421 ~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 421 ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred hcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 99999999998655789999999999999999999999999999999999999999 553
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.3e-81 Score=727.48 Aligned_cols=461 Identities=29% Similarity=0.450 Sum_probs=408.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----CeEEEEEe
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liD 161 (777)
.+++|||+|+||+|||||||+++|++.+|.+.+.+ .+++++|+++.|++||+|+......+.|. ++.++|||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 46799999999999999999999999999876532 25689999999999999999999999885 68899999
Q ss_pred CCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCcee
Q 004038 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 162 TPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 241 (777)
||||.||..++.++++.+|++|+|||+++|++.++...|..+...++|+++|+||+|+..++..++.+++.+.++..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999888999999999999997766554444444333220
Q ss_pred EEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHH
Q 004038 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (777)
Q Consensus 242 ~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~ 321 (777)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 004038 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (777)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~ 401 (777)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|++++|||+++|+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~ 205 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDN 205 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecC
Confidence 0137899999999999999999999999964 24789999999999999
Q ss_pred CCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc-C---CCcccccceeccCCCc-
Q 004038 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (777)
Q Consensus 402 ~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~- 476 (777)
+.|.++++||++|+|++||.|++.+++..++|.+|+.+.+ +..+++++.||||+.+. | ++++++||||++.+.+
T Consensus 206 ~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~ 284 (600)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (600)
T ss_pred CCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999996665 78999999999998885 4 4568999999988776
Q ss_pred -cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhc
Q 004038 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (777)
Q Consensus 477 -~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~ 550 (777)
.++++++.|+|+++++|+|.+.+|.++|.+||++|+.|||||.++ +||+|.++.| ||+|||||+++||+++|
T Consensus 285 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred ccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999997 6899999999 99999999999999999
Q ss_pred CcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 004038 551 KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 630 (777)
Q Consensus 551 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~ 630 (777)
|+++.+++|+|+||||+++. .++.|.|
T Consensus 363 ~~~v~~~~P~V~Yreti~~g------------------------------~~~~~~~----------------------- 389 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTDG------------------------------EVIEVDN----------------------- 389 (600)
T ss_pred CceEEEecCEEEEEEEEeCC------------------------------cEEEEEC-----------------------
Confidence 99999999999999998751 1112221
Q ss_pred HcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCce
Q 004038 631 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 710 (777)
Q Consensus 631 ~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~ 710 (777)
| .||| ||++++ .||||||+++|.||++|+|+||++|++|||+
T Consensus 390 ---p-~~~p----------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~ 431 (600)
T PRK05433 390 ---P-SKLP----------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGV 431 (600)
T ss_pred ---c-ccCC----------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCE
Confidence 2 2444 455431 8999999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004038 711 INSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 711 i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
+++++..+ +...|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 432 ~~~~~~~~-~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 432 QKDMEYLG-NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred EeCcEecC-CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 99999876 67999999999999 999999999999999999999999986
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.1e-80 Score=719.11 Aligned_cols=460 Identities=29% Similarity=0.456 Sum_probs=405.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--C---eEEEEEeC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDT 162 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~---~~i~liDT 162 (777)
+++|||+|+||+|||||||+++|++.+|.+... ..+++++|+.+.|+++|+|+......+.|. + +.++||||
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 368999999999999999999999998877643 235689999999999999999999988884 3 78999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
|||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+...+..+..+++.+.++.
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~----- 152 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL----- 152 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----
Confidence 999999999999999999999999999999999999998888889999999999998765544444444333221
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
T Consensus 153 -------------------------------------------------------------------------------- 152 (595)
T TIGR01393 153 -------------------------------------------------------------------------------- 152 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~ 402 (777)
...+++++||++|.|+++|+++|.+++|+|.. ++++|++++||++++|++
T Consensus 153 ----------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~ 202 (595)
T TIGR01393 153 ----------DASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNY 202 (595)
T ss_pred ----------CcceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCC
Confidence 00137899999999999999999999999965 247899999999999999
Q ss_pred CceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc-C---CCcccccceeccCCCc--
Q 004038 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP-- 476 (777)
Q Consensus 403 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~-- 476 (777)
.|.++++||++|+|++||.|++.+.++.++|.+|+.+.+.. .+++++.||||+.+. | ++++++||||++.+++
T Consensus 203 ~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~ 281 (595)
T TIGR01393 203 RGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAK 281 (595)
T ss_pred CcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccc
Confidence 99999999999999999999999989899999999777665 899999999998874 4 5668999999988766
Q ss_pred cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhcC
Q 004038 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 551 (777)
Q Consensus 477 ~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~~ 551 (777)
.++++++.|+|+++++|+|.+.+|.++|.+||++|+.|||+|.++. ||+|.++.| ||+|||||+++||+++||
T Consensus 282 ~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~ 359 (595)
T TIGR01393 282 EPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFN 359 (595)
T ss_pred cCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhC
Confidence 3788899999999999999999999999999999999999999984 899988885 999999999999999999
Q ss_pred cEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHH
Q 004038 552 VEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMS 631 (777)
Q Consensus 552 v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~ 631 (777)
+++.+++|+|+||||+.+ |+ ++.|.|
T Consensus 360 ~~v~~~~P~V~Yreti~~---------------g~---------------~~~~~~------------------------ 385 (595)
T TIGR01393 360 LDLITTAPSVIYRVYLTN---------------GE---------------VIEVDN------------------------ 385 (595)
T ss_pred CeeEEecCEEEEEEEecC---------------Cc---------------EEEEEC------------------------
Confidence 999999999999999873 11 122221
Q ss_pred cCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCcee
Q 004038 632 NGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQI 711 (777)
Q Consensus 632 ~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i 711 (777)
| .|||+.|+ -|.||||||+++|.+|++|+|+||++|++|||++
T Consensus 386 --p-~~~p~~~~----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~ 428 (595)
T TIGR01393 386 --P-SDLPDPGK----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQ 428 (595)
T ss_pred --c-ccCCCccc----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEE
Confidence 2 47887662 1799999999999999999999999999999999
Q ss_pred eeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCcccc
Q 004038 712 NSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDV 759 (777)
Q Consensus 712 ~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~ 759 (777)
++++..+++...|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++
T Consensus 429 ~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 429 TNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred eCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 9999865457999999999997 99999999999999999999999997
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.2e-79 Score=696.42 Aligned_cols=448 Identities=32% Similarity=0.506 Sum_probs=409.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeec---C-CccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE---G-TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~---g-~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
.++|||+|+||+|+|||||+++|++.+|.+...|.++. + .+++|+++.|++||+|+..+...+.|+++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 67899999999999999999999999999998888863 2 2569999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.||..++..+++.+|++|+|+|+.+|+..+++.+|+.++..++|+++|+||+|+.++++.+++++|++.|+.+++|++
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+|++.+..|+|++|++.++++.|.... |.. ..+.|.+++.||++|++||+++.+ +++.+
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~-~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGE-GHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCC-CCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 999999999999999999999996421 211 134567889999999999998754 56666
Q ss_pred HH-----------HhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEE
Q 004038 324 LI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 392 (777)
Q Consensus 324 ~l-----------~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 392 (777)
.+ +++++.+.++|||||||++|.||++|||+|++++|+|.++.... ....+ .+.|+++
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~----------~~~~~-~~~~~~~ 295 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE----------REVEP-TEEKFSG 295 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc----------eeecC-CCCceEE
Confidence 66 88899999999999999999999999999999999998643210 11122 2467999
Q ss_pred EEEEEe---ecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccce
Q 004038 393 LAFKIM---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (777)
Q Consensus 393 ~V~K~~---~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (777)
+|||+. .++++|+++|+|||||+|++||.|+|.++++++|+++++.++|.+++++++|.||||+++.|++++++|||
T Consensus 296 ~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDT 375 (526)
T PRK00741 296 FVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDT 375 (526)
T ss_pred EEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCC
Confidence 999998 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhh
Q 004038 470 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549 (777)
Q Consensus 470 L~~~~~~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 549 (777)
||+.+ +..++++++|.|+++++|+|+++.|.+||.+||++|++||| +++..|++|||++|+|||||||||+++||+++
T Consensus 376 L~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~e 453 (526)
T PRK00741 376 FTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNE 453 (526)
T ss_pred ccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHH
Confidence 99866 67788999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred cCcEEEEeCCeeeEEeeeec
Q 004038 550 FKVEANVGAPQVNYRESISK 569 (777)
Q Consensus 550 ~~v~v~~~~p~V~yrEti~~ 569 (777)
||+++.+++|+|++-.-|..
T Consensus 454 y~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 454 YNVEAIYEPVGVATARWVEC 473 (526)
T ss_pred hCCEEEEecCCccEEEEEeC
Confidence 99999999999999987753
No 20
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-78 Score=665.59 Aligned_cols=660 Identities=27% Similarity=0.386 Sum_probs=490.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--eeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
+...+|||++++|+|||||||++.|+...|.++. .|.+ +++|+.+.|+.||||++++.+++..+++.+||||+|
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagki----rfld~redeq~rgitmkss~is~~~~~~~~nlidsp 80 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI----RFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSP 80 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccce----eeccccchhhhhceeeeccccccccCceEEEEecCC
Confidence 4578999999999999999999999988887764 3443 899999999999999999999998899999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcch-----------HhHHHHHH
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTRDMIV 232 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~-----------~~~~~~i~ 232 (777)
||.||..++..+.+.+|+++++||+.+|+..||..+++++...+...++|+|||||+..++ -+++++++
T Consensus 81 ghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn 160 (887)
T KOG0467|consen 81 GHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVN 160 (887)
T ss_pred CccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999765432 23445554
Q ss_pred HHhCCCcee-EEeccCCCCCce--eeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHH---------------
Q 004038 233 TNLGAKPLV-VQLPVGAEDNFK--GVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ--------------- 294 (777)
Q Consensus 233 ~~l~~~~~~-~~~pi~~~~~~~--g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------- 294 (777)
...|....- +++- ....... ++.---...++.|....+||.|....+..-+..+.....+.
T Consensus 161 ~~i~~~~~~~v~l~-~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~kt 239 (887)
T KOG0467|consen 161 GVIGQFLGGIVELD-DNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKT 239 (887)
T ss_pred hHHHHhhcchhhcc-chhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchh
Confidence 433311000 0000 0000000 00000011223344334677777666554333222111112
Q ss_pred -------------------HHHHHHh--------cCHHHHHHHhc--CCCCCHHHHHHHHHhhhhcCcceeEeeccccCC
Q 004038 295 -------------------MIETIVE--------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKN 345 (777)
Q Consensus 295 -------------------l~e~~~~--------~dd~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~ 345 (777)
.+|.+|. -|.+.+++... +..+-+.+++..+.. +.+.|+|+-
T Consensus 240 k~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~--im~~wLPls------- 310 (887)
T KOG0467|consen 240 KRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDA--IMSTWLPLS------- 310 (887)
T ss_pred hhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHH--HHHhhcccc-------
Confidence 2233332 12223333322 122333344422222 346788874
Q ss_pred CChHHHHHHHHHhCCCCCCCCCCCCCC--------CCCcccccccccCCCCCeEEEEEEEeecC-----CCceEEEEEEE
Q 004038 346 KGVQPLLDAVVDYLPSPLDLPAMKGTD--------PENPEATLERAASDDEPFAGLAFKIMSDP-----FVGSLTFVRVY 412 (777)
Q Consensus 346 ~Gi~~Lld~i~~~lPsP~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~V~K~~~~~-----~~G~l~~~RV~ 412 (777)
+..+-+++.++|+|.+.+..++.. .+.+.......|++++|..+||.|+...+ ....++++|||
T Consensus 311 ---~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~ 387 (887)
T KOG0467|consen 311 ---DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIF 387 (887)
T ss_pred ---cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeec
Confidence 456677779999998876554321 01122334567899999999999997533 32368999999
Q ss_pred eeeecCCCeEEeCCC-------CceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCC-
Q 004038 413 AGTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF- 484 (777)
Q Consensus 413 sG~l~~g~~v~~~~~-------~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~- 484 (777)
|||++.||.+|..+. -...+|.++|+++|++.++.+++++|++++|.|-+.+....|||+.....++-...+
T Consensus 388 sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~ 467 (887)
T KOG0467|consen 388 SGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQ 467 (887)
T ss_pred cCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeee
Confidence 999999999997654 234579999999999999999999999999998444677889998754433333333
Q ss_pred CCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEE
Q 004038 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 564 (777)
Q Consensus 485 ~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yr 564 (777)
-+|.++++|+|.++.|+++|.++|+.|.+.||++++..+ ++||+++...||+|||.|+++|++.-++++.+++|.|+||
T Consensus 468 ~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfr 546 (887)
T KOG0467|consen 468 ITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFR 546 (887)
T ss_pred eeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhhhhceEEEecCCccchh
Confidence 389999999999999999999999999999999999985 7999999999999999999999993379999999999999
Q ss_pred eeeeccceee----------------------------------eEee------------------eccCC--C------
Q 004038 565 ESISKVSEVK----------------------------------YVHK------------------KQSGG--Q------ 584 (777)
Q Consensus 565 Eti~~~~~~~----------------------------------~~~~------------------~~~g~--~------ 584 (777)
||+.+.+... ++|. .+.+. .
T Consensus 547 ET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~ 626 (887)
T KOG0467|consen 547 ETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLI 626 (887)
T ss_pred hhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHH
Confidence 9994432110 0000 00000 0
Q ss_pred ---CceE------------EEEEEEeeccCCCCcEEEecccCC-------c-CccccHHHHHHHHHHHHHcCcccCCcee
Q 004038 585 ---GQFA------------DITVRFEPMEAGSGYEFKSEIKGG-------A-VPKEYIPGVMKGLEECMSNGVLAGFPVV 641 (777)
Q Consensus 585 ---~~~~------------~v~~~~~P~~~g~g~~f~~~~~~~-------~-i~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 641 (777)
+.|- .-++.++|.+.|.++.|...-.-. . +.+ +-+++..||+.++.+||||.+|++
T Consensus 627 s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~Ep~~ 705 (887)
T KOG0467|consen 627 SLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNEPMQ 705 (887)
T ss_pred HHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccccCcc
Confidence 0000 012347777777777765322111 1 223 669999999999999999999999
Q ss_pred eEEEEEeeccccCCCCC---HHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccC
Q 004038 642 DVRAALVDGSYHDVDSS---VLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP 718 (777)
Q Consensus 642 ~v~v~l~~~~~~~~~s~---~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~ 718 (777)
|++|.+..+...+.++- .+....|++.+|++|++...|+|+.|||.|+|++..|++|+||..|++|+|+|++++..+
T Consensus 706 g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~E 785 (887)
T KOG0467|consen 706 GICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKE 785 (887)
T ss_pred cEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhC
Confidence 99999998665543331 134568999999999999999999999999999999999999999999999999999887
Q ss_pred CCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchH
Q 004038 719 GGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 764 (777)
Q Consensus 719 g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 764 (777)
|+. +.|+|.+|+.|+|||+.+||..|+|.|+.++.|+||+.++.|+
T Consensus 786 gT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 786 GTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred CCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 654 9999999999999999999999999999999999999999865
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.8e-75 Score=664.28 Aligned_cols=447 Identities=30% Similarity=0.462 Sum_probs=396.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cC---CccccchhhhhhcceeEeeeEEEEEecCeEEEEEeC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g---~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
..++|||+|+||+|+|||||+++|++.+|.+...|.++ .| .+++|+++.|++||+|+..+...+.|+++.++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 36789999999999999999999999999999888886 33 378999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
|||.+|..++..+++.+|++|+|+|+..|+..+++.+|+.++..++|+++|+||+|+.++++.+++++|++.++..+.+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeec-----cccHh----HHHHHHHHHHHHHHHHHhcCHHHHHHHhcC
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-----DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYLEG 313 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 313 (777)
++||+.+..|+|++|++.++.+.|.....|+..... +.|.. ..+..+++|+.+ |.+.+.+++
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~-------- 238 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNE-------- 238 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccc--------
Confidence 999999999999999999999999654333322110 11211 122345566666 666665542
Q ss_pred CCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 004038 314 NEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 393 (777)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 393 (777)
++ +++++.+.++|||||||++|.||+.|||+|++++|+|.++.... ....+ .+.|++++
T Consensus 239 --~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~----------~~~~~-~~~~~~~~ 297 (527)
T TIGR00503 239 --FD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT----------RTVEP-TEEKFSGF 297 (527)
T ss_pred --cC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc----------eecCC-CCCCeeEE
Confidence 22 24566789999999999999999999999999999998643210 11222 36779999
Q ss_pred EEEEee--c-CCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCccccccee
Q 004038 394 AFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETL 470 (777)
Q Consensus 394 V~K~~~--~-~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL 470 (777)
|||+.. | +++|+++|+|||||+|++||+|+|.++++++|+++++.++|.+++++++|.||||+++.|++++++||||
T Consensus 298 VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl 377 (527)
T TIGR00503 298 VFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTF 377 (527)
T ss_pred EEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEe
Confidence 999988 7 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc
Q 004038 471 CDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550 (777)
Q Consensus 471 ~~~~~~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~ 550 (777)
|+. .+..++++++|.|+++++|+|+++.|.+||.+||++|++||| +++.+|++|+|++|+|||||||||+++||+++|
T Consensus 378 ~~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey 455 (527)
T TIGR00503 378 TQG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY 455 (527)
T ss_pred cCC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 984 467788899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CcEEEEeCCeeeEEe
Q 004038 551 KVEANVGAPQVNYRE 565 (777)
Q Consensus 551 ~v~v~~~~p~V~yrE 565 (777)
|+++.+++|+|+.-=
T Consensus 456 ~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 456 NVEARYEPVNVATAR 470 (527)
T ss_pred CCeEEEeCCCceEEE
Confidence 999999999998653
No 22
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-71 Score=581.48 Aligned_cols=452 Identities=32% Similarity=0.516 Sum_probs=410.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.++||||||+|+|||||||++.||.++|..+....+.. ++||....|++|||||-+....+.|++++||++|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E--RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE--RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhh--hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 56899999999999999999999999998887666654 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHh---CCCceeEEe
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL---GAKPLVVQL 244 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l---~~~~~~~~~ 244 (777)
|..|+++.+...|+++++|||.+|..+||+.+++.+.+.|++.|+|+||+|+++++.+.+++++-..| +.+
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~------ 154 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT------ 154 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC------
Confidence 99999999999999999999999999999999999999999999999999999999988888775433 221
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
|+-
T Consensus 155 -----------------------------------------------------------deQ------------------ 157 (603)
T COG1217 155 -----------------------------------------------------------DEQ------------------ 157 (603)
T ss_pred -----------------------------------------------------------hhh------------------
Confidence 111
Q ss_pred HHhhhhcCcceeEeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (777)
--+|++..||+.|. .+.+|+++|.+|+|.|.. +.++||.++|
T Consensus 158 --------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qv 209 (603)
T COG1217 158 --------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQV 209 (603)
T ss_pred --------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEE
Confidence 11577777777654 478999999999999974 3589999999
Q ss_pred EEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC---ceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceec
Q 004038 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLC 471 (777)
Q Consensus 395 ~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~ 471 (777)
+-..+++++|++..|||++|++|+||.|.....+ +..||.+++-+.|-++.++++|.||||++|+|+.++..|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 9999999999999999999999999999865433 3468999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCceeEEEEEeCCCc---------CHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHH
Q 004038 472 DADHPILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (777)
Q Consensus 472 ~~~~~~~l~~~~~~~Pvv~~aiep~~~~---------d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~ 542 (777)
++.++..|+.+.+-+|.+++.+..++.. -..++.+.|.+-.+.+-+|+|+.-++-..+.++|.|||||-|+
T Consensus 290 d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsIL 369 (603)
T COG1217 290 DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSIL 369 (603)
T ss_pred CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHH
Confidence 9999999999999999999999877653 2478999999999999999998766668899999999999999
Q ss_pred HHHHHhhcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHH
Q 004038 543 VDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGV 622 (777)
Q Consensus 543 ~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i 622 (777)
++.+||+ |.|+.+|.|+|.||| |- |
T Consensus 370 iE~MRRE-GfEl~VsrP~Vi~ke-id----------------G------------------------------------- 394 (603)
T COG1217 370 IENMRRE-GFELQVSRPEVIIKE-ID----------------G------------------------------------- 394 (603)
T ss_pred HHHhhhc-ceEEEecCceEEEEe-cC----------------C-------------------------------------
Confidence 9999999 999999999999998 21 1
Q ss_pred HHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHH
Q 004038 623 MKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIG 702 (777)
Q Consensus 623 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~ 702 (777)
..+||+-.+.|.||++|.|.|+.
T Consensus 395 ---------------------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie 417 (603)
T COG1217 395 ---------------------------------------------------------VKCEPFEEVTIDVPEEHQGAVIE 417 (603)
T ss_pred ---------------------------------------------------------cCcCcceeEEecCchhhhhHHHH
Confidence 34699999999999999999999
Q ss_pred HHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchH
Q 004038 703 DLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 764 (777)
Q Consensus 703 ~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 764 (777)
.|..|+|...+|.+.++++..+.+.+|.+-++||.+++-++|+|.|.+...|+||+|+.+++
T Consensus 418 ~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 418 KLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred HHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccc
Confidence 99999999999999988899999999999999999999999999999999999999998854
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-71 Score=592.62 Aligned_cols=468 Identities=28% Similarity=0.439 Sum_probs=403.1
Q ss_pred ccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC---eEEEE
Q 004038 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINI 159 (777)
Q Consensus 83 ~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~l 159 (777)
...|.+++||++||+|+|||||||.++||..+|.+.+.. ....++|....|++||||+.....++.|++ +.+|+
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~---~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI---GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC---chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 344668999999999999999999999999999765421 234899999999999999999999999988 99999
Q ss_pred EeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCc
Q 004038 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (777)
Q Consensus 160 iDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~ 239 (777)
||||||.||..|+.+.+..||++||||||++|+++||...+.++.+.|+.+|.|+||+|++.++.+++..++.+.|+..+
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776521
Q ss_pred eeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Q 004038 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (777)
Q Consensus 240 ~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (777)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 004038 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (777)
Q Consensus 320 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (777)
-+++.+||++|.|+.++|++|++++|.|... .++||++++|.+++
T Consensus 210 ---------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~--------------------~d~plr~Lifds~y 254 (650)
T KOG0462|consen 210 ---------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI--------------------RDAPLRMLIFDSEY 254 (650)
T ss_pred ---------------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--------------------CCcchHHHhhhhhh
Confidence 1488899999999999999999999999762 48999999999999
Q ss_pred cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccC--ceeecceeecCCEEEEcC-CCcccccceeccCC--
Q 004038 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN--SREDVKVALAGDIIALAG-LKDTITGETLCDAD-- 474 (777)
Q Consensus 400 ~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~--~~~~v~~a~aGdIv~i~g-l~~~~~GdtL~~~~-- 474 (777)
|.+.|.++++||..|.+++||+|....+++...++.+-.|.-+ ...+++...+|+|++..+ +++...|||++...
T Consensus 255 D~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462|consen 255 DEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred hhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccC
Confidence 9999999999999999999999998888877766666555533 334445556677776666 88899999999876
Q ss_pred C-ccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCC--Ce-EEEEecChhhHHHHHHHHHhhc
Q 004038 475 H-PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEI--NQ-TVIEGMGELHLEIIVDRLKREF 550 (777)
Q Consensus 475 ~-~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~et--ge-~il~g~GelHLei~~~rL~~~~ 550 (777)
. ...++.++...|++++...|.+.+|...|..++.+|+.+|+++.+..+..+ |+ |.++++|.|||||+.+||++||
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey 414 (650)
T KOG0462|consen 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY 414 (650)
T ss_pred cccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc
Confidence 2 344666777799999999999999999999999999999999999875321 33 7899999999999999999999
Q ss_pred CcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 004038 551 KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 630 (777)
Q Consensus 551 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~ 630 (777)
|.++.+++|.|+||--..+.. -.....|.
T Consensus 415 g~elivt~PtV~Yr~~~~~~~------------------~~~i~np~--------------------------------- 443 (650)
T KOG0462|consen 415 GAELIVTPPTVPYRVVYSNGD------------------EILISNPA--------------------------------- 443 (650)
T ss_pred CceeeecCCcceEEEEecCCc------------------eeeecChh---------------------------------
Confidence 999999999999995432211 01112231
Q ss_pred HcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCce
Q 004038 631 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 710 (777)
Q Consensus 631 ~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~ 710 (777)
-+| ..+. -..+|||+..++|.+|+||+|.||..++.|||.
T Consensus 444 ------~fp-----------~~~~-----------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRge 483 (650)
T KOG0462|consen 444 ------LFP-----------DPSD-----------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRGE 483 (650)
T ss_pred ------hCC-----------Cccc-----------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhhh
Confidence 011 0000 025689999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEEEechhhhhc-hHHHhhccCCceEEEEEEeCcccc
Q 004038 711 INSFGDKPGGLKVVDALVPLAEMFQ-YVSALRGMTKGRASYIMQLAKFDV 759 (777)
Q Consensus 711 i~~~~~~~g~~~~i~a~~P~~e~~g-~~~~Lrs~T~G~a~~~~~f~~y~~ 759 (777)
..+|...++++..++..+|++|+.| |...|.+.|+|+|+|.++|++|++
T Consensus 484 q~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~ 533 (650)
T KOG0462|consen 484 QKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQA 533 (650)
T ss_pred eecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeeccccccc
Confidence 9999988778999999999999998 999999999999999999999994
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-69 Score=572.36 Aligned_cols=465 Identities=30% Similarity=0.457 Sum_probs=406.8
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----CeEEEE
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINI 159 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~l 159 (777)
.+.+++||++|++|.|||||||.++|+..+|.+.... -...++|.++.|++|||||+.....+.|+ .+.+||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Re---m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSERE---MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHH---HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 4568899999999999999999999999999876421 12368999999999999999999999985 389999
Q ss_pred EeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCc
Q 004038 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (777)
Q Consensus 160 iDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~ 239 (777)
||||||.||.-|+.+++..|.+++|||||+.|++.||..-.-++...++-+|.|+||+|++.++.+++.++|++.+|...
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888731
Q ss_pred eeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Q 004038 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (777)
Q Consensus 240 ~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (777)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (603)
T COG0481 161 S------------------------------------------------------------------------------- 161 (603)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 004038 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (777)
Q Consensus 320 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (777)
-.+.+||++|.||+++|++|++.+|.|.. ++++|+.|++|..++
T Consensus 162 ----------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~y 205 (603)
T COG0481 162 ----------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWY 205 (603)
T ss_pred ----------------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccc
Confidence 14568999999999999999999999975 358999999999999
Q ss_pred cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE-cCCC---cccccceeccCCC
Q 004038 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLK---DTITGETLCDADH 475 (777)
Q Consensus 400 ~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~---~~~~GdtL~~~~~ 475 (777)
|+++|.++++||+.|++++||+|...++|++..|.++..+.. ...+++++.||+++.+ +|++ +++.|||++...+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 999999999999999999999999999999999999987775 6788999999999876 5555 4788999985544
Q ss_pred c--cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHh
Q 004038 476 P--ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKR 548 (777)
Q Consensus 476 ~--~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~ 548 (777)
| .++++++-..|++++.+.|.+..|.+.|.+||.+|..+|-+|.++. ||.+.+-.| +|-|||||+.+||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~--EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP--ETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeecc--ccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 3 5688888889999999999999999999999999999999999984 777765555 699999999999999
Q ss_pred hcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHH
Q 004038 549 EFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEE 628 (777)
Q Consensus 549 ~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~ 628 (777)
+|++++....|.|.|+-..+... ....=.|.
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~------------------~~~i~NPs------------------------------- 393 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGE------------------EIEVDNPS------------------------------- 393 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCc------------------EEEecChH-------------------------------
Confidence 99999999999999996544211 11111221
Q ss_pred HHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCC
Q 004038 629 CMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRR 708 (777)
Q Consensus 629 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rr 708 (777)
.+| +-+. =-.+.||+.+++|.+|+||+|.||..++.+|
T Consensus 394 --------~~P----------------~~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kR 431 (603)
T COG0481 394 --------DLP----------------DPNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQEKR 431 (603)
T ss_pred --------hCC----------------Chhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHHHhc
Confidence 111 0000 0257899999999999999999999999999
Q ss_pred ceeeeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccCC
Q 004038 709 GQINSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 709 g~i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
|...+++..+.++..+...+|++|+ ++|.+.|+|.|+|+|+|.++|.+|++-+
T Consensus 432 G~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 432 GIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred CceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 9999999887678999999999998 6999999999999999999999999743
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-62 Score=511.73 Aligned_cols=448 Identities=30% Similarity=0.492 Sum_probs=377.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeec----CCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~----g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
.+.|++|||.|+|+|||||++.||...|++...|.|.. ..+.+||++.|++|||++.++...|+|.++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 56789999999999999999999999999988887743 23789999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.||++.+.+.|..+|.+|+||||..|+++||+.+++-|+..++|++-+|||+||...++-+++++|.+.|+..+.|+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceee---eccccH-hHHHHH-HHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFA---YEDIPA-NLQKMA-QEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~---~~~~~~-~~~~~~-~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 318 (777)
|||+.+..|+|++|+.+.....|.+...+.... ...+.. +..... ..+++++.|.+ +|++. .+.+.+
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~-----EL~~~--a~~~Fd- 241 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL-----ELVQG--AGNEFD- 241 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH-----HHHHh--hccccC-
Confidence 999999999999999999888888753322221 111111 111110 11122222211 01100 011111
Q ss_pred HHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCC-CCCeEEEEEEE
Q 004038 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD-DEPFAGLAFKI 397 (777)
Q Consensus 319 ~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~V~K~ 397 (777)
...++.+...|||+|||++|.||+.+|+.++++.|+|..++...+ ...+ +..+.+||||+
T Consensus 242 -------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~------------~v~p~e~kfsGFVFKI 302 (528)
T COG4108 242 -------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR------------EVEPTEDKFSGFVFKI 302 (528)
T ss_pred -------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcC------------cccCCCCccceEEEEE
Confidence 223445778999999999999999999999999999987654221 1122 34499999999
Q ss_pred ee---cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCC
Q 004038 398 MS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (777)
Q Consensus 398 ~~---~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~ 474 (777)
.. .+++.+++|.||.||.+.+|+++...++|+..++..-..+++++++.+++|.||||++|..-..++.||||+..
T Consensus 303 QANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G- 381 (528)
T COG4108 303 QANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG- 381 (528)
T ss_pred EcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-
Confidence 64 35678999999999999999999999999999999999999999999999999999999776678999999976
Q ss_pred CccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEE
Q 004038 475 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEA 554 (777)
Q Consensus 475 ~~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v 554 (777)
....+++++.-.|-++..|..+++....+|.++|.+|++|- .+++.....+++.++...|.||+||+.+||+.+|++++
T Consensus 382 e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~ 460 (528)
T COG4108 382 EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEA 460 (528)
T ss_pred ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeE
Confidence 67788888888899999999999999999999999999998 67777777889999999999999999999999999999
Q ss_pred EEeCCeeeEE
Q 004038 555 NVGAPQVNYR 564 (777)
Q Consensus 555 ~~~~p~V~yr 564 (777)
.+.+..+...
T Consensus 461 ~~e~~~~~~a 470 (528)
T COG4108 461 VFEPVNFSTA 470 (528)
T ss_pred EEeeccceEE
Confidence 9976655544
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=3.3e-51 Score=431.52 Aligned_cols=270 Identities=72% Similarity=1.153 Sum_probs=261.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
||+++||+|+|||||+++|++.+|.+.+.|.+..|++++|+.+.|++||+|++.....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (777)
+..+++.+|++|+|||+.+|++.++..+|+.+.+.++|+++|+||+|+.+++++++++++++.++..+.+.++|+++...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 004038 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (777)
Q Consensus 252 ~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~ 331 (777)
|+|+||++.+++|.|..+ .|..+...++|+++.+..+++|++|+|.+++.||+|||+||+|++++.+++.++++++++.
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3666888899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEeeccccCCCChHHHHHHHHHhCCCC
Q 004038 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (777)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP 362 (777)
+.++|||||||.++.|++.|||+|+.++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=9.2e-47 Score=397.38 Aligned_cols=263 Identities=36% Similarity=0.547 Sum_probs=244.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee----cCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~----~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
++|||+|+||+|+|||||+++|++.+|.+.+.|.++ .|++++|+.+.|++||+|+..+...+.|+++.++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999999999887 5889999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
|.+|..++..+++.+|++|+|+|++.++..++..+|+.+...++|+++|+||+|+.++++.++++++++.|+.+++++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
|++.+..|+|++|++.+++|.|.....+......++|+++. |.+++.||+|||+|+++++++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222345556676543 7889999999999999999999999999
Q ss_pred HHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCC
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP 362 (777)
++++++.+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=8.8e-45 Score=384.86 Aligned_cols=268 Identities=44% Similarity=0.715 Sum_probs=257.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
||+++||+|+|||||+++|++.+|.+.+.|.+..|++.+|+.+.|+++++|+......+.|+++.+++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 79999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (777)
+..+++.+|++++|+|+..+...++..+|+++...++|.++|+||+|+.++++.+.++++++.++.++++.++|++.+.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 004038 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (777)
Q Consensus 252 ~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~ 331 (777)
|.|++|++.++++.|.. |......++|+++.+..+++|++|+|.+++.||+|||+||++++++++++...++++++.
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999964 333566789999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEeeccccCCCChHHHHHHHHHhCCCC
Q 004038 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (777)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP 362 (777)
+.++|||||||+++.|++.|++++.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=7.9e-44 Score=369.17 Aligned_cols=237 Identities=41% Similarity=0.653 Sum_probs=222.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
||+++||+|+|||||+++|++.+|.+.+.|.++.|++++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (777)
+..+++.+|++++|+|+.+|+..+++.+|+.+.+.++|+++|+||+|+.++++.+++++|++.|+.+++|+|+|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 004038 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (777)
Q Consensus 252 ~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~ 331 (777)
+++.+ . .. .+++++|+|.+++.||+|||+||+|++++.+++.++++++++.
T Consensus 156 ---~~~~~-------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNI-------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeee-------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11110 0 01 1235789999999999999999999999999999999999999
Q ss_pred CcceeEeeccccCCCChHHHHHHHHHhCCCC
Q 004038 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (777)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP 362 (777)
+.++|||||||.++.|++.|||+|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 30
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2e-35 Score=347.20 Aligned_cols=312 Identities=26% Similarity=0.346 Sum_probs=250.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+.++|+|+||+|||||||+++|.. + .+. ....+|+|.+.....+.|+++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~--~------~v~----------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK--T------NVA----------AGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--C------Ccc----------ccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 35779999999999999999999951 1 111 11247899999988999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEecc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
+|...+.++++.+|++|||+|+.+|+.+|+.++|..+...++|+|+|+||+|+.+++++++..++.+ .+.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~--------- 418 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL--------- 418 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc---------
Confidence 9999999999999999999999999999999999999999999999999999987766555444432 000
Q ss_pred CCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 004038 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (777)
Q Consensus 247 ~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~ 326 (777)
+.+.|
T Consensus 419 -----------------------------------------------------------~~e~~---------------- 423 (787)
T PRK05306 419 -----------------------------------------------------------VPEEW---------------- 423 (787)
T ss_pred -----------------------------------------------------------cHHHh----------------
Confidence 00000
Q ss_pred hhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceE
Q 004038 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (777)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l 406 (777)
+..+|++++||++|.|+++|+++|..... .. ...++++.|+.++|++++.+++.|.+
T Consensus 424 -----g~~vp~vpvSAktG~GI~eLle~I~~~~e-~~-----------------~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 424 -----GGDTIFVPVSAKTGEGIDELLEAILLQAE-VL-----------------ELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred -----CCCceEEEEeCCCCCCchHHHHhhhhhhh-hh-----------------hcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 12368999999999999999999975321 00 01234688999999999999999999
Q ss_pred EEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceeccCCCc---------
Q 004038 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (777)
Q Consensus 407 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~--------- 476 (777)
+++||++|+|+.||.|++.. +.++|+.|.+....++++|.|||+|.|.||+++ .+||||+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 567888888877889999999999999999998 999999832111
Q ss_pred ---------------cccccCCCC-----CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecCh
Q 004038 477 ---------------ILLERMDFP-----DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 536 (777)
Q Consensus 477 ---------------~~l~~~~~~-----~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~Ge 536 (777)
..++.+..+ .+.+.+.|++...+..+.|..+|.+|..+++.+.+- -+|.|.
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~---------~~~vG~ 626 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII---------HSGVGA 626 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE---------eeccCC
Confidence 122222111 136999999999999999999999999999988764 466777
Q ss_pred hh
Q 004038 537 LH 538 (777)
Q Consensus 537 lH 538 (777)
+.
T Consensus 627 it 628 (787)
T PRK05306 627 IT 628 (787)
T ss_pred CC
Confidence 64
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.5e-35 Score=329.74 Aligned_cols=274 Identities=27% Similarity=0.400 Sum_probs=219.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+..+||+++||+|||||||+++|++..|.+.. ....+...+|+.+.|+++|+|++.....+.+++.+++|+|||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 466799999999999999999999988776532 111223578999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
+|...+.+++..+|++++|||+.+|+..|+++++.++...++| +|+++||+|+...+ +..+.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~------------- 151 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE------------- 151 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999 56789999987532 1111111
Q ss_pred cCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHH
Q 004038 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (777)
Q Consensus 246 i~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l 325 (777)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~l~~~l 158 (409)
T CHL00071 152 -------------------------------------------------------------------------LEVRELL 158 (409)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1122222
Q ss_pred HhhhhcCcceeEeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCC
Q 004038 326 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387 (777)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (777)
+........+|++++||++|. |+..|+++|.+++|.|.. +.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~ 218 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER--------------------DTD 218 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC--------------------CCC
Confidence 221112234678888888775 367899999999987753 136
Q ss_pred CCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCC--CCceeecceeEEeccCceeecceeecCCEEEE--cCCC-
Q 004038 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (777)
Q Consensus 388 ~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (777)
.||+++|++++.+++.|.+++|||++|+++.||.|...+ .+...+|++|.... +++++|.|||+|++ .|++
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCH
Confidence 899999999999999999999999999999999998643 34567899997643 57899999999976 4654
Q ss_pred -cccccceeccCC
Q 004038 463 -DTITGETLCDAD 474 (777)
Q Consensus 463 -~~~~GdtL~~~~ 474 (777)
++.+||+|++++
T Consensus 295 ~~i~~G~vl~~~~ 307 (409)
T CHL00071 295 EDIERGMVLAKPG 307 (409)
T ss_pred HHcCCeEEEecCC
Confidence 488999999875
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.5e-35 Score=328.28 Aligned_cols=273 Identities=27% Similarity=0.404 Sum_probs=219.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee-ecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v-~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.++.+||+++||+|||||||+++|+...+. .|.. ..+.+.+|+.+.|+++|+|++.....+.+++..++|||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 466799999999999999999999743322 1211 112346899999999999999998888888899999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
.+|..++..++..+|++++|+|+.+|+..|+++++.++...++|. |+|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~------------ 151 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH------------
Confidence 999999999999999999999999999999999999999999995 6889999986321 1111111
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T PRK12736 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111122
Q ss_pred HHhhhhcCcceeEeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (777)
++........+|++++||++|. ++..|++++.+++|.|.. +.++||+++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~r~~I~~ 217 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------------------DTDKPFLMPVED 217 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEE
Confidence 2221112234689999999983 689999999999997743 136899999999
Q ss_pred EeecCCCceEEEEEEEeeeecCCCeEEeCCC--CceeecceeEEeccCceeecceeecCCEEEE--cCCC--ccccccee
Q 004038 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (777)
Q Consensus 397 ~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL 470 (777)
++.+++.|++++|||.+|+|+.||.|++.+. +...+|++|... ..++++|.|||++++ .|++ ++.+|++|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 9999999999999999999999999998665 556789998753 367899999999976 6764 48899999
Q ss_pred ccCC
Q 004038 471 CDAD 474 (777)
Q Consensus 471 ~~~~ 474 (777)
|+++
T Consensus 294 ~~~~ 297 (394)
T PRK12736 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9875
No 33
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.1e-34 Score=327.03 Aligned_cols=273 Identities=27% Similarity=0.355 Sum_probs=218.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
..+..+||+++||+|+|||||+++|++.++.+.. ....+...+|+.+.|+++|+|++.....+.+++..++|||||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 3467899999999999999999999988776532 22334467999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc--hHhHHHHHHHHhCCCceeE
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~--~~~~~~~i~~~l~~~~~~~ 242 (777)
.+|..++..++..+|++++|||+.+|+..|+++++.++...++| +++++||||+...+ ++.+.+++++.|.
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~------ 228 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLS------ 228 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999 56789999986522 1222223333221
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
T Consensus 229 -------------------------------------------------------------------------------- 228 (478)
T PLN03126 229 -------------------------------------------------------------------------------- 228 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCcceeEeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccc
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~ 384 (777)
..-.....+|++.+||+++. ++..|++.|.++.|.|..
T Consensus 229 ----~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------------------- 284 (478)
T PLN03126 229 ----SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR-------------------- 284 (478)
T ss_pred ----hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------------------
Confidence 11111122455555555542 256799999988776643
Q ss_pred CCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC--ceeecceeEEeccCceeecceeecCCEEEE--cC
Q 004038 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AG 460 (777)
Q Consensus 385 ~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g 460 (777)
+.+.|+++.|..++..+++|.++.|+|.+|++++||.|+..+.+ ...+|++|... ..++++|.|||.+++ .|
T Consensus 285 ~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~ 360 (478)
T PLN03126 285 QTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRG 360 (478)
T ss_pred ccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccC
Confidence 12689999999999999999999999999999999999987654 45678888754 378999999999988 55
Q ss_pred CC--cccccceeccCC
Q 004038 461 LK--DTITGETLCDAD 474 (777)
Q Consensus 461 l~--~~~~GdtL~~~~ 474 (777)
++ ++..|++||+++
T Consensus 361 i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 361 IQKADIQRGMVLAKPG 376 (478)
T ss_pred CcHHHcCCccEEecCC
Confidence 54 378999999875
No 34
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=7.2e-35 Score=327.81 Aligned_cols=272 Identities=26% Similarity=0.312 Sum_probs=222.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee---------eeecCC----ccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVHEGT----ATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g---------~v~~g~----~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
++..||+++||+|+|||||+++|++.+|.+...+ .+..|+ +.+|+.++|++||+|++.+...+.|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5568999999999999999999999999876533 222333 479999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-------chHHHHHHHHHHHcCCCE-EEEEEccCCCCc----
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 222 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~---- 222 (777)
+.++|||||||.+|..++..++..+|++|+|||+.+|+ ..||+++|.++...|+|. |+++||||+...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 489999999999999996 589999996542
Q ss_pred -chHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 223 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 223 -~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
+++++.+++++.|+.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 234444444433321
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~ 369 (777)
......-+|++++||++|.|+. .|+++|.+. +.|..
T Consensus 181 --------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~----- 228 (446)
T PTZ00141 181 --------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR----- 228 (446)
T ss_pred --------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc-----
Confidence 1011123689999999999985 488888554 43422
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecce
Q 004038 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (777)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (777)
+.+.|+++.|..++..++.|+++.|||.+|+|++||.|...+.+...+|++|... ..++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCE
Confidence 1368999999999999999999999999999999999999998888899999754 367999
Q ss_pred eecCCEEEE--cCCC--cccccceeccCC
Q 004038 450 ALAGDIIAL--AGLK--DTITGETLCDAD 474 (777)
Q Consensus 450 a~aGdIv~i--~gl~--~~~~GdtL~~~~ 474 (777)
|.|||.+++ .+++ ++.+|++|++..
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999988 3432 378999999864
No 35
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1e-34 Score=326.43 Aligned_cols=272 Identities=26% Similarity=0.315 Sum_probs=220.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee--eee----c-------CCccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVH----E-------GTATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g--~v~----~-------g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
+..+||+++||+|+|||||+.+|++.+|.+.+.+ .++ . .++++|+.++|++||+|++.+...+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 5678999999999999999999999999776532 111 1 25789999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-------chHHHHHHHHHHHcCCCE-EEEEEccCCCC-----
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLG----- 221 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-iiviNKiD~~~----- 221 (777)
+.++|||||||.+|..++..+++.+|++|+|||+.+|. ..|+++++.++...++|. |+++||||+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999883 279999999999999975 77899999862
Q ss_pred cchHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
.++++++++++..++.
T Consensus 165 ~~~~~i~~ei~~~l~~---------------------------------------------------------------- 180 (447)
T PLN00043 165 ARYDEIVKEVSSYLKK---------------------------------------------------------------- 180 (447)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 2233344444333221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~ 369 (777)
......-+|++++||++|.|+. .|+++|.+ +|.|..
T Consensus 181 --------------------------~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~----- 228 (447)
T PLN00043 181 --------------------------VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR----- 228 (447)
T ss_pred --------------------------cCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc-----
Confidence 0001112478888999998874 48888865 554432
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecce
Q 004038 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (777)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (777)
..+.|+++.|..++..++.|++..|||.+|++++||.|...+.+...+|++|... ..++++
T Consensus 229 ---------------~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~ 289 (447)
T PLN00043 229 ---------------PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQE 289 (447)
T ss_pred ---------------ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCE
Confidence 1368999999999999999999999999999999999999998888899999754 378999
Q ss_pred eecCCEEEE--cCC--CcccccceeccCC
Q 004038 450 ALAGDIIAL--AGL--KDTITGETLCDAD 474 (777)
Q Consensus 450 a~aGdIv~i--~gl--~~~~~GdtL~~~~ 474 (777)
|.|||.+++ .++ +++.+|++||+..
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999999988 444 3478999999863
No 36
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.2e-34 Score=319.76 Aligned_cols=273 Identities=28% Similarity=0.409 Sum_probs=216.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.++.+||+++||+|||||||+++|++... ..|... .+.+.+|+.+.|++||+|++.....+.+++..++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 46679999999999999999999974322 222211 12357899999999999999999988888899999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
.+|..++..++..+|++++|+|+.+|+..|+++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~------------ 151 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH------------
Confidence 9999999999999999999999999999999999999999999987 589999986422 1111110
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
++++..
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T TIGR00485 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhhhcCcceeEeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (777)
++........+|++++||++|. ++..|++++.+++|.|.. +.++||+++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~p~r~~V~~ 217 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------------------ETDKPFLMPIED 217 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 1111111233689999999875 467899999998887754 136899999999
Q ss_pred EeecCCCceEEEEEEEeeeecCCCeEEeCC--CCceeecceeEEeccCceeecceeecCCEEEE--cCCC--ccccccee
Q 004038 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (777)
Q Consensus 397 ~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL 470 (777)
++.+++.|++++|||.+|++++||.|+..+ .++..+|++|... ..++++|.|||++++ .|++ ++++|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999999999999999999999999999765 3566789999763 367899999999977 6663 48899999
Q ss_pred ccCC
Q 004038 471 CDAD 474 (777)
Q Consensus 471 ~~~~ 474 (777)
|+++
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9864
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.5e-34 Score=315.75 Aligned_cols=273 Identities=27% Similarity=0.389 Sum_probs=216.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.++..||+++||+|||||||+++|++..+. .|... ...+.+|+.+.|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 456789999999999999999999864332 11111 12357899999999999999999888888899999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
.+|...+..++..+|++++|+|+.+|+..|+++++..+...++|.+ +++||+|+...+ +..+.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~----------- 152 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM----------- 152 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999977 579999986421 11111110
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
++...
T Consensus 153 ---------------------------------------------------------------------------ei~~~ 157 (396)
T PRK12735 153 ---------------------------------------------------------------------------EVREL 157 (396)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHhhhhcCcceeEeeccccCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEE
Q 004038 325 IRKGTIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~----------~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (777)
+.........+|++++||++| .|+..|+++|.+.+|.|.. +.++||+++|
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------------------~~~~p~r~~I 217 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------------------AIDKPFLMPI 217 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------------------cCCCCeEEEE
Confidence 111111112367888999888 3788999999999997743 1368999999
Q ss_pred EEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--CceeecceeEEeccCceeecceeecCCEEEE--cCCC--cccccc
Q 004038 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 468 (777)
Q Consensus 395 ~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gd 468 (777)
..++..++.|.++.|||.+|++++||.|+..+. ++..+|++|... .+++++|.|||.+++ .|++ ++.+|+
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~ 293 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQ 293 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcce
Confidence 999999999999999999999999999997764 456788888753 378999999999988 5664 488999
Q ss_pred eeccCC
Q 004038 469 TLCDAD 474 (777)
Q Consensus 469 tL~~~~ 474 (777)
+||+++
T Consensus 294 vl~~~~ 299 (396)
T PRK12735 294 VLAKPG 299 (396)
T ss_pred EEEcCC
Confidence 999875
No 38
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.7e-33 Score=313.50 Aligned_cols=272 Identities=27% Similarity=0.364 Sum_probs=216.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+..+||+++||+|||||||+++|++....... +. ..+...+|+.+.|++||+|++.....+.+++.+++|+|||||.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~-~~-~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AE-AKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccC-Cc-ccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 356789999999999999999999864321110 11 1122478999999999999999998888889999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcc--hHhHHHHHHHHhCCCceeEE
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~--~~~~~~~i~~~l~~~~~~~~ 243 (777)
+|..++..++..+|++++|+|+.+|+..|+++++.++...++|.+ +++||+|+...+ ++...+++++.
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~--------- 157 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL--------- 157 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999986 589999986421 11111122221
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
T Consensus 158 -------------------------------------------------------------------------------- 157 (396)
T PRK00049 158 -------------------------------------------------------------------------------- 157 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhcCcceeEeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 393 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 393 (777)
++........+|++++||+++. |+..|+++|.+++|.|.. ..+.||++.
T Consensus 158 -l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~~p~r~~ 216 (396)
T PRK00049 158 -LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER--------------------AIDKPFLMP 216 (396)
T ss_pred -HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC--------------------CCCCCeEEE
Confidence 1111111223678888888864 678999999999987743 136899999
Q ss_pred EEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--CceeecceeEEeccCceeecceeecCCEEEE--cCC--Cccccc
Q 004038 394 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITG 467 (777)
Q Consensus 394 V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~G 467 (777)
|..++..++.|.++.|+|.+|++++||.|...+. ++..+|++|... .+++++|.|||.+++ .|+ +++..|
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G 292 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERG 292 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcc
Confidence 9999999999999999999999999999987654 566789998754 367999999999988 665 348899
Q ss_pred ceeccCC
Q 004038 468 ETLCDAD 474 (777)
Q Consensus 468 dtL~~~~ 474 (777)
++||+++
T Consensus 293 ~vl~~~~ 299 (396)
T PRK00049 293 QVLAKPG 299 (396)
T ss_pred eEEecCC
Confidence 9999875
No 39
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.6e-33 Score=314.64 Aligned_cols=276 Identities=27% Similarity=0.404 Sum_probs=214.4
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCC-ccccchhhhhhcceeEeeeEEEEEecCeEEEEEeC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~-~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
....+..+||+++||+|||||||+++|... ..+.|...... ..+|+.++|++||+|++.....+.+++.+++|+||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~---~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhH---HHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 344577899999999999999999999522 12222221112 25899999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcchHhHHHHHHHHhCCCcee
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 241 (777)
|||.+|...+..++..+|++++|||+.+|+..|+++++.++...++|. |+++||+|+...+ +..+.+.+
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~-------- 201 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM-------- 201 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999996 6789999986421 11111110
Q ss_pred EEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHH
Q 004038 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (777)
Q Consensus 242 ~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~ 321 (777)
++
T Consensus 202 ------------------------------------------------------------------------------~i 203 (447)
T PLN03127 202 ------------------------------------------------------------------------------EL 203 (447)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 01
Q ss_pred HHHHHhhhhcCcceeEeecccc---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeE
Q 004038 322 KKLIRKGTIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 391 (777)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~---~~~G-------i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 391 (777)
.+.+...-.....+|++++||+ ++.| +..|++++.+++|.|.. +.++||+
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------------------~~~~pfr 263 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------------------VLDKPFL 263 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------------------ccccceE
Confidence 1111100001123577777765 4444 78999999999997743 1368999
Q ss_pred EEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC----CceeecceeEEeccCceeecceeecCCEEEE--cCCC--c
Q 004038 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--D 463 (777)
Q Consensus 392 ~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~----~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~ 463 (777)
+.|..++..++.|.++.|||.+|++++||.|+..+. +...+|++|...+ .+++++.|||.+++ .|++ +
T Consensus 264 ~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~ 339 (447)
T PLN03127 264 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKRED 339 (447)
T ss_pred eeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHH
Confidence 999999999999999999999999999999987643 3567899997553 56899999999987 5664 4
Q ss_pred ccccceeccCC
Q 004038 464 TITGETLCDAD 474 (777)
Q Consensus 464 ~~~GdtL~~~~ 474 (777)
+.+|++||+++
T Consensus 340 i~rG~Vl~~~~ 350 (447)
T PLN03127 340 VQRGQVICKPG 350 (447)
T ss_pred CCCccEEecCC
Confidence 88999999864
No 40
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.6e-33 Score=317.85 Aligned_cols=273 Identities=27% Similarity=0.356 Sum_probs=222.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCccee------------eee-ecCCccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~------------g~v-~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
++..||+++||+|||||||+++|++..|.+... |.. ..+++++|+.++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 567899999999999999999999999987542 322 3346789999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC--CCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc---hHhHH
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN---FFRTR 228 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~--g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~---~~~~~ 228 (777)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ ++..++.+++..+...++| +++|+||+|+...+ +....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999888875 78899999987532 11222
Q ss_pred HHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 004038 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (777)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e 308 (777)
+++++.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222111
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 004038 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 376 (777)
Q Consensus 309 ~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~ 376 (777)
.........+|++++||++|.|+++ |+++|. .+|.|..
T Consensus 171 -----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~-~~~~~~~------------ 220 (425)
T PRK12317 171 -----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALD-NLKPPEK------------ 220 (425)
T ss_pred -----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHh-cCCCCcc------------
Confidence 1100011235799999999999975 888874 4665532
Q ss_pred ccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEE
Q 004038 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (777)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv 456 (777)
+.+.|+++.|..++..++.|+++.|+|.+|++++||.|...+.+...+|++|... ..+++.|.|||.|
T Consensus 221 --------~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 221 --------PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred --------ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 1368999999999999999999999999999999999999988888899998754 3679999999999
Q ss_pred EE--cCCC--cccccceeccCCC
Q 004038 457 AL--AGLK--DTITGETLCDADH 475 (777)
Q Consensus 457 ~i--~gl~--~~~~GdtL~~~~~ 475 (777)
++ .|++ ++.+|++|+++..
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEECCCCHHHccCccEecCCCC
Confidence 87 4553 4789999998754
No 41
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=7.9e-33 Score=318.91 Aligned_cols=311 Identities=24% Similarity=0.314 Sum_probs=240.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe-EEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDTPG~~ 166 (777)
.+.++|+++||+|||||||+++|... .. .....+|+|.+.....+.|.+. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~--~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT--KV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--Cc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 46689999999999999999999511 00 1122368898888888888655 89999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEecc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
+|...+.++++.+|++|+|+|+.+|+.+|+.++++.+...++|+++++||+|+.+.+.+++.+.+.+ ++..
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~-------- 217 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV-------- 217 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh--------
Confidence 9999999999999999999999999999999999999999999999999999987655444333321 0100
Q ss_pred CCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 004038 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (777)
Q Consensus 247 ~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~ 326 (777)
.+.|
T Consensus 218 ------------------------------------------------------------~~~~---------------- 221 (587)
T TIGR00487 218 ------------------------------------------------------------PEDW---------------- 221 (587)
T ss_pred ------------------------------------------------------------HHhc----------------
Confidence 0000
Q ss_pred hhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceE
Q 004038 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (777)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l 406 (777)
+.-.|++++||++|.|+++|+++|.... .. . ....+++.|+.++|++++.+++.|.+
T Consensus 222 -----~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~-~----------------~l~~~~~~~~~~~V~ev~~~~g~G~v 278 (587)
T TIGR00487 222 -----GGDTIFVPVSALTGDGIDELLDMILLQS-EV-E----------------ELKANPNGQASGVVIEAQLDKGRGPV 278 (587)
T ss_pred -----CCCceEEEEECCCCCChHHHHHhhhhhh-hh-c----------------cccCCCCCCceeEEEEEEEeCCCcEE
Confidence 1124788999999999999999997421 00 0 01224578999999999999999999
Q ss_pred EEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceeccCCC----------
Q 004038 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADH---------- 475 (777)
Q Consensus 407 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~---------- 475 (777)
++++|++|+|++||.|.+.+. ..+|+.++..+ ...+++|.||++|.|.|++++ .+||+|+-..+
T Consensus 279 ~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 279 ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999988753 23555555433 467899999999999999986 89999973211
Q ss_pred --------------ccccccCCC-----CCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecCh
Q 004038 476 --------------PILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 536 (777)
Q Consensus 476 --------------~~~l~~~~~-----~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~Ge 536 (777)
...++.+.. ..|.+.+.|++...+..+.|.++|+++..+++++.+-. .|.|.
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~---------~~vG~ 424 (587)
T TIGR00487 354 RAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH---------SGVGG 424 (587)
T ss_pred HHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE---------eecCC
Confidence 111222211 14889999999999999999999999999999988753 56777
Q ss_pred hh
Q 004038 537 LH 538 (777)
Q Consensus 537 lH 538 (777)
++
T Consensus 425 i~ 426 (587)
T TIGR00487 425 IT 426 (587)
T ss_pred Cc
Confidence 64
No 42
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-33 Score=296.76 Aligned_cols=273 Identities=28% Similarity=0.363 Sum_probs=221.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcce------------eeee-ecCCccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK------------IGEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~------------~g~v-~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
+...|++++||+|||||||+.+|+|.+|.+.. .|.- +.-++.+|..++|++||+|++.+...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 55789999999999999999999999998764 1110 1235899999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCCE-EEEEEccCCCCcc---
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN--- 223 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~--- 223 (777)
+.++++|||||.||..++..+..+||.+||||||..| ...||++++-+++..|+.. |+++||||...++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999988 8999999999999999987 5678999998765
Q ss_pred hHhHHHHHH---HHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHH
Q 004038 224 FFRTRDMIV---TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (777)
Q Consensus 224 ~~~~~~~i~---~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (777)
++++..++. +.+|.++.
T Consensus 165 f~ei~~~v~~l~k~~G~~~~------------------------------------------------------------ 184 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPK------------------------------------------------------------ 184 (428)
T ss_pred HHHHHHHHHHHHHHcCCCcc------------------------------------------------------------
Confidence 333333332 22233221
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCC
Q 004038 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAM 368 (777)
Q Consensus 301 ~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~ 368 (777)
-+|.+++||++|.|+. .||++|. .+..|..
T Consensus 185 ---------------------------------~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~---- 226 (428)
T COG5256 185 ---------------------------------DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER---- 226 (428)
T ss_pred ---------------------------------CCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC----
Confidence 1234445555555543 4777775 5554533
Q ss_pred CCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecc
Q 004038 369 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 448 (777)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~ 448 (777)
+ -+.||++-|.+++...+.|++..+||-+|.|++||+|+..+.+....|+++..- .++++
T Consensus 227 ---~-------------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~ 286 (428)
T COG5256 227 ---P-------------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEIS 286 (428)
T ss_pred ---C-------------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccc
Confidence 1 379999999999998889999999999999999999999998888889988754 58899
Q ss_pred eeecCCEEEE--cCC--CcccccceeccCCCccc
Q 004038 449 VALAGDIIAL--AGL--KDTITGETLCDADHPIL 478 (777)
Q Consensus 449 ~a~aGdIv~i--~gl--~~~~~GdtL~~~~~~~~ 478 (777)
.+.+||.+.+ .|+ +++++||++++.+++..
T Consensus 287 ~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 287 QAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred cCCCCCeEEEEecCCchhccCCccEeccCCCCcc
Confidence 9999999987 454 35999999998877654
No 43
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=9.6e-33 Score=308.44 Aligned_cols=271 Identities=24% Similarity=0.267 Sum_probs=209.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcce--eeeee-----cC--------CccccchhhhhhcceeEeeeEEEEEecCe
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYWNKH 155 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g~v~-----~g--------~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 155 (777)
.+|+++||+|||||||+++|++.+|.+.. .+.++ .| ++++|+.++|++||+|++.....+.|++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 37999999999999999999999998765 33222 22 46899999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHHHHHH
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTN 234 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~i~~~ 234 (777)
+++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++| +++|+||+|+...+ .+.++++.+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~ 159 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKD 159 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887 56799999987543 1122222111
Q ss_pred hCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCC
Q 004038 235 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGN 314 (777)
Q Consensus 235 l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~ 314 (777)
T Consensus 160 -------------------------------------------------------------------------------- 159 (406)
T TIGR02034 160 -------------------------------------------------------------------------------- 159 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccccccc
Q 004038 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382 (777)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 382 (777)
+...++.. ....+|++.+||++|.|++. |+++|.. +|.|..
T Consensus 160 ------~~~~~~~~--~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------ 212 (406)
T TIGR02034 160 ------YLAFAEQL--GFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------ 212 (406)
T ss_pred ------HHHHHHHc--CCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC------------------
Confidence 11111110 01125788899999999874 6676654 454432
Q ss_pred ccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcC--
Q 004038 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG-- 460 (777)
Q Consensus 383 ~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~g-- 460 (777)
+.+.|+++.|..++.....+.-..|+|.+|+|++||.|...+.+...+|++|...+ .++++|.|||.+++..
T Consensus 213 --~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~ 286 (406)
T TIGR02034 213 --AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD----GDLEQARAGQAVTLTLDD 286 (406)
T ss_pred --cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC----cccCEeCCCCEEEEEECC
Confidence 12578888776665332222225699999999999999998888888999997543 4689999999999853
Q ss_pred CCcccccceeccCCC
Q 004038 461 LKDTITGETLCDADH 475 (777)
Q Consensus 461 l~~~~~GdtL~~~~~ 475 (777)
.+++..|++||+++.
T Consensus 287 ~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 287 EIDISRGDLLAAADS 301 (406)
T ss_pred ccccCCccEEEcCCC
Confidence 334789999998765
No 44
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.2e-32 Score=308.48 Aligned_cols=274 Identities=28% Similarity=0.356 Sum_probs=218.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee-------eeec------CCccccchhhhhhcceeEeeeEEEEEec
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EVHE------GTATMDWMEQEQERGITITSAATTTYWN 153 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g-------~v~~------g~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 153 (777)
.+..+||+++||+|||||||+++|++.+|.+.... .... .++.+|+.+.|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35678999999999999999999999888765311 0011 2467999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC---CchHHHHHHHHHHHcCCC-EEEEEEccCCCCcch---Hh
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FR 226 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g---~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~---~~ 226 (777)
+..++|||||||.+|...+..+++.+|++|+|+|++++ ...++.+++..++..+++ +++|+||+|+...+. +.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 99999999999999999999999999999999999999 788888888888777764 678999999875321 11
Q ss_pred HHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHH
Q 004038 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (777)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l 306 (777)
+.+++++
T Consensus 164 ~~~ei~~------------------------------------------------------------------------- 170 (426)
T TIGR00483 164 IKKEVSN------------------------------------------------------------------------- 170 (426)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCC
Q 004038 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPE 374 (777)
Q Consensus 307 ~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~ 374 (777)
.++........+|++.+||++|.|+.+ |+++|.+ +|.|..
T Consensus 171 -----------------~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~---------- 222 (426)
T TIGR00483 171 -----------------LIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK---------- 222 (426)
T ss_pred -----------------HHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC----------
Confidence 111111111235788999999999874 8888854 555532
Q ss_pred CcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCC
Q 004038 375 NPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGD 454 (777)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGd 454 (777)
+.+.|+++.|..++..++.|+++.|||.+|+++.||.|.+.+.+...+|++|...+ .++++|.|||
T Consensus 223 ----------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~ 288 (426)
T TIGR00483 223 ----------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH----EQIEQAEPGD 288 (426)
T ss_pred ----------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC----cccCEEcCCC
Confidence 13689999999999999999999999999999999999999888888999997543 6789999999
Q ss_pred EEEE--cCC--CcccccceeccCCC
Q 004038 455 IIAL--AGL--KDTITGETLCDADH 475 (777)
Q Consensus 455 Iv~i--~gl--~~~~~GdtL~~~~~ 475 (777)
.+++ .++ +++++|++|++++.
T Consensus 289 ~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 289 NIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEEEECCCChhhcccceEEecCCC
Confidence 9988 454 34889999998654
No 45
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=5.3e-32 Score=306.86 Aligned_cols=277 Identities=24% Similarity=0.246 Sum_probs=211.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--eeee-------------ecCCccccchhhhhhcceeEeeeEEEEE
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEV-------------HEGTATMDWMEQEQERGITITSAATTTY 151 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g~v-------------~~g~~~~d~~~~e~~~g~Ti~~~~~~~~ 151 (777)
.+...||+++||+|+|||||+++|++.+|.+.. .+.+ ...++++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 366789999999999999999999999998765 2222 1234689999999999999999999999
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHH
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~ 230 (777)
+++++++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...+++ +|+|+||+|+...+. +.+++
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~ 182 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFER 182 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999988865 678999999875331 11121
Q ss_pred HHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004038 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (777)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 310 (777)
+.+.
T Consensus 183 i~~~---------------------------------------------------------------------------- 186 (474)
T PRK05124 183 IRED---------------------------------------------------------------------------- 186 (474)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1110
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 004038 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (777)
Q Consensus 311 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~~~ 378 (777)
+...+... ......|++++||++|.|++. |++++ +.+|.|..
T Consensus 187 ----------l~~~~~~~-~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~-------------- 240 (474)
T PRK05124 187 ----------YLTFAEQL-PGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV-------------- 240 (474)
T ss_pred ----------HHHHHHhc-CCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC--------------
Confidence 00001100 001235788899999999864 55544 55655532
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE
Q 004038 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (777)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (777)
..+.|+++.|..++...+...-..|+|.+|+|+.||.|+..+.+...+|++|...+ .+++.|.|||.+++
T Consensus 241 ------~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l 310 (474)
T PRK05124 241 ------VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITL 310 (474)
T ss_pred ------CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEE
Confidence 13678988887775432211124699999999999999999988889999998653 46899999999998
Q ss_pred cC--CCcccccceeccCCCc
Q 004038 459 AG--LKDTITGETLCDADHP 476 (777)
Q Consensus 459 ~g--l~~~~~GdtL~~~~~~ 476 (777)
.. ..++.+|++||+++.+
T Consensus 311 ~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 311 VLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred EeCCccccCCccEEECCCCC
Confidence 53 3348899999987544
No 46
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=2.4e-31 Score=310.11 Aligned_cols=312 Identities=22% Similarity=0.295 Sum_probs=235.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec----CeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~----~~~i~liDTP 163 (777)
.+.++|+|+||+|||||||+++|...... .+..+|+|.......+.|. +..++|||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~------------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTP 303 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA------------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTP 303 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc------------------cccCCccccccceEEEEEEecCCceEEEEEECC
Confidence 57789999999999999999999632221 1223677777666666553 5899999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.+|...+.++++.+|++|+|||+.+|+.+|+.+++..+...++|+|+|+||+|+...+..++.+++... +.
T Consensus 304 Ghe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l------ 376 (742)
T CHL00189 304 GHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL------ 376 (742)
T ss_pred cHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc------
Confidence 99999999999999999999999999999999999999999999999999999999876544433333210 00
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+.+ +
T Consensus 377 --------------------------------------------------------------l~e-----------~--- 380 (742)
T CHL00189 377 --------------------------------------------------------------IPE-----------K--- 380 (742)
T ss_pred --------------------------------------------------------------chH-----------h---
Confidence 000 0
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~ 403 (777)
.+..+|++++||++|.|+++|+++|..+...+. ..++++.|+.++|+++..|++.
T Consensus 381 -------~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 381 -------WGGDTPMIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred -------hCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCCC
Confidence 123468999999999999999999988743111 1234578999999999999999
Q ss_pred ceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCC-cccccceeccCCCcc-----
Q 004038 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLK-DTITGETLCDADHPI----- 477 (777)
Q Consensus 404 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-~~~~GdtL~~~~~~~----- 477 (777)
|.+++++|++|+|+.||.|.+.+ +.++|+.|.+....++++|.||++|.|.||+ ...+||+|.--.+.-
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~ 510 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLK 510 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHH
Confidence 99999999999999999999875 4567778887888899999999999999995 477899996321110
Q ss_pred ----------------cccc----CC-CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecCh
Q 004038 478 ----------------LLER----MD-FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 536 (777)
Q Consensus 478 ----------------~l~~----~~-~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~Ge 536 (777)
.+.. +. -..+.+.+-|.+...+-.+.|..+|.++..+. +.+. ++-+|.|.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i~-------i~~~~vG~ 581 (742)
T CHL00189 511 IIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQLN-------ILYASLGE 581 (742)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEEE-------EEEeecCC
Confidence 0000 00 01356777788888888888888888774432 2222 34566777
Q ss_pred hhH
Q 004038 537 LHL 539 (777)
Q Consensus 537 lHL 539 (777)
+.-
T Consensus 582 it~ 584 (742)
T CHL00189 582 VTE 584 (742)
T ss_pred CCH
Confidence 643
No 47
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-32 Score=272.23 Aligned_cols=274 Identities=27% Similarity=0.395 Sum_probs=212.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+...||+.|||+|||||||+.+|........ +.........|..|+|++|||||..+...++..+..+-.+|||||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 45678999999999999999999953221110 1111112346778999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCc-chHhHHHHHHHHhCCCceeEEe
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-NFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~-~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
||.++++.+..++|++||||.|.+|..+||++++.++++.|+|.| +++||+|..+. ++.+
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~elle------------------ 148 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLE------------------ 148 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHH------------------
Confidence 999999999999999999999999999999999999999999875 57899998752 2111
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
.+. .|+++.
T Consensus 149 -----------------------------------------------------lVe------------------mEvreL 157 (394)
T COG0050 149 -----------------------------------------------------LVE------------------MEVREL 157 (394)
T ss_pred -----------------------------------------------------HHH------------------HHHHHH
Confidence 111 122222
Q ss_pred HHhhhhcCcceeEeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (777)
|...-..+.-.||..+||++-. -|.+||+++.+|+|.|.. +.+.||.+-|-.
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--------------------~~dkPflmpvEd 217 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--------------------DIDKPFLMPVED 217 (394)
T ss_pred HHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--------------------ccccccccccee
Confidence 2222233455788888888643 267899999999999965 237999999999
Q ss_pred EeecCCCceEEEEEEEeeeecCCCeEEeCCCC--ceeecceeEEeccCceeecceeecCCEEEE--cCC--Cccccccee
Q 004038 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETL 470 (777)
Q Consensus 397 ~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL 470 (777)
++...++|++++|||-.|+|+.|+.+....-+ ++..+..+-++ ++..++..|||.+++ .|. +++..|.+|
T Consensus 218 vfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvL 293 (394)
T COG0050 218 VFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVL 293 (394)
T ss_pred eEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEe
Confidence 99999999999999999999999999876433 23345544333 356789999999876 454 358889999
Q ss_pred ccCCC
Q 004038 471 CDADH 475 (777)
Q Consensus 471 ~~~~~ 475 (777)
+.++.
T Consensus 294 akpgs 298 (394)
T COG0050 294 AKPGS 298 (394)
T ss_pred ecCCc
Confidence 87754
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-33 Score=283.38 Aligned_cols=274 Identities=29% Similarity=0.391 Sum_probs=217.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee-eeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g-~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.+...||+.|||+|||||||+-++..- ....| .........|..++|+.|||||......++...+.+--+|||||
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITki---la~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKI---LAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHH---HHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch
Confidence 456689999999999999999998421 11111 11111245688899999999999999999988999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCC-cchHhHHHHHHHHhCCCceeEE
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
.||++.++.+....|++|+||.|++|..+||++++.++++.|++.| +++||+|... .+.-+.++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE-------------- 193 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE-------------- 193 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHH--------------
Confidence 9999999999999999999999999999999999999999999975 5799999873 32211111
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
=|+++
T Consensus 194 ---------------------------------------------------------------------------mE~RE 198 (449)
T KOG0460|consen 194 ---------------------------------------------------------------------------MEIRE 198 (449)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 12233
Q ss_pred HHHhhhhcCcceeEeeccccCC-------CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKN-------KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 393 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~-------~G---i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 393 (777)
.|...-..+.-.||++|||+.- +| |..|||++.+|+|.|.. +-+.||.+-
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--------------------~~~~pFl~p 258 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--------------------DLDKPFLLP 258 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--------------------ccCCCceee
Confidence 3333333456689999999842 33 67899999999999965 237899999
Q ss_pred EEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCc--eeecceeEEeccCceeecceeecCCEEEE--cCCC--ccccc
Q 004038 394 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITG 467 (777)
Q Consensus 394 V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~G 467 (777)
|-.++..+++|+++.||+-.|+|++|+++-....++ +..|..|..++ ..+++|.|||.+++ .|++ +++.|
T Consensus 259 ie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRG 334 (449)
T KOG0460|consen 259 IEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRG 334 (449)
T ss_pred hhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcc
Confidence 999999999999999999999999999998765443 44567665543 56899999999986 6765 58999
Q ss_pred ceeccCCCc
Q 004038 468 ETLCDADHP 476 (777)
Q Consensus 468 dtL~~~~~~ 476 (777)
.+++.++..
T Consensus 335 mvl~~pGsv 343 (449)
T KOG0460|consen 335 MVLAKPGSV 343 (449)
T ss_pred cEEecCCcc
Confidence 999987754
No 49
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.98 E-value=4.3e-31 Score=295.89 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=203.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--------------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-------------- 152 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-------------- 152 (777)
.+...||+++||+|||||||+.+|. | ..+|.+++|++||+|++..+..+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt---g------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~ 95 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS---G------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQS 95 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh---C------------CCcccchhhHHhCCchhccccccccccCcccCCcccccc
Confidence 3556899999999999999999994 2 3457788999999999988876521
Q ss_pred -c------------------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-CchHHHHHHHHHHHcCCC-EE
Q 004038 153 -N------------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP-RI 211 (777)
Q Consensus 153 -~------------------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-~~~~~~~~~~~~~~~~~p-~i 211 (777)
. ...++|||||||.+|..++..++..+|++++||||.+| +++||++++..+...+++ +|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 96 YGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred cCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEE
Confidence 0 24799999999999999999999999999999999997 799999999999999987 57
Q ss_pred EEEEccCCCCcc-hHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHH
Q 004038 212 CFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE 290 (777)
Q Consensus 212 iviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 290 (777)
+|+||+|+...+ ..+..+++++.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~-------------------------------------------------------- 199 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNF-------------------------------------------------------- 199 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 899999987422 22222222211
Q ss_pred HHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCC
Q 004038 291 YRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKG 370 (777)
Q Consensus 291 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~ 370 (777)
++.. .....|++++||++|.|++.|+++|.+.+|.|..
T Consensus 200 ----------------------------------l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r------ 237 (460)
T PTZ00327 200 ----------------------------------VKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR------ 237 (460)
T ss_pred ----------------------------------HHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC------
Confidence 1100 0134689999999999999999999999988743
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEeecC--------CCceEEEEEEEeeeecCCCeEEeCCCC-------------c
Q 004038 371 TDPENPEATLERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKG-------------K 429 (777)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~--------~~G~l~~~RV~sG~l~~g~~v~~~~~~-------------~ 429 (777)
+.+.|+.++|...+... ++|.++.|+|.+|++++||.|...+.+ .
T Consensus 238 --------------~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~ 303 (460)
T PTZ00327 238 --------------DLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPI 303 (460)
T ss_pred --------------CCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccc
Confidence 12678999998776443 379999999999999999999988643 2
Q ss_pred eeecceeEEeccCceeecceeecCCEEEEc-----CCC--cccccceeccCCC
Q 004038 430 KERIGRLLEMHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (777)
Q Consensus 430 ~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl~--~~~~GdtL~~~~~ 475 (777)
..+|++|... ..++++|.|||.++|. ++. ++..|++|++++.
T Consensus 304 ~~~VksI~~~----~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 304 RTRIVSLFAE----NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred eEEEEEEEEC----CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 3578888653 4789999999999984 332 3678999998654
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=1.9e-30 Score=301.40 Aligned_cols=251 Identities=21% Similarity=0.256 Sum_probs=205.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcchHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (777)
.|+++||+|||||||+++|. | ..+|..++|+++|+|+......+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 58999999999999999994 3 2257788899999999998877765 467899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcc-hHhHHHHHHHHhCCCceeEEeccCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGA 248 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (777)
.+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ +....+++++.+
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l------------- 133 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL------------- 133 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999996 6899999986422 222222222111
Q ss_pred CCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004038 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (777)
Q Consensus 249 ~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~ 328 (777)
...
T Consensus 134 -----------------------------------------------------------------------------~~~ 136 (614)
T PRK10512 134 -----------------------------------------------------------------------------REY 136 (614)
T ss_pred -----------------------------------------------------------------------------Hhc
Confidence 100
Q ss_pred hhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEE
Q 004038 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (777)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~ 408 (777)
.....|++++||++|.|++.|++.|.++. .|.. ..++|+++.|..++..++.|+++.
T Consensus 137 --~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~--------------------~~~~~~rl~Id~vf~v~G~GtVvt 193 (614)
T PRK10512 137 --GFAEAKLFVTAATEGRGIDALREHLLQLP-EREH--------------------AAQHRFRLAIDRAFTVKGAGLVVT 193 (614)
T ss_pred --CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-cccc--------------------CcCCCceEEEEEEeccCCCeEEEE
Confidence 01135899999999999999999998764 3422 126899999999999999999999
Q ss_pred EEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cC-CC--cccccceeccCC
Q 004038 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 474 (777)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~GdtL~~~~ 474 (777)
|+|.+|++++||.|.+.+.+...+|++|... ..++++|.||+.+++ .| ++ ++..||+|++++
T Consensus 194 Gtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 194 GTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEecceEecCCEEEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 9999999999999999888888889988753 367999999999988 44 43 488999999763
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=1.1e-29 Score=283.91 Aligned_cols=259 Identities=22% Similarity=0.325 Sum_probs=202.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 153 (777)
+...||+++||.|||||||+++|. + .++|+.+.|++||+|+..+...+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~---~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT---G------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh---C------------eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 556899999999999999999993 2 24788999999999999876554432
Q ss_pred ------------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCCC-EEEEEEccCC
Q 004038 154 ------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDR 219 (777)
Q Consensus 154 ------------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~iiviNKiD~ 219 (777)
.+.++|||||||.+|..++..++..+|++++|+|+.++. ..++.+++..+...+++ +++|+||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 268999999999999999999999999999999999998 89999999998888874 7889999998
Q ss_pred CCcch-HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHH
Q 004038 220 LGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIET 298 (777)
Q Consensus 220 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~ 298 (777)
...+. ....+++++
T Consensus 152 ~~~~~~~~~~~~i~~----------------------------------------------------------------- 166 (411)
T PRK04000 152 VSKERALENYEQIKE----------------------------------------------------------------- 166 (411)
T ss_pred ccchhHHHHHHHHHH-----------------------------------------------------------------
Confidence 75321 111111111
Q ss_pred HHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 004038 299 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (777)
Q Consensus 299 ~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~ 378 (777)
++. .. .....|++.+||++|.|++.|++.|.+.+|.|..
T Consensus 167 -----------~l~--------------~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~-------------- 205 (411)
T PRK04000 167 -----------FVK--------------GT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER-------------- 205 (411)
T ss_pred -----------Hhc--------------cc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC--------------
Confidence 000 00 0123589999999999999999999999987743
Q ss_pred ccccccCCCCCeEEEEEEEeec--------CCCceEEEEEEEeeeecCCCeEEeCCCCc------------eeecceeEE
Q 004038 379 TLERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLE 438 (777)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~~--------~~~G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~ 438 (777)
+.+.|+++.|.+++.. +++|.+..|||.+|++++||.|...+.+. ..+|++|..
T Consensus 206 ------~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~ 279 (411)
T PRK04000 206 ------DLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA 279 (411)
T ss_pred ------CCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE
Confidence 1268899999988743 34677999999999999999999987542 357888864
Q ss_pred eccCceeecceeecCCEEEEc-----CC--CcccccceeccCCCcc
Q 004038 439 MHANSREDVKVALAGDIIALA-----GL--KDTITGETLCDADHPI 477 (777)
Q Consensus 439 ~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~GdtL~~~~~~~ 477 (777)
. ..++++|.|||.+++. ++ +++.+|++||+++.+.
T Consensus 280 ~----~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~ 321 (411)
T PRK04000 280 G----GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLP 321 (411)
T ss_pred C----CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCC
Confidence 4 3779999999999884 33 2377899999876543
No 52
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=298.44 Aligned_cols=276 Identities=25% Similarity=0.246 Sum_probs=209.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--ee-----eeecC--------CccccchhhhhhcceeEeeeEEEEE
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IG-----EVHEG--------TATMDWMEQEQERGITITSAATTTY 151 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g-----~v~~g--------~~~~d~~~~e~~~g~Ti~~~~~~~~ 151 (777)
.+...||+|+||+|||||||+++|++.+|.+.. ++ ....| ++.+|..++|++||+|++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345578999999999999999999999998752 11 11123 3689999999999999999999999
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHH
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~ 230 (777)
+++.+++|||||||.+|...+..++..+|++++|||+.+|+..|+++++..+...+++ +++|+||+|+...+.+ .+++
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~~ 179 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFDE 179 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHHH
Confidence 9999999999999999999999999999999999999999999999999999988865 5679999998643211 1111
Q ss_pred HHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004038 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (777)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 310 (777)
+..
T Consensus 180 i~~----------------------------------------------------------------------------- 182 (632)
T PRK05506 180 IVA----------------------------------------------------------------------------- 182 (632)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 004038 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (777)
Q Consensus 311 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~~~~~~~~~ 378 (777)
++...+.+. .....|++++||++|.|+. .|++.|.. +|.|..
T Consensus 183 ---------~i~~~~~~~--~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~-------------- 236 (632)
T PRK05506 183 ---------DYRAFAAKL--GLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASD-------------- 236 (632)
T ss_pred ---------HHHHHHHHc--CCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCC--------------
Confidence 011111100 0122468888999999986 47776644 443322
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE
Q 004038 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (777)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (777)
..+.|+++.|..++...+.+.-..|+|.+|++++||.|...+.+...+|++|...+ .++++|.|||.+++
T Consensus 237 ------~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~i 306 (632)
T PRK05506 237 ------RNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD----GDLDEAFAGQAVTL 306 (632)
T ss_pred ------cCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECC----ceeCEEcCCCeEEE
Confidence 12678888777765433212225699999999999999999888889999997543 45899999999998
Q ss_pred cC--CCcccccceeccCCCc
Q 004038 459 AG--LKDTITGETLCDADHP 476 (777)
Q Consensus 459 ~g--l~~~~~GdtL~~~~~~ 476 (777)
.- -.++.+|++||+++.+
T Consensus 307 ~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 307 TLADEIDISRGDMLARADNR 326 (632)
T ss_pred EecCccccCCccEEecCCCC
Confidence 53 2347899999987654
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=1.9e-30 Score=260.59 Aligned_cols=145 Identities=37% Similarity=0.491 Sum_probs=128.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE--ecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDTPG~ 165 (777)
+++|||+++||+|||||||+++|++..+.....+....+.+..|+.+.|+++|+|+......+. +.++.++|||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 4689999999999999999999999998776654433334678999999999999999999999 99999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHH
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~ 232 (777)
.+|..++.++++.+|++|+|||+.+|+..++.++++.+...++|+++|+||||+...++.+.++++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998555555555444
No 54
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=5.3e-29 Score=278.57 Aligned_cols=257 Identities=22% Similarity=0.332 Sum_probs=200.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 153 (777)
+...||+++||+|||||||+++|. + ..+|..+.|++||+|+......+.+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 66 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTE 66 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---C------------eecccCHhHHHcCceeEecccccccccccccCcccccccc
Confidence 346799999999999999999993 2 23688899999999999886654321
Q ss_pred ------------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCCC-EEEEEEccCC
Q 004038 154 ------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDR 219 (777)
Q Consensus 154 ------------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~iiviNKiD~ 219 (777)
+..++|||||||.+|...+..++..+|++++|||+.+|. ..|+.+++..+...+++ +++|+||+|+
T Consensus 67 ~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 67 PVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 368999999999999999999999999999999999998 89999999998888875 7889999998
Q ss_pred CCcch-HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHH
Q 004038 220 LGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIET 298 (777)
Q Consensus 220 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~ 298 (777)
...+. ....+++.+
T Consensus 147 ~~~~~~~~~~~~i~~----------------------------------------------------------------- 161 (406)
T TIGR03680 147 VSKEKALENYEEIKE----------------------------------------------------------------- 161 (406)
T ss_pred CCHHHHHHHHHHHHh-----------------------------------------------------------------
Confidence 75321 111111111
Q ss_pred HHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 004038 299 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (777)
Q Consensus 299 ~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~ 378 (777)
.+... ....+|++++||++|.|++.|+++|.+.+|.|..
T Consensus 162 -------------------------~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~-------------- 200 (406)
T TIGR03680 162 -------------------------FVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPER-------------- 200 (406)
T ss_pred -------------------------hhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC--------------
Confidence 00000 0113589999999999999999999999987743
Q ss_pred ccccccCCCCCeEEEEEEEeecC--------CCceEEEEEEEeeeecCCCeEEeCCCCc------------eeecceeEE
Q 004038 379 TLERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLE 438 (777)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~~~--------~~G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~ 438 (777)
+.+.|+.+.|..++... ++|.+..|||.+|+|++||.|...+.+. ..+|++|..
T Consensus 201 ------~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~ 274 (406)
T TIGR03680 201 ------DLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA 274 (406)
T ss_pred ------CCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE
Confidence 13678999999887543 3678999999999999999999876531 347888864
Q ss_pred eccCceeecceeecCCEEEEc-----CCC--cccccceeccCCC
Q 004038 439 MHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (777)
Q Consensus 439 ~~g~~~~~v~~a~aGdIv~i~-----gl~--~~~~GdtL~~~~~ 475 (777)
. ..++++|.|||.++|. +++ ++.+|++|++++.
T Consensus 275 ~----~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 275 G----GYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred C----CEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 3 3789999999999983 332 3678999998764
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=8.6e-29 Score=287.00 Aligned_cols=253 Identities=22% Similarity=0.274 Sum_probs=205.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++||+|||||||+++|. |. .+|..+.|.++|+|++.....+.+++..++|||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g~------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---GI------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---Cc------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 79999999999999999994 21 1466778899999999999889998899999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc-hHhHHHHHHHHhCCCceeEEeccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (777)
+..++..+|++++|||+.+|+.+|+.+++..+...++| +++|+||+|+.+.+ ++...+++++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~---------------- 130 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQ---------------- 130 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHH----------------
Confidence 99999999999999999999999999999999999999 89999999987532 1111111111
Q ss_pred CCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 004038 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (777)
Q Consensus 250 ~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~ 329 (777)
.+....
T Consensus 131 --------------------------------------------------------------------------~l~~~~ 136 (581)
T TIGR00475 131 --------------------------------------------------------------------------ILNSYI 136 (581)
T ss_pred --------------------------------------------------------------------------HHHHhC
Confidence 011000
Q ss_pred hcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEE
Q 004038 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (777)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~ 409 (777)
.....|++.+||++|.|++++++.+.+.++..... ..++|+++.|..++..++.|+++.|
T Consensus 137 -~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 137 -FLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred -CCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 00125899999999999999999998876543210 1368999999999999999999999
Q ss_pred EEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCC--cccccceeccC
Q 004038 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDA 473 (777)
Q Consensus 410 RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~ 473 (777)
+|.+|+++.||+|...+.+...+|++|... ..++++|.||+.++| .|++ ++..|.+++++
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 999999999999999998888999999753 367999999999998 4443 36788666543
No 56
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-27 Score=256.32 Aligned_cols=249 Identities=25% Similarity=0.353 Sum_probs=210.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
.|+..||.+||||||+.++. | ...|..++|++||+|++....++...++.+.|||.|||.+|...
T Consensus 2 ii~t~GhidHgkT~L~~alt---g------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c------------cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 58999999999999999993 2 45688999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcc-hHhHHHHHHHHhCCCceeEEeccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (777)
+..++...|.+++|||+.+|++.||.+++..++..|++. ++|+||+|+.+.. .++..++|.+.+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------- 132 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL-------------- 132 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc--------------
Confidence 999999999999999999999999999999999999999 8999999997632 111122211100
Q ss_pred CCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhh
Q 004038 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (777)
Q Consensus 250 ~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~ 329 (777)
.
T Consensus 133 ----------------------------------------------------------------------------~--- 133 (447)
T COG3276 133 ----------------------------------------------------------------------------S--- 133 (447)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred hcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEE
Q 004038 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (777)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~ 409 (777)
-...|+|..|+.+|.||++|-+.|.+..- +.+ .+.+.|++.+|...|..+++|+++.|
T Consensus 134 --l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 --LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred --cccccccccccccCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEe
Confidence 11246889999999999999999988763 222 13489999999999999999999999
Q ss_pred EEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc--CC--CcccccceeccCC
Q 004038 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLCDAD 474 (777)
Q Consensus 410 RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~GdtL~~~~ 474 (777)
-++||+++.||+++..+.++..+|++|.... +++++|.||+.|++. |. +.+..|+.|.++.
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999999999999999997543 679999999999983 33 2367899998764
No 57
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.5e-27 Score=256.21 Aligned_cols=253 Identities=28% Similarity=0.351 Sum_probs=201.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec---CeEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDTPG 164 (777)
.+.+-|+++||+|||||||++.+-..+- . .....|||.+...+.+.++ ...++||||||
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~V---a---------------~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG 64 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNV---A---------------AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG 64 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcc---c---------------cccCCceeeEeeeEEEEeccCCCceEEEEcCCc
Confidence 3567899999999999999999951111 1 1124689999999999884 46899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
|.-|.....++...+|.++||||+.+|+++||.+.++.++..++|+++++||+|++.+++++...++++. |..+
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~----- 138 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVP----- 138 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCH-----
Confidence 9999999999999999999999999999999999999999999999999999999999888877777652 2110
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
|.|
T Consensus 139 ---------------------------------------------------------------E~~-------------- 141 (509)
T COG0532 139 ---------------------------------------------------------------EEW-------------- 141 (509)
T ss_pred ---------------------------------------------------------------hhc--------------
Confidence 111
Q ss_pred HHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCc
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G 404 (777)
+..+.++.+||++|.|+++||++|.-..- ....+.+++++..+.|....-+++.|
T Consensus 142 -------gg~v~~VpvSA~tg~Gi~eLL~~ill~ae------------------v~elka~~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 142 -------GGDVIFVPVSAKTGEGIDELLELILLLAE------------------VLELKANPEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -------CCceEEEEeeccCCCCHHHHHHHHHHHHH------------------HHhhhcCCCCcceEEEEEEEeccCCC
Confidence 22256888999999999999999975321 11345567899999999999999999
Q ss_pred eEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceec
Q 004038 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLC 471 (777)
Q Consensus 405 ~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~ 471 (777)
.++..-|+.|||+.||.|...... +.+..|......+++.+.++--+-+.|++++ ..||...
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~-----g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~ 259 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY-----GRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFI 259 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC-----CceEEeehhcCCCccccCCCCCeEEeccccccccCceEE
Confidence 999999999999999999876533 2333444455577888888877778888774 3466554
No 58
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.8e-27 Score=254.73 Aligned_cols=254 Identities=26% Similarity=0.347 Sum_probs=207.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~ 165 (777)
.++.+.|-|+||+|||||||+++|-... -..+ ...|||.....+.... +|..++|+|||||
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~---VAA~---------------E~GGITQhIGAF~V~~p~G~~iTFLDTPGH 211 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSS---VAAG---------------EAGGITQHIGAFTVTLPSGKSITFLDTPGH 211 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCc---eehh---------------hcCCccceeceEEEecCCCCEEEEecCCcH
Confidence 3578899999999999999999995211 1111 1357888887776655 6789999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.-|.....++...+|.++|||.|.+|+.+||.+.+..++..++|+|+.+||+|+++++++++..++... |.
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi-------- 282 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI-------- 282 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc--------
Confidence 999999999999999999999999999999999999999999999999999999999998888777531 10
Q ss_pred cCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHH
Q 004038 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (777)
Q Consensus 246 i~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l 325 (777)
.+|.|
T Consensus 283 ------------------------------------------------------------~~E~~--------------- 287 (683)
T KOG1145|consen 283 ------------------------------------------------------------VVEDL--------------- 287 (683)
T ss_pred ------------------------------------------------------------cHHHc---------------
Confidence 01111
Q ss_pred HhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCce
Q 004038 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (777)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~ 405 (777)
+--++++..||++|.|++.|.+++.-.. .....+.+|++|+.++|....-|+++|.
T Consensus 288 ------GGdVQvipiSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 288 ------GGDVQVIPISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred ------CCceeEEEeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccc
Confidence 2225788999999999999999987542 1223456789999999999999999999
Q ss_pred EEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceec
Q 004038 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLC 471 (777)
Q Consensus 406 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~ 471 (777)
++.+-|-.|||++|+.+.... .-.||+.++-.+| .++++|.||.-+-|.|++++ ..||-+.
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred eeEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEE
Confidence 999999999999999997653 2356777776665 67999999999999999985 5587653
No 59
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=2.6e-27 Score=242.39 Aligned_cols=129 Identities=48% Similarity=0.632 Sum_probs=118.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec----------CeEEEEE
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHRINII 160 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------~~~i~li 160 (777)
|||+++||+|||||||+++|++.+|.+.... ...++++|+.+.|++||+|+.++..++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 7999999999999999999999998765442 223578999999999999999998888886 7889999
Q ss_pred eCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 161 DTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
|||||.+|..++..+++.+|++++|+|+.+|+..+++++++.+...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 60
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.95 E-value=2.4e-26 Score=265.89 Aligned_cols=304 Identities=20% Similarity=0.249 Sum_probs=193.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee--ecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v--~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.+.+.|+++||+|||||||+|+|..........|.. +-|.+..++...+...|.+.......+.+. .++|||||||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCCh
Confidence 356789999999999999999995322211112211 112222222111111222111100111111 3799999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC-cchHhHHHHHHHHhCCCceeEEe
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~-~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
.+|...+.++++.+|++++|+|+.+|+..++.+++..+...++|+++++||+|+.. .....- ..+.+.+..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~------- 153 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK------- 153 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh-------
Confidence 99999999999999999999999999999999999999999999999999999852 110000 000000000
Q ss_pred ccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~ 324 (777)
-+....+.+.+...++ ..+|.+..+..+.+..
T Consensus 154 -----------------------------------~~~~v~~~f~~~l~ev------------~~~L~~~g~~~e~~~~- 185 (586)
T PRK04004 154 -----------------------------------QSQRVQQELEEKLYEL------------IGQLSELGFSADRFDR- 185 (586)
T ss_pred -----------------------------------hhHHHHHHHHHHHHHH------------HHHHHhcCCChhhhhh-
Confidence 0000111111111111 1233333333333222
Q ss_pred HHhhhhcCcceeEeeccccCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeec
Q 004038 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 400 (777)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~----~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~ 400 (777)
++. ....+|++++||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.+
T Consensus 186 ~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~~~ 243 (586)
T PRK04004 186 VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVKEE 243 (586)
T ss_pred hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEEEe
Confidence 111 134578999999999999999998864 3444433 23578999999999999
Q ss_pred CCCceEEEEEEEeeeecCCCeEEeCCCCc--eeecceeEEec--------cCceeecceeecCCEEEE--cCCCcccccc
Q 004038 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGE 468 (777)
Q Consensus 401 ~~~G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (777)
++.|++++++|++|+|++||.|...+.+. ..+|+.|+... ++....++++.|..-+-| .||+++..|+
T Consensus 244 ~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~ 323 (586)
T PRK04004 244 RGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGS 323 (586)
T ss_pred CCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCC
Confidence 99999999999999999999998877653 35888887652 224466777777665555 4888887787
Q ss_pred eec
Q 004038 469 TLC 471 (777)
Q Consensus 469 tL~ 471 (777)
.+.
T Consensus 324 ~~~ 326 (586)
T PRK04004 324 PLR 326 (586)
T ss_pred eEE
Confidence 764
No 61
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.2e-26 Score=234.74 Aligned_cols=308 Identities=23% Similarity=0.347 Sum_probs=220.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------- 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--------------- 152 (777)
+.-.||+++||++||||||+.+|. | .++|.+.+|-+||+||+..++....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als---G------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS---G------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred CcceEeeeeeecccchhhheehhh---c------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 456799999999999999999993 3 4578899999999999998876543
Q ss_pred ---c--------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-CchHHHHHHHHHHHcCCCEEE-EEEccCC
Q 004038 153 ---N--------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRIC-FVNKMDR 219 (777)
Q Consensus 153 ---~--------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-~~~~~~~~~~~~~~~~~p~ii-viNKiD~ 219 (777)
. -+++.|+|+|||+-+...+..+....|++||||+|++. .++||++++-.+.-.|+..++ +=||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 0 14789999999999999999999999999999999976 589999999999999988755 5699998
Q ss_pred CCcchHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHH
Q 004038 220 LGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (777)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (777)
...+ +
T Consensus 153 V~~E--~------------------------------------------------------------------------- 157 (415)
T COG5257 153 VSRE--R------------------------------------------------------------------------- 157 (415)
T ss_pred ecHH--H-------------------------------------------------------------------------
Confidence 7642 1
Q ss_pred HhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 004038 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (777)
Q Consensus 300 ~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~ 379 (777)
.+|.| +++++.++..++. -.|++..||.++.+++.|+++|.+++|.|..
T Consensus 158 ------AlE~y--------~qIk~FvkGt~Ae--~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--------------- 206 (415)
T COG5257 158 ------ALENY--------EQIKEFVKGTVAE--NAPIIPISAQHKANIDALIEAIEKYIPTPER--------------- 206 (415)
T ss_pred ------HHHHH--------HHHHHHhcccccC--CCceeeehhhhccCHHHHHHHHHHhCCCCcc---------------
Confidence 11112 2222222222221 2488999999999999999999999999965
Q ss_pred cccccCCCCCeEEEEEEEeecC--------CCceEEEEEEEeeeecCCCeEEeCCC-----Ccee----ecceeEEeccC
Q 004038 380 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK-----GKKE----RIGRLLEMHAN 442 (777)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~~~--------~~G~l~~~RV~sG~l~~g~~v~~~~~-----~~~~----ki~~i~~~~g~ 442 (777)
|.+.|..++|.+.|... -.|-+.-|-+..|.|+.||.|.+-+. +.+. -...|..+++.
T Consensus 207 -----d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag 281 (415)
T COG5257 207 -----DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG 281 (415)
T ss_pred -----CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC
Confidence 35788899999998632 34668889999999999999986432 1111 13445555544
Q ss_pred ceeecceeecCCEEEE-cCCCc-ccccceeccCCCccccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEE
Q 004038 443 SREDVKVALAGDIIAL-AGLKD-TITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHF 520 (777)
Q Consensus 443 ~~~~v~~a~aGdIv~i-~gl~~-~~~GdtL~~~~~~~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v 520 (777)
. ..+++|.+|-.++| ++|+- +.++|-|...- .=.+=..|+...++.++.. -|+++.-.+-.+++
T Consensus 282 ~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V---~G~pG~lPpv~~~~~ie~~----------LL~RvvG~~~e~kv 347 (415)
T COG5257 282 G-EDVEEARPGGLVGVGTKLDPTLTKADALVGQV---VGKPGTLPPVWTSIRIEYH----------LLERVVGTKEELKV 347 (415)
T ss_pred C-eeeeeccCCceEEEecccCcchhhhhhhcccc---ccCCCCCCCceEEEEEEee----------ehhhhhCccccccc
Confidence 3 67999999999998 56765 34466554320 0011123344455555532 24444555555666
Q ss_pred EEcCCCCeEEEEecCh
Q 004038 521 SRDEEINQTVIEGMGE 536 (777)
Q Consensus 521 ~~~~etge~il~g~Ge 536 (777)
+.- .++|.++...|.
T Consensus 348 epi-k~~E~Lml~VGt 362 (415)
T COG5257 348 EPI-KTNEVLMLNVGT 362 (415)
T ss_pred ccc-cCCCeEEEEeec
Confidence 542 578888776664
No 62
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=236.92 Aligned_cols=286 Identities=25% Similarity=0.339 Sum_probs=222.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCC----ccccchhhhhhcceeEeeeEEEEEec---------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWN--------- 153 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~----~~~d~~~~e~~~g~Ti~~~~~~~~~~--------- 153 (777)
.+...+|+..||+|||||||+.+|. + |..++|. .+.|..+.|.++|.|.+.+..-+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--t------G~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--T------GRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--e------cCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 4567899999999999999999996 3 4445543 67899999999999988888877662
Q ss_pred --------------CeEEEEEeCCCCcchHHHHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 154 --------------KHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 154 --------------~~~i~liDTPG~~df~~~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
++.+.|+||-||..+...+++++ ...|..+++|.|.+|++..|++++-.+...++|+|++++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 35689999999999999999998 56799999999999999999999999999999999999999
Q ss_pred CCCCc-chHhHHHHHHHHhCCC-ceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHH
Q 004038 218 DRLGA-NFFRTRDMIVTNLGAK-PLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (777)
Q Consensus 218 D~~~~-~~~~~~~~i~~~l~~~-~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (777)
|.... .+..+.++|.+.|..- -+|+ ++.
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~--~vk------------------------------------------------ 295 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPL--IVK------------------------------------------------ 295 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccce--eee------------------------------------------------
Confidence 98764 4777888887766540 0111 000
Q ss_pred HHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcC-cceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 004038 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPE 374 (777)
Q Consensus 296 ~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~-~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~ 374 (777)
+.|| ...+. .+...+ .++|+|.+|+.+|.|++ +|+.+..+||.-..
T Consensus 296 -----~~~d----------------~v~aa-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~---------- 342 (527)
T COG5258 296 -----DTDD----------------VVLAA-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR---------- 342 (527)
T ss_pred -----ccch----------------hHHhh-hhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc----------
Confidence 0011 00000 112233 48999999999999998 66667788875421
Q ss_pred CcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--C--ceeecceeEEeccCceeeccee
Q 004038 375 NPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--G--KKERIGRLLEMHANSREDVKVA 450 (777)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a 450 (777)
.+..+||.+||.|++...++|.++.|-|-+|.++.||+++..+. | +..+|++|..- ...|++|
T Consensus 343 ---------~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa 409 (527)
T COG5258 343 ---------WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSA 409 (527)
T ss_pred ---------cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccc
Confidence 12479999999999999999999999999999999999998653 2 34678888643 4679999
Q ss_pred ecCCEEEE--cCCCc--ccccceeccCCCc
Q 004038 451 LAGDIIAL--AGLKD--TITGETLCDADHP 476 (777)
Q Consensus 451 ~aGdIv~i--~gl~~--~~~GdtL~~~~~~ 476 (777)
.||+|+++ .|.+. +..|.+|+....|
T Consensus 410 ~aG~iig~Al~gv~~e~lerGMVl~~~~~p 439 (527)
T COG5258 410 KAGSIIGIALKGVEKEELERGMVLSAGADP 439 (527)
T ss_pred cCCcEEEEEecccCHHHHhcceEecCCCCc
Confidence 99999876 56554 7889998765333
No 63
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3e-26 Score=251.11 Aligned_cols=283 Identities=22% Similarity=0.296 Sum_probs=210.5
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce------------eeee-ecCCccccchhhhhhcceeEeeeEEEEEe
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK------------IGEV-HEGTATMDWMEQEQERGITITSAATTTYW 152 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~------------~g~v-~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~ 152 (777)
.++...+.+++||+|+|||||..+|||..|.+.. .|.- ...++++|...+|++||+|++.....|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 4557789999999999999999999999997753 2211 33468999999999999999999999999
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCCE-EEEEEccCCCCcc-
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN- 223 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~- 223 (777)
+.+.++|+|+|||.||..+++.+...||.++||||++.| ...||+++...++.+|+.. +|++||||..+++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 999999999999999999999999999999999999954 3589999999999999986 5679999999876
Q ss_pred --hHhHHHHHHHHh----CCCcee-EEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHH
Q 004038 224 --FFRTRDMIVTNL----GAKPLV-VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMI 296 (777)
Q Consensus 224 --~~~~~~~i~~~l----~~~~~~-~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 296 (777)
++++...+...| |..... -.+|+..- .|....
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl---------------------~GeNL~-------------------- 371 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGL---------------------SGENLI-------------------- 371 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccc---------------------cCCccc--------------------
Confidence 333333433333 111110 01111100 000000
Q ss_pred HHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 004038 297 ETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENP 376 (777)
Q Consensus 297 e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~ 376 (777)
...++..+-+|++| ..||+.|.. +-.|...
T Consensus 372 ---k~~~~~~l~~WY~G-----------------------------------p~LL~~id~-~~~p~~~----------- 401 (603)
T KOG0458|consen 372 ---KIEQENELSQWYKG-----------------------------------PTLLSQIDS-FKIPERP----------- 401 (603)
T ss_pred ---ccccchhhhhhhcC-----------------------------------ChHHHHHhh-ccCCCCc-----------
Confidence 00011122223332 247777766 4444331
Q ss_pred ccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEE
Q 004038 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (777)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv 456 (777)
-+.||++-|..++..+..|...+|||-+|.+.+||+||+.+......|.+|-.= -.+...+.|||-|
T Consensus 402 ---------~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~~~~a~AGD~V 468 (603)
T KOG0458|consen 402 ---------IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEPKTWAVAGDNV 468 (603)
T ss_pred ---------ccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCcceeEeeCCEE
Confidence 256999999999999999999999999999999999999988877788887532 4678889999999
Q ss_pred EE--cCCC--cccccceecc
Q 004038 457 AL--AGLK--DTITGETLCD 472 (777)
Q Consensus 457 ~i--~gl~--~~~~GdtL~~ 472 (777)
.+ .|+. .+..||++++
T Consensus 469 sl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 469 SLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred EEecCccChhhcccceeeec
Confidence 87 4432 3788999985
No 64
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=2.7e-26 Score=230.97 Aligned_cols=129 Identities=30% Similarity=0.440 Sum_probs=115.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
..||+++||+|+|||||+++|++.+. ..|... .+...+|+.+.|++||+|++.....+.+++.+++|+|||||.+|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH
Confidence 36999999999999999999987643 222221 23467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~ 221 (777)
..++..++..+|++++|||+.+|+..++++++..+...++| +|+|+||+|+..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999998 668999999863
No 65
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.94 E-value=2.1e-24 Score=248.72 Aligned_cols=288 Identities=22% Similarity=0.291 Sum_probs=186.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----------------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 152 (777)
+.+.|+++||+|||||||+|+|....-.... ..|+|.+.....+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e------------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKRE------------------AGGITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccc------------------CCceecccCeeEeeecccccccccccccccc
Confidence 4568999999999999999999632111111 122333222222211
Q ss_pred --cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHH
Q 004038 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~ 230 (777)
+...++|||||||.+|...+..+++.+|++++|+|+++|+..++.+.+..++..++|+++++||+|+.... .
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~-~----- 138 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW-R----- 138 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh-h-----
Confidence 11248999999999999999999999999999999999999999999999999999999999999986411 0
Q ss_pred HHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004038 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (777)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 310 (777)
...+. .|-. +....+......+.+....++..+.+.
T Consensus 139 --~~~~~---------------------------~f~e-------~sak~~~~v~~~~~~~~~~lv~~l~~~-------- 174 (590)
T TIGR00491 139 --SHEGR---------------------------PFME-------SFSKQEIQVQQNLDTKVYNLVIKLHEE-------- 174 (590)
T ss_pred --hccCc---------------------------hHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHhc--------
Confidence 00000 0000 000000001111111111111111111
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhC----CCCCCCCCCCCCCCCCcccccccccCC
Q 004038 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL----PSPLDLPAMKGTDPENPEATLERAASD 386 (777)
Q Consensus 311 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~l----PsP~~~~~~~~~~~~~~~~~~~~~~~~ 386 (777)
.+..+.+.. +. -.+..+|++++||++|.|+++|+++|.... +... ..++
T Consensus 175 ----G~~~e~~~~-i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l-------------------~~~~ 227 (590)
T TIGR00491 175 ----GFEAERFDR-VT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQL-------------------KLEE 227 (590)
T ss_pred ----CccHHhhhh-hh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhh-------------------ccCC
Confidence 111111111 11 123457899999999999999999986532 2111 2235
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCc--eeecceeEEecc--------Cceeecceeec--CC
Q 004038 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVALA--GD 454 (777)
Q Consensus 387 ~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g--------~~~~~v~~a~a--Gd 454 (777)
++|+.+.|..++.+++.|.++.++|++|+|++||.|...+.+. ..+|+.|+...+ .....++++.| |-
T Consensus 228 ~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~ 307 (590)
T TIGR00491 228 EGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGV 307 (590)
T ss_pred CCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCce
Confidence 7899999999999999999999999999999999999877653 457887775542 12345666554 44
Q ss_pred EEEEcCCCcccccceec
Q 004038 455 IIALAGLKDTITGETLC 471 (777)
Q Consensus 455 Iv~i~gl~~~~~GdtL~ 471 (777)
-+.+.||+++..|+.+.
T Consensus 308 ~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 308 KIAAPGLDDVMAGSPIR 324 (590)
T ss_pred eEEecCCCCCCCCCEEE
Confidence 45567888777777663
No 66
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=231.67 Aligned_cols=289 Identities=26% Similarity=0.302 Sum_probs=208.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--e-------------eeeecCCccccchhhhhhcceeEeeeEEEEEe
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--I-------------GEVHEGTATMDWMEQEQERGITITSAATTTYW 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~-------------g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~ 152 (777)
+...+++.+|++|.|||||+.+|||.+..+.. . |+.-+-+...|-...|++.||||+.++..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45679999999999999999999998876532 1 11111134677788999999999999999999
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHhHHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~~~~~i 231 (777)
..+++.+.|||||..|...+..+...||++|++|||..|+..||+++--.+...|++.+ +.+||||+.+.+. +..++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 5699999987652 122222
Q ss_pred H-------HHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCH
Q 004038 232 V-------TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (777)
Q Consensus 232 ~-------~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd 304 (777)
. +.|+....
T Consensus 163 ~~dy~~fa~~L~~~~~---------------------------------------------------------------- 178 (431)
T COG2895 163 VADYLAFAAQLGLKDV---------------------------------------------------------------- 178 (431)
T ss_pred HHHHHHHHHHcCCCcc----------------------------------------------------------------
Confidence 2 12222111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCC
Q 004038 305 EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTD 372 (777)
Q Consensus 305 ~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~~~~ 372 (777)
-.++.||+.|.++- .||+.+-..-..
T Consensus 179 -------------------------------~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~----------- 216 (431)
T COG2895 179 -------------------------------RFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIA----------- 216 (431)
T ss_pred -------------------------------eEEechhccCCcccccccCCCcccCccHHHHHhhcccc-----------
Confidence 23345666665543 233333211100
Q ss_pred CCCcccccccccCCCCCeEEEEEEEee--cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeeccee
Q 004038 373 PENPEATLERAASDDEPFAGLAFKIMS--DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 450 (777)
Q Consensus 373 ~~~~~~~~~~~~~~~~p~~~~V~K~~~--~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a 450 (777)
......|++.-|--+.. ..++| --|+|-||++++||.|...+.|+..+|++|..+.|. +++|
T Consensus 217 ----------~~~~~~~~RfPVQ~V~Rp~~dfRG--yaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~----~~~A 280 (431)
T COG2895 217 ----------DDRSAKAFRFPVQYVNRPNLDFRG--YAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGE----LAQA 280 (431)
T ss_pred ----------ccccccceeeceEEecCCCCcccc--cceeeeccceecCCeEEEccCCCeeeEEEEeccCCc----hhhc
Confidence 01124556655544432 22333 346788999999999999999999999999988754 6789
Q ss_pred ecCCEEEEcCCC--cccccceeccCCCccccccCCCCCceeEEEEEeCCCcC
Q 004038 451 LAGDIIALAGLK--DTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKAD 500 (777)
Q Consensus 451 ~aGdIv~i~gl~--~~~~GdtL~~~~~~~~l~~~~~~~Pvv~~aiep~~~~d 500 (777)
.||+-+.+.=-+ ++..||.|+..+.++. ..-.+..-++.+.=+|..++.
T Consensus 281 ~aG~aVtl~L~deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 281 SAGEAVTLVLADEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred cCCceEEEEEcceeecccCcEEEccCCCcc-hhhhcceeEEEecCCCCCCCc
Confidence 999999986322 2788999998876653 122334456666666666654
No 67
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.93 E-value=1.7e-25 Score=207.75 Aligned_cols=119 Identities=50% Similarity=0.864 Sum_probs=113.0
Q ss_pred CeeeEEeeeeccce-eeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccC
Q 004038 559 PQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAG 637 (777)
Q Consensus 559 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g 637 (777)
|+|+|||||++.++ ....++++.|+.++|+.+.++++|.+ +.++.|++++.++.+|++|+++|++||++++.+|||+|
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~-~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g 79 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE-GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCG 79 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS-TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTS
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc-cCCceeeeccccccccHHHHHHHhhhhhheecccccCC
Confidence 89999999999999 89999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 004038 638 FPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 678 (777)
Q Consensus 638 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 678 (777)
|||+||+|+|.++.+|+++|++.+|+.|+++||++||++|+
T Consensus 80 ~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 80 YPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 68
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.92 E-value=9.9e-25 Score=200.33 Aligned_cols=115 Identities=28% Similarity=0.500 Sum_probs=106.8
Q ss_pred eeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCce
Q 004038 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPV 640 (777)
Q Consensus 561 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv 640 (777)
|+|||||+++++. ..+ ++.++++|||+|+++++|+++|.|+.|.+++.++.+|++|+++|++||++++.+||| ||||
T Consensus 1 VaYRETI~~~~~~-~~~-~~~~~~~~~a~v~l~veP~~~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv 77 (115)
T cd01684 1 VIYKERPLGTGEG-VEH-IEVPPNPFWATVGLRVEPLPRGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEV 77 (115)
T ss_pred CceEEEeCCcEEE-EEE-EccCCCcEEEEEEEEEEECCCCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCE
Confidence 7899999999773 444 445578889999999999999999999999999999999999999999999999999 9999
Q ss_pred eeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 004038 641 VDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 678 (777)
Q Consensus 641 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 678 (777)
+||+|+|.++.+|++||++++|+.|+++||++|+.+|+
T Consensus 78 ~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 78 TDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred eeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=1.7e-24 Score=222.77 Aligned_cols=130 Identities=32% Similarity=0.403 Sum_probs=115.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceee--eee-----cCC------ccccchhhhhhcceeEeeeEEEEEecCeEEE
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVH-----EGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g--~v~-----~g~------~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 158 (777)
||+++||+|+|||||+++|++.+|.+.+.+ .++ .|. +++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999887644 222 333 4899999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC-------CCchHHHHHHHHHHHcC-CCEEEEEEccCCCC
Q 004038 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (777)
Q Consensus 159 liDTPG~~df~~~~~~~l~~aD~~ilVvda~~-------g~~~~~~~~~~~~~~~~-~p~iiviNKiD~~~ 221 (777)
+||||||.+|..++..+++.+|++|+|||+.+ +...++.+++..+...+ .|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 56778999888888887 46778999999974
No 70
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=1.9e-23 Score=207.49 Aligned_cols=130 Identities=40% Similarity=0.570 Sum_probs=111.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-----cCeEEEEEeCCCC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 165 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDTPG~ 165 (777)
|||+++|++|+|||||+++|+...|.+...+. ...+.|+.+.++.+|+|.......+.| .+..++||||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM---KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC---ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 79999999999999999999987776543211 135678888899999999888777655 4678999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999988888888877777899999999999986543
No 71
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.7e-24 Score=216.79 Aligned_cols=248 Identities=22% Similarity=0.279 Sum_probs=198.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---------cCeEEEEE
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINII 160 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---------~~~~i~li 160 (777)
..|++++||+|+|||||..+|... ++ +...|..+...+||+|.+.....+.. +..+++|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-------~S----TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlv 75 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-------GS----TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLV 75 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-------cc----chhhccCCcccccceeEeecceeeecccccccCccccceeEEE
Confidence 379999999999999999999521 11 35578899999999999998877764 23578999
Q ss_pred eCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcch-HhHHHHHHHHhCCCc
Q 004038 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-FRTRDMIVTNLGAKP 239 (777)
Q Consensus 161 DTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~-~~~~~~i~~~l~~~~ 239 (777)
|||||..++..++.+....|..++|||+..|.+.|+.+++-.....-.+.++|+||+|..-.+. ...+++..+
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------ 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------ 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH------
Confidence 9999999999999999999999999999999999999999888888889999999999764321 111111111
Q ss_pred eeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Q 004038 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (777)
Q Consensus 240 ~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (777)
T Consensus 150 -------------------------------------------------------------------------------- 149 (522)
T KOG0461|consen 150 -------------------------------------------------------------------------------- 149 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhcCcceeEeeccccCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEE
Q 004038 320 TIKKLIRKGTIAGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (777)
Q Consensus 320 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~----~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (777)
.+++.|.... -+...|++..||+.| .++++|.+++.+.+--|.. |+.+|+.++|.
T Consensus 150 k~~KtLe~t~-f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vD 208 (522)
T KOG0461|consen 150 KVRKTLESTG-FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVD 208 (522)
T ss_pred HHHHHHHhcC-cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEee
Confidence 1111111111 122358999999999 8999999999887766644 45899999999
Q ss_pred EEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc
Q 004038 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (777)
Q Consensus 396 K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (777)
..+..++.|++..|.|.+|.++.|+.|..+.-+...||+.+..++ .+|.+|.+||..++.
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGFC 268 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHh----hhhhhhhcccceeee
Confidence 999999999999999999999999999988777777888887664 568999999998873
No 72
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=3.4e-24 Score=218.73 Aligned_cols=131 Identities=27% Similarity=0.332 Sum_probs=117.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcc--eeeeee-----------cCCccccchhhhhhcceeEeeeEEEEEecCeEEE
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNY--KIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~--~~g~v~-----------~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 158 (777)
||+|+||+|||||||+++|++.+|.+. .++.++ .+++.+|+.+.|++||+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999999999876 333332 4568899999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCc
Q 004038 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (777)
Q Consensus 159 liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~ 222 (777)
|||||||.+|..++..+++.+|++|+|+|+.+++..++..++..+...++| +|+|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999999988888888876 5668999998753
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=4.4e-23 Score=208.21 Aligned_cols=143 Identities=41% Similarity=0.576 Sum_probs=121.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
++|||+++|++|+|||||+++|++..+.......+ +.+.+|+.+.|..+|+|+......+.+++..+++|||||+.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 36899999999999999999999766655433222 1366888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHH
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVT 233 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~ 233 (777)
...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+....++++.+
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999888888888888888999999999999976555444444443
No 74
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.90 E-value=2.3e-23 Score=192.13 Aligned_cols=116 Identities=58% Similarity=1.008 Sum_probs=112.8
Q ss_pred EEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceee
Q 004038 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 642 (777)
Q Consensus 563 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 642 (777)
|||||+++++..+.+++++||+++|++|+++++|+++|.|+.|.+++.++.+|++|+++|++||++++.+|||+||||+|
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~ 80 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVD 80 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcccc
Confidence 89999999997899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 004038 643 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 678 (777)
Q Consensus 643 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 678 (777)
|+|+|.++.+|+.+|++++|+.|+++|+++|+.+|+
T Consensus 81 v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 81 VKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred EEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 75
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.89 E-value=2.1e-22 Score=206.35 Aligned_cols=130 Identities=38% Similarity=0.507 Sum_probs=115.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecC-CccccchhhhhhcceeEeeeEEEEEec-----CeEEEEEeCCC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 164 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDTPG 164 (777)
|||+++||+|+|||||+++|++.++.....++...+ ++++|..+.|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 799999999999999999999988876654443332 467899999999999999988888764 37899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
|.+|...+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999998888888888888889999999999986
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.5e-22 Score=205.69 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=101.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------------- 153 (777)
+||+++||.|+|||||+++|. + ...|+.+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 589999999999999999994 1 33678888999999999988887774
Q ss_pred ----------C------eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-CchHHHHHHHHHHHcCC-CEEEEEE
Q 004038 154 ----------K------HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGV-PRICFVN 215 (777)
Q Consensus 154 ----------~------~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-~~~~~~~~~~~~~~~~~-p~iiviN 215 (777)
+ +.++|||||||.+|...+..++..+|++++|+|+.++ ...++.+++..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 67788888888877776 5788999
Q ss_pred ccCCCC
Q 004038 216 KMDRLG 221 (777)
Q Consensus 216 KiD~~~ 221 (777)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999865
No 77
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.89 E-value=8.6e-23 Score=188.52 Aligned_cols=116 Identities=35% Similarity=0.617 Sum_probs=112.5
Q ss_pred EEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceee
Q 004038 563 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 642 (777)
Q Consensus 563 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 642 (777)
|||||.++++..+++.+++||.++|++|.++++|++++.++.|.+++.++.+|++|+++|++||++++++|||+|+||+|
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~ 80 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTD 80 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 004038 643 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 678 (777)
Q Consensus 643 v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 678 (777)
++|+|.++.+|..++++++|++|+++||++|+++|+
T Consensus 81 v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 81 VRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred EEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 78
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=4.7e-22 Score=200.36 Aligned_cols=120 Identities=26% Similarity=0.435 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------CeE
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------KHR 156 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--------------~~~ 156 (777)
.||+++||+|+|||||+++|+... +...+|....|+++|+|+......+.+. ++.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQ 69 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCce
Confidence 389999999999999999997321 2345688888999999999998888776 779
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 157 i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+++||||||.+|...+..++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+..
T Consensus 70 ~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 70 ITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99999999999999999999999999999999999988888877777778999999999999874
No 79
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.88 E-value=4e-21 Score=230.98 Aligned_cols=317 Identities=20% Similarity=0.230 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC------------------eEEEEEeCCC
Q 004038 103 KTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTPG 164 (777)
Q Consensus 103 KSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~------------------~~i~liDTPG 164 (777)
||||+++|. +... ......|||.+.....+.++. ..++||||||
T Consensus 474 KTtLLD~iR---~t~v---------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIR---KTRV---------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHh---CCCc---------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 999999994 2111 233467899999888877642 1289999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC-cchHhHHHHHHHHhCCCceeEE
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
|.+|.....+++..+|++++|+|+++|+..|+.+++..+...++|+++|+||+|+.. ++....
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~---------------- 599 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISED---------------- 599 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccc----------------
Confidence 999998888889999999999999999999999999999999999999999999853 221000
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
.++-..+....+...+++-+.+.+.-.+ |.+.-+..+.+ .
T Consensus 600 ----------------------------------~~~~~~~~~q~~~~~~el~~~l~~v~~~-----L~~~G~~~e~~-~ 639 (1049)
T PRK14845 600 ----------------------------------EPFLLNFNEQDQHALTELEIKLYELIGK-----LYELGFDADRF-D 639 (1049)
T ss_pred ----------------------------------hhhhhhhhhhHHHHHHHHHHHHHHHhhH-----HHhcCcchhhh-h
Confidence 0000000000011111111111000000 00000111110 0
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~ 403 (777)
.+.. .+..+|++++||++|.|++.|+++|....+.-.+ . ....++++|+.+.|..++.+++.
T Consensus 640 ~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~-~--------------~L~~~~~~~~~g~VlEv~~~kG~ 701 (1049)
T PRK14845 640 RVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE-E--------------RLKLNVEGYAKGTILEVKEEKGL 701 (1049)
T ss_pred hhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh-h--------------hhccCCCCceEEEEEEEEEecCc
Confidence 1111 2456799999999999999999988764332111 0 01224578999999999999999
Q ss_pred ceEEEEEEEeeeecCCCeEEeCCCCc--eeecceeEEe--------ccCceeecceeecCCEEEE--cCCCcccccceec
Q 004038 404 GSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEM--------HANSREDVKVALAGDIIAL--AGLKDTITGETLC 471 (777)
Q Consensus 404 G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~--------~g~~~~~v~~a~aGdIv~i--~gl~~~~~GdtL~ 471 (777)
|+++.+.|++|+|++||.|...+.+. ..+|+.++.. .++....++++.|+.-|-| .||+++..|+.+.
T Consensus 702 G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~ 781 (1049)
T PRK14845 702 GTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIR 781 (1049)
T ss_pred eeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEE
Confidence 99999999999999999999887554 4677777642 1223467888888887777 4899888898875
Q ss_pred cCCCcc-----------ccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHH
Q 004038 472 DADHPI-----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (777)
Q Consensus 472 ~~~~~~-----------~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l 511 (777)
-..+.. .+....+....+.+-|.+...+-++.|.++|+++
T Consensus 782 v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 782 IVPTKEKIEKAKEEVMKEVEEAKIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred EeCCHHHHHHHHHHHHHHHhhhccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 322110 0011112234456666666667777777777654
No 80
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8.2e-23 Score=214.20 Aligned_cols=293 Identities=20% Similarity=0.231 Sum_probs=215.3
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCccee-------------eeeecCCccccchhhhhhcceeEeeeEEEE
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------------GEVHEGTATMDWMEQEQERGITITSAATTT 150 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~-------------g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~ 150 (777)
..+++...|+.++||+++||||+-..+++.+|..+.. ..-+.-++.+|++.+|+++|-|+....+.|
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 3456788999999999999999999999888876431 122334689999999999999999999999
Q ss_pred EecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-------chHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
+....+++++|+|||..|..+++.++.+||.+++|+.|..|- ..||+++..+++..++.. |+++||||.+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 999999999999999999999999999999999999997543 369999999999999987 567899998765
Q ss_pred chH-hHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 223 NFF-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 223 ~~~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
++. +..+++.+
T Consensus 233 nWs~eRy~E~~~-------------------------------------------------------------------- 244 (501)
T KOG0459|consen 233 NWSNERYEECKE-------------------------------------------------------------------- 244 (501)
T ss_pred CcchhhHHHHHH--------------------------------------------------------------------
Confidence 421 11111111
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcC-cceeEeeccccCCCChHHHHHHHH--HhCCCCCCCCCCCCCCCCCccc
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVV--DYLPSPLDLPAMKGTDPENPEA 378 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~-~~~Pv~~~Sa~~~~Gi~~Lld~i~--~~lPsP~~~~~~~~~~~~~~~~ 378 (777)
++...|+..-... .-.-.+.+|.++|.++.+..+.++ ...|++.+- .+ +
T Consensus 245 ------------------k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~-------ld-~-- 296 (501)
T KOG0459|consen 245 ------------------KLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEY-------LD-E-- 296 (501)
T ss_pred ------------------HHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCcccee-------hh-c--
Confidence 1111222100000 001134568888888876665222 122333220 00 0
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE
Q 004038 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (777)
Q Consensus 379 ~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (777)
....+-+.++|+++-|..-+.| .|++.+|+|-||++++||.+...++++...|.+||- +-++++++.+||.+-|
T Consensus 297 l~~~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk~ 370 (501)
T KOG0459|consen 297 LPHLERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKL 370 (501)
T ss_pred cCcccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceEE
Confidence 0112235689999988765544 479999999999999999999999999889988873 3588999999999876
Q ss_pred --cCCC--cccccceeccCCCccc
Q 004038 459 --AGLK--DTITGETLCDADHPIL 478 (777)
Q Consensus 459 --~gl~--~~~~GdtL~~~~~~~~ 478 (777)
.|++ ++.+|-+||++.++..
T Consensus 371 rlkgieeedi~~GfiL~~~~n~~~ 394 (501)
T KOG0459|consen 371 RLKGIEEEDISPGFILCSPNNPCK 394 (501)
T ss_pred EecccchhhccCceEEecCCCccc
Confidence 5665 4889999999987764
No 81
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=3.2e-22 Score=185.71 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=105.9
Q ss_pred eeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCC----CcEEEecccCCcCccccHHHHHHHHHHHHHcCccc
Q 004038 561 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGS----GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLA 636 (777)
Q Consensus 561 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~----g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~ 636 (777)
|+|||||.++++..++|++++||.+||++|.++++|++++. ++.|.+.. ++.+|++|+++|++|+++++.+|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 78999999998888999999999999999999999998776 46676555 78899999999999999999999999
Q ss_pred CCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q 004038 637 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 678 (777)
Q Consensus 637 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 678 (777)
||||+||+|+|.++.+|+.+|++..+ .|++.||++|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999988776666 889999999999874
No 82
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.87 E-value=2.8e-21 Score=198.77 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=113.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEE----------------------
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT---------------------- 149 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~---------------------- 149 (777)
+|+++|+.++|||||+++|.. +.... +. ......+|.+..|.++|+|+..+...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 478999999999999999973 32221 10 00124678888999999987544422
Q ss_pred --EEecCeEEEEEeCCCCcchHHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc-ch
Q 004038 150 --TYWNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 224 (777)
Q Consensus 150 --~~~~~~~i~liDTPG~~df~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~-~~ 224 (777)
+...++.++|+|||||.+|..++..++. .+|++++|+|+.+|...++++++.++...++|+++|+||+|+... .+
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 2334678999999999999999999986 799999999999999999999999999999999999999998764 46
Q ss_pred HhHHHHHHHHhCC
Q 004038 225 FRTRDMIVTNLGA 237 (777)
Q Consensus 225 ~~~~~~i~~~l~~ 237 (777)
.+.++++++.|+.
T Consensus 157 ~~~~~~l~~~L~~ 169 (224)
T cd04165 157 QETLKDLKRILKV 169 (224)
T ss_pred HHHHHHHHHHhcC
Confidence 7778888877653
No 83
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=3.1e-22 Score=171.39 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=75.2
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~-~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||+|||+||++++|+|+++|++|||+|++++..+++. +.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999988766454 8999999999999999999999999999999999999986
No 84
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=2.3e-20 Score=186.35 Aligned_cols=143 Identities=45% Similarity=0.691 Sum_probs=117.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
||+++|.+|+|||||+|+|+...........+. ...+++...+..+|+|+......+.+.+..++||||||+.+|...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee--cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999986655433222111 145677778888999999888888888999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC-cchHhHHHHHHHHhC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 236 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~-~~~~~~~~~i~~~l~ 236 (777)
+..+++.+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.. .+.....+.+++.++
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 99999999999999999999988888998888888999999999999986 444555555555443
No 85
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=1.4e-21 Score=171.12 Aligned_cols=89 Identities=45% Similarity=0.748 Sum_probs=83.3
Q ss_pred eeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCcccc
Q 004038 680 KMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDV 759 (777)
Q Consensus 680 ~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~ 759 (777)
+||||||+++|.+|++++|+|+++|++|||+|++++..+++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999988558899999999999999999999999999999999999999
Q ss_pred CCchHHHHH
Q 004038 760 VPQHIQNQL 768 (777)
Q Consensus 760 v~~~~~~~~ 768 (777)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998874
No 86
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.85 E-value=4e-21 Score=189.25 Aligned_cols=127 Identities=21% Similarity=0.329 Sum_probs=103.7
Q ss_pred CCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCC-------------------------------------
Q 004038 558 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------------------- 600 (777)
Q Consensus 558 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g------------------------------------- 600 (777)
+|.|+|||||.+.+.....-+ . .++..++++.++|++.+
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~k-s---~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAE-T---PNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeE-C---CCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 599999999998775332211 1 12335788888888421
Q ss_pred --------CCcEEEecccCCc----CccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccC--CCCCHHHHHHHH
Q 004038 601 --------SGYEFKSEIKGGA----VPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAA 666 (777)
Q Consensus 601 --------~g~~f~~~~~~~~----i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 666 (777)
..++|+|.+.+.. +..+++++|++||++|+++|||||+||+||+|+|.++.+|+ .++++++|.+|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 1267777766433 44678999999999999999999999999999999999998 788899999999
Q ss_pred HHHHHHHHHHcCCeeeeeeeEE
Q 004038 667 RGAFREGMRKAGPKMLEPIMKV 688 (777)
Q Consensus 667 ~~a~~~a~~~a~~~llEPi~~~ 688 (777)
|+||++|+++|+|+||||||.|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999985
No 87
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=1.7e-21 Score=169.23 Aligned_cols=83 Identities=54% Similarity=0.947 Sum_probs=79.1
Q ss_pred eeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccC
Q 004038 681 MLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 681 llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
||||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||+++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 68999999999999999999999999999999999765 67899999999999999999999999999999999999999
Q ss_pred CchH
Q 004038 761 PQHI 764 (777)
Q Consensus 761 ~~~~ 764 (777)
|+++
T Consensus 80 ~~~~ 83 (85)
T smart00838 80 PKSI 83 (85)
T ss_pred Chhh
Confidence 9754
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=3.3e-20 Score=200.98 Aligned_cols=114 Identities=25% Similarity=0.333 Sum_probs=99.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch--
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df-- 168 (777)
+.|+|+|++|+|||||+|+|+ |...++ ++..+|+|.+.......|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~r~AI--------------V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GRRIAI--------------VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCeeeE--------------eecCCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 689999999999999999995 433333 2234899999999999999999999999998742
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 -------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
..+++.++..||++|+|||+..|+++++..+.+.++..++|+++|+||+|...
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 34578899999999999999999999999999999988899999999999763
No 89
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.84 E-value=5.9e-21 Score=161.06 Aligned_cols=75 Identities=53% Similarity=0.923 Sum_probs=70.7
Q ss_pred CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeC
Q 004038 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 558 (777)
Q Consensus 484 ~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~ 558 (777)
+|+|+++++|+|.+++|.++|.+||++|++|||+|++++|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999874
No 90
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.6e-19 Score=175.85 Aligned_cols=116 Identities=27% Similarity=0.393 Sum_probs=97.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCCcchHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~df~~ 170 (777)
+|+++|++|+|||||+++|. +. ..+..+.+..+++|+......+.+. +..+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~---~~------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT---GI------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh---Cc------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 79999999999999999995 21 0123344556788888887777776 78999999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC-CEEEEEEccCCCCc
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~-p~iiviNKiD~~~~ 222 (777)
.+..+++.+|++++|+|+.+++..++.+.+..+...+. |+++|+||+|+...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 88899999999999999999888888887777777776 89999999998653
No 91
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.82 E-value=2.1e-20 Score=159.54 Aligned_cols=78 Identities=44% Similarity=0.739 Sum_probs=75.3
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||+++|.||++|+|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999766 679999999999999999999999999999999999999986
No 92
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.81 E-value=4.1e-20 Score=157.76 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=75.2
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999776 689999999999999999999999999999999999999974
No 93
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.80 E-value=5.9e-20 Score=156.95 Aligned_cols=78 Identities=58% Similarity=0.941 Sum_probs=75.3
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||+|+|+||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG-GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC-CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999765 678999999999999999999999999999999999999986
No 94
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.80 E-value=2.4e-19 Score=177.83 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=101.4
Q ss_pred CCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccC--------------------------------------
Q 004038 558 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA-------------------------------------- 599 (777)
Q Consensus 558 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~-------------------------------------- 599 (777)
+|.|+|||||.+.+...... + +. ....++.++++|++.
T Consensus 1 ~PiV~frETi~~~~~~~~~~-~-s~--n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLA-K-SP--NKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCccEEE-E-cC--CcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 59999999999877422211 1 11 122467777777642
Q ss_pred -------CCCcEEEecccCCcC----ccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCC--CCCHHHHHHHH
Q 004038 600 -------GSGYEFKSEIKGGAV----PKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV--DSSVLAFQLAA 666 (777)
Q Consensus 600 -------g~g~~f~~~~~~~~i----~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 666 (777)
...++|.|...+... +++|+++|++||++|+.+||||||||+||+|+|.++.+|.. ++.+++|..|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 123667776666554 78999999999999999999999999999999999999986 78889999999
Q ss_pred HHHHHHHHHHcCCeeeeeeeE
Q 004038 667 RGAFREGMRKAGPKMLEPIMK 687 (777)
Q Consensus 667 ~~a~~~a~~~a~~~llEPi~~ 687 (777)
++||++|+++|+|+||||||.
T Consensus 157 r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHhhCCCEEEccccC
Confidence 999999999999999999994
No 95
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.80 E-value=1.2e-19 Score=155.30 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=74.7
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
||||+++|.||++|+|+|+++|++|||+|.+++..+++...|+|.+|+++++||.++||++|+|+|+|+++|+||+++
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999866467899999999999999999999999999999999999985
No 96
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.80 E-value=8e-20 Score=156.88 Aligned_cols=79 Identities=37% Similarity=0.587 Sum_probs=74.9
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCC-CeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||+++|.||++++|+|+++|++|||.|.+++..++ +...|+|.+|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999999999999999987643 348999999999999999999999999999999999999986
No 97
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=6.2e-19 Score=209.55 Aligned_cols=240 Identities=19% Similarity=0.179 Sum_probs=174.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+|+|. |.....++ ..|+|++.....+.++++.+++|||||+.+|.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~~vgn---------------~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQRVGN---------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCCccCC---------------CCCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 3589999999999999999994 54333322 26788888888888999999999999998874
Q ss_pred H--------HH--HHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC-cchHhHHHHHHHHhC
Q 004038 170 L--------EV--ERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 236 (777)
Q Consensus 170 ~--------~~--~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~-~~~~~~~~~i~~~l~ 236 (777)
. |. ..++ ..+|++++|+|+++.. +....+.++.+.++|+++|+||+|+.+ .......+++++.+|
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 2 11 1222 3689999999999853 344567788889999999999999864 345556788899999
Q ss_pred CCceeEEeccCCC-CCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhc-CHHHHHHHhcCC
Q 004038 237 AKPLVVQLPVGAE-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGN 314 (777)
Q Consensus 237 ~~~~~~~~pi~~~-~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~-dd~l~e~~l~~~ 314 (777)
...+++..+.+++ +.+.+.++.... . + .....++|++..+..++.++.+.+.+.+. ++.++.+|++++
T Consensus 143 ~pVvpiSA~~g~GIdeL~~~I~~~~~------~---~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 143 CPVIPLVSTRGRGIEALKLAIDRHQA------N---E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhhh------c---c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 9888887776655 333333322110 0 0 01124567777777778888888777665 788999999997
Q ss_pred CCCHH------HHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhC
Q 004038 315 EPDEE------TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (777)
Q Consensus 315 ~~~~~------~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~l 359 (777)
..+.+ +..+.+++........|.+++++.+..+++.+++.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55544 4445555555444456888999999999999999998654
No 98
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=7.6e-19 Score=168.73 Aligned_cols=110 Identities=23% Similarity=0.338 Sum_probs=86.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH--
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-- 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~-- 169 (777)
+|+++|.+|+|||||+|+| +|.....+++ +|+|+......+.+.+..+.|+||||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~L---tg~~~~v~n~---------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNAL---TGAKQKVGNW---------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK 63 (156)
T ss_dssp EEEEEESTTSSHHHHHHHH---HTTSEEEEES---------------TTSSSEEEEEEEEETTEEEEEEE----SSSSSS
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCceecCC---------------CCCCeeeeeEEEEecCceEEEEECCCcccCCCC
Confidence 7999999999999999999 5766555542 6788888888999999999999999975542
Q ss_pred --HH--HHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 --LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 --~~--~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.| +..++ ...|++|+|+||+. ..+...+..++.+.|+|+++|+||+|...
T Consensus 64 s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 64 SEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp SHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred CcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 11 23333 47899999999987 46677788899999999999999999754
No 99
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=178.41 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=94.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc--
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d-- 167 (777)
---|||+|+||+|||||+|+|+ |..-.+. .+...+|...-.+-+..++.++.|+||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~---G~KisIv--------------S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV---GQKISIV--------------SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh---cCceEee--------------cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 3469999999999999999996 4433332 22344565555566667789999999999753
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 ------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
....+..++..+|++++|+|+.+++...++.+++.++..+.|+++++||+|+...+
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK 130 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH
Confidence 35567888999999999999999999999999999999788999999999987643
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=3.1e-18 Score=167.83 Aligned_cols=115 Identities=32% Similarity=0.361 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec---CeEEEEEeCCCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVD 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDTPG~~d 167 (777)
+.|+++|++|+|||||+++|... ... ....+++|.......+.+. +..+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~--~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT--NVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc--ccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 46999999999999999999621 110 0122455665555555554 67899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
|...+..++..+|++++|+|++++...++.+.+..+...++|+++|+||+|+...+
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 98888889999999999999999988888888888888999999999999987543
No 101
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=4.5e-19 Score=151.88 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=74.0
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
|||++++|.||++|+|+|+++|++|||+|.+++..+++...|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999766457899999999999 599999999999999999999999975
No 102
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.78 E-value=4.1e-19 Score=152.17 Aligned_cols=79 Identities=51% Similarity=0.868 Sum_probs=75.6
Q ss_pred eeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004038 683 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 761 (777)
Q Consensus 683 EPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 761 (777)
||||.++|+||++++|+|+++|++|||+|.+++..+.+.+.|+|.+|+++++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999997663579999999999999999999999999999999999999985
No 103
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.3e-18 Score=189.28 Aligned_cols=239 Identities=25% Similarity=0.283 Sum_probs=160.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----------------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 152 (777)
+-+.+||+||+|.|||-|++.|-.. ...- ....|||.......|..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~t---NVqe---------------geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGT---NVQE---------------GEAGGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcc---cccc---------------ccccceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 4468999999999999999999521 1111 11234444444433322
Q ss_pred --cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHH
Q 004038 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~ 230 (777)
+--.+.+||||||..|.....++...||.+|+|||..+|+.+||.+.+++++..+.|+||.+||+||+-
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY--------- 606 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY--------- 606 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc---------
Confidence 112488999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeee-ccccHhHH----HHHHHHHHHHHHHHHhcCHH
Q 004038 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQ----KMAQEYRSQMIETIVELDDE 305 (777)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~-~~~~~~~~----~~~~~~~~~l~e~~~~~dd~ 305 (777)
||.... .+|-+.+. +...++...+-..+.++.+.
T Consensus 607 -----------------------------------------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQ 645 (1064)
T KOG1144|consen 607 -----------------------------------------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQ 645 (1064)
T ss_pred -----------------------------------------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 222110 01111111 11222333322222222111
Q ss_pred HH--HHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 004038 306 AM--ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 383 (777)
Q Consensus 306 l~--e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 383 (777)
=| +.|+++. -.+.++-++++||.+|.||..||-+|+++.-.-.. ..
T Consensus 646 gLN~~LyykNk---------------~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~-----------------~k 693 (1064)
T KOG1144|consen 646 GLNAELYYKNK---------------EMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV-----------------EK 693 (1064)
T ss_pred ccchhheeecc---------------cccceEEeeecccccCCCcHHHHHHHHHHHHHHHH-----------------HH
Confidence 01 1122221 13567889999999999999999999987422111 00
Q ss_pred cCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC
Q 004038 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK 427 (777)
Q Consensus 384 ~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~ 427 (777)
...-..+.+.|..+-..++.|+-.-+-+..|.|+.||.|.+..-
T Consensus 694 l~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 694 LAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred HhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 01134556777777777888988888888999999999987543
No 104
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=4.7e-18 Score=184.39 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d- 167 (777)
....|||+|+||+|||||+|+|+ |..+.+ .....|+|+++-...++|++..+.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il---geeR~I--------------v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL---GEERVI--------------VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc---cCceEE--------------ecCCCCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 57899999999999999999996 333222 234579999999999999999999999999742
Q ss_pred ---------h-HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 168 ---------F-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 ---------f-~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
| ...+..++..+|.+++|+||.+|+..|+..+..++.+.|.++++|+||+|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2 345788999999999999999999999999999999999999999999998754
No 105
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=7.2e-18 Score=175.01 Aligned_cols=283 Identities=20% Similarity=0.265 Sum_probs=203.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCC----ccccchhhhhhcceeEeeeEEEEEe--------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYW-------------- 152 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~----~~~d~~~~e~~~g~Ti~~~~~~~~~-------------- 152 (777)
.+++++|..|+|||||+..|. .|..++|. --+..++.|...|-|...+.-.+.+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 578999999999999998884 23444432 2344556777777766655444333
Q ss_pred -------cCeEEEEEeCCCCcchHHHHHHHHHh--cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 153 -------NKHRINIIDTPGHVDFTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 153 -------~~~~i~liDTPG~~df~~~~~~~l~~--aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
..+.++|||.+||..|...+..++.. -|.+++||.|..|+...|++++.++...++|++++++|||+....
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 24679999999999999988888865 499999999999999999999999999999999999999998653
Q ss_pred -hHhHHHHHHHHhC---CCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHH
Q 004038 224 -FFRTRDMIVTNLG---AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (777)
Q Consensus 224 -~~~~~~~i~~~l~---~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (777)
.+++++++.+.+. .+..|..+-
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt------------------------------------------------------ 345 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVT------------------------------------------------------ 345 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEee------------------------------------------------------
Confidence 6778888876653 322211110
Q ss_pred HhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 004038 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (777)
Q Consensus 300 ~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~ 379 (777)
++++...+-.. .+..+++|+|+.|..+|.|++ |+....+.+|+-..+..
T Consensus 346 -----------------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e------------ 394 (591)
T KOG1143|consen 346 -----------------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEE------------ 394 (591)
T ss_pred -----------------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHH------------
Confidence 11111111111 456789999999999999998 55555566654432110
Q ss_pred cccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--Cc--eeecceeEEeccCceeecceeecCCE
Q 004038 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GK--KERIGRLLEMHANSREDVKVALAGDI 455 (777)
Q Consensus 380 ~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~~--~~ki~~i~~~~g~~~~~v~~a~aGdI 455 (777)
+.--...|.-.+|..++..|.+|.++-|-+-+|.++.|+.+.+.+. |. +.+|..|.+ .+.++..+.||+-
T Consensus 395 --~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R----nr~acrvvraGqa 468 (591)
T KOG1143|consen 395 --RIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR----NRQACRVVRAGQA 468 (591)
T ss_pred --HHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec----cccceeeecCccc
Confidence 0011246677889999999999999999999999999999998653 33 345677753 4567888999998
Q ss_pred EEEcCCCc-----ccccceeccC
Q 004038 456 IALAGLKD-----TITGETLCDA 473 (777)
Q Consensus 456 v~i~gl~~-----~~~GdtL~~~ 473 (777)
..+. +.+ ++.|.+|.+.
T Consensus 469 Asls-l~d~D~~~LR~GMVl~~~ 490 (591)
T KOG1143|consen 469 ASLS-LNDPDGVSLRRGMVLAEI 490 (591)
T ss_pred eeee-ccCCCccchhcceEEeec
Confidence 8774 221 5667776654
No 106
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=2e-17 Score=180.72 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=89.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+|+|+ |..... .....++|.......+.+++.+++||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~---~~k~~i--------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRII---GEKLSI--------------VTPKVQTTRSIITGIITLKDTQVILYDTPGIFE 112 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHh---CCceee--------------ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCC
Confidence 455799999999999999999996 211110 112334555555556677889999999999854
Q ss_pred h--------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f--------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. ......+++.+|++|+|+|+.+++...+..++..++..+.|.++|+||+|+..
T Consensus 113 ~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred CcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 2 23344568899999999999998888777788888888899999999999854
No 107
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.75 E-value=9.3e-18 Score=174.13 Aligned_cols=281 Identities=20% Similarity=0.271 Sum_probs=203.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCC----ccccchhhhhhcceeEeeeEEE-----------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATT----------------- 149 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~----~~~d~~~~e~~~g~Ti~~~~~~----------------- 149 (777)
.+|+++|.+++|||||+..|. . |++++|. ..+..++.|.+.|-|.....--
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLT--H------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLT--H------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeee--e------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 579999999999999998884 1 2333331 2233344555555444333222
Q ss_pred --EEe------cCeEEEEEeCCCCcchHHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 150 --TYW------NKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 150 --~~~------~~~~i~liDTPG~~df~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
++| .-..++|||.+||+.|...+..++. .-|...++|-++.|+...|.+++.++....+|+++|++|+|.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 223 1246999999999999988888774 459999999999999999999999999999999999999999
Q ss_pred CCcc-hHhHHHHHHHHhCC---CceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHH
Q 004038 220 LGAN-FFRTRDMIVTNLGA---KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (777)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~---~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (777)
.-++ ++++++-+.+.+.. ..+|+.+- .-+ |++ ..+..|
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVr--s~D------DVv-~~A~NF----------------------------- 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVR--SMD------DVV-HAAVNF----------------------------- 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEe--ccc------ceE-EeeccC-----------------------------
Confidence 9887 56677777666643 33333221 000 000 001111
Q ss_pred HHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 004038 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375 (777)
Q Consensus 296 ~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~ 375 (777)
...+++|+|..|..+|.++. ||.+..+.++.-..
T Consensus 328 ----------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~----------- 361 (641)
T KOG0463|consen 328 ----------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ----------- 361 (641)
T ss_pred ----------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCcccc-----------
Confidence 12356899999999999987 88888888864432
Q ss_pred cccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCc----eeecceeEEeccCceeecceee
Q 004038 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVAL 451 (777)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~----~~ki~~i~~~~g~~~~~v~~a~ 451 (777)
...+.|...+|.+++..|++|+++.+..++|+++.+|.+...++.. ...|++|. +++.+|..+.
T Consensus 362 --------~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~Vr 429 (641)
T KOG0463|consen 362 --------LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVR 429 (641)
T ss_pred --------cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEe
Confidence 1236788899999999999999999999999999999999765432 34566654 5678999999
Q ss_pred cCCEEEE--cCCC--cccccceeccCCC
Q 004038 452 AGDIIAL--AGLK--DTITGETLCDADH 475 (777)
Q Consensus 452 aGdIv~i--~gl~--~~~~GdtL~~~~~ 475 (777)
+|+-..+ .+++ ++++|.++.+++.
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCCC
Confidence 9998755 4443 4889999988754
No 108
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=2.7e-17 Score=174.68 Aligned_cols=111 Identities=22% Similarity=0.222 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch---
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df--- 168 (777)
.|+++|++|+|||||+|+|+ |..... .....++|...........+.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~---~~~~~~--------------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH---GQKISI--------------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCcEee--------------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 58999999999999999996 321111 1112334444333333445678999999998642
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 -----~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
...+..+++.+|++++|+|++++.... ..++..+...+.|+++|+||+|+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 234567789999999999999876554 566777778899999999999986
No 109
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.75 E-value=7.1e-18 Score=146.31 Aligned_cols=85 Identities=31% Similarity=0.420 Sum_probs=80.5
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccc
Q 004038 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (777)
Q Consensus 387 ~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 466 (777)
++||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++++|+.++|.++.+++++.||||+++.|++++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3799999999999999999999999999999999999877 667899999999999999999999999999999999999
Q ss_pred cceecc
Q 004038 467 GETLCD 472 (777)
Q Consensus 467 GdtL~~ 472 (777)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999963
No 110
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=3.5e-17 Score=158.09 Aligned_cols=112 Identities=26% Similarity=0.333 Sum_probs=89.0
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH---
Q 004038 94 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--- 170 (777)
Q Consensus 94 ~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~--- 170 (777)
+++|++|+|||||+++|+ +.... ..+...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~---~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT---GRRDA--------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHh---CCcEE--------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 589999999999999996 21100 0112345666666667777889999999999988543
Q ss_pred -----HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 171 -----EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 171 -----~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
++...++.+|++++|+|+.++....+..++++++..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 5567789999999999999988888888888888889999999999998754
No 111
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=6.6e-17 Score=183.61 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|++|+|||||+|+|+.... ......+|+|++.....+.+++..+++|||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-----------------~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER-----------------VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-----------------eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 4568999999999999999999972211 11223467888888777888899999999999753
Q ss_pred h-----------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 F-----------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f-----------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. .....++++.+|++|+|+|+.+|...++..++.++.+.++|+++|+||+|+..
T Consensus 234 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 234 KGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 2 12345688999999999999999999999999999999999999999999863
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=4.8e-17 Score=159.42 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=83.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
||+++|++|+|||||+++|....+.. .+.. ......|+......+.+++..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLP-------PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCc-------ccccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 68999999999999999996332210 0000 011223445555567778899999999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHH----HcCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~iiviNKiD~~~~ 222 (777)
+...++.+|++++|+|+.+.-.. .....+..+. ..++|+++++||+|+...
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 99999999999999999874321 1222333222 247999999999998653
No 113
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5.5e-17 Score=183.97 Aligned_cols=116 Identities=22% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|++|+|||||+|+|+.... ......+|+|.+.....+.+++..+.+|||||+.+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-----------------~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER-----------------VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe-----------------eecCCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 4567999999999999999999972211 11123467788877777888888999999999865
Q ss_pred hH-----------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 168 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 168 f~-----------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
+. .....+++.+|++|+|+|+.++...++..++..+.+.++|+++|+||+|+.
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 32 223567899999999999999999999999999999999999999999987
No 114
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=1.4e-16 Score=156.11 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=88.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
.++|+++|++|+|||||+|+|+.... .. .+..++.|.......+...+..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER---VI--------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc---ee--------------ccCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 46899999999999999999962211 10 11124455555555566677889999999986541
Q ss_pred -----------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 170 -----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 -----------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 12345678999999999999998888888888888889999999999998754
No 115
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=156.49 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=104.3
Q ss_pred hccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEe
Q 004038 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (777)
Q Consensus 82 ~~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 161 (777)
...+|.+..+.||++|++|+|||||+|+|+ |... . ......+|.|...+...+.. .+.|+|
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~---~~k~-L------------ArtSktPGrTq~iNff~~~~---~~~lVD 76 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALT---NQKN-L------------ARTSKTPGRTQLINFFEVDD---ELRLVD 76 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHh---CCcc-e------------eecCCCCCccceeEEEEecC---cEEEEe
Confidence 356777889999999999999999999996 3211 0 11234578888888665542 389999
Q ss_pred CCCCc----------chHHHHHHHH---HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc-chHhH
Q 004038 162 TPGHV----------DFTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRT 227 (777)
Q Consensus 162 TPG~~----------df~~~~~~~l---~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~-~~~~~ 227 (777)
.|||. .+...+..++ ....++++++|+.++....+++.++.+...++|+++++||+|+... +..+.
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 99985 1223333444 4578999999999999999999999999999999999999999874 45556
Q ss_pred HHHHHHHhCC
Q 004038 228 RDMIVTNLGA 237 (777)
Q Consensus 228 ~~~i~~~l~~ 237 (777)
+..+++.++.
T Consensus 157 l~~v~~~l~~ 166 (200)
T COG0218 157 LNKVAEELKK 166 (200)
T ss_pred HHHHHHHhcC
Confidence 6666665554
No 116
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=7.9e-18 Score=170.70 Aligned_cols=245 Identities=20% Similarity=0.341 Sum_probs=179.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-------------
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 152 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~------------- 152 (777)
..+-..||+.+||+-|||||++.++ +|.. +-.++.|-+|.+||+..+++...
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAi---SGv~------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~c 98 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAI---SGVH------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGC 98 (466)
T ss_pred hheeeeeecceeccccCcceeeeee---ccce------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcch
Confidence 3455689999999999999999998 3421 22356778899999988776443
Q ss_pred -------------------c-----CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-CchHHHHHHHHHHHcC
Q 004038 153 -------------------N-----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYG 207 (777)
Q Consensus 153 -------------------~-----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-~~~~~~~~~~~~~~~~ 207 (777)
. -+.+.|+|+|||.-+...+..+....|++++++.+++. .++||.+++....-+.
T Consensus 99 y~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 99 YRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred hhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 0 03688999999999999999999999999999999976 5899999999888888
Q ss_pred CCEEEE-EEccCCCCcch-HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHH
Q 004038 208 VPRICF-VNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQ 285 (777)
Q Consensus 208 ~p~iiv-iNKiD~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 285 (777)
++.+++ -||+|+...+. .+-.++|
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I------------------------------------------------------ 204 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQALEQHEQI------------------------------------------------------ 204 (466)
T ss_pred hceEEEEechhhhhhHHHHHHHHHHH------------------------------------------------------
Confidence 887665 59999876431 1111111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCC
Q 004038 286 KMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDL 365 (777)
Q Consensus 286 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~ 365 (777)
.+|+.| ..+ .-.|++..||.-+.+++.+.++|++.+|-|..
T Consensus 205 ----------------------~kFi~~--------------t~a--e~aPiiPisAQlkyNId~v~eyivkkIPvPvR- 245 (466)
T KOG0466|consen 205 ----------------------QKFIQG--------------TVA--EGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR- 245 (466)
T ss_pred ----------------------HHHHhc--------------ccc--CCCceeeehhhhccChHHHHHHHHhcCCCCcc-
Confidence 122221 111 12488999999999999999999999999965
Q ss_pred CCCCCCCCCCcccccccccCCCCCeEEEEEEEee--------cCCCceEEEEEEEeeeecCCCeEEeCCC-------Cc-
Q 004038 366 PAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANK-------GK- 429 (777)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--------~~~~G~l~~~RV~sG~l~~g~~v~~~~~-------~~- 429 (777)
|...|..+.|.+.|. +.-.|-++-+-+..|.|+.||.+.+-+. |+
T Consensus 246 -------------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~ 306 (466)
T KOG0466|consen 246 -------------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNI 306 (466)
T ss_pred -------------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcE
Confidence 235666777877764 2335778999999999999999985331 11
Q ss_pred --eeecceeEEeccCceeecceeecCCEEEE
Q 004038 430 --KERIGRLLEMHANSREDVKVALAGDIIAL 458 (777)
Q Consensus 430 --~~ki~~i~~~~g~~~~~v~~a~aGdIv~i 458 (777)
+--..+|..+.+ +..+++.|.+|-.+++
T Consensus 307 ~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 307 KCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 111334444443 3467888999988887
No 117
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.7e-16 Score=181.48 Aligned_cols=117 Identities=26% Similarity=0.401 Sum_probs=96.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.++|+|+|++|+|||||+|+|+ +... ...+...|+|.+.....+.|.+..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~---~~~~--------------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRIL---GRRE--------------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh---CcCc--------------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 456899999999999999999996 2110 01223467788777777888899999999999863
Q ss_pred --------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 --------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 --------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+...+..+++.+|++|+|+|++++.......+++.++..++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 445567789999999999999999888888888899889999999999999854
No 118
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.71 E-value=4.7e-17 Score=140.75 Aligned_cols=82 Identities=51% Similarity=0.782 Sum_probs=79.0
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccce
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (777)
|+++|||+.+|++.|+++|+|||+|+|++||.|++...+++++|++|+.++|.+..+++++.||||+++.|++++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57899999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ec
Q 004038 470 LC 471 (777)
Q Consensus 470 L~ 471 (777)
||
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 97
No 119
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.1e-16 Score=180.65 Aligned_cols=117 Identities=16% Similarity=0.247 Sum_probs=92.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc-
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV- 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~- 166 (777)
...++|+++|++|+|||||+|+|+ +... ...+...|+|++.....+.+++..+.||||||..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~---~~~~--------------~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLA---GEER--------------SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh---CCCc--------------ccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 457899999999999999999996 2111 0122245677766666777888899999999963
Q ss_pred --------chHHH--HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 --------DFTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 --------df~~~--~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
++... ...+++.+|++|+|+|++++...++..++..+...++|+|+|+||+|+..
T Consensus 272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 22221 23467899999999999999999999999988889999999999999865
No 120
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=1.9e-16 Score=179.61 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=94.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc-----
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----- 166 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~----- 166 (777)
.|+++|++|+|||||+|+|+ +..... .+...|+|.+.....+.|.+..+++|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~---~~~~~~--------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT---GKRDAI--------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh---CCCcce--------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 48999999999999999996 211111 12236788888888889999999999999984
Q ss_pred ---chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 ---DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 ---df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+...+..+++.+|++++|+|+.++....+..+.+.+++.++|+++|+||+|...
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 3455677889999999999999999999999999999999999999999999764
No 121
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=6e-16 Score=151.58 Aligned_cols=115 Identities=22% Similarity=0.197 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
+.++|+++|+.|+|||||+++|. .+.... +....+..+.....+.+++ ..+++|||||+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~--~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFK--SGTFSE----------------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh--hCCCcc----------------cCCCccceEEEEEEEEECCEEEEEEEEECCChH
Confidence 45899999999999999999996 221110 0011112222333444444 578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+|.......++.+|++++|+|+.+....+... .+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99988899999999999999999865444332 3333333 4789999999999864
No 122
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=4.6e-16 Score=167.27 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=84.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch-
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df- 168 (777)
-..|+++|++|+|||||+|+|+ |....... ...++|...........+.+++||||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~---g~~~~~vs--------------~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALV---GQKISIVS--------------PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHh---CCceeecC--------------CCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4579999999999999999996 32111111 11222332222223335579999999998653
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 -------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
...+..++..+|++++|+|+.++.......+++.+...++|+++|+||+|+.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 3445667889999999999999888888888888887789999999999986
No 123
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=4.3e-16 Score=154.03 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
...++|+++|++|+|||||+++|... .. .. .+...|. ....+.+++..+++|||||+..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~--~~---~~------------~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~ 70 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE--DI---DT------------ISPTLGF----QIKTLEYEGYKLNIWDVGGQKT 70 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC--CC---CC------------cCCcccc----ceEEEEECCEEEEEEECCCCHH
Confidence 34578999999999999999999621 00 00 0111122 2233445678899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHH----HHcCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|+++..... ....+..+ ...++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 8888888999999999999999863221 11222222 2357999999999998653
No 124
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=4.8e-16 Score=151.30 Aligned_cols=112 Identities=20% Similarity=0.185 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|.... ...... ....|.+ ...+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~---~~~~~~------------~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN---AQSQII------------VPTVGFN----VESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccC---CCccee------------cCccccc----eEEEEECCEEEEEEECCCCHhhHHH
Confidence 58999999999999999995210 000000 0111222 2234567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHH------HHcCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQA------DKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~------~~~~~p~iiviNKiD~~~~ 222 (777)
+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+...
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999998653211 1222222 1247999999999998653
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=6.7e-16 Score=151.43 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH-
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~- 169 (777)
|+|+++|++|+|||||+++|... ... .+...+.|.......+.+++..+++|||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~---~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA---KPE---------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC---CCc---------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 68999999999999999999621 100 11123445555555566677899999999985321
Q ss_pred -------HHHHHHH-HhcCeEEEEEeCCCCCc---hHHHHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 170 -------LEVERAL-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 170 -------~~~~~~l-~~aD~~ilVvda~~g~~---~~~~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
.....++ ..+|++|+|+|+++... .....++..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 1122222 33699999999987532 2223455555555 899999999999864
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=5.6e-16 Score=152.20 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe-EEEEEeCCCCcc---
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD--- 167 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDTPG~~d--- 167 (777)
||+++|++|||||||+++|. +.....+ ...+.|+......+.+.+. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~---~~~~~v~---------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS---NAKPKIA---------------DYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh---cCCcccc---------------CCCccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 79999999999999999995 2111111 1123344444445556666 899999999742
Q ss_pred ----hHHHHHHHHHhcCeEEEEEeCCCC-CchHHH-HHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 168 ----FTLEVERALRVLDGAICLFDSVAG-VEPQSE-TVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 ----f~~~~~~~l~~aD~~ilVvda~~g-~~~~~~-~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
+...+.+.+..+|++++|+|++++ -..+.. .+.+.+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 344556667789999999999986 232332 33333433 3689999999999854
No 127
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.69 E-value=1.1e-16 Score=138.62 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.7
Q ss_pred EEEEEEee---cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccc
Q 004038 392 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (777)
Q Consensus 392 ~~V~K~~~---~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 468 (777)
++|||+.+ +|+.|+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 48999999 999999999999999999999999988887899999999999999999999999999999999999999
Q ss_pred eecc
Q 004038 469 TLCD 472 (777)
Q Consensus 469 tL~~ 472 (777)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=5.4e-16 Score=150.85 Aligned_cols=110 Identities=23% Similarity=0.192 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|++|+|||||+++|.. +... ++ . .|+......+.+.+..+++|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~------------~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVV------------TT---I----PTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCc------------Cc---C----CccCcCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 489999999999999999951 1110 00 0 0222222345567789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchH-HHHHH-HHHHH---cCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQ-SETVW-RQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~-~~~~~-~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
+..+++.+|++|+|+|+++..... ..+.+ ..+.. .++|+++|+||+|+.+.
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 889999999999999998753221 12222 22222 47999999999998654
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=8.4e-16 Score=183.79 Aligned_cols=120 Identities=23% Similarity=0.373 Sum_probs=99.1
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
......++|+|+|++|+|||||+|+|+ |.... ..+...|+|.+.......|.+..++||||||
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~---~~~~~--------------iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G 332 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRIL---GRREA--------------VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHh---CCCce--------------eecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence 344566899999999999999999996 21111 1122467888887778889999999999999
Q ss_pred Ccc--------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 165 HVD--------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~d--------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.. +...+..+++.+|++|+|+|+.++....+..+.+.++..++|+++|+||+|+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 333 WEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred cCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 763 556677889999999999999999999988899999999999999999999753
No 130
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.67 E-value=2e-16 Score=136.85 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.3
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccce
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (777)
++++|||+.++++.|+++|+|||+|+|++||.|++...++.+++.+|+.++|.+..+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 47899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecc
Q 004038 470 LCD 472 (777)
Q Consensus 470 L~~ 472 (777)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 963
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=6.1e-16 Score=184.97 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=92.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
...++|+++|++|+|||||+|+|+... .. ......|+|++.....+.+++..++||||||+.+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~---~~--------------~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEE---RA--------------VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc---cc--------------ccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 456899999999999999999996211 10 1112356677766667778889999999999642
Q ss_pred ---------hHHH--HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 ---------f~~~--~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+... ...+++.+|++++|+|++++...++..++..+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 2211 34567899999999999999999999999988889999999999999864
No 132
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=6.2e-16 Score=149.70 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=81.3
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH---
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--- 171 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~--- 171 (777)
++|++|+|||||++++. +.... ....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~---~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQK---------------VGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHh---cCccc---------------ccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 58999999999999995 22111 1123577887777788888889999999999876532
Q ss_pred ---HHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 172 ---VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ---~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
...++. .+|++|+|+|+.+. .+....+..+...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 334443 89999999999874 33344556677789999999999998643
No 133
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=9.7e-16 Score=148.78 Aligned_cols=110 Identities=23% Similarity=0.206 Sum_probs=78.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|+.|+|||||+++++... .. . ...|+......+.+.+..+.+|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~---~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV---T----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC---C----------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 48999999999999999996221 00 0 011222233345566789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHH----HHHcCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVE-PQSETVWRQ----ADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~----~~~~~~p~iiviNKiD~~~~ 222 (777)
....++.+|++++|+|++.+.. ......+.. ....+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 8889999999999999998622 122223322 22358999999999998653
No 134
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.67 E-value=1.3e-15 Score=148.72 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++++. +..... .....+.++......+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM--DGYEPQ--------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCCC--------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 799999999999999999972 111000 0001122222222233334567899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc--CCCEEEEEEccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY--GVPRICFVNKMDRL 220 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iiviNKiD~~ 220 (777)
...+++.+|++|+|+|++++...+... ++..+++. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999876544433 34445443 79999999999974
No 135
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=1.9e-15 Score=149.79 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|. .+.... ...|+......+.+++..+.+|||||+..|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~--~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 72 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL--LGEVVH-------------------TSPTIGSNVEEIVYKNIRFLMWDIGGQESL 72 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHc--cCCCCC-------------------cCCccccceEEEEECCeEEEEEECCCCHHH
Confidence 35689999999999999999996 221100 011223333456667889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchH--HHHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~--~~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
...+..+++.+|++|+|+|+++..... ...+.+.+.. .++|+++++||+|+.+
T Consensus 73 ~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 888899999999999999999753221 1223333322 3689999999999865
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=153.51 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|++|+|||||+|+|. +... ..+..+|+|..... +.+. .+++|||||+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~---~~~~---------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 64 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELT---GKKV---------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGF 64 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCC---------------ccCCCCceeeCceE--Eeec--ceEEEeCCcccc
Confidence 445789999999999999999995 2111 11223466655433 3333 689999999632
Q ss_pred -----------hHHHHHH----HHHhcCeEEEEEeCCCC-----------CchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 -----------FTLEVER----ALRVLDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 -----------f~~~~~~----~l~~aD~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
|...+.. .+..+|++++|+|+... ....+.+++..+...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 65 MSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIK 144 (201)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccC
Confidence 2222222 33456899999999742 223456677777778999999999999865
Q ss_pred cc
Q 004038 222 AN 223 (777)
Q Consensus 222 ~~ 223 (777)
.+
T Consensus 145 ~~ 146 (201)
T PRK04213 145 NR 146 (201)
T ss_pred cH
Confidence 43
No 137
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.66 E-value=3.4e-16 Score=134.70 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=77.1
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccce
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 469 (777)
++++|||+.+|++ |+++|+|||+|+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5789999999988 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecc
Q 004038 470 LCD 472 (777)
Q Consensus 470 L~~ 472 (777)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 973
No 138
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.66 E-value=8.2e-16 Score=149.97 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC----c
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~----~ 166 (777)
++|+++|++|+|||||+|+|. |.... . .....+.|... .+|||||+ .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~~----------------~--------~~~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYTL----------------A--------RKTQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCcc----------------C--------ccceEEEECCC--CcccCCccccCCH
Confidence 479999999999999999984 31100 0 01111222222 37999997 3
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
++..++..+++.+|++++|+|++++.......++.. ..+.|+++++||+|+...
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 566667778899999999999998765444333332 246899999999998653
No 139
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.66 E-value=3e-15 Score=145.95 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=75.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
.+|+++|.+|+|||||+++++...... .+.+ .+.......+.++ ...+++|||||+.+|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~-------------~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT-------------DYDP------TIEDSYTKQCEIDGQWAILDILDTAGQEEF 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc-------------ccCC------CccceEEEEEEECCEEEEEEEEECCCCcch
Confidence 589999999999999999997321100 0000 0000011112223 357889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH----HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.......++.+|++++|+|+++....+... .+..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 999999999999999999999754332222 222222 24789999999999854
No 140
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=5.4e-15 Score=143.48 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=83.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
...|+++|.+|+|||||+|+|+ |....... ...+.+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~---~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV---GQKISIVS--------------PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCceEecc--------------CCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 4679999999999999999996 22111100 011122222333344456789999999986532
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 --------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
......+..+|++++|+|+.+........+++.+...+.|.++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 3345668899999999999998767777777888888899999999999863
No 141
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-15 Score=155.06 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=93.7
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
...+..+|++||.+|+|||||+|.|+ |. ...+..++..+|.....+.+..+..++.|.||||.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mi---g~--------------kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMI---GQ--------------KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGL 130 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhh---CC--------------ccccccccccceeeeeeEEEecCceEEEEecCCcc
Confidence 34678999999999999999999996 21 11234445667888888888889999999999996
Q ss_pred c------------chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc-CCCEEEEEEccCCCC
Q 004038 166 V------------DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~------------df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~iiviNKiD~~~ 221 (777)
. .+......++..||.+++|+|+++.-....-.+++.+.++ .+|-++|+||+|...
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 4 2556788999999999999999963333334456666554 799999999999875
No 142
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.65 E-value=2.6e-15 Score=147.91 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|+.|+|||||+++|.. +... .. ...-|.++ ..+...+..+++|||||+..|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~--~~~~------------~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKL--GQSV------------TT---IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHcc--CCCc------------cc---cCCcccce----EEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999951 1110 00 00112222 2334467889999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-HHHHHHH-HHH---HcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~-~~~---~~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++|+|+|+++.... .....+. .+. ..++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 8888889999999999999975322 1222232 222 23689999999999864
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=2.2e-15 Score=151.25 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|+.|+|||||+++|. .+... . ...|+......+.+.+..+.+|||||+.+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~--~~~~~---~----------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~~ 75 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK--DDRLA---Q----------------HVPTLHPTSEELTIGNIKFKTFDLGGHEQ 75 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh--cCCCc---c----------------cCCccCcceEEEEECCEEEEEEECCCCHH
Confidence 445789999999999999999995 11110 0 00122223345666788999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHH----HHcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA----DKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~----~~~~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++++|+|+.+.... .....+..+ ...+.|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 888888899999999999999864221 122222222 235699999999999865
No 144
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=2.2e-15 Score=149.96 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=85.9
Q ss_pred ccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeC
Q 004038 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 83 ~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
...+..+..+|+|+|++|+|||||+|+|..... ... .....|.|....... ++ ..+.+|||
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~---------------~~~~~~~t~~~~~~~--~~-~~~~liDt 71 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKK-LAR---------------TSKTPGRTQLINFFE--VN-DGFRLVDL 71 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---------------ccCCCCcceEEEEEE--eC-CcEEEEeC
Confidence 344557788999999999999999999962210 000 011234454433322 22 36999999
Q ss_pred CCCcc----------hHHHHHHHHH---hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 163 PG~~d----------f~~~~~~~l~---~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
||+.+ |...+..+++ .+|++++|+|+..+...++..+++.+...++|+++|+||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99742 3333334444 46899999999999999999888999889999999999999864
No 145
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=2.6e-15 Score=170.64 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc---
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d--- 167 (777)
++|+++|++|+|||||+|+|+ +..... .....|+|.+.....+.|.+..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~---~~~~~~--------------v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT---GKRDAI--------------VADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCcee--------------eCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 579999999999999999996 211110 112356777777777888899999999999987
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 168 -----f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
+...+..+++.+|++|+|+|+.++....+..+.+++++.++|+++|+||+|..
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 34446778899999999999999999888888899999999999999999964
No 146
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.64 E-value=3.3e-15 Score=145.48 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+.. ..... .....+.........+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN--KFKED--------------SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCCC--------------CCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 7999999999999999999722 11000 0001112222222223333467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH---HcCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~iiviNKiD~~~ 221 (777)
....++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 89999999999999999987655443333 3332 34889999999999854
No 147
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=5.7e-15 Score=146.53 Aligned_cols=112 Identities=19% Similarity=0.110 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|..|+|||||++++. .|... ++ . + |+......+.+++..+.+|||||+..|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~--~~~~~------------~~---~--~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLK--LGESV------------TT---I--P--TIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh--cCCCC------------Cc---C--C--ccccceEEEEECCEEEEEEECCCChhhH
Confidence 4689999999999999999995 22110 00 0 1 2222223345577899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 170 LEVERALRVLDGAICLFDSVAGVE-PQSETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
..+..+++.+|++|+|+|+++... ....+.+..+.. .++|+++|+||+|+.+.
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 888889999999999999987432 222333433321 36899999999998643
No 148
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=3.7e-15 Score=149.09 Aligned_cols=113 Identities=18% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|.+|+|||||+++|.. +... .+ . .|.......+.+++..+++|||||+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~--~~~~---~~------------~----~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN--DRLA---QH------------Q----PTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc--CCCc---cc------------C----CccccceEEEEECCEEEEEEECCCCHH
Confidence 4457999999999999999999961 1110 00 0 122222334556788999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
+......+++.+|++|+|+|+++.... .....+..+. ..++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 888888999999999999999875322 1222232222 25899999999999864
No 149
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=4.3e-15 Score=144.99 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=76.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||++++. .+... .+.+ .-|.. ...+......+++|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~--~~~~~------------~~~p---t~g~~----~~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK--LGEIV------------TTIP---TIGFN----VETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHh--cCCCc------------ccCC---CCCcc----eEEEEECCEEEEEEECCCCHhHHHH
Confidence 68999999999999999995 22111 0000 11211 2234456788999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVE-PQSETVWRQA-DK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~p~iiviNKiD~~~ 221 (777)
+..+++.+|++|+|+|+++... .+..+.+..+ .. .+.|+++++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 8889999999999999986432 1122233322 22 2589999999999864
No 150
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=3.2e-15 Score=146.72 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
+..++|+++|+.|+|||||+++|.. +.... .....++++.....+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP----------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 4568999999999999999999961 21110 0011122233333445555 45788999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHH---HHcCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++++|+|+.++........| ..+ ...++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999889999999999999999876443322222 222 334789999999999753
No 151
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=5.8e-15 Score=150.08 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=76.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe-EEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDTPG~~ 166 (777)
+..++|+|+|++|||||||+++|+... . .. ....+.|+......+.+.+. .+++|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~-~~---------------~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--V-YA---------------EDQLFATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--h-cc---------------CCccceeccceeEEEEecCCceEEEeCCCccc
Confidence 456899999999999999999996211 0 00 00112344444444555454 89999999985
Q ss_pred ch-H-------HHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 167 DF-T-------LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df-~-------~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
+. . ......+..+|++++|+|++++...... .+.+.+.. .++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 31 1 1122346789999999999987654433 22233333 46899999999998653
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.64 E-value=3.8e-15 Score=143.66 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=84.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|++|+|||||+++|..... .. ....+++|.......+.+.+..+++|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AI---------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--Ee---------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc
Confidence 3799999999999999999962110 00 011245566665666777788999999999987642
Q ss_pred --------HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 171 --------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 171 --------~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+...+..+|++++|+|+...........+.. ..+.|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 24457789999999999998766666655554 568999999999998653
No 153
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=6.8e-15 Score=143.39 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|++|+|||||+++|+. +.... ......|.+.......+...+..+.+|||||+..|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~--~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~ 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVK--NEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 3799999999999999999972 11110 0111123233333333444456789999999998888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEP-QSETVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
.....++.+|++++|+|+++.... +...++..+... ++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 888889999999999999865432 223333444333 588999999999763
No 154
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.63 E-value=9.8e-15 Score=141.99 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=79.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|++|+|||||+++|+...-. .+..++++.+.....+.+++ ..+++|||||+..|.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD------------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 7999999999999999999621110 01123344444444444444 468999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHH-HHc--CCCEEEEEEccCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQA-DKY--GVPRICFVNKMDRL 220 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~-~~~--~~p~iiviNKiD~~ 220 (777)
......++.+|++++|+|+++....+... .+..+ ... ++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 88899999999999999999765433332 33333 233 48999999999985
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=4.5e-15 Score=148.32 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEE-EecCeEEEEEeCCCCcchH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-YWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~-~~~~~~i~liDTPG~~df~ 169 (777)
..|+++|+.|+|||||++++++.... .. ....|.+........ .+.+..+++|||||+..|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~--------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV--------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC--------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 47999999999999999999622110 00 001122211111111 2346789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-----HHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-----ETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-----~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
..+...++.+|++|+|+|+++...... .+++......++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 888888999999999999988532222 1222333345799999999999863
No 156
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=8.8e-15 Score=142.46 Aligned_cols=112 Identities=17% Similarity=0.305 Sum_probs=76.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----cCeEEEEEeCCCCcc
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGHVD 167 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liDTPG~~d 167 (777)
+|+++|..|+|||||++++.. +.... +..+.+..+.....+.+ ....+++|||||+.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVK--GIFTK----------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCC----------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH
Confidence 699999999999999999962 11100 00111111111122222 246799999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHH-HHHH--cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~-~~~~--~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++++|+|+.+.........|. .+.+ .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9988899999999999999998765444433332 2222 3799999999999854
No 157
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.63 E-value=5.1e-15 Score=145.86 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=76.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++|.. +.. .. ...|+......+.+.+..+++|||||+.+|...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~--~~~------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ--DEF------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc--CCC------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhcchH
Confidence 488999999999999999962 110 00 011222222345667889999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
+..+++.+|++++|+|+++.-.. .....+..+. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 88999999999999999874221 1222233222 12589999999999854
No 158
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=7.6e-15 Score=143.32 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||++++.... ... . ... +..+ .......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~--~~~--~-~~~-t~~~-----------~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH--FVD--D-YDP-TIED-----------SYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCc--c-cCC-chhh-----------hEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 68999999999999999997221 100 0 000 0000 00011112222367889999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHH----HHcCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQA----DKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~----~~~~~p~iiviNKiD~~~ 221 (777)
....++.+|++++|+|+.+........- +..+ ...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8899999999999999997543222222 2222 223789999999999754
No 159
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.63 E-value=1e-14 Score=141.59 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
.+|+++|.+|+|||||+++|+. +.... .. .. +. +.+ ....+..+ ...+++|||||+.+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~--~~~~~--~~-~~-t~----------~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ--NHFVD--EY-DP-TI----------EDS---YRKQVVIDGETCLLDILDTAGQEEY 62 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCcC--Cc-CC-cc----------hhe---EEEEEEECCEEEEEEEEECCCCcch
Confidence 3799999999999999999972 21100 00 00 00 000 01112223 356889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH----HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|..+....+... .+..+. ..++|+++|+||+|+..
T Consensus 63 ~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 63 SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999998744323222 222222 34789999999999864
No 160
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=1e-14 Score=142.11 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=79.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|++|+|||||+++|+.. ... ....+.++.......+.+.+ ..+++|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG--KFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 7999999999999999999611 110 01111222222333344444 578999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 8889999999999999999986554443333 33333 4689999999999753
No 161
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.62 E-value=1.3e-14 Score=144.80 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|..|+|||||+++|. .+... . .....|. ....+.+.+..+++|||||+..|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~--~~~~~------------~---~~pt~g~----~~~~~~~~~~~~~i~D~~Gq~~~ 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLK--LGEIV------------T---TIPTIGF----NVETVEYKNISFTVWDVGGQDKI 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHc--cCCCc------------c---ccCCcce----eEEEEEECCEEEEEEECCCCHHH
Confidence 34689999999999999999995 12110 0 0111122 22345567889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHH-HH---cCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA-DK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~iiviNKiD~~~~ 222 (777)
...+..+++.+|++|+|+|+++...... ...+... .. .++|+++|+||+|+.+.
T Consensus 75 ~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 8888899999999999999997532221 2222222 11 37899999999998653
No 162
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=3.6e-15 Score=162.01 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=85.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPG 164 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG 164 (777)
..+-+..|+|||.+|||||||+++|. +....++. ..++|+......+.+ ++..+++|||||
T Consensus 154 elk~~adVglVG~PNaGKSTLln~ls---~a~~~va~---------------ypfTT~~p~~G~v~~~~~~~~~i~D~PG 215 (335)
T PRK12299 154 ELKLLADVGLVGLPNAGKSTLISAVS---AAKPKIAD---------------YPFTTLHPNLGVVRVDDYKSFVIADIPG 215 (335)
T ss_pred EEcccCCEEEEcCCCCCHHHHHHHHH---cCCCccCC---------------CCCceeCceEEEEEeCCCcEEEEEeCCC
Confidence 34556789999999999999999995 22212111 134677777777777 557899999999
Q ss_pred Ccc-------hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH-----cCCCEEEEEEccCCCCc
Q 004038 165 HVD-------FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK-----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~d-------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~iiviNKiD~~~~ 222 (777)
..+ +.....+.+..+|++|+|+|+++....+.. .+.+.+.. .++|+++|+||+|+...
T Consensus 216 li~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred ccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 853 455677788899999999999864333333 33344443 36899999999998643
No 163
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=1.2e-14 Score=146.48 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=84.9
Q ss_pred hccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEe
Q 004038 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (777)
Q Consensus 82 ~~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 161 (777)
.+..+....++|+++|++|+|||||+++|+.... ... .....|.|....... + +..+.|||
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---------------~~~~~~~t~~~~~~~--~-~~~l~l~D 76 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---------------TSKTPGRTQLINFFE--V-NDKLRLVD 76 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---------------ccCCCCceeEEEEEe--c-CCeEEEeC
Confidence 3555667889999999999999999999962110 000 111234454443322 2 46899999
Q ss_pred CCCCc----------chHHHHHHHHHh---cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 162 TPGHV----------DFTLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 162 TPG~~----------df~~~~~~~l~~---aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
|||+. .+......+++. ++++++|+|+..+.......+++.+...++|+++++||+|+...
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 99974 233333444444 46888999999888777777778888889999999999998643
No 164
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.62 E-value=7.8e-16 Score=158.85 Aligned_cols=162 Identities=16% Similarity=0.248 Sum_probs=120.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcc-eeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g-~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
....+.|+++|++|+|||||++.|+...... .. ....| +++ ....+.+++++||||+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~------~~~~g~i~i------~~~~~~~i~~vDtPg~ 93 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NI------SDIKGPITV------VTGKKRRLTFIECPND 93 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC----------cc------ccccccEEE------EecCCceEEEEeCCch
Confidence 3456789999999999999999997331110 00 01123 221 1225788999999997
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEE-EEEccCCCCc--chHhHHHHHHHHhCCCce--
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA--NFFRTRDMIVTNLGAKPL-- 240 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ii-viNKiD~~~~--~~~~~~~~i~~~l~~~~~-- 240 (777)
. ..+...++.+|.+++|+|+.++...++..++..+...++|.++ |+||+|+... ...+..++|++.+.....
T Consensus 94 ~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (225)
T cd01882 94 I---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQG 170 (225)
T ss_pred H---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence 5 6777888999999999999999999999999999999999655 9999999643 355666777665442111
Q ss_pred ----------eEEeccCCCCCceeeeecccceEEEecCcCCCce
Q 004038 241 ----------VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAK 274 (777)
Q Consensus 241 ----------~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~ 274 (777)
++++|..+...|.|+++++.++.+.|.+.+ ++.
T Consensus 171 ~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r-~y~ 213 (225)
T cd01882 171 AKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSH-PYV 213 (225)
T ss_pred CcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCC-CeE
Confidence 345678888899999999999999997643 443
No 165
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.62 E-value=8.9e-15 Score=146.13 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=77.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|..|+|||||++++. .+... ++ .. |+......+...+..+++|||||+..|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~--~~~~~------------~~---~~----T~~~~~~~~~~~~~~~~l~D~~G~~~~ 74 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLK--LGEVV------------TT---IP----TIGFNVETVEYKNLKFTMWDVGGQDKL 74 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHh--cCCcc------------cc---CC----ccccceEEEEECCEEEEEEECCCCHhH
Confidence 34689999999999999999995 22110 00 01 111222234557789999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQA-DK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~p~iiviNKiD~~~ 221 (777)
...+..+++.+|++|+|+|+++.-. ......+... .. .+.|+++|+||.|+..
T Consensus 75 ~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 75 RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 8888999999999999999986321 1112223222 22 3689999999999865
No 166
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.7e-15 Score=164.23 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~ 166 (777)
+-+-.|+|+|.+|||||||+|+|. +....+ ...+++|+......+.+.+ ..+.|+||||+.
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt---~~k~~v---------------s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~ 218 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVS---AAKPKV---------------ADYPFTTLVPNLGVVRVDDERSFVVADIPGLI 218 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHh---CCcccc---------------cCCCCCccCcEEEEEEeCCCcEEEEEeCCCcc
Confidence 445689999999999999999995 322111 1235567777777777765 469999999986
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCC----CCchHHHHHHHHHHHc-----CCCEEEEEEccCCCC
Q 004038 167 D-------FTLEVERALRVLDGAICLFDSVA----GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (777)
Q Consensus 167 d-------f~~~~~~~l~~aD~~ilVvda~~----g~~~~~~~~~~~~~~~-----~~p~iiviNKiD~~~ 221 (777)
+ +...+.+.+..+|++++|+|+.. ....+...+++.+..+ +.|.++|+||+|+..
T Consensus 219 ~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 219 EGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred ccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 4 44567788999999999999872 1223334455555543 689999999999864
No 167
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.62 E-value=1e-14 Score=143.03 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|..|+|||||+++|.. +.... .+ ....|++..............+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~--~~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD--DSFTS-----------AF---VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC---CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4799999999999999999962 11100 00 00012222111111122336799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.....++.+|++++|+|.++....+. ...++.+.+ .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 88999999999999999986533222 223334433 3678999999999854
No 168
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=5.7e-15 Score=160.37 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=81.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPG 164 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG 164 (777)
..+-+..|+|+|.+|||||||+++|. +....++. ...+|.......+.+.+ ..++|+||||
T Consensus 153 elk~~adV~lvG~pnaGKSTLl~~lt---~~~~~va~---------------y~fTT~~p~ig~v~~~~~~~~~i~D~PG 214 (329)
T TIGR02729 153 ELKLLADVGLVGLPNAGKSTLISAVS---AAKPKIAD---------------YPFTTLVPNLGVVRVDDGRSFVIADIPG 214 (329)
T ss_pred EeeccccEEEEcCCCCCHHHHHHHHh---cCCccccC---------------CCCCccCCEEEEEEeCCceEEEEEeCCC
Confidence 34556789999999999999999995 22111111 12345555555666666 8999999999
Q ss_pred Ccc-------hHHHHHHHHHhcCeEEEEEeCCCC---Cc-hHHHHHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 165 HVD-------FTLEVERALRVLDGAICLFDSVAG---VE-PQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~d-------f~~~~~~~l~~aD~~ilVvda~~g---~~-~~~~~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
+.+ +.....+.+..+|++|+|+|+++. .. .+...+.+.+.. .++|+++|+||+|+..
T Consensus 215 li~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 215 LIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred cccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 863 445567778889999999999864 12 222223333433 3689999999999864
No 169
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.62 E-value=9.4e-15 Score=142.22 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+... ... ......+.+.......+......+.+|||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDT--FDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 78999999999999999996211 100 01112222332222223333467999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH----HcCCCEEEEEEccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRL 220 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~iiviNKiD~~ 220 (777)
....++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 88889999999999999876544433322 2232 3478999999999986
No 170
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.61 E-value=1.3e-14 Score=142.66 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|++|+|||||+++|+... .... . ....+.+. ....+.+.+ ..+++|||||+.+|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~--~~~~-~-------------~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~ 63 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK--FSNQ-Y-------------KATIGADF--LTKEVTVDDKLVTLQIWDTAGQERFQ 63 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCcC-c-------------CCccceEE--EEEEEEECCEEEEEEEEeCCChHHHH
Confidence 79999999999999999996221 0000 0 00011111 111233333 467899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHH-H-HHH------cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-Q-ADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~-~-~~~------~~~p~iiviNKiD~~~ 221 (777)
......++.+|++|+|+|+.+....+....|. . ... .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 64 SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 88889999999999999998765433222221 1 111 2789999999999864
No 171
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.61 E-value=1.6e-14 Score=139.12 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=77.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHHH
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~ 172 (777)
|+++|+.|+|||||+++|. +... ..++. + |+......+...+..+.+|||||+..|...+
T Consensus 2 i~i~G~~~~GKssl~~~l~---~~~~----------~~~~~-----~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA---GGQF----------SEDTI-----P--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc---cCCC----------CcCcc-----C--CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 7999999999999999995 2110 00110 1 2222223344566889999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHHH----HcCCCEEEEEEccCCCCc
Q 004038 173 ERALRVLDGAICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 173 ~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~~----~~~~p~iiviNKiD~~~~ 222 (777)
..+++.+|++++|+|+.+... .+....+..+. ..++|+++|+||+|....
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999999999999999987432 22223333332 247899999999998653
No 172
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.61 E-value=1.1e-14 Score=142.34 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|++|+|||||+++|+... ... . ....-|.+.......+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~--~~~--~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR--FVS--K------------YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--C------------CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 79999999999999999996211 000 0 0000111111222222233468899999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH--------cCCCEEEEEEccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--------YGVPRICFVNKMDRL 220 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~--------~~~p~iiviNKiD~~ 220 (777)
....++.+|++|+|+|.++....+... .+..+.+ .+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 888899999999999999754333222 2222322 358899999999985
No 173
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=1.2e-14 Score=159.20 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~ 166 (777)
.....|+++|++|+|||||+|+|+ +... . .....+.|++.....+.+ ++..+.||||||+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~---~~~~-~--------------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALT---GADV-Y--------------AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh---CCce-e--------------eccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 355899999999999999999995 2210 0 011234455555555666 56799999999983
Q ss_pred -ch-------HHHHHHHHHhcCeEEEEEeCCCCCchHHH----HHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 -DF-------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 -df-------~~~~~~~l~~aD~~ilVvda~~g~~~~~~----~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+. ...+...++.+|++|+|+|++++...... .+++.+...++|+++|+||+|+..
T Consensus 249 ~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 249 RDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 21 11234467899999999999987654333 233333334789999999999853
No 174
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.61 E-value=3.5e-15 Score=129.96 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.6
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC---ceeecceeEEeccCceeecceeecCCEEEEcCCCcccc
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 466 (777)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...+ +.+++++|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999987653 35789999999999999999999999999999999999
Q ss_pred cceecc
Q 004038 467 GETLCD 472 (777)
Q Consensus 467 GdtL~~ 472 (777)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 175
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=8e-15 Score=148.47 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|+.|+|||||+++++. +.... . ....+.......+.+.+ ..++||||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~--~~~~~--~---------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY--DTFEP--K---------------YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCc--c---------------CCCchhhheeEEEEECCEEEEEEEEECCCchhhh
Confidence 489999999999999999972 21110 0 00011111122333444 578999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH----HcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 8888899999999999999975443322222 2222 25799999999999864
No 176
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.60 E-value=2.2e-14 Score=140.93 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|.+|+|||||++++.. +.... +....+........+.+.+ ..+.+|||||+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~--~~f~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSE--DSFNP----------------SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhh--CcCCc----------------ccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 357999999999999999999962 11100 0001111111222233333 578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+|.......++.+|++|+|+|++++..-+.. ..+..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 64 RFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9988888899999999999999876543332 22333333 3689999999999864
No 177
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=1.4e-14 Score=145.52 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=77.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|.+|+|||||+++++. +.... .+.+ ..+.+. .....+......+++|||||+.+|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~--~~~~~-----------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQ--NHFID-----------EYDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CCCCc-----------CcCC---chhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 36899999999999999999972 21100 0000 001111 1111223334678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH----HcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
..+..+++.+|++|+|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999764422222 223332 23789999999999753
No 178
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.3e-14 Score=145.50 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---cCeEEEEEeCCCCcch
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDF 168 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDTPG~~df 168 (777)
+|+++|.+|+|||||+++|+. +.... ...+.+..+.....+.+ ....+.+|||||+..|
T Consensus 2 KivivG~~~vGKTsli~~l~~--~~~~~----------------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~ 63 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVH--GIFSQ----------------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF 63 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC----------------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh
Confidence 699999999999999999972 21100 00011111111222233 3467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH-------HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-------KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~-------~~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++|+|+|.++...-+....| ..+. ..++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 64 GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 88888999999999999999875544333322 2222 24689999999999863
No 179
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.60 E-value=2.3e-14 Score=140.99 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++++. +...... ....|.+..............+++|||||+..|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~--~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD--KRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 46899999999999999999962 1110000 0011233322323333334679999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++|+|+|+++....+....| ..++. .++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 8888999999999999999975544443333 33333 3789999999999763
No 180
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.60 E-value=4.9e-15 Score=141.99 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df 168 (777)
.+|+++|++|+|||||+++|+... .+.+..++++.......+.+++ ..+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK------------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC------------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 589999999999999999996211 1122234556666555566666 78999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
........+.++.++.++|.... ...+...++..+.. +.|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 77776777777777777776543 22333334444433 8999999999998654
No 181
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=7.4e-15 Score=166.33 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
...+|+++|++|+|||||+|+|+ +.... ......|+|.+.....+.+++..+++|||||+.++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~---~~~~a--------------~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~ 276 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALL---GEERA--------------IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET 276 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHh---CCCCc--------------ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC
Confidence 34689999999999999999996 21110 11223566777777777888899999999999765
Q ss_pred HHH--------HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 169 TLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~--------~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
... ....++.+|++++|+|++++........|.. ..++|+++|+||+|+..
T Consensus 277 ~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 277 DDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 332 4457889999999999998877666666655 45799999999999864
No 182
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=1.2e-14 Score=143.42 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|+.|+|||||+++|. +.... . .....|++ ...+.+.+..+.+|||||+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~---~~~~~-----------~---~~~t~g~~----~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA---SEDIS-----------H---ITPTQGFN----IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHh---cCCCc-----------c---cCCCCCcc----eEEEEECCEEEEEEECCCCHH
Confidence 446789999999999999999995 21100 0 00112222 234455678999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCch-HHHHHH----HHHHHcCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEP-QSETVW----RQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~----~~~~~~~~p~iiviNKiD~~~~ 222 (777)
|...+...++.+|++++|+|+.+.... .....+ ......++|+++++||+|+...
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 888888889999999999999864221 112222 2223457999999999998653
No 183
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.60 E-value=2.9e-14 Score=139.68 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~d 167 (777)
..+|+++|.+|+|||||+++++. +.... .....++.......+..+ ...+.+|||||+.+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD--DTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc--CCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHh
Confidence 36899999999999999999962 11100 001112222222223333 35789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|.......++.+|++|+|+|+++....... .++..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 988888999999999999999874432222 23333333 3689999999999754
No 184
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.60 E-value=3.1e-14 Score=139.19 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
.+|+++|.+|+|||||+++++ .|..... . .. +. +.+. ...+..+ ...+++|||||+..|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~--~~~~~~~--~-~~-t~----------~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV--QGIFVEK--Y-DP-TI----------EDSY---RKQVEVDGQQCMLEILDTAGTEQF 62 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH--hCCCCcc--c-CC-cc----------hheE---EEEEEECCEEEEEEEEECCCcccc
Confidence 379999999999999999997 2221110 0 00 00 0011 1122333 456789999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.......++.+|++++|+|.++....+.. ..+..+. ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 99999999999999999999865433322 2333332 24789999999999854
No 185
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.60 E-value=3.3e-14 Score=138.45 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|.+|+|||||+++++. +.... . ... +..+ . ......+......+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~--~-~~~-t~~~----------~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ--GIFVE--K-YDP-TIED----------S-YRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc--c-cCC-chhh----------h-EEEEEEECCEEEEEEEEECCCccccch
Confidence 4799999999999999999972 21110 0 000 0000 0 001111222235678999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++++|+|.++....... ..++.+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 888899999999999999875433222 23333332 3689999999999753
No 186
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60 E-value=1.6e-14 Score=141.94 Aligned_cols=113 Identities=24% Similarity=0.216 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++++. +.... . .....+..+.............+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~--~~~~~-----------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT--GEFEK-----------K---YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCC-----------C---CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 799999999999999999972 21110 0 0001112221111112224467899999999988777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc--CCCEEEEEEccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY--GVPRICFVNKMDRL 220 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iiviNKiD~~ 220 (777)
....++.+|++|+|+|.+++...+... .+..+... ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 777889999999999999875544433 22333332 69999999999986
No 187
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.2e-14 Score=161.80 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=82.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~ 165 (777)
.+-+..|+++|.+|||||||+++|. +...+++. ..++|+......+.+. +..++|+||||+
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt---~ak~kIa~---------------ypfTTl~PnlG~v~~~~~~~~~laD~PGl 216 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVS---NAKPKIAN---------------YHFTTLVPNLGVVETDDGRSFVMADIPGL 216 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHH---cCCCcccc---------------CCcceeceEEEEEEEeCCceEEEEECCCC
Confidence 3445689999999999999999995 32222211 2345677776667776 789999999998
Q ss_pred cc-------hHHHHHHHHHhcCeEEEEEeCCCC----CchHHHHHHHHHHH-----cCCCEEEEEEccCCC
Q 004038 166 VD-------FTLEVERALRVLDGAICLFDSVAG----VEPQSETVWRQADK-----YGVPRICFVNKMDRL 220 (777)
Q Consensus 166 ~d-------f~~~~~~~l~~aD~~ilVvda~~g----~~~~~~~~~~~~~~-----~~~p~iiviNKiD~~ 220 (777)
.. +.....+.+..+|++|+|+|+++. .......+.+.+.. .++|.++|+||+|+.
T Consensus 217 iega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 217 IEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred cccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 53 345566777889999999999753 11222334444443 378999999999974
No 188
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.60 E-value=1.8e-14 Score=140.02 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcchHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (777)
.|+++|.+|+|||||++++.. +.... . ....|.++ ..+.+ ....+++|||||+..|..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~--~~~~~------------~---~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH--AELVT------------T---IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc--CCccc------------c---cCccCcce----EEEEeCCceEEEEEECCCCHhHHH
Confidence 378999999999999999962 11100 0 00112211 11222 346899999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHH-H---HcCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA-D---KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~-~---~~~~p~iiviNKiD~~~ 221 (777)
.+...++.+|++|+|+|+.+..... ....+..+ + ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888899999999999999864211 11222222 2 25799999999999864
No 189
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.60 E-value=3.1e-14 Score=139.28 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~d 167 (777)
..+|+++|.+|+|||||+++|+. +... .+..+.++.......+...+ ..+.+|||||...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~--~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTR--NEFN----------------LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER 64 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 46899999999999999999961 1110 00011122222223333333 5789999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|.......++.+|++|+|+|+++....+... .+..+.+ .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 65 YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888888999999999999998644433322 2233333 2589999999999753
No 190
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.59 E-value=1.7e-14 Score=141.41 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|.+|+|||||+++++ .+..... +... -+.+. .....+......+.+|||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~--~~~f~~~--------~~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFV--KGTFRES--------YIPT------IEDTY-RQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHH--hCCCCCC--------cCCc------chheE-EEEEEECCEEEEEEEEECCCCCcchH
Confidence 469999999999999999997 2211100 0000 00011 11122333456789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH------cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~------~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++|+|+|.++...... ..++..+++ .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 88888999999999999998654433 334444443 4689999999999854
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=2.9e-14 Score=136.65 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=82.9
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCCcchH----
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT---- 169 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~df~---- 169 (777)
++|++|+|||||+++|...... . .....+.|.......+.+. ...+++|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA--I---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc--c---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 5899999999999999621110 0 1122344555554445444 6789999999998764
Q ss_pred ---HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 170 ---LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ---~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
......++.+|++++|+|+..........++......+.|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34556889999999999999988777776677777889999999999998754
No 192
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.59 E-value=4.5e-15 Score=129.20 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=74.3
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc-C---CCccc
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 465 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~ 465 (777)
|.++|||+.++++.|+++|+|||+|+|++||.|++...++++++++|+.+ +.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 47899999999999999999999999999999999887878999999955 7778999999999999995 3 67789
Q ss_pred ccceecc
Q 004038 466 TGETLCD 472 (777)
Q Consensus 466 ~GdtL~~ 472 (777)
+|||||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 193
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.59 E-value=2.4e-14 Score=145.23 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=79.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
.|+++|..|+|||||+.++.. +... .+....++.......+.+++ ..+++|||+|+..|.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~--~~f~----------------~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~ 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTD--DTFC----------------EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHh--CCCC----------------CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH
Confidence 589999999999999999962 2110 00011122222222344444 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
..+..+++.+|++|+|+|.++....+....| ..+.+ .++|+++|.||+|+..
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999999999999986655544433 33332 3689999999999853
No 194
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.59 E-value=3.3e-14 Score=141.25 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=76.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe------------cCeE
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------NKHR 156 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~------------~~~~ 156 (777)
...+|+++|..|+|||||++++... .... . ....+..+.....+.+ ....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~--~~~~--~--------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDN--KFNP--K--------------FITTVGIDFREKRVVYNSSGPGGTLGRGQRIH 64 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCc--c--------------CCCccceEEEEEEEEEcCccccccccCCCEEE
Confidence 4578999999999999999999621 1100 0 0000111111111111 2367
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCC
Q 004038 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 157 i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+.||||||+..|.......++.+|++|+|+|+++....+... ++..+.. .+.|+++|.||+|+..
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 899999999999888999999999999999998754433333 2233333 3688999999999854
No 195
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.2e-14 Score=163.55 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=83.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
..+-+..|+|||.+|||||||+|+|. +....++ ...++|+......+.+.+..++|+||||.
T Consensus 155 eLk~~adV~LVG~PNAGKSTLln~Ls---~akpkIa---------------dypfTTl~P~lGvv~~~~~~f~laDtPGl 216 (500)
T PRK12296 155 ELKSVADVGLVGFPSAGKSSLISALS---AAKPKIA---------------DYPFTTLVPNLGVVQAGDTRFTVADVPGL 216 (500)
T ss_pred EecccceEEEEEcCCCCHHHHHHHHh---cCCcccc---------------ccCcccccceEEEEEECCeEEEEEECCCC
Confidence 44566899999999999999999995 3222221 12467777777888888899999999997
Q ss_pred cc-------hHHHHHHHHHhcCeEEEEEeCCCCC-----chHHHHHHHHH--------------HHcCCCEEEEEEccCC
Q 004038 166 VD-------FTLEVERALRVLDGAICLFDSVAGV-----EPQSETVWRQA--------------DKYGVPRICFVNKMDR 219 (777)
Q Consensus 166 ~d-------f~~~~~~~l~~aD~~ilVvda~~g~-----~~~~~~~~~~~--------------~~~~~p~iiviNKiD~ 219 (777)
.+ ...+..+.+..+|++|+|||++... ......+.+.+ ...+.|+|+|+||+|+
T Consensus 217 iegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 217 IPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred ccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 53 2345677788899999999997421 11111111122 1246899999999998
Q ss_pred CC
Q 004038 220 LG 221 (777)
Q Consensus 220 ~~ 221 (777)
..
T Consensus 297 ~d 298 (500)
T PRK12296 297 PD 298 (500)
T ss_pred hh
Confidence 64
No 196
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=3e-14 Score=139.82 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|+.|+|||||+++|.. +.... .. + .. ....++.. .+......+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~--~~~~~--~~-~--~~--------~~~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVS--EEFPE--NV-P--RV--------LPEITIPA---DVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CcCCc--cC-C--Cc--------ccceEeee---eecCCeEEEEEEeCCCchhhhHH
Confidence 789999999999999999973 21110 00 0 00 00112111 12234578999999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHH-HHH-HHHHH--cCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
+...++.+|++++|+|++++...+.. ..| ..++. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88888999999999999986655542 223 33432 37899999999998653
No 197
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.59 E-value=2e-14 Score=139.85 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+... ... . .. .+..+. . .....+......+.+|||||+.+|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~--~-~~-~~~~~~----------~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVE--D-YE-PTKADS----------Y-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--Ccc--c-cC-Ccchhh----------E-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 79999999999999999997221 110 0 00 011010 0 011122223467999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
...+++.+|++++|+|..+.-... ....+.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999988643211 122222222 25899999999999864
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=4.7e-14 Score=135.33 Aligned_cols=125 Identities=21% Similarity=0.171 Sum_probs=101.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcce-eeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~-~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~d 167 (777)
..+|+++|..++||||++.++.+....... .+. .+.. ..+|.+|+.....++...+ +.++|+|||||.+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~-------~~s~--k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS-------SVSG--KGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc-------cccc--ccccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 458999999999999999999754432211 110 0000 1145688888888888876 8999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcC-CCEEEEEEccCCCCcc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~iiviNKiD~~~~~ 223 (777)
|.-.+....+.++++|++||++.+.....+++++.+...+ +|++|++||.|+..+.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 9999999999999999999999998887788888888877 9999999999998764
No 199
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.59 E-value=4.5e-14 Score=139.19 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=79.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+++++ .+... .+....+........+.+.+ ..+++|||||+.+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~--~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 63 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFC--AGRFP----------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHH--hCCCC----------------CccccceeEEEEEEEEEECCeEEEEEEEeCCChHH
Confidence 4689999999999999999996 22110 01111122222222333433 6899999999998
Q ss_pred hHH-HHHHHHHhcCeEEEEEeCCCCCchHHHHHHH-HHHH----cCCCEEEEEEccCCCC
Q 004038 168 FTL-EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~-~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~iiviNKiD~~~ 221 (777)
|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 874 4667788999999999999876655554443 4443 3589999999999864
No 200
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=1.3e-14 Score=138.48 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc----c
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----D 167 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~----d 167 (777)
+|+++|++|+|||||+++|. +... . ...|+ .+.+.. .+|||||.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~---~~~~------------~-------~~~t~-----~~~~~~---~~iDt~G~~~~~~~ 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ---GEEI------------L-------YKKTQ-----AVEYND---GAIDTPGEYVENRR 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc---CCcc------------c-------cccce-----eEEEcC---eeecCchhhhhhHH
Confidence 79999999999999999995 2100 0 00121 223332 689999983 2
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+...+..+++.+|++|+|+|++++...+...+++. .+.|+++|+||+|+..
T Consensus 52 ~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 52 LYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 33334456789999999999998877665444332 3459999999999853
No 201
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=2.6e-14 Score=160.96 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|++|+|||||+|+|+.... . . .....|+|.+.....+.+++..+++|||||+.+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~---a--------i------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR---A--------I------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC---c--------c------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 4457899999999999999999962111 0 0 112357777777778888999999999999976
Q ss_pred hHHH--------HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 168 FTLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~--------~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+... ...+++.+|++|+|+|++++...... ++..+...++|+++|+||+|+...
T Consensus 264 ~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 264 HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 5432 34678899999999999988765554 556666678999999999998643
No 202
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=3.6e-14 Score=136.50 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|........ .....+.+..............+++|||||+..|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 799999999999999999962111100 0011122222222222224478899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHc---CCCEEEEEEccCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRL 220 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iiviNKiD~~ 220 (777)
....++.+|++++|+|+.+...... ...+..+... ++|+++++||+|..
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 9999999999999999987433222 2334444443 48999999999985
No 203
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=3.8e-14 Score=139.06 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=78.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHHH
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~ 172 (777)
|+++|..|+|||||++++... ... . ++. .|+......+.+++..+.+|||||+.+|...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~--~~~--~---------~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE--RSL--E---------SVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCc--c---------ccc-------ccCCcceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 789999999999999999621 110 0 000 01111223456678899999999999999989
Q ss_pred HHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHH--HcCCCEEEEEEccCCCCc
Q 004038 173 ERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD--KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 173 ~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~--~~~~p~iiviNKiD~~~~ 222 (777)
..+++.+|++|+|+|+++..... ....+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 99999999999999998754322 222233332 258999999999998654
No 204
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.58 E-value=4.2e-14 Score=138.67 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|+.|+|||||++++. .+.... +. ....|.........+......+.+|||||+..|..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~--~~~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFT--EKKFMA-----------DC---PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHh--cCCCCC-----------CC---CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 589999999999999999996 221110 00 00011122222222222345789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHH---cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.....++.+|++|+|+|.++....+.... +..... .+.|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88999999999999999998654433332 233322 3678999999999854
No 205
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=3.9e-14 Score=139.36 Aligned_cols=111 Identities=22% Similarity=0.192 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++|. +... .. ...|+......+.+++..+++|||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~---~~~~--~~----------------~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ---GEIP--KK----------------VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh---CCCC--cc----------------ccCcccceEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999995 2110 00 011222223355667889999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHHH----cCCCEEEEEEccCCCCcc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iiviNKiD~~~~~ 223 (777)
+..+++.+|++|+|+|+++..... ....+..+.. .++|+++|+||+|+.+..
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999999999999754322 2333443332 478999999999987643
No 206
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2e-14 Score=156.73 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+-.+|+|+|.||+|||||+|+|+ +...++ ++| -.|+|.+.-...+..+|+.+.++||+|..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~---~~d~AI--------VTd------I~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALL---GRDRAI--------VTD------IAGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHh---cCCceE--------ecC------CCCCccceEEEEEEECCEEEEEEecCCcc
Confidence 3456789999999999999999997 322222 222 47899999999999999999999999986
Q ss_pred ch--------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 167 DF--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df--------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+- .......+..||.+++|+|++.+...++..++. +...+.|+++|+||+|+...
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 43 233566789999999999999998888888777 55678999999999998764
No 207
>PLN03118 Rab family protein; Provisional
Probab=99.58 E-value=3.6e-14 Score=145.14 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+|+|+.|+|||||+++|+. +.... .....|.+.......+......++||||||+.+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~--~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS--SSVED---------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh--CCCCC---------------cCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 3456899999999999999999972 21110 001112222222222222236789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHH-HH----HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-AD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~-~~----~~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++....+... .|.. +. ..+.|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9998999999999999999999865444332 3322 22 23678999999999864
No 208
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=5.8e-14 Score=138.04 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (777)
+|+++|.+|+|||||++++. .+.... .+.+ ..+ ......+.++ ...+.+|||||+.+|.
T Consensus 3 ki~liG~~~~GKTsli~~~~--~~~~~~-----------~~~~---t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 63 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFV--QNVFIE-----------SYDP---TIE---DSYRKQVEIDGRQCDLEILDTAGTEQFT 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH--hCCCCc-----------ccCC---cch---heEEEEEEECCEEEEEEEEeCCCcccch
Confidence 69999999999999999996 221110 0000 000 0111122222 3578899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-----HHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-----VWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
......++.+|++++|+|.++...-+... +++.....++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 64 AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999998754332222 22222234799999999999753
No 209
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=4.5e-14 Score=142.07 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||++++.. +... .+.... ..+.+.......+......++||||||+..|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~--~~~~-~~~~~~------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKD--GAFL-NGNFIA------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCC-ccCcCC------------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 689999999999999999962 1110 000000 0011111111222223367899999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
....++.+|++|+|+|+++...... ...+..+.+ .++|+++|+||+|+..
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 8888999999999999987543322 223333333 3689999999999753
No 210
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.57 E-value=6.9e-14 Score=137.56 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--cCeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDTPG~~ 166 (777)
...+|+++|.+|+|||||+++++. +.... +....+........+.+ ....+.+|||||+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCc----------------CcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 357899999999999999999961 11100 00011111111122233 33567899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH-------HcCCCEEEEEEccCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-------KYGVPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~-------~~~~p~iiviNKiD~~ 220 (777)
.|.......++.+|++++|+|.++....+....| ..+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 66 RFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 9988888899999999999999876433333222 2121 1468999999999975
No 211
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.57 E-value=7.4e-14 Score=135.48 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcce--eEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI--TITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~--Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
+|+++|.+|+|||||+++|+... .... ..+.+ +.......+......+++|||||+..|.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 63 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK--FNEK----------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC----------------cCCccceeEEEEEEEECCEEEEEEEEECCchHHHH
Confidence 79999999999999999997221 1100 00111 1111112222233578999999998888
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
......++.+|++++|+|.+++...+....| +.+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 64 ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888888999999999999886544333322 22222 2689999999999763
No 212
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.57 E-value=7.4e-14 Score=141.53 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|..|+|||||+++++. +.... +....+.+......+.+.+ ..+.||||||+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD--NTFSG----------------SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCCC----------------CcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 457999999999999999999962 11100 0001111122222333333 578899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.|......+++.+|++++|+|+++....+.. .++..+.. ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9988889999999999999999875443332 23333333 2589999999999753
No 213
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=3.3e-14 Score=140.21 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=75.3
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCCcc------
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD------ 167 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~d------ 167 (777)
++|++|+|||||+++|. +.... .....+.|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~---~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALT---NAKPK---------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHh---cCCcc---------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 58999999999999996 21101 1112445666666666777 88999999999843
Q ss_pred -hHHHHHHHHHhcCeEEEEEeCCCCC------chHH-HHHHHHHH----------HcCCCEEEEEEccCCCCc
Q 004038 168 -FTLEVERALRVLDGAICLFDSVAGV------EPQS-ETVWRQAD----------KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 -f~~~~~~~l~~aD~~ilVvda~~g~------~~~~-~~~~~~~~----------~~~~p~iiviNKiD~~~~ 222 (777)
+.......++.+|++++|+|+.+.. .... ..+...+. ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 2334566788899999999999863 1111 12222222 147999999999998643
No 214
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.56 E-value=5.4e-14 Score=136.14 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (777)
+|+++|.+|+|||||+++|+... . ... +.+ .+.......+... ...+++|||||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~--~~~---------~~~------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--F--VEE---------YDP------TIEDSYRKTIVVDGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--C--CcC---------cCC------ChhHeEEEEEEECCEEEEEEEEECCChHHHH
Confidence 58999999999999999997221 0 000 000 0111111222333 4678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
......++.+|++++|+|..+..... ....+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 88899999999999999998753322 2233333322 4799999999999864
No 215
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=6.2e-14 Score=139.31 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
++|+++|++|+|||||+++++... .. +...+ .+.......+.+. ++.+.+|||||+.+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~--~~~~~---------------t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FV--ESYYP---------------TIENTFSKIIRYKGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--Cc--cccCc---------------chhhhEEEEEEECCEEEEEEEEECCChHhh
Confidence 689999999999999999997211 10 00000 0000001112222 356899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH----HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
......++..+|++++|+|.++....+... .++.+. ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 888888999999999999999865443332 233332 24689999999999753
No 216
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.56 E-value=6e-14 Score=142.04 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+|+|.+|+|||||+++++. +.... +..+.++.......+.+++ ..+++|||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~--~~f~~----------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLA--QEFPE----------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHc--CCCCc----------------ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 799999999999999999962 21110 0011111111111233444 578899999986542
Q ss_pred ----HH----HHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHH------HcCCCEEEEEEccCCCC
Q 004038 170 ----LE----VERALRVLDGAICLFDSVAGVEPQSETV-WRQAD------KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ----~~----~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~------~~~~p~iiviNKiD~~~ 221 (777)
.+ ...+++.+|++|+|+|+++....+.... ++.+. ..++|+++|.||+|+..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 22 3456789999999999998654443322 23332 24689999999999854
No 217
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=9.7e-14 Score=142.54 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
+...+|+++|+.|+|||||+++|+.. ... .+....+.+......+.++ ...++||||||.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~--~~~----------------~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRN--EFC----------------LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC--CCC----------------CCCCCceeEEEEEEEEEECCEEEEEEEEECCCc
Confidence 45679999999999999999999621 100 0011112222222233333 358999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRL 220 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~ 220 (777)
..|......+++.+|++|+|+|.++....+... ++..+.. .++|+++|.||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 999888889999999999999998765444333 3344443 379999999999974
No 218
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=6.7e-14 Score=138.10 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|++|+|||||++++.. +..... .. .+..+ .......+....+.+++|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~--~~~~~~---~~-~t~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAN--DAFPEE---YV-PTVFD-----------HYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCCC---CC-Cceee-----------eeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 799999999999999999962 211000 00 00000 00011122223356889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHH--HcCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET--VWRQAD--KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~--~~~~p~iiviNKiD~~~~ 222 (777)
....++.+|++|+|+|..+.-..+... +...+. ..++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 777889999999999999764433331 223333 358999999999998643
No 219
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.55 E-value=1.1e-13 Score=135.06 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|.+|+|||||+++++ .+..... .. .+..+ .......+......++||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~--~~~~~~~--~~--~t~~~-----------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFV--SGTFIEK--YD--PTIED-----------FYRKEIEVDSSPSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH--cCCCCCC--CC--Cchhh-----------eEEEEEEECCEEEEEEEEECCCcccccc
Confidence 379999999999999999997 2322110 00 00000 0011111111234688999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRL 220 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~ 220 (777)
....+++.+|++|+|+|.++...-+. ...+..+.+ .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88889999999999999998543222 223333332 479999999999975
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=6e-14 Score=159.13 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=91.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH-
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~- 169 (777)
..||++|.||+|||||+|+| ||.....|++ +|+|+....+.+.++++.+.++|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~VgNw---------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQKVGNW---------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCceecCC---------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 46999999999999999999 6877777663 7899999999999999999999999986542
Q ss_pred ----HH-HHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 170 ----LE-VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 170 ----~~-~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
+. +.+++. ..|++|-|+||+. ......+.-++.+.|+|+++++|++|..
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 12 333443 4699999999987 4556666778889999999999999964
No 221
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=8.4e-14 Score=156.03 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe-EEEEEeCCCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDTPG~~d 167 (777)
..+.|+++|.+|+|||||+|+|. +..... ....+.|++.....+.+.+. .+.+|||||+..
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt---~~~~~v---------------~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRIT---EARVYA---------------ADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCceee---------------ccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 34789999999999999999995 321111 11234555555556666554 889999999843
Q ss_pred h--------HHHHHHHHHhcCeEEEEEeCCCCCchHHH----HHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f--------~~~~~~~l~~aD~~ilVvda~~g~~~~~~----~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. ...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+..
T Consensus 258 ~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 258 HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 2 12244557889999999999987544433 334444445799999999999853
No 222
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.55 E-value=1.5e-13 Score=141.17 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++++ .+.... . ..|+........+....+.+|||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~--~~~f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYM--ERRFKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCCCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 68999999999999999997 221100 0 01222222333445678999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
...+++.+|++|+|+|.++........ .|..+.+ .++|+|+|.||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 888999999999999999864433332 3333332 3689999999999865
No 223
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.55 E-value=1.2e-13 Score=138.79 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+. +..... .. .+..+ .. .....+......+.||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~---~~-~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVET---YD-PTIED----------SY-RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCcc---CC-CchHh----------hE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 489999999999999999972 211100 00 00000 00 001111112246889999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH------cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~------~~~p~iiviNKiD~~~ 221 (777)
...+++.+|++|+|+|.++...... ..++..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 8899999999999999987544333 233333332 3689999999999853
No 224
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.55 E-value=1.4e-13 Score=141.21 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec---CeEEEEEeCCCCcch
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDF 168 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDTPG~~df 168 (777)
+|+++|.+|+|||||+++|... ... .+..+.++.+.....+.+. ...++||||||+..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~--~~~----------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKE--GFG----------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCC----------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999621 100 0001112222222223332 368899999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc------CCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY------GVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~------~~p~iiviNKiD~~~ 221 (777)
.......++.+|++|+|+|+++........ ++..+.+. +.|+++|.||+|+..
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 888888999999999999999754333322 33333332 357889999999853
No 225
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.55 E-value=1.5e-13 Score=135.58 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (777)
+|+++|..|+|||||+++++. +... .+....+........+... ...+++|||||..+|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~--~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK--DVFD----------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 589999999999999999972 2110 0001111111111222222 3579999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc----CCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY----GVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~iiviNKiD~~~ 221 (777)
......++.+|++++|+|+.+....... .++..+.+. ..|+++|.||+|+..
T Consensus 64 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 64 CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 8889999999999999999874333222 333333332 255889999999753
No 226
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.54 E-value=7.1e-14 Score=138.25 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEee-eEEEEEecC--eEEEEEeCCCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITS-AATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~--~~i~liDTPG~~d 167 (777)
.+|+++|..|+|||||+++++ .+..... +. .|+.. ....+..++ ..++||||||..+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~--~~~f~~~-----------~~-------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFI--SHSFPDY-----------HD-------PTIEDAYKQQARIDNEPALLDILDTAGQAE 62 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHH--hCCCCCC-----------cC-------CcccceEEEEEEECCEEEEEEEEeCCCchh
Confidence 479999999999999999997 2221100 00 01100 001122233 5789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHH----HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|.++....+...- +..+. ..++|+++|.||+|+..
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 99888999999999999999998766554432 22222 24789999999999753
No 227
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.54 E-value=2.4e-13 Score=134.87 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeE-EEEEecC--eEEEEEeCCCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~-~~~~~~~--~~i~liDTPG~~d 167 (777)
.+|+++|..|+|||||+.++.+ +.... ++. + |+.... ..+..++ ..+++|||||+.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~-----------~~~-----p--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPS-----------EYV-----P--TVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CCC-----C--ceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 4799999999999999999972 21100 000 0 111111 1222333 6788999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHH-HHHHH--cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|.++....+.. ..| ..++. .++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 987777789999999999999986544433 223 33333 3689999999999754
No 228
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=1.1e-13 Score=142.53 Aligned_cols=117 Identities=26% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|..|+|||||+++++ .+..... .....|.++.............+.+|||||+.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~--~~~f~~~--------------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHL--TGEFEKK--------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHh--hCCCCCc--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 445699999999999999999986 2211110 011122222222222222346899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH--cCCCEEEEEEccCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRL 220 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~iiviNKiD~~ 220 (777)
|......+++.+|++|+|+|.++....+...-| ..+.+ .++|+++|.||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 988788889999999999999987554444333 33322 478999999999974
No 229
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.54 E-value=2.4e-13 Score=136.56 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=80.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
+...+|+++|..++|||||+.++.. +... .+....++.......+..+ ...+++|||||+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~--~~~~----------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~ 65 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQD--GSTE----------------SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCC----------------CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 4567999999999999999999962 2110 0000111222222223333 367899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH--cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|.++....+... .+..+.+ .++|+++|.||+|+..
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 999988888999999999999999765544433 3344433 3789999999999853
No 230
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=8.3e-14 Score=136.36 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=72.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-hHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d-f~~ 170 (777)
+|+++|.+|+|||||+++++. +... +. +.+... +.......+......+.+|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~--~~---------~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFI--GE---------YDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Cccc--cc---------cCCChH----HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 489999999999999999972 2110 00 000000 11111122223345688999999985 456
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHH-----HcCCCEEEEEEccCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD-----KYGVPRICFVNKMDRL 220 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~-----~~~~p~iiviNKiD~~ 220 (777)
.....++.+|++|+|+|+++....+.... +..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 67888999999999999998654433322 22232 2379999999999974
No 231
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.54 E-value=2.4e-13 Score=132.71 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-ecCeEEEEEeCCCCcchHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDTPG~~df~~ 170 (777)
+|+++|.+|+|||||+++|........ +.. ....|.........+. .....+.+|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~--~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP--KNY------------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--ccC------------CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 799999999999999999962211110 000 0011112111112221 2346899999999998888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
.+...++.+|++++|+|.++....... .+++.+... ++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888899999999999999875433222 233444433 689999999999853
No 232
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.54 E-value=7.4e-14 Score=138.57 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=86.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.++..+|+++|..|||||||+++|. .+.... ..-|+......+.+++..+++||.+|..
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~--~~~~~~-------------------~~pT~g~~~~~i~~~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLK--NGEISE-------------------TIPTIGFNIEEIKYKGYSLTIWDLGGQE 69 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHH--SSSEEE-------------------EEEESSEEEEEEEETTEEEEEEEESSSG
T ss_pred cCcEEEEEEECCCccchHHHHHHhh--hccccc-------------------cCcccccccceeeeCcEEEEEEeccccc
Confidence 3667899999999999999999995 222111 0114444556677789999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHHH----HcCCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~~----~~~~p~iiviNKiD~~~~ 222 (777)
.+...+..++..+|++|+|||+++.-. ....+.+..+. ..++|+++++||.|+.++
T Consensus 70 ~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 70 SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 888888899999999999999997432 23333333332 247999999999998764
No 233
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.53 E-value=1.7e-13 Score=137.88 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+. +.... +. + ....|.+.......+.-....+++|||||...|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~--~~~~~-~~---------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVH--HRFLV-GP---------Y---QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCcCC-cC---------c---ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 799999999999999999972 21100 00 0 001111121111222212346779999999888777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
....++.+|++|+|+|.++....+. ..+++.++.. ++|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 7778889999999999987543332 2334444433 689999999999754
No 234
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.53 E-value=2.9e-14 Score=125.97 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.6
Q ss_pred eEEEEEEEeecC-CCceEEEEEEEeeeecCCCeEEeCC---------CCceeecceeEEeccCceeecceeecCCEEEEc
Q 004038 390 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (777)
Q Consensus 390 ~~~~V~K~~~~~-~~G~l~~~RV~sG~l~~g~~v~~~~---------~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (777)
++++|||+.+++ +.|+++|+|||||+|++||.|++.. ..+++++++|+.++|.++.+++++.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8899999999999999999998765 334588999999999999999999999999999
Q ss_pred CCCcccccceec
Q 004038 460 GLKDTITGETLC 471 (777)
Q Consensus 460 gl~~~~~GdtL~ 471 (777)
|++++.+|+|-+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998753
No 235
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=1.2e-13 Score=135.71 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++|+... ... .. . .+. ................+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~--~~~-~~-~--~~~-----------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK--FPT-EY-V--PTV-----------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC-CC-C--Cce-----------eeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 78999999999999999997221 100 00 0 000 0001111112223467999999999987666
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHHc--CCCEEEEEEccCCCCcc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGAN 223 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iiviNKiD~~~~~ 223 (777)
....++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+...+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 6667789999999999987443322 2233333333 59999999999987543
No 236
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.52 E-value=2.3e-13 Score=136.80 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
++|+++|..|+|||||+++++ .+.... ...+ +. +... .....+......++||||||..+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~--~~~~~~--~~~~--t~----------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFT--RGYFPQ--VYEP--TV----------FENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHh--cCCCCC--ccCC--cc----------eeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 479999999999999999996 221110 0000 00 0000 01111222336789999999998877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHH--cCCCEEEEEEccCCCCc
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSET--VWRQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
....+++.+|++|+|+|.++....+... ++..+.. .++|+++|.||+|+...
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 6677889999999999999865444332 3344433 37899999999998654
No 237
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=2.6e-13 Score=136.11 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++++ .+.... . .....|.+.......+......+.+|||||..+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~--~~~~~~-----------~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT--EDEFSE-----------S---TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh--cCCCCC-----------C---CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 79999999999999999996 221100 0 0011122222222222223467889999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
....++.+|++|+|+|.++........ ++..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 999999999999999998754433322 2233333 3578999999999763
No 238
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.52 E-value=1e-13 Score=161.70 Aligned_cols=105 Identities=23% Similarity=0.264 Sum_probs=79.3
Q ss_pred eCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH-----
Q 004038 97 AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE----- 171 (777)
Q Consensus 97 G~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~----- 171 (777)
|.+|+|||||+|+|. |..... ...+|+|++.....+.+++..+++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~v---------------~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQTV---------------GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCee---------------cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 889999999999994 332211 124688998888888888999999999999887432
Q ss_pred HHH-HH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 172 VER-AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~-~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.+ ++ ..+|++++|+|+++. ........++.+.++|+++|+||+|+.+
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 222 22 368999999999873 2344555566778999999999999753
No 239
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.52 E-value=5.9e-14 Score=124.30 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=70.6
Q ss_pred eEEEEEEEeecCCC-ceEEEEEEEeeeecCCCeEEeCCCC---------ceeecceeEEeccCceeecceeecCCEEEEc
Q 004038 390 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALA 459 (777)
Q Consensus 390 ~~~~V~K~~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---------~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (777)
++++|||+.++|+. |+++|+|||||+|++||.|++...+ ..++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 6799999999999999999864221 3579999999999999999999999999999
Q ss_pred CCCccccccee
Q 004038 460 GLKDTITGETL 470 (777)
Q Consensus 460 gl~~~~~GdtL 470 (777)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99987665443
No 240
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.51 E-value=3.7e-13 Score=140.77 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++++ .+.... .. . .+..| .......+....+.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~--~~~f~~--~y-~-pTi~d-----------~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFL--GGRFEE--QY-T-PTIED-----------FHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHH--cCCCCC--CC-C-CChhH-----------hEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 69999999999999999997 222110 00 0 00001 01111122222367899999999999877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH------------cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK------------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~------------~~~p~iiviNKiD~~~ 221 (777)
...++..+|++|+|+|.++...-+.. .+++.+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 77788999999999999975433222 23333322 3689999999999853
No 241
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=2.7e-13 Score=133.65 Aligned_cols=117 Identities=12% Similarity=0.003 Sum_probs=76.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|..|+|||||+++++ .+... ... +.+ .-+...... .+.+++ ..+++|||+|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~--~~~f~-~~~---------~~~---T~~~~~~~~--~~~~~~~~~~l~~~d~~g~ 64 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFL--GRSFS-LNA---------YSP---TIKPRYAVN--TVEVYGQEKYLILREVGED 64 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHh--CCCCC-ccc---------CCC---ccCcceEEE--EEEECCeEEEEEEEecCCc
Confidence 456799999999999999999996 22111 000 000 001111111 222333 56889999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHH-HcCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~-~~~~p~iiviNKiD~~~ 221 (777)
..|......+++.+|++|+|+|+++....... ++++.+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 65 EVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 98887778888999999999999875322221 2333332 23799999999999853
No 242
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.51 E-value=3.7e-13 Score=134.68 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeee-EEEEEe---cCeEEEEEeCCCCc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYW---NKHRINIIDTPGHV 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~-~~~~~~---~~~~i~liDTPG~~ 166 (777)
.+|+++|..|+|||||+++|+. +.... ++ . .|+... ...+.. ....+.+|||||+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~--~~~~~-----------~~-----~--~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ--GKFPE-----------EY-----V--PTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh--CcCCC-----------CC-----C--CeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 3799999999999999999972 11100 00 0 011111 011111 23578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HH-HHHHH--cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++|+|+|.++....+... .| ..... .++|+++|.||.|+..
T Consensus 61 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred hHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 98887777889999999999999755443332 23 22222 3789999999999754
No 243
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=4.6e-13 Score=136.39 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=87.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+...||.++|.+|+|||||+|+|+ .|.......+..|+... ......+++..++||||||+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF--~~~~~~v~~vg~~t~~~---------------~~~~~~~~~~~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALF--QGEVKEVSKVGVGTDIT---------------TRLRLSYDGENLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHH--hccCceeeecccCCCch---------------hhHHhhccccceEEecCCCcc
Confidence 4667899999999999999999998 33332222221111100 000122356789999999998
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 167 D-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 167 d-------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
| +...+...+...|++++++|+.+.....++++++..... +.+.+++||.+|+..
T Consensus 99 dg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred cchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 7 667788899999999999999999998899988876544 578999999999864
No 244
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=3.2e-13 Score=138.17 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---cCeEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDTPG~~ 166 (777)
..+|+++|..|+|||||+++|+. +..... ..+.+..+.....+.+ ....+++|||||+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~--~~~~~~----------------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE--GRFAEV----------------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCC----------------CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 35899999999999999999972 211110 0011111111112222 23578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.|......+++.+|++|+|+|.++....... ..+..+.+ ...|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred hHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 9988888899999999999999875332222 22232322 3467788999999754
No 245
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=2.7e-13 Score=137.35 Aligned_cols=109 Identities=27% Similarity=0.289 Sum_probs=75.8
Q ss_pred EeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHH
Q 004038 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (777)
Q Consensus 96 iG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 175 (777)
+|..|+|||||+++++ .+.... .+ ...-|++.......+..+...++||||||+.+|...+..+
T Consensus 1 vG~~~vGKTsLi~r~~--~~~f~~-----------~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHL--TGEFEK-----------KY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHh--cCCCCC-----------CC---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 6999999999999996 221110 00 0011222222222222245689999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCchHHHHHH-HHHHH--cCCCEEEEEEccCCC
Q 004038 176 LRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRL 220 (777)
Q Consensus 176 l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~iiviNKiD~~ 220 (777)
++.+|++|+|+|.++....+....| ..+.+ .++|+++|.||+|+.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999987665544434 33444 478999999999974
No 246
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.50 E-value=6e-13 Score=131.90 Aligned_cols=114 Identities=17% Similarity=0.103 Sum_probs=75.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|..|+|||||+.+++. +.... ... .+..+ .. .....+......+++|||||..+|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~--~~~--~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPG--EYI--PTVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC--cCC--Cccee----------ee-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 4799999999999999999972 21110 000 00000 00 00111222336788999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-HHH-HHHHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++|+|+|.++....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888889999999999999986544443 223 33332 3689999999999854
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.50 E-value=1.9e-13 Score=125.97 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=81.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc----
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 167 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d---- 167 (777)
.|+|+|.+|+|||||+|+|+ +..... .....+.|.......+.+.+..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~---~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT---GKKLAK--------------VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH---TSTSSE--------------ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHh---cccccc--------------ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchh
Confidence 58999999999999999997 221111 111234555555556677888999999999864
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEc
Q 004038 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (777)
Q Consensus 168 -----f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNK 216 (777)
....+...+..+|++++|+|+.+........+++.++ .+.|+++|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2334666678899999999988866667778888886 88999999998
No 248
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.49 E-value=6.8e-13 Score=129.08 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=75.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch----
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---- 168 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df---- 168 (777)
|+++|++|+|||||++.|..... ... .+...+.|..... +.+. ..+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~---------------~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LAR---------------TSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eee---------------ecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCH
Confidence 79999999999999999962111 111 1111233333222 2222 38999999998653
Q ss_pred ------HHHHHHHHH---hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 169 ------TLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ------~~~~~~~l~---~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
...+..++. .++++++|+|...........+++.+...+.|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222233333 45789999999988777777888888888999999999999864
No 249
>PLN03108 Rab family protein; Provisional
Probab=99.49 E-value=7.1e-13 Score=135.55 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+|+|..|+|||||+++|+.. ..... + ....|.+.......+......+++|||||+..
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~--~~~~~-----------~---~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~ 67 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV-----------H---DLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC--CCCCC-----------C---CCCccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 34579999999999999999999621 11000 0 00011122122222222235688999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|.......++.+|++|+|+|+++....+.. ..+..+.. .++|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 988888999999999999999875443333 22332322 3689999999999854
No 250
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.49 E-value=4.8e-13 Score=133.61 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..|+|||||+++++. +.... ++ ...-|.........+.-....+.+|||+|...|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~--~~f~~-----------~~---~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVE--GEFDE-----------DY---IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCC-----------CC---CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 689999999999999999972 21100 00 001122221112222222367899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
...+++.+|++++|+|.++....+.. ..+..+++ ...| ++|.||+|+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 88899999999999999876544333 23344433 2355 68899999853
No 251
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.49 E-value=1.3e-12 Score=127.73 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|..|+|||||+++++ .+.... +..+.+........+...+ ..+.+|||||...|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~--~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT--DNEFHS----------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh--cCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH
Confidence 68999999999999999996 221110 0001111111122233333 578899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++++|+|.++.-..+... .+..+.. .++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888999999999999998753332222 2232222 3689999999999754
No 252
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.48 E-value=4.8e-13 Score=132.00 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=72.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcchHH
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTL 170 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df~~ 170 (777)
|+|+|..|+|||||+++++. +.... .+. ..+ .......+..+ ...+.+|||||..+|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~--------~~~--------~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPE--------DYV--------PTV-FENYSADVEVDGKPVELGLWDTAGQEDYDR 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCC--------CCC--------CcE-EeeeeEEEEECCEEEEEEEEECCCCcccch
Confidence 58999999999999999972 21100 000 000 00111112222 34689999999999887
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.....++.+|++|+|+|.++.-.-+.. .++..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 777788999999999999875333322 23333333 3799999999999864
No 253
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.48 E-value=5e-13 Score=132.01 Aligned_cols=114 Identities=15% Similarity=0.020 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
++|+++|..|+|||||+++++. +.... .+.+ ..+... .....+......+.+|||||+.+|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~--~~~~~-----------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK--DQFPE-----------VYVP---TVFENY-VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCCC---ccccce-EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 5899999999999999999972 11100 0000 000000 01111222335689999999988877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-H-HHHHHHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-T-VWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~-~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++++|+|..+....... . ++..+.+ .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 666778899999999999864322222 1 2233333 3799999999999864
No 254
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.48 E-value=6.9e-13 Score=131.12 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df~ 169 (777)
+|+++|..|+|||||+.+++. +.... .+ ..+..+.....+..+ ...+.+|||||+..|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 62 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTT--NGYPT-----------EY------VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCC-----------CC------CCceeeeeeEEEEECCEEEEEEEEECCCChhhc
Confidence 689999999999999999862 11100 00 001111111122222 3578899999998887
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++|+|+|.++.-..+. ..++..+.. .++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 777778899999999999997644333 234444443 3789999999999854
No 255
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.47 E-value=8.6e-13 Score=131.00 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|..++|||||+.+++ .|.... ++.+ .-|.+.. ....+.-....+++|||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~--~~~f~~-----------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT--SNKFPT-----------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh--cCCCCC-----------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 479999999999999999997 222110 0000 0011111 1111222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++|+|+|.++...-+.. .++..+++ .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999976555443 23444443 3789999999999854
No 256
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.47 E-value=1e-12 Score=132.32 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeee---EEEEEecCeEEEEEeCCCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA---ATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~---~~~~~~~~~~i~liDTPG~~d 167 (777)
.+|+++|..|+|||||+.+++. |.... .+ ..|+... ...+......+++|||||+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~--~~f~~-----------~~-------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTT--NAFPK-----------EY-------IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHh--CCCCc-----------CC-------CCceEeeeEEEEEECCEEEEEEEEECCCchh
Confidence 5899999999999999999972 21110 00 0111111 111222346789999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HH-HHHHH--cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|.++...-+... .| ..+.. .++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9988888899999999999999865544432 23 22332 4799999999999854
No 257
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=126.99 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--cCeEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDTPG 164 (777)
-+..-.|.++|..|+|||.|+-++. . |.+.++....|-++....+++. +..++++|||+|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~--~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG 67 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFK--D----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG 67 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhc--c----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc
Confidence 3667899999999999999999984 1 2222222333334444444444 445799999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHHc---CCCEEEEEEccCCCCc
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~iiviNKiD~~~~ 222 (777)
+..|...+..++|.|+++|+|.|.++...-.....| ..++++ ++|.++|.||+|+...
T Consensus 68 QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 68 QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 999999999999999999999999985554444433 344443 7899999999998653
No 258
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=5.3e-13 Score=126.26 Aligned_cols=109 Identities=24% Similarity=0.224 Sum_probs=76.8
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeE-eeeEEEEE--ecCeEEEEEeCCCCcchHHH
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTY--WNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti-~~~~~~~~--~~~~~i~liDTPG~~df~~~ 171 (777)
++|++|+|||||+++|...... . .....|. ......+. ..+..+++|||||+.++...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~--~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV--P-----------------EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC--C-----------------cccccchhheeeEEEEECCEEEEEEEEecCChHHHHhH
Confidence 5899999999999999622210 0 0011111 11111122 23578999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHH-----HHHHHcCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~iiviNKiD~~~~ 222 (777)
....++.+|++++|+|+..+........+ ......++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 88899999999999999987666555443 3344568999999999998654
No 259
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.45 E-value=1.8e-12 Score=133.63 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=70.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|.+|+|||||+++++ .+..... .+ +...+.........+......+++|||||+.++..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~--~~~~~~~----------~~---~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~- 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDH----------AY---DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE- 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCcCcc----------Cc---CCCccccceEEEEEECCEEEEEEEEeCCCcchHHH-
Confidence 69999999999999999996 2221100 00 00000011111122222457799999999984322
Q ss_pred HHHHHH-hcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 172 VERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~-~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
...++ .+|++++|+|+++...... ..++..+.. .++|+++|.||+|+..
T Consensus 66 -~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 -DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred -hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 33456 8999999999998643332 233344433 3689999999999754
No 260
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43 E-value=3.8e-12 Score=127.13 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
...+|+++|..++|||||+.+++. +.... ++.+ .-+.... ....+.-....+.+|||+|...|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~--~~f~~-----------~~~p---T~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAK--DCFPE-----------NYVP---TVFENYT-ASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh--CCCCC-----------ccCC---ceeeeeE-EEEEECCEEEEEEEEECCCchhh
Confidence 345899999999999999999972 21110 0000 0000110 11112223457999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH-H-HHHHHHH--cCCCEEEEEEccCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-T-VWRQADK--YGVPRICFVNKMDRL 220 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~-~~~~~~~--~~~p~iiviNKiD~~ 220 (777)
......+++.+|++|+|+|.++...-+.. . ++..+++ .+.|+++|.||+|+.
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 88888889999999999999986554443 2 3334433 268999999999974
No 261
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.8e-12 Score=122.65 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=85.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
-+.-.|+++|..++|||||+++++|..-...-.. .-|+..-+....+.-...++.||||+|++.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqA----------------TIGiDFlskt~~l~d~~vrLQlWDTAGQER 83 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQER 83 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccc----------------eeeeEEEEEEEEEcCcEEEEEEEecccHHH
Confidence 3446899999999999999999986543221100 012333333333333457899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHHHHcC----CCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQADKYG----VPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~~~~~----~p~iiviNKiD~~~~ 222 (777)
|...+..++|.+.++|+|.|.++.-. .++...++-++..+ +-+++|.||.|+...
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 99999999999999999999996543 56666667776652 345678899999764
No 262
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=3.2e-12 Score=127.26 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=75.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|..|+|||||++++.. +.... ++.+ .-+.... ....+.-....+++|||||+..|..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~~-----------~~~~---t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYPE-----------TYVP---TVFENYT-ASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCCC-----------CcCC---ceEEEEE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 3799999999999999999962 21100 0000 0000000 0111222346788999999999887
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHH-HH-HHHHHHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQS-ET-VWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~-~~-~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++|+|+|.++...-+. .. ++..+++ .+.|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 77888999999999999997655444 22 3334443 3789999999999853
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.42 E-value=1.3e-12 Score=122.92 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC----c
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~----~ 166 (777)
++|.+||.+++|||||+++|. |.... ...|.. +.+ .=++|||||- .
T Consensus 2 krimliG~~g~GKTTL~q~L~---~~~~~-------------------~~KTq~-----i~~---~~~~IDTPGEyiE~~ 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN---GEEIR-------------------YKKTQA-----IEY---YDNTIDTPGEYIENP 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc---CCCCC-------------------cCccce-----eEe---cccEEECChhheeCH
Confidence 579999999999999999994 21100 001111 112 2246999993 3
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.|..........||.+++|.|+++.....--. .+...+.|+|-||||+|+.
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCc
Confidence 46666777778999999999999864432222 2334568999999999998
No 264
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.41 E-value=2.1e-12 Score=131.37 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE----ecCeEEEEEeCCCCc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----WNKHRINIIDTPGHV 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~----~~~~~i~liDTPG~~ 166 (777)
++|+++|++|+|||||+++|.. +.... +. .++......+. ..+..+.+||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~--~~~~~--------t~-----------~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTT--GKYRS--------TV-----------TSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhc--CCCCC--------cc-----------CcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 4799999999999999999962 11100 00 01111111111 246789999999999
Q ss_pred chHHHHHHHHHhc-CeEEEEEeCCCCCc--hHHHHHHH----HHH--HcCCCEEEEEEccCCCCcc
Q 004038 167 DFTLEVERALRVL-DGAICLFDSVAGVE--PQSETVWR----QAD--KYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 167 df~~~~~~~l~~a-D~~ilVvda~~g~~--~~~~~~~~----~~~--~~~~p~iiviNKiD~~~~~ 223 (777)
+|......+++.+ +++|+|+|+.+... ....+.+. ... ..++|+++++||+|+..+.
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 9999999999999 99999999998631 11222221 111 1489999999999987654
No 265
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=5.6e-12 Score=130.27 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=76.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
...|+++|..++|||||+.+++. +.... ++.+ .-+..... ...+.-....+.||||+|...|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~--~~F~~-----------~y~p---Ti~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAK--DCYPE-----------TYVP---TVFENYTA-GLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhc--CCCCC-----------CcCC---ceeeeeEE-EEEECCEEEEEEEEeCCCchhhH
Confidence 45899999999999999999962 21110 0000 00101100 11122234679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-H-HHHHHHHH--cCCCEEEEEEccCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-E-TVWRQADK--YGVPRICFVNKMDRL 220 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-~-~~~~~~~~--~~~p~iiviNKiD~~ 220 (777)
.....+++.+|++|+|+|.++....+. . .++..+.+ .++|+++|.||+|+.
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 888889999999999999998655543 2 23344443 368999999999975
No 266
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.4e-12 Score=125.81 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----cCeEEEEEeCCCC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGH 165 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liDTPG~ 165 (777)
.-.|+++|..++|||||+-++. .|..... .|. ||..++..-.+ ...++-+|||.|+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv--k~~F~e~--------------~e~----TIGaaF~tktv~~~~~~ikfeIWDTAGQ 64 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV--KDQFHEN--------------IEP----TIGAAFLTKTVTVDDNTIKFEIWDTAGQ 64 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh--hCccccc--------------ccc----ccccEEEEEEEEeCCcEEEEEEEEcCCc
Confidence 3579999999999999999986 2211110 111 33333332222 3467889999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHHcCCC---EEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~~~~p---~iiviNKiD~~~ 221 (777)
..|......++|.|++||+|.|.++.-.-+....| ..+.+..-| +.+|.||+|+..
T Consensus 65 ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 65 ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 99999999999999999999999986555544433 445444334 345889999875
No 267
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=3.1e-12 Score=132.12 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=85.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeE-EEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~-i~liDTPG~ 165 (777)
.+-+-+|++||-||||||||+++|. .+..+++... =+|+........++++. +++-|.||.
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als---~AKpkVa~Ya---------------FTTL~P~iG~v~yddf~q~tVADiPGi 254 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALS---RAKPKVAHYA---------------FTTLRPHIGTVNYDDFSQITVADIPGI 254 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhh---ccCCcccccc---------------eeeeccccceeeccccceeEeccCccc
Confidence 3456789999999999999999994 5555555432 14666666777776665 999999997
Q ss_pred cc-------hHHHHHHHHHhcCeEEEEEeCCCCC----chHHHHHHHHHHHc-----CCCEEEEEEccCCCC
Q 004038 166 VD-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~d-------f~~~~~~~l~~aD~~ilVvda~~g~----~~~~~~~~~~~~~~-----~~p~iiviNKiD~~~ 221 (777)
+. ...+..+-+..|+..++|+|.+.+. ..+...++..+..+ ..|.++|+||+|.+.
T Consensus 255 I~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred cccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 64 3455788889999999999999772 22333344444433 678999999999863
No 268
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.38 E-value=1.3e-11 Score=126.67 Aligned_cols=118 Identities=22% Similarity=0.175 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|+.|+|||||+++++ .|...... ....|..+.........+...+++|||||+.+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~--~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHL--TGEFEKKY--------------IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHH--hCCCCCCC--------------CCccceEEEEEEEEECCeEEEEEEEECCCchh
Confidence 344689999999999999998876 23221100 00112222222222223457899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH--HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD--KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~--~~~~p~iiviNKiD~~~ 221 (777)
|.......++.+|++++|+|.++....+....| ..+. ..++|++++.||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 887777888899999999999987655444333 2222 24789999999999753
No 269
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.7e-11 Score=120.58 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=86.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+.+....|+++|.+|+|||+++.++...+-....+ ..-|+......+.+.-....+.+|||.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~----------------sTiGIDFk~kti~l~g~~i~lQiWDtaGQ 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI----------------STIGIDFKIKTIELDGKKIKLQIWDTAGQ 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCcc----------------ceEEEEEEEEEEEeCCeEEEEEEEEcccc
Confidence 44778899999999999999999996222111110 01233333333344434567899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
..|...+..+++.|+++++|+|.+....-....-| +..++ .++|.++|.||+|...
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999999999976554443333 44443 3789999999999865
No 270
>COG2262 HflX GTPases [General function prediction only]
Probab=99.38 E-value=9.4e-12 Score=133.66 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=83.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPG 164 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG 164 (777)
....++.|+++|.+|||||||+|+|. +..... +...-.|.+.....+.+. +..+.|-||-|
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~~---------------~d~LFATLdpttR~~~l~~g~~vlLtDTVG 249 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALT---GADVYV---------------ADQLFATLDPTTRRIELGDGRKVLLTDTVG 249 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHh---ccCeec---------------cccccccccCceeEEEeCCCceEEEecCcc
Confidence 34678999999999999999999994 322111 111223555555666665 68999999999
Q ss_pred Ccch--------HHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 165 HVDF--------TLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~df--------~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
+++- ...+......+|.++.|||++++. ..+.....+.+.+ ..+|+|+|.||+|+...
T Consensus 250 FI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 250 FIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred CcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 9751 233555667899999999999873 2333334444444 46899999999998743
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=8.7e-12 Score=126.09 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH-
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~- 169 (777)
+||+++|++|+|||||+|+|+....... ....++.|.........+.+..+++|||||+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES----------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc----------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 5899999999999999999972211100 01134667777777788899999999999998752
Q ss_pred ------HHHHHHH----HhcCeEEEEEeCCCCCchHHHHHHHHHHHc-C----CCEEEEEEccCCCCc
Q 004038 170 ------LEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ------~~~~~~l----~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~iiviNKiD~~~~ 222 (777)
.++.+.+ ...|++|+|+|+.. +...+...++.+++. | .++++++|+.|....
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 2233332 34699999999988 888888888877664 3 578899999998764
No 272
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.37 E-value=1.1e-11 Score=127.47 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.+|+++|..|+|||||+.++.. +.... ++.+ .-+.... ....+......++||||+|...|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~-----------~y~p---Ti~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPG-----------SYVP---TVFENYT-ASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------ccCC---ccccceE-EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4799999999999999999962 21100 0000 0000110 0111222345788999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHH-HHH--cCCCEEEEEEccCCCC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~-~~~--~~~p~iiviNKiD~~~ 221 (777)
....+++.+|++|+|+|.++....+.. ..|.. +.. .++|+++|.||+|+..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 888899999999999999986544333 33432 222 4789999999999854
No 273
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.36 E-value=2.6e-11 Score=125.87 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=87.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc----
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 167 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d---- 167 (777)
+|+++|.+|+|||||+++|. |.....+. ..+.|.......+.+++..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~~---------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAA---------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCccccC---------------CCCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 58999999999999999995 43222211 133455555666778889999999999854
Q ss_pred ---hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC------CEE----------EEEEccCCCCcchHhHH
Q 004038 168 ---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------PRI----------CFVNKMDRLGANFFRTR 228 (777)
Q Consensus 168 ---f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~------p~i----------iviNKiD~~~~~~~~~~ 228 (777)
+..++...++.+|++++|+|+++... +...+.+.+...|+ |.+ -+.+++|+.+.+.+ .+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~-~v 141 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEK-TI 141 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHH-HH
Confidence 33456778999999999999986432 44455666665544 211 12346666666543 44
Q ss_pred HHHHHHhCCCceeE
Q 004038 229 DMIVTNLGAKPLVV 242 (777)
Q Consensus 229 ~~i~~~l~~~~~~~ 242 (777)
..+.+.++.+...+
T Consensus 142 ~~~l~~~~i~~~~v 155 (233)
T cd01896 142 KAILREYKIHNADV 155 (233)
T ss_pred HHHHHHhCeeeEEE
Confidence 55556666654433
No 274
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.35 E-value=8.3e-12 Score=121.73 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df~ 169 (777)
+|+++|..|+|||||+.+++ .+.... ...+. .+. ....+..++ ..+.+|||+|..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~--~~~f~~-----------~~~~~---~~~----~~~~i~~~~~~~~l~i~D~~g~~~-- 59 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYL--TGSYVQ-----------LESPE---GGR----FKKEVLVDGQSHLLLIRDEGGAPD-- 59 (158)
T ss_pred EEEEECCCCCcHHHHHHHHH--hCCCCC-----------CCCCC---ccc----eEEEEEECCEEEEEEEEECCCCCc--
Confidence 69999999999999999986 221110 00000 010 011223334 5689999999975
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRL 220 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~ 220 (777)
..+++.+|++++|+|.++...-+. ...+..+.. .++|+++|.||+|+.
T Consensus 60 ---~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 60 ---AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred ---hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 245678999999999998766555 334444443 357999999999864
No 275
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=127.75 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=86.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
..++|+|.|++|+|||||++++ +++...+... +=+|-....+.++.++.++++|||||.-|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~l---T~AkpEvA~Y---------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKL---TTAKPEVAPY---------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHH---hcCCCccCCC---------------CccccceeEeeeecCCceEEEecCCcccCC
Confidence 6899999999999999999999 4544333221 224666777888888899999999998652
Q ss_pred --------HHHHHHHHHh-cCeEEEEEeCCCCC----chHHHHHHHHHH-HcCCCEEEEEEccCCCCcc-hHhHHHHHH
Q 004038 169 --------TLEVERALRV-LDGAICLFDSVAGV----EPQSETVWRQAD-KYGVPRICFVNKMDRLGAN-FFRTRDMIV 232 (777)
Q Consensus 169 --------~~~~~~~l~~-aD~~ilVvda~~g~----~~~~~~~~~~~~-~~~~p~iiviNKiD~~~~~-~~~~~~~i~ 232 (777)
-.+...|++. .+.+++++|+++-. ..|. .+|+..+ ..+.|+++|+||+|....+ .++....+.
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHH
Confidence 2335556654 47889999999533 2333 2344443 3468999999999987533 444433333
No 276
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.34 E-value=1.6e-11 Score=124.31 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcchH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFT 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~df~ 169 (777)
.+|+++|.+|+|||||+|+|+ |.... ..|....+. ..+|.... .+.. ....+.+|||||+.+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~---g~~~~----~~~~~~~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALR---GVGHE----EEGAAPTGV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHh---ccCCC----CCCccccCc------cccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 579999999999999999996 21110 001111110 00111111 1111 12468999999987542
Q ss_pred H---HHHH--HHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 L---EVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~---~~~~--~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. +... .+..+|.+++|.| ..+......+++.+.+.+.|+++|+||+|+..
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 2 2222 2456788888754 45677778888888889999999999999853
No 277
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.33 E-value=1.8e-11 Score=122.74 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=71.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
.+|+++|..|+|||||++++. .|..... . . .+..+ .-...+.+. ...+++|||||+.+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~--~~~~~~~--~-~-~t~~~-------------~~~~~~~~~~~~~~l~i~Dt~g~~~~ 62 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT--LGEFPEE--Y-H-PTVFE-------------NYVTDCRVDGKPVQLALWDTAGQEEY 62 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH--hCCCCcc--c-C-Ccccc-------------eEEEEEEECCEEEEEEEEECCCChhc
Confidence 479999999999999999996 2211110 0 0 00000 001112222 245789999999877
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.......++.+|++++++|....-..+.. .++..+++ ..+|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 63 ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 65545567899999999999765433322 23344433 2699999999999753
No 278
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=2.5e-11 Score=122.61 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=48.4
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHH-HHHHH--cCCCEEEEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~iiviNKiD~~~ 221 (777)
...++||||+|..+. ....+++.+|++|+|+|.++...-... ..| ..++. .++|+++|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 468999999998753 233467899999999999986554433 223 44433 3689999999999864
No 279
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.33 E-value=3.7e-11 Score=112.67 Aligned_cols=113 Identities=24% Similarity=0.254 Sum_probs=85.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|.|+|..|+||||++++|+ |... ...+ -|......++.++++.+++||..|+..+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~---~~~~--------------~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLL---GEDT--------------DTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhc---CCCc--------------cccC----CccceeeEEEEecceEEEEEEcCCcchh
Confidence 35689999999999999999995 2211 0111 1445555677889999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHH----HHHcCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQ----ADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~----~~~~~~p~iiviNKiD~~~~ 222 (777)
..-+..++..+|+.|+|||+++....| +...+.. -+..|.|++++.||.|..++
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 999999999999999999998754322 2222322 23358999999999998753
No 280
>PRK09866 hypothetical protein; Provisional
Probab=99.32 E-value=2.8e-11 Score=136.89 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCcc-----hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcC--CCEEEEEEccCCCC
Q 004038 155 HRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (777)
Q Consensus 155 ~~i~liDTPG~~d-----f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~iiviNKiD~~~ 221 (777)
.++.|+||||... +...+..++..+|.+++|+|+..+....++.+++.+++.+ .|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 6899999999853 4456778999999999999999988888999999998887 49999999999853
No 281
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.32 E-value=4e-11 Score=116.74 Aligned_cols=114 Identities=23% Similarity=0.252 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|..++|||||++++.. +.... ++ ....|.........+.-....+.+||++|+..|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPE-----------NY---IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTS-----------SS---ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHh--hcccc-----------cc---cccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999962 21110 00 001122222222222223467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHHc---CCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
....++.+|++|+|+|.++.-.-..... +..+... +.|++++.||.|+..
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 8888999999999999987543333332 2333322 478899999999764
No 282
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.29 E-value=2.1e-11 Score=111.95 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
..+.++|--++|||||+|.+. +|...+ | -+-|+......++-....+.+||.||+..|..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia--~g~~~e-----------d-------miptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIA--RGQYLE-----------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred eeEEEEeeccCCcceEEEEEe--eccchh-----------h-------hcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 478899999999999999875 322111 1 11233344445555677899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCC--chHHHHHHHHH---HHcCCCEEEEEEccCCCCc
Q 004038 171 EVERALRVLDGAICLFDSVAGV--EPQSETVWRQA---DKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~--~~~~~~~~~~~---~~~~~p~iiviNKiD~~~~ 222 (777)
.+.++.+.+|+++++|||.+.- ...-.++-.++ .-.++|.++..||.|+.++
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999999732 22223333333 3358999999999999875
No 283
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.1e-11 Score=132.67 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=94.2
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
...+...+|+|+|++|+|||||+|+|... |..-+....|+|.+.-.+.++.+|+.+.|+||+|
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~-----------------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAG 325 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSRE-----------------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAG 325 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcC-----------------CceEeCCCCCcchhhheeEeecCCeEEEEEeccc
Confidence 34466789999999999999999999621 2233455789999999999999999999999999
Q ss_pred Ccc---------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 165 HVD---------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 165 ~~d---------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
..+ -+......+..+|.+++|+|+.++...++..+.+.+...+.-..+++||+
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 865 13346677889999999999999999998888888887776666666665
No 284
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.27 E-value=3e-11 Score=112.41 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=83.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhh--cceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQE--RGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~--~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
....|.+||..|+|||||+-++...+ +..+.. -|+........+.-+..++.+|||+|++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~------------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE 71 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT------------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE 71 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc------------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchH
Confidence 34689999999999999999986211 111111 2444455555555566789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHH-HHHHc----CCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY----GVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~-~~~~~----~~p~iiviNKiD~~~ 221 (777)
.|...+..+++.|.++|+|.|.+....-...++|. .+..+ ++-.++|.||+|+..
T Consensus 72 rFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 72 RFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred hhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 99999999999999999999999765555555553 33332 445578999999764
No 285
>PRK13768 GTPase; Provisional
Probab=99.26 E-value=8.4e-11 Score=123.53 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccc---------cchhhhh---h----cceeEeeeE----
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATM---------DWMEQEQ---E----RGITITSAA---- 147 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~---------d~~~~e~---~----~g~Ti~~~~---- 147 (777)
..+++.|..|+||||++..+... .|.....-..+++.... ++..... + ++...-...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 46899999999999999888533 23322233344443322 2111110 1 110000000
Q ss_pred E-------EEEecCeEEEEEeCCCCcchH---HH---HHHHHHh--cCeEEEEEeCCCCCchHHHHHHHHHH-----HcC
Q 004038 148 T-------TTYWNKHRINIIDTPGHVDFT---LE---VERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYG 207 (777)
Q Consensus 148 ~-------~~~~~~~~i~liDTPG~~df~---~~---~~~~l~~--aD~~ilVvda~~g~~~~~~~~~~~~~-----~~~ 207 (777)
. .+...+..+.+|||||..++. .. ..+.+.. ++++++|+|+..+....+......+. +.+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 0 001123479999999987642 22 2333333 89999999999887777655444332 579
Q ss_pred CCEEEEEEccCCCCcc
Q 004038 208 VPRICFVNKMDRLGAN 223 (777)
Q Consensus 208 ~p~iiviNKiD~~~~~ 223 (777)
+|+++|+||+|+...+
T Consensus 163 ~~~i~v~nK~D~~~~~ 178 (253)
T PRK13768 163 LPQIPVLNKADLLSEE 178 (253)
T ss_pred CCEEEEEEhHhhcCch
Confidence 9999999999987643
No 286
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=7.9e-11 Score=125.18 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=88.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+|+|+...- ....+... .......+.+++......+..++ ..+++|||||+.|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~-~~~~~~~~-------~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKL-IPSDYPPD-------PAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCC-ccccCCCC-------ccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 35899999999999999999962211 11000000 00111223334444445555555 4799999999877
Q ss_pred hHHH---------------------HHHHHH-------hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEccC
Q 004038 168 FTLE---------------------VERALR-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (777)
Q Consensus 168 f~~~---------------------~~~~l~-------~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKiD 218 (777)
+... .....+ .+|++++++++. .++...+.++++.+.. ++|+++|+||+|
T Consensus 76 ~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D 154 (276)
T cd01850 76 NINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKAD 154 (276)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCC
Confidence 5321 111112 368899999987 5888888898988875 899999999999
Q ss_pred CCCc-chHhHHHHHHHHhCC
Q 004038 219 RLGA-NFFRTRDMIVTNLGA 237 (777)
Q Consensus 219 ~~~~-~~~~~~~~i~~~l~~ 237 (777)
+... +.....+.+++.+..
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 9653 334445555555543
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.25 E-value=2.9e-11 Score=118.99 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---cCeEEEEEeCCCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGH 165 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDTPG~ 165 (777)
+.+.|.|+|..|+|||+|+..|.+. .... |+ +++ .....+.. .+..+.+||+|||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~--~~~~--------T~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH 59 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG--KTVP--------TV-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGH 59 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS--S-----------B--------------S-SEEEECCGSSTCGTCECEEEETT-
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CcCC--------ee-----------ccc-cCCceEEeecCCCCEEEEEECCCc
Confidence 3568999999999999999999732 1110 10 111 11111211 3467999999999
Q ss_pred cchHHHHHHH---HHhcCeEEEEEeCCCCCchHHHHHHHHH-------H--HcCCCEEEEEEccCCCCcch
Q 004038 166 VDFTLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQA-------D--KYGVPRICFVNKMDRLGANF 224 (777)
Q Consensus 166 ~df~~~~~~~---l~~aD~~ilVvda~~g~~~~~~~~~~~~-------~--~~~~p~iiviNKiD~~~~~~ 224 (777)
..+....... +..+.++|+|||++. ...+.++..+++ . ..++|++|+.||.|+..+..
T Consensus 60 ~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 60 PRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9988877776 889999999999984 222223322222 1 24789999999999988653
No 288
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.3e-11 Score=115.32 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=88.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++-.+|+++|--+|||||++..|- .|.+... --|+..+...+.+++..+++||..|+..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk--~~E~vtt-------------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLK--LGEIVTT-------------------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeec--cCCcccC-------------------CCccccceeEEEEcceEEEEEecCCCcc
Confidence 455689999999999999999883 2211110 1267777788888999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCC--chHHHHHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
+..-+..+.+..+++|+|||+++.. ...-.++.+.+.. .+.|.+++.||.|..++
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 9999999999999999999999743 2222333344433 37899999999998875
No 289
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=114.15 Aligned_cols=114 Identities=20% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEE----EEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT----TTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~----~~~~~~~~i~liDTP 163 (777)
..+.+|.|+|.+|+|||||.|++.+..- ++....||..... .+.-+...+.+|||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF--------------------~~qykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF--------------------SQQYKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH--------------------HHHhccccchhheeeEEEEcCeEEEEEEEecc
Confidence 4568999999999999999999963211 0011112222111 122123568899999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-----HHHHH---cCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-----~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|++.|...-...+|.+|.+++|.|....-.....+-| .++.. ...|+|++.||+|..+
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999999999999999999999865544444444 34332 3579999999999865
No 290
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.22 E-value=3e-11 Score=111.47 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+|+|..|+|||||+++|+..... +........+.++.............+.+||++|...+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 5899999999999999999732221 00011111233333333334334456999999999887776
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHH---HHHHHH--cCCCEEEEEEccC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETV---WRQADK--YGVPRICFVNKMD 218 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~---~~~~~~--~~~p~iiviNKiD 218 (777)
....+..+|++++|+|.++....+. ..+ +..... .++|+++|.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6666999999999999997543222 223 222322 3599999999998
No 291
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1e-10 Score=111.98 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
...+.++|..|+|||.|+-++. ... ...+++ -.-|+..-....+++-+..++++|||.|++.|.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~---~kr--F~~~hd-----------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr 69 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT---DKR--FQPVHD-----------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR 69 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh---ccC--cccccc-----------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHH
Confidence 4578999999999999999985 111 001110 011222222223333355789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc---CCCEEEEEEccCCCCc
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---GVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~iiviNKiD~~~~ 222 (777)
.-+..+++.+-++|||.|.+....-.-.. ++..++++ ++-++++.||+|+...
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 99999999999999999998654433333 33445554 5667788899998653
No 292
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.21 E-value=2.5e-10 Score=115.74 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-----ecCeEEEEEeCCCCc
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPGHV 166 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDTPG~~ 166 (777)
+|+++|..++|||||+++++. +.... . ....-|.++......+. -....++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~--~~f~~-----------~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICK--NQVLG-----------R---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC-----------C---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 689999999999999999972 21100 0 00011222222222221 123579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH----------------------cCCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----------------------YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~----------------------~~~p~iiviNKiD~~~~ 222 (777)
+|.......++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9988888899999999999999987655444433 33322 26899999999998653
No 293
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=7.7e-11 Score=123.48 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=83.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~ 166 (777)
+-+-.|++||-||+|||||++++ +.+..++++.. =+|+..+...+.. .+..+++-|.||.+
T Consensus 157 KllADVGLVG~PNaGKSTlls~v---S~AkPKIadYp---------------FTTL~PnLGvV~~~~~~sfv~ADIPGLI 218 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAV---SAAKPKIADYP---------------FTTLVPNLGVVRVDGGESFVVADIPGLI 218 (369)
T ss_pred eeecccccccCCCCcHHHHHHHH---hhcCCcccCCc---------------cccccCcccEEEecCCCcEEEecCcccc
Confidence 44557999999999999999999 45555555432 1455555555543 45679999999986
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCCCC----chHHHHHHHHHHHc-----CCCEEEEEEccCCCCc
Q 004038 167 D-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADKY-----GVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 d-------f~~~~~~~l~~aD~~ilVvda~~g~----~~~~~~~~~~~~~~-----~~p~iiviNKiD~~~~ 222 (777)
. +..+.++-+..+.+.+.|||.+..- ......+...+.++ +.|.++|+||+|....
T Consensus 219 EGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 219 EGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred cccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 4 4455788888999999999998432 23334455555554 7899999999996543
No 294
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.20 E-value=2.3e-10 Score=123.68 Aligned_cols=139 Identities=19% Similarity=0.143 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCcc-----c-cchhhh---hhcceeEeeeEEE--E---
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT-----M-DWMEQE---QERGITITSAATT--T--- 150 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~~-----~-d~~~~e---~~~g~Ti~~~~~~--~--- 150 (777)
.+...|+|.|.+|+|||||+++|.... |.....-.+|+.+.. + |....+ ...+.-+.+.... +
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 456799999999999999999985433 322223344443332 1 322222 2223222221111 1
Q ss_pred -----------EecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHcCCCEEEEEEcc
Q 004038 151 -----------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 151 -----------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~~~p~iiviNKi 217 (777)
...++.+.||||+|... .++. ....+|.+++|++...|..-|... .++.+ -++|+||+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKa 204 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKA 204 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehh
Confidence 12468999999999873 2222 577899999998755554444322 33333 38999999
Q ss_pred CCCCcc-hHhHHHHHHHHh
Q 004038 218 DRLGAN-FFRTRDMIVTNL 235 (777)
Q Consensus 218 D~~~~~-~~~~~~~i~~~l 235 (777)
|+.... ..+...++++.|
T Consensus 205 Dl~~~~~a~~~~~el~~~L 223 (332)
T PRK09435 205 DGDNKTAARRAAAEYRSAL 223 (332)
T ss_pred cccchhHHHHHHHHHHHHH
Confidence 987543 333444444433
No 295
>PLN00023 GTP-binding protein; Provisional
Probab=99.18 E-value=3.3e-10 Score=120.74 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=80.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-------------
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------- 151 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~------------- 151 (777)
.++....+|+++|..|+|||||+++++ .+..... ....-|.+.......+.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~--~g~F~~~--------------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~ 79 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIV--KGSSIAR--------------PPQTIGCTVGVKHITYGSPGSSSNSIKGDS 79 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHh--cCCcccc--------------cCCceeeeEEEEEEEECCcccccccccccC
Confidence 345566799999999999999999996 2211000 00111222222222221
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc---------------CCCEEEEEE
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---------------GVPRICFVN 215 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~---------------~~p~iiviN 215 (777)
.....++||||+|+..|......+++.+|++|+|+|.++........ +++.+... ++|+++|.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 02356999999999999998899999999999999999754333332 33444432 478999999
Q ss_pred ccCCCC
Q 004038 216 KMDRLG 221 (777)
Q Consensus 216 KiD~~~ 221 (777)
|+|+..
T Consensus 160 K~DL~~ 165 (334)
T PLN00023 160 KADIAP 165 (334)
T ss_pred Cccccc
Confidence 999864
No 296
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=2.5e-10 Score=118.75 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=127.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
-.-.|+++|.+++|||||+++| |+..+..++.. -+|...-..-+++++..|+++|+||...-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~L---Tnt~seva~y~---------------FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKL---TNTKSEVADYP---------------FTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHH---hCCCccccccC---------------ceecccccceEeecCceEEEEcCcccccC
Confidence 3468999999999999999999 56666555432 24666666778999999999999997531
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC-----CEEEEEEccCCCCcc----------hHh
Q 004038 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLGAN----------FFR 226 (777)
Q Consensus 169 -------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~-----p~iiviNKiD~~~~~----------~~~ 226 (777)
..++...+|.||++++|+|+...... ...+.+.+...|+ |.-+.+.|-++-+-+ -++
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~ 202 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDED 202 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHH
Confidence 35688899999999999999975543 3445566666554 334445454432211 123
Q ss_pred HHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHH
Q 004038 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (777)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l 306 (777)
.+..+.+.++.+.+.+.+ .++-....++|.+... ..|-+. -+..+.+
T Consensus 203 ~ir~iL~Ey~I~nA~V~I--r~dvTlDd~id~l~~n-rvY~p~----l~v~NKi-------------------------- 249 (365)
T COG1163 203 TVRAILREYRIHNADVLI--REDVTLDDLIDALEGN-RVYKPA----LYVVNKI-------------------------- 249 (365)
T ss_pred HHHHHHHHhCcccceEEE--ecCCcHHHHHHHHhhc-ceeeee----EEEEecc--------------------------
Confidence 455555666766554433 3334444455554433 222221 0001110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhC
Q 004038 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (777)
Q Consensus 307 ~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~l 359 (777)
..++.+++....+. .+.++.||.++.|+++|.+.|.+.+
T Consensus 250 -------D~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 250 -------DLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred -------cccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 11122222222211 2577889999999999999999876
No 297
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.9e-10 Score=101.98 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=81.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+..-.+.|+|...+|||||+-+.+..+-... . -+.-|+..+.....-.-+..++.+|||.|++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~a---------f-------vsTvGidFKvKTvyr~~kRiklQiwDTagqEr 82 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---------F-------VSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER 82 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccc---------e-------eeeeeeeEEEeEeeecccEEEEEEEecccchh
Confidence 3445899999999999999988751111000 0 01123333333222222446899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHH---HcCCCEEEEEEccCCCCcc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~iiviNKiD~~~~~ 223 (777)
+..-+..++|.+++.||+.|.+..-.-...+-| .+++ ..+.|+|+|.||+|+....
T Consensus 83 yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 83 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 999999999999999999999865433333322 2333 3489999999999987543
No 298
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.13 E-value=1.2e-09 Score=118.10 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=52.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeE-------------EEE---EecCeE
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-------------TTT---YWNKHR 156 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~-------------~~~---~~~~~~ 156 (777)
|+++|.+|+|||||+|+|. +.....+.. ++++. +...|+...... ... .+....
T Consensus 1 i~ivG~pnvGKStLfn~lt---~~~~~~~~~-pftT~------~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~ 70 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT---LADVEIANY-PFTTI------DPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP 70 (318)
T ss_pred CEEECCCCCCHHHHHHHHh---CCCCcccCC-CCccc------cceeEEEEEecCCCchhhhhhhcccccccccCcCcce
Confidence 6899999999999999995 322221111 11110 111111110000 000 113357
Q ss_pred EEEEeCCCCc----ch---HHHHHHHHHhcCeEEEEEeCCC
Q 004038 157 INIIDTPGHV----DF---TLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 157 i~liDTPG~~----df---~~~~~~~l~~aD~~ilVvda~~ 190 (777)
+++|||||.. .+ .......++.||++++|+|+..
T Consensus 71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999999983 22 3456778999999999999974
No 299
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.6e-10 Score=110.73 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhc--ceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQER--GITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~--g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
-+..-.|+++|.+++|||-|+.++.. + -+..+.+. |+........+.-+-.+.++|||+|
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftr--n----------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG 72 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTR--N----------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG 72 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcc--c----------------ccCcccccceeEEEEeeceeecCcEEEEeeecccc
Confidence 35677899999999999999999841 1 11111112 2222222222333445788999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
+..|..-+..+++.|-++++|.|.+...+-+.. ++++.++.+ ++++++|.||+|+..
T Consensus 73 QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 73 QERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 999999999999999999999999876554433 445666654 688899999999865
No 300
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.11 E-value=2.4e-10 Score=115.65 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce---eeeeec-------CC-----ccccchh------hhhhcceeEee
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---IGEVHE-------GT-----ATMDWME------QEQERGITITS 145 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~---~g~v~~-------g~-----~~~d~~~------~e~~~g~Ti~~ 145 (777)
.++...|.++|..|+||||++.+|......... ..++++ +. .+.++.+ ..+..||+...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 456678999999999999999999754433221 111111 11 1122222 23444554443
Q ss_pred eEEEEEe-----------cCeEEEEEeCCCCcch-H-----HHHHHHHHhc--CeEEEEEeCCCCCchHH-----HHHHH
Q 004038 146 AATTTYW-----------NKHRINIIDTPGHVDF-T-----LEVERALRVL--DGAICLFDSVAGVEPQS-----ETVWR 201 (777)
Q Consensus 146 ~~~~~~~-----------~~~~i~liDTPG~~df-~-----~~~~~~l~~a--D~~ilVvda~~g~~~~~-----~~~~~ 201 (777)
+.....+ ....+.||||||+++. . .-...++..+ -.+++|+|....-.+.| .....
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 3322222 3467999999999752 1 1122233332 46788999875544433 33456
Q ss_pred HHHHcCCCEEEEEEccCCCCcch
Q 004038 202 QADKYGVPRICFVNKMDRLGANF 224 (777)
Q Consensus 202 ~~~~~~~p~iiviNKiD~~~~~~ 224 (777)
++.+..+|.|++.||.|..+.++
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHHhccCCeEEEEecccccccHH
Confidence 67788999999999999987654
No 301
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.08 E-value=2.9e-09 Score=109.24 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--c--CeEEEEEeCCCCc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--N--KHRINIIDTPGHV 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--~--~~~i~liDTPG~~ 166 (777)
..|+++|..|+|||||+++|... ... .+.. .|+......... . ...+.+|||+|+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~--~~~----------------~~~~--~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD--EFP----------------EGYP--PTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC--cCc----------------ccCC--CceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 78999999999999999999621 111 0001 111111111111 1 3569999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCC--CCchHHHHHHHHHHHc---CCCEEEEEEccCCCCcc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGAN 223 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~--g~~~~~~~~~~~~~~~---~~p~iiviNKiD~~~~~ 223 (777)
+|...+..+.+.++++++++|... ............+... +.|+++|.||+|+....
T Consensus 66 ~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 999999999999999999999995 3334444445455553 48999999999998654
No 302
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.06 E-value=4e-09 Score=110.21 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.....+|+++|++|+|||||+|+|+.... ...+ ...+.|.........+++..+++|||||+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~--~~v~---------------~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~ 90 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERK--AATS---------------AFQSETLRVREVSGTVDGFKLNIIDTPGLL 90 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCC--cccC---------------CCCCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 45668999999999999999999972211 0000 012235555555666788999999999998
Q ss_pred chHH------H----HHHHHH--hcCeEEEEEeCCC-CCchHHHHHHHHHHH-cC----CCEEEEEEccCCC
Q 004038 167 DFTL------E----VERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~------~----~~~~l~--~aD~~ilVvda~~-g~~~~~~~~~~~~~~-~~----~p~iiviNKiD~~ 220 (777)
+... . +.+++. ..|.+++|..... .....+..+++.+.. .| .++++|+||+|..
T Consensus 91 ~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 91 ESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 7621 1 112222 3456555544432 233444445544433 23 3566777777764
No 303
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=6.6e-10 Score=109.05 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.+.|.++|..|+|||+|+-.|. .|... + + -+++..+.+.+..++..+.|||.|||..
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~--~gs~~--~------T-----------vtSiepn~a~~r~gs~~~~LVD~PGH~r 94 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLI--TGSHR--G------T-----------VTSIEPNEATYRLGSENVTLVDLPGHSR 94 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehh--cCCcc--C------e-----------eeeeccceeeEeecCcceEEEeCCCcHH
Confidence 445789999999999999999997 23111 0 1 1356666677777777899999999999
Q ss_pred hHHHHHHHHH---hcCeEEEEEeCCCCCc---hHHHHHHHH---H--HHcCCCEEEEEEccCCCCcchHhH
Q 004038 168 FTLEVERALR---VLDGAICLFDSVAGVE---PQSETVWRQ---A--DKYGVPRICFVNKMDRLGANFFRT 227 (777)
Q Consensus 168 f~~~~~~~l~---~aD~~ilVvda~~g~~---~~~~~~~~~---~--~~~~~p~iiviNKiD~~~~~~~~~ 227 (777)
........+. .+-++|+|||+..-.. .-.+.+... . ...++|++++.||-|+.-+...+.
T Consensus 95 lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~ 165 (238)
T KOG0090|consen 95 LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK 165 (238)
T ss_pred HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHH
Confidence 9888888887 7999999999985321 111212222 2 244678899999999988764443
No 304
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.2e-09 Score=98.68 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+..-.|+++|..|+|||.|+.++. .|... .|. |.+ -|+..-.....+.-+..++.+|||+|+..
T Consensus 5 kflfkivlvgnagvgktclvrrft--qglfp-pgq---gat----------igvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QGLFP-PGQ---GAT----------IGVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--ccCCC-CCC---Cce----------eeeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 445689999999999999999985 23221 111 001 11222222233333456899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
|..-+..+++.++++|+|.|.+....-... +.++.+.++ ++-.|+|.||+|+.+
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 999999999999999999999854332222 233444333 445588999999864
No 305
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=100.27 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=80.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
-..+|+|.+++|||+|+-++...+-..+-+ + .-|+........+.-....+.+|||+|.+.|..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYi-------t---------TiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYI-------T---------TIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceE-------E---------EeeeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 356799999999999998885221110000 0 012222333333333456899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
.+..+.+..+++++|.|.+.|-.-... +.++.++.. .+|-++|.||.|.++.
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 999999999999999999987665444 344554432 5788999999998753
No 306
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=5.7e-10 Score=105.78 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=86.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
.--+|.|+|.-|||||||+.++-..- ...-+..++ .+--.|+.....+....+..+.|||.-|+...
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~--~~~~~~l~~-----------~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDF--SKAYGGLNP-----------SKITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHH--HhhhcCCCH-----------HHeecccceeecceeeccceeEEEEcCChHHH
Confidence 34589999999999999999983110 001111000 01123566666666767889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCc-----hHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVE-----PQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~-----~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+.+..++..++++|+||||.+.-. .+-+.+.+.-...|+|+++.+||-|+.++
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999997422 22233444445579999999999998764
No 307
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.01 E-value=2.8e-09 Score=109.15 Aligned_cols=135 Identities=27% Similarity=0.279 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeec------CCccccchh---hhhhcceeEeeeEEEEEe---
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE------GTATMDWME---QEQERGITITSAATTTYW--- 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~------g~~~~d~~~---~e~~~g~Ti~~~~~~~~~--- 152 (777)
.+-..|+|.|.+|+|||||+++|... .|..-.+-.+|+ |+..-|... .....++-|.+....-..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 45679999999999999999999643 333333333443 333334433 234566666655443221
Q ss_pred -------------cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHcCCCEEEEEEcc
Q 004038 153 -------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 153 -------------~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~~~p~iiviNKi 217 (777)
-++.+.||.|-|... .|+ .-...+|.+++|+-...|..-|..+ +++. .-++|+||.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKa 177 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCC
Confidence 478999999999764 232 3367899999999998776655543 5554 349999999
Q ss_pred CCCCcchHhHHHHHHH
Q 004038 218 DRLGANFFRTRDMIVT 233 (777)
Q Consensus 218 D~~~~~~~~~~~~i~~ 233 (777)
|+.+++ ++..+++.
T Consensus 178 D~~gA~--~~~~~l~~ 191 (266)
T PF03308_consen 178 DRPGAD--RTVRDLRS 191 (266)
T ss_dssp SHHHHH--HHHHHHHH
T ss_pred ChHHHH--HHHHHHHH
Confidence 976553 34444443
No 308
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.00 E-value=3.9e-10 Score=95.15 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.7
Q ss_pred ceEEEEEEEeeeecCCCeEEe--CCCCce---eecceeEEeccCceeecceeecCCEEEEcCCCc-ccccceec
Q 004038 404 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 471 (777)
Q Consensus 404 G~l~~~RV~sG~l~~g~~v~~--~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~GdtL~ 471 (777)
|+++++||+||+|++||+|++ ..++++ .+|.+|+.+++...++++.+.+|+++.+.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 545455 899999999999999999999999999999999 79999996
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.00 E-value=7.1e-09 Score=105.77 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=72.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCc--cccchhhhhhccee---EeeeEEE-----------
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA--TMDWMEQEQERGIT---ITSAATT----------- 149 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~--~~d~~~~e~~~g~T---i~~~~~~----------- 149 (777)
+...+++|+++|+.|+|||||+++|+...+...+.+-+. +.. ..|....+ ..|.. +......
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~-~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIE-GDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEE-CCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345789999999999999999999997755322222221 222 22332222 22221 1111100
Q ss_pred --EEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 150 --TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 150 --~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+...+..+.+|+|.|...... ......+..+.|+|+.++..... ......+.|.++++||+|+..
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 001245789999999321111 11123466678999987654322 222334678899999999864
No 310
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.00 E-value=8.7e-09 Score=114.63 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=54.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-------------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~------------------- 151 (777)
.+|+|+|.+|+|||||+|+|. +.....+.. .+.|+....+...
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt---~~~~~~~~y---------------~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~ 63 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT---LADVEIANY---------------PFTTIDPNVGVAYVRVECPCKELGVKCNPRNG 63 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcccccCC---------------CCcceeeeeeeeeeccCCchhhhhhhhccccc
Confidence 379999999999999999995 322222111 1112222211110
Q ss_pred -----ecCeEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 152 -----WNKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 152 -----~~~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
+....++++||||..+ ........++.+|++++|+|+..
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1225689999999642 34467778999999999999973
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.98 E-value=6e-09 Score=112.67 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcc---eeEeeeE-----EEEEe---cCeE
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG---ITITSAA-----TTTYW---NKHR 156 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g---~Ti~~~~-----~~~~~---~~~~ 156 (777)
.-...|+++|++++|||||+|+++.+.- +..+.+.....+..|-.+. ...| +|.+... ..+.. -..+
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 3456899999999999999999974411 1111110000111111111 1223 2222222 11111 1368
Q ss_pred EEEEeCCCCcc-------------------------hHHH----HHHHHH-hcCeEEEEE-eCC------CCCchHHHHH
Q 004038 157 INIIDTPGHVD-------------------------FTLE----VERALR-VLDGAICLF-DSV------AGVEPQSETV 199 (777)
Q Consensus 157 i~liDTPG~~d-------------------------f~~~----~~~~l~-~aD~~ilVv-da~------~g~~~~~~~~ 199 (777)
+.||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....+++
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 99999999864 1111 556677 899999999 886 5567778889
Q ss_pred HHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 200 WRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 200 ~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
++.+++.++|+++++||.|-...+-....+++.++++...+++
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 9999999999999999999554445556678888888654544
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.96 E-value=6.5e-09 Score=107.57 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCcch-------------HHHHHHHHH-hcCeEEEEEeCCCCCchHH-HHHHHHHHHcCCCEEEEEEccCC
Q 004038 155 HRINIIDTPGHVDF-------------TLEVERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 155 ~~i~liDTPG~~df-------------~~~~~~~l~-~aD~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
..++||||||+.+. ...+..+++ ..+.+++|+|+..++..++ .++.+.++..+.|.++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 57999999999631 223666777 4569999999999988877 58888889999999999999998
Q ss_pred CCcc
Q 004038 220 LGAN 223 (777)
Q Consensus 220 ~~~~ 223 (777)
....
T Consensus 205 ~~~~ 208 (240)
T smart00053 205 MDEG 208 (240)
T ss_pred CCcc
Confidence 7643
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.96 E-value=9.3e-09 Score=106.82 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=63.3
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCc---ceeeeeecCCccccchh------------hhhh------cceeEeeeEE--EEE
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRN---YKIGEVHEGTATMDWME------------QEQE------RGITITSAAT--TTY 151 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~---~~~g~v~~g~~~~d~~~------------~e~~------~g~Ti~~~~~--~~~ 151 (777)
|+|.+|+||||++.++....... ....+.|++....++.+ ...+ .+++...... .++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999996544332 33556666654332211 1111 1111111100 011
Q ss_pred e-------cCeEEEEEeCCCCcchHHHH------HHHHH--hcCeEEEEEeCCCCCchHHH-----HHHHHHHHcCCCEE
Q 004038 152 W-------NKHRINIIDTPGHVDFTLEV------ERALR--VLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRI 211 (777)
Q Consensus 152 ~-------~~~~i~liDTPG~~df~~~~------~~~l~--~aD~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~i 211 (777)
| ....+.++||||+.+|..-. ...+. ..=++|+++|+..-..+... ..+....+.++|+|
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 12379999999998764332 22222 23478999999854433322 12233455799999
Q ss_pred EEEEccCCCCcc
Q 004038 212 CFVNKMDRLGAN 223 (777)
Q Consensus 212 iviNKiD~~~~~ 223 (777)
.|+||+|+....
T Consensus 161 nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 NVLSKIDLLSKY 172 (238)
T ss_dssp EEE--GGGS-HH
T ss_pred EeeeccCcccch
Confidence 999999998754
No 314
>PTZ00099 rab6; Provisional
Probab=98.95 E-value=7.7e-09 Score=102.70 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=53.3
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+...++||||||+..|...+..+++.+|++|+|+|.++....+... .+..+.. .++|+++|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 3468899999999999998999999999999999999864433332 3333322 3578899999999853
No 315
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-08 Score=94.43 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+....+.++|..|.|||.|+.+++...-.. | ....-|+...+..++..-+..++.+|||+|+..
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkD-------------d---ssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr 70 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKD-------------D---SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER 70 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcc-------------c---ccceeeeeecceeeeecCcEEEEEEeecccHHH
Confidence 456789999999999999999997321110 0 111123333333444444567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHHc---CCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKY---GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~~---~~p~iiviNKiD~~~~ 222 (777)
|..-+..+++.|-++++|.|++....-....- +.-++.+ ++-++++.||-|+...
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 99999999999999999999997554443333 3344444 4455667899998643
No 316
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.7e-09 Score=99.17 Aligned_cols=113 Identities=23% Similarity=0.193 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+--+|.++|-.|+||||+.-+|- .|++.. .--|+..+...+.+++-++++||.-|....
T Consensus 17 ~e~rililgldGaGkttIlyrlq--------vgevvt-------------tkPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--------VGEVVT-------------TKPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--------cCcccc-------------cCCCCCcCccccccccccceeeEccCcccc
Confidence 44578899999999999877662 222211 012455566667778999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCc--hHHHHHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVE--PQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~--~~~~~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
..-+..++...|.+|+|||.++-.. ....++..++.+ .+...+++.||+|-..+
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 9999999999999999999996543 222333333332 35667889999997654
No 317
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.3e-08 Score=93.05 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=82.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
--.|..+|-.++||||++-.|- .+..... . -|+..+.....+++..+|+||..|.....
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLk--l~~~~~~---------i----------pTvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLK--LGQSVTT---------I----------PTVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cceEEEEecccCCceehhhHHh--cCCCccc---------c----------cccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 3478899999999999999985 2211110 0 13444555667789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCC--chHHHHHHHHH---HHcCCCEEEEEEccCCCCcc
Q 004038 170 LEVERALRVLDGAICLFDSVAGV--EPQSETVWRQA---DKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~--~~~~~~~~~~~---~~~~~p~iiviNKiD~~~~~ 223 (777)
.-+.+++....++|+|+|+.+.- ...-.++-+.+ .....++++..||-|++.+-
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 99999999999999999998652 22222222222 22468889999999998763
No 318
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.88 E-value=1.5e-08 Score=92.67 Aligned_cols=114 Identities=24% Similarity=0.249 Sum_probs=81.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~ 166 (777)
.+-.+|+++|--|+||||++..|- +. |....-+..|+ +...+.+.+ .++|+||..|..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~---sE--------------D~~hltpT~GF----n~k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLK---SE--------------DPRHLTPTNGF----NTKKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHc---cC--------------ChhhccccCCc----ceEEEeecCcEEEEEEecCCcc
Confidence 556789999999999999999993 21 11111122333 233444544 899999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCC--chHHHHHHHH---HHHcCCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQ---ADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~--~~~~~~~~~~---~~~~~~p~iiviNKiD~~~~ 222 (777)
....-+..++...|++|+|||+++.- .....+..++ .+...+|+.++.||-|++.+
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 99999999999999999999988642 2222233333 33457899999999998754
No 319
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.9e-08 Score=110.02 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
+..|+++|++|.|||||+..|+.. ++.+.-.+....||+.++ +..+++|+.|| .| .
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr---------------~tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~D-l 124 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRR---------------FTKQTIDEIRGPITVVSG------KTRRITFLECP--SD-L 124 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHH---------------HHHhhhhccCCceEEeec------ceeEEEEEeCh--HH-H
Confidence 345679999999999999999622 222222334445666555 45899999999 23 5
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEE-EEEccCCCCcchHhHHHHHHHHhC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLG 236 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ii-viNKiD~~~~~~~~~~~~i~~~l~ 236 (777)
..++...+.||+++|+||++.|+...|.+++.++..+|.|.++ |++.+|+... ..++.+++++|+
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlk 190 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLK 190 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHh
Confidence 6788889999999999999999999999999999999999875 7899998764 345566666554
No 320
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.86 E-value=8.4e-09 Score=92.76 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=63.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC----c
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~----~ 166 (777)
.+|+++|.+|+|||||+++|. |... .-.....++|++. -.|||||- .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~---G~~~------------------------lykKTQAve~~d~--~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY---GNDT------------------------LYKKTQAVEFNDK--GDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhh---cchh------------------------hhcccceeeccCc--cccCCchhhhhhh
Confidence 478999999999999999995 2110 0000111223221 25999993 3
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+..........+|.+++|-.++++.+.---.+ +.-...|+|-|++|+|+..
T Consensus 53 ~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 53 RWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred HHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEecccccc
Confidence 333445566678899999999998754322222 2223467899999999973
No 321
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.86 E-value=3.2e-09 Score=98.69 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeee----EEEEEecCeEEEEEeCCCC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA----ATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~----~~~~~~~~~~i~liDTPG~ 165 (777)
.-.|+++|..=+|||||+-+.+...-.-... .|+..+ ..++.-....+++|||+|+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--------------------sTlQASF~~kk~n~ed~ra~L~IWDTAGQ 72 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--------------------STLQASFQNKKVNVEDCRADLHIWDTAGQ 72 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhH--------------------HHHHHHHhhcccccccceeeeeeeeccch
Confidence 4579999999999999998886321100000 011111 1112222357899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~iiviNKiD~~~ 221 (777)
..|-..-..+++.+|++++|.|.++....|-..-| ..+++ ..+-.+||.||+|+..
T Consensus 73 ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 73 ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 99988888889999999999999987666655443 33333 2456688999999864
No 322
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.83 E-value=4.2e-08 Score=98.88 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|..|+|||+|+-+++...- . ...+ ...+....+-+++ .-....+.++||+|..+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~--~~y~------ptied~y~k~~~v-------~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--V--EDYD------PTIEDSYRKELTV-------DGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--c--cccC------CCccccceEEEEE-------CCEEEEEEEEcCCCcccCh
Confidence 46899999999999999999862111 0 0000 0000111111222 2234567799999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH----HcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|+.++|++.++...-+... +++++. ...+|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 99999999999999999999765443332 333332 23679999999999875
No 323
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.83 E-value=7e-08 Score=102.52 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|.+|+|||||+|+|+ |......+ ++ .+.+.........+.+..+++|||||..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIl---G~~v~~vs--------~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSII---GERIATVS--------AF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh---CCCccccc--------CC------CCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 456799999999999999999997 22111000 00 11122222333456789999999999986
Q ss_pred hH---HHHHHHHH------hcCeEEEEEeCCC-CCchHHHHHHHHHHHc-----CCCEEEEEEccCCC
Q 004038 168 FT---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRL 220 (777)
Q Consensus 168 f~---~~~~~~l~------~aD~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~iiviNKiD~~ 220 (777)
.. .+....++ ..|++|+|..... .....+..+++.+... -.+.|+++|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 42 22333333 4789999954432 3444555566555432 25689999999966
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.82 E-value=7.3e-08 Score=104.02 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCcc-----c-cchh---hhhhcceeEeeeEEE------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT-----M-DWME---QEQERGITITSAATT------ 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~~-----~-d~~~---~e~~~g~Ti~~~~~~------ 149 (777)
.....|+|+|.+|+|||||++.|.... |.....-..++.... . |... .....+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 457899999999999999999986532 222222222322211 1 1100 001122221111111
Q ss_pred ----------EEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
+...++.+.||||||... .....+..+|.++++.+...+..-+. .... -.++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~--~~~~--l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQG--IKAG--LMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHH--HHHH--HhhhccEEEEEcccc
Confidence 112478999999999753 22346778899998876554322111 1111 246889999999998
Q ss_pred CCc
Q 004038 220 LGA 222 (777)
Q Consensus 220 ~~~ 222 (777)
...
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 764
No 325
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.81 E-value=2.3e-08 Score=102.16 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=88.3
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhh-hcceeEeeeEEEEEecCeEEEEEeC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQ-ERGITITSAATTTYWNKHRINIIDT 162 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~-~~g~Ti~~~~~~~~~~~~~i~liDT 162 (777)
..+.++.+.+++.|.+|+|||+|+|.++.... +. ..+. +.|-|....... -+..+.++|.
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~---------------~t~k~K~g~Tq~in~f~---v~~~~~~vDl 190 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKN-IA---------------DTSKSKNGKTQAINHFH---VGKSWYEVDL 190 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhh-hh---------------hhcCCCCccceeeeeee---ccceEEEEec
Confidence 34556778999999999999999999962211 11 1111 445555444333 4678999999
Q ss_pred CCCc----------chHHHHHHHH---HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 163 PGHV----------DFTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 163 PG~~----------df~~~~~~~l---~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
||+. |+...+..++ +..-.+.+++|++-+++..+...+.++.+.++|+.+|+||||+..
T Consensus 191 PG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 191 PGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred CCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 9942 3444444443 566778999999999999999999999999999999999999864
No 326
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.81 E-value=9.3e-08 Score=89.72 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchh--hhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~--~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
-++.+||..-+|||+|+..+. .|...... +-+.-.|++. .|-++|. ..++.||||+|+..|
T Consensus 9 frlivigdstvgkssll~~ft--~gkfaels---dptvgvdffarlie~~pg~------------riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFT--EGKFAELS---DPTVGVDFFARLIELRPGY------------RIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHh--cCcccccC---CCccchHHHHHHHhcCCCc------------EEEEEEeeccchHHH
Confidence 467899999999999999885 34332222 2223334433 3444453 257889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH-cC---CC-EEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-YG---VP-RICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~-~~---~p-~iiviNKiD~~~ 221 (777)
..-+..+++++-++++|.|.+.--.-.-.+.| ..+.. .+ .+ +.+|..|.|+..
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 99999999999999999999865433333333 22222 22 22 357889999864
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.80 E-value=8.3e-08 Score=99.59 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH---hcCCcceeeeeecC------Cccccchhhh---hhcceeEeeeEEEEEe---
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF---YTGRNYKIGEVHEG------TATMDWMEQE---QERGITITSAATTTYW--- 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~---~~g~~~~~g~v~~g------~~~~d~~~~e---~~~g~Ti~~~~~~~~~--- 152 (777)
.+...|+|.|.+|+|||||++.|.. ..|....+-.+|+. +..-|..... ...|+-+.+....-..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 4556899999999999999999953 33443333344443 2223332221 2334444333322111
Q ss_pred -------------cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHcCCCEEEEEEcc
Q 004038 153 -------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 153 -------------~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~~~p~iiviNKi 217 (777)
-++.+.||.|-|... .+ ..-...+|..++|.-+.-|...|..+ +++.+. |+||||+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQ--se-v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------i~vINKa 199 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQ--SE-VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------IIVINKA 199 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCc--ch-hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------eeeEecc
Confidence 468899999998753 12 23346789999999888887777664 444444 9999999
Q ss_pred CCCCcchHhHHHHHHHH
Q 004038 218 DRLGANFFRTRDMIVTN 234 (777)
Q Consensus 218 D~~~~~~~~~~~~i~~~ 234 (777)
|+.+++ .+..+++..
T Consensus 200 D~~~A~--~a~r~l~~a 214 (323)
T COG1703 200 DRKGAE--KAARELRSA 214 (323)
T ss_pred ChhhHH--HHHHHHHHH
Confidence 976654 333444433
No 328
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.80 E-value=1.3e-08 Score=99.95 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=48.5
Q ss_pred CeEEEEEeCCCCcch----HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH-cCCCEEEEEEcc
Q 004038 154 KHRINIIDTPGHVDF----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFVNKM 217 (777)
Q Consensus 154 ~~~i~liDTPG~~df----~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~iiviNKi 217 (777)
...+.||||||..+. ...+..++..+|++|+|+++...........+..... .....++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 356999999998642 2457888899999999999999888776666655544 455678888985
No 329
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.80 E-value=3.1e-07 Score=100.18 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC----------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 154 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---------------- 154 (777)
.+|+|+|.+|+|||||+|+|. +.....+. .+++|+....+.+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt---~~~~~v~n---------------ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT---KAGAEAAN---------------YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCeecc---------------cccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 479999999999999999994 43322221 13445444444443332
Q ss_pred -eEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCC
Q 004038 155 -HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (777)
Q Consensus 155 -~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~ 189 (777)
..+.|+||||..+ +.......++.+|++++|||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3599999999753 3446777889999999999995
No 330
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.79 E-value=1.1e-07 Score=97.45 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch--
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df-- 168 (777)
++|+++|.+|+||||++|.|+ |...... .......|.........+.+..+++|||||+.|-
T Consensus 1 l~IlllG~tGsGKSs~~N~il---g~~~f~~-------------~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSIL---GKEVFKS-------------GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHH---TSS-SS---------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHh---cccceee-------------ccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 489999999999999999997 2111000 0011234555555566789999999999998652
Q ss_pred -----HHHHHHHHH----hcCeEEEEEeCCCCCchHHHHHHHHHHHc-C----CCEEEEEEccCCCCcc
Q 004038 169 -----TLEVERALR----VLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLGAN 223 (777)
Q Consensus 169 -----~~~~~~~l~----~aD~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~iiviNKiD~~~~~ 223 (777)
..++..++. ..+++|+|++.. .+...++..++.+... | .-++|+++..|....+
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 333444433 358999999998 7788888888776642 3 3478888999876643
No 331
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.79 E-value=6.9e-08 Score=99.35 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=73.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcchHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~df~~ 170 (777)
+|+++|..++||||..+.++.... . .|. ..-|.|++.....+.. ....+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~--p-----------~dT----~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS--P-----------RDT----LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-----G-----------GGG----GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC--c-----------hhc----cccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 589999999999999999872111 0 011 1124566666555643 455999999999998766
Q ss_pred H-----HHHHHHhcCeEEEEEeCC-CCCch---HHHHHHHHHHHc--CCCEEEEEEccCCCCcc
Q 004038 171 E-----VERALRVLDGAICLFDSV-AGVEP---QSETVWRQADKY--GVPRICFVNKMDRLGAN 223 (777)
Q Consensus 171 ~-----~~~~l~~aD~~ilVvda~-~g~~~---~~~~~~~~~~~~--~~p~iiviNKiD~~~~~ 223 (777)
. ....++.++++|+|+|+. +.... ....+++.+.+. ++.+.+++.|||+...+
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 5 466789999999999999 33222 222344555554 67788999999998755
No 332
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.77 E-value=5.6e-09 Score=94.33 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=76.3
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHH
Q 004038 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 174 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 174 (777)
++|.++.|||.|+-++- .| ..-.|++.. ..||........+.-+..++++|||.|+..|..-+..
T Consensus 2 llgds~~gktcllir~k--dg------afl~~~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--DG------AFLAGNFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec--cC------ceecCceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999999875541 11 111222211 1234444444444445578999999999999999999
Q ss_pred HHHhcCeEEEEEeCCCCCchHHHHH-HHHHHHc---CCCEEEEEEccCCCC
Q 004038 175 ALRVLDGAICLFDSVAGVEPQSETV-WRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 175 ~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
+++.+|..+++.|......-..... +.++.++ .+...++.||+|+..
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 9999999999999987665544433 3444443 466778999999864
No 333
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.9e-09 Score=113.09 Aligned_cols=131 Identities=34% Similarity=0.360 Sum_probs=106.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--------------eeeeecCCccccchhhhhhcceeEeeeEEEEEec
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--------------IGEVHEGTATMDWMEQEQERGITITSAATTTYWN 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--------------~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 153 (777)
...+||+++||.++||||+.- +.+|.++. .|. ...++.+|+...|++||++|+.....+...
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgs-f~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGS-FKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccce-eeeeeeechhhhccccceEEEEEeecccce
Confidence 446899999999999999887 33444332 111 123488999999999999999998888888
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
.+.++++|.|||.||...+......+|.+++.|.+.-| ...|++++..++...++.. ++.+||||....
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 89999999999999999999999999999999999432 3589999999999998665 667999997653
No 334
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.71 E-value=1e-07 Score=83.87 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCC--
Q 004038 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (777)
Q Consensus 387 ~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 462 (777)
+.||++.|.+++..++.|++..|||.+|+++.||+|++.+.+...+|++|... ..++++|.|||.+++ .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHH
Confidence 57999999999998888999999999999999999999998888899999754 367899999999988 4443
Q ss_pred cccccceeccCCC
Q 004038 463 DTITGETLCDADH 475 (777)
Q Consensus 463 ~~~~GdtL~~~~~ 475 (777)
++.+|+.||++++
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998653
No 335
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.71 E-value=6.3e-08 Score=82.15 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=67.6
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCC--CCceeecceeEEeccCceeecceeecCCEEEEcCCCc--cc
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 465 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~--~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~ 465 (777)
+.++|++++.+++.|+++++||++|+|++||.+++.+ .....+|.+|+..+ .+++++.|||++++.+.+. ++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3578999999998899999999999999999999887 66678899988765 6788999999999987654 88
Q ss_pred ccceec
Q 004038 466 TGETLC 471 (777)
Q Consensus 466 ~GdtL~ 471 (777)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 899875
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.69 E-value=2.4e-07 Score=98.82 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=101.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.-..||.++|..|.||||++|.|+...-... ....+....-..+++.+......+.-++ ..+++|||||+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~--------~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDE--------TEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCC--------CCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 3356999999999999999999984411110 0111111111345556666666665555 46889999999
Q ss_pred cchHHH--------------HHHHHH--------------hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEc
Q 004038 166 VDFTLE--------------VERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (777)
Q Consensus 166 ~df~~~--------------~~~~l~--------------~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNK 216 (777)
.|+... ...++. ..+++|+.+..+ +|+.+.+.+.++.+.+. +.+|-||-|
T Consensus 93 GD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~K 171 (373)
T COG5019 93 GDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAK 171 (373)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeec
Confidence 886322 111221 247888888876 89999999998877654 888999999
Q ss_pred cCCCCcc-hHhHHHHHHHHhCCCceeEEeccC
Q 004038 217 MDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 217 iD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
.|....+ +....+.|++.+....+++.-|..
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence 9987644 566667777777666666665643
No 337
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.69 E-value=1.2e-07 Score=103.23 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCcch
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 168 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~df 168 (777)
..||||+|.+|+|||||+|+|. |... -++|...+... .+|.... .+.... -.+.|||.||...-
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr---Gl~~----~d~~aA~tGv~------etT~~~~--~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR---GLGH----EDEGAAPTGVV------ETTMEPT--PYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT---T--T----TSTTS--SSSH------SCCTS-E--EEE-SS-TTEEEEEE--GGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCC----CCcCcCCCCCC------cCCCCCe--eCCCCCCCCCeEEeCCCCCCC
Confidence 4699999999999999999994 3211 11111110000 0122222 222222 25999999998532
Q ss_pred HHHHHHH-----HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 169 TLEVERA-----LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 169 ~~~~~~~-----l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
......+ +...|..|++.+ ..+...+..+++.+.++|+|+.+|-+|+|.
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 2223333 445688777664 445677788889999999999999999995
No 338
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.69 E-value=2.3e-07 Score=93.95 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+....+|+|-|-. ...... -..+|.+|+|+|+.++...+.. ...+...--++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccc
Confidence 4578899999932 111111 1236899999999987653321 11122223389999999874
No 339
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.68 E-value=1.4e-07 Score=81.43 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=68.5
Q ss_pred CeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCC--cc
Q 004038 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (777)
Q Consensus 389 p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 464 (777)
||++.|..++..+ .|++..|||.+|++++||.|+..+.+...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHC
Confidence 6888999998888 8999999999999999999999998888899998754 378999999999986 5554 47
Q ss_pred cccceecc
Q 004038 465 ITGETLCD 472 (777)
Q Consensus 465 ~~GdtL~~ 472 (777)
.+|++||+
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 88999874
No 340
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=7.7e-08 Score=89.72 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=52.9
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCc-hHHHHHHHHHHHc----CCCEEEEEEccCCCCc
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQADKY----GVPRICFVNKMDRLGA 222 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~-~~~~~~~~~~~~~----~~p~iiviNKiD~~~~ 222 (777)
..+.+|||+|++.|...+....+.|=+.++++|-+..-. -..+..+.+++.+ +--++++.||.|+.+.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 468899999999999999999999999999999986433 2334455555442 4557889999998753
No 341
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.65 E-value=2.5e-07 Score=98.45 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=82.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~df 168 (777)
.||.++|..|.|||||+|.|+........ ...+.......+...+......+.-.+ ..+++|||||+.|.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED--------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS-----------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc--------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 58999999999999999999732111110 000000112223344444444444333 47889999998753
Q ss_pred H-------------HH-HHHHH-------------HhcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 T-------------LE-VERAL-------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 ~-------------~~-~~~~l-------------~~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
. .+ ...++ ...|++|+.++++ +|+.+.+.+.++.+... +++|.||.|.|..
T Consensus 77 i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~l 155 (281)
T PF00735_consen 77 IDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTL 155 (281)
T ss_dssp STHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEeccccc
Confidence 1 11 11111 1358999999986 78999999888887665 8899999999988
Q ss_pred Ccc-hHhHHHHHHHHhCC
Q 004038 221 GAN-FFRTRDMIVTNLGA 237 (777)
Q Consensus 221 ~~~-~~~~~~~i~~~l~~ 237 (777)
..+ .....+.|++.+..
T Consensus 156 t~~el~~~k~~i~~~l~~ 173 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEE 173 (281)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 643 44555566665543
No 342
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.3e-07 Score=89.37 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=86.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++.-.+.++|--|+|||||++.|- .++.+.-. -|...+...+...+..++-+|..||..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK-----dDrl~qhv----------------PTlHPTSE~l~Ig~m~ftt~DLGGH~q 76 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK-----DDRLGQHV----------------PTLHPTSEELSIGGMTFTTFDLGGHLQ 76 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc-----cccccccC----------------CCcCCChHHheecCceEEEEccccHHH
Confidence 445689999999999999999982 11111100 133334444556788999999999988
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHH----HHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQ----ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~----~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~ 236 (777)
-..-+..++..+|+++++||+.+.-.-+ .+..++. ..-.++|+++..||+|++++- ..++++-.++
T Consensus 77 Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~ 147 (193)
T KOG0077|consen 77 ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLG 147 (193)
T ss_pred HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHH
Confidence 7888889999999999999998643222 2222222 223589999999999999865 2344444443
No 343
>PTZ00258 GTP-binding protein; Provisional
Probab=98.61 E-value=2.3e-07 Score=102.33 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 153 (777)
.+...|+|+|.+|+|||||+|+|. +.....+. .+++|+....+.+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~n---------------~pftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC---KQQVPAEN---------------FPFCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh---cCcccccC---------------CCCCcccceEEEEecccchhhHHHHHcCCc
Confidence 455689999999999999999993 33222222 2455666665555554
Q ss_pred ---CeEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCC
Q 004038 154 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (777)
Q Consensus 154 ---~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~ 189 (777)
..++.|+||||... +.......++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23599999999753 4456788899999999999995
No 344
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=102.17 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+.|+++++|.+|+||||++|.+. ....++.+..+ +|...-.+.+.++-.++++|||||.-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vt------radvevqpYaF------------TTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVT------RADDEVQPYAF------------TTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccc------ccccccCCccc------------ccchhhhhhhhhheeeeeecCCcccc
Confidence 4567999999999999999998873 11112222222 24444445666677789999999987
Q ss_pred chHH------H--HHHHHHhc-CeEEEEEeCCCCCchHHH---HHHHHHHH--cCCCEEEEEEccCCCCc
Q 004038 167 DFTL------E--VERALRVL-DGAICLFDSVAGVEPQSE---TVWRQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~------~--~~~~l~~a-D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
|--. | .+.++... -+|+++.|-++-...... .++.-++. .+.|.|+|+||+|....
T Consensus 227 D~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc
Confidence 6311 1 33444443 357888888853322222 23333332 48999999999998764
No 345
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.57 E-value=1.7e-07 Score=99.05 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-----------------e
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----------------H 155 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~ 155 (777)
|+|+|.+|+|||||+|+|. +.....+. .+++|+....+.+.+.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~n---------------~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAAN---------------YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCcccc---------------ccccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 6899999999999999994 43322221 13445555544444433 2
Q ss_pred EEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 156 RINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 156 ~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
.+.++||||..+ +.......++.+|++++|||+.+
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 599999999753 34467778899999999999863
No 346
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.8e-06 Score=86.34 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.---||-++|.+|.|||||+|.|+.. ...+. +. .|...+-....+.+++....+..++ .++++|||||+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s-~v~~~-s~-------~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKS-HVSDS-SS-------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHH-HHhhc-cC-------CCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 33569999999999999999999732 11111 11 1111111111223333333344444 46899999999
Q ss_pred cchH--------------HHHHHHHH--------------hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEc
Q 004038 166 VDFT--------------LEVERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (777)
Q Consensus 166 ~df~--------------~~~~~~l~--------------~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNK 216 (777)
.|++ ++...+++ ..+++++.+.++ +...+-+.++++.+.+. +.++-||-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEee
Confidence 8752 12223332 246788888776 66788888888776654 678889999
Q ss_pred cCCCCcc-hHhHHHHHHHHhCCCce
Q 004038 217 MDRLGAN-FFRTRDMIVTNLGAKPL 240 (777)
Q Consensus 217 iD~~~~~-~~~~~~~i~~~l~~~~~ 240 (777)
.|-+..+ -....+.|++.|-.+.+
T Consensus 194 aDtlTleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 194 ADTLTLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCc
Confidence 9977643 33445566666654433
No 347
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.46 E-value=8.5e-07 Score=92.38 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~ 166 (777)
...+.|+++|.+|+|||||+++|. .+....+ .... -|.+........ .+..+.+.||-|+.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT-~Aal~p~-------drLF----------ATLDpT~h~a~Lpsg~~vlltDTvGFi 237 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALT-KAALYPN-------DRLF----------ATLDPTLHSAHLPSGNFVLLTDTVGFI 237 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHH-hhhcCcc-------chhh----------eeccchhhhccCCCCcEEEEeechhhh
Confidence 446799999999999999999995 1111111 0000 011111111111 45778999999986
Q ss_pred c-h-------HHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCCCE-------EEEEEccCCC
Q 004038 167 D-F-------TLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVPR-------ICFVNKMDRL 220 (777)
Q Consensus 167 d-f-------~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~p~-------iiviNKiD~~ 220 (777)
. + ...+..-+..+|.++.|+|.+++. ..|-..++.-+.+.++|- +=|=||+|..
T Consensus 238 sdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 238 SDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 3 1 123455567889999999999864 567777888889888862 2344666643
No 348
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.45 E-value=1.3e-06 Score=92.33 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=64.9
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee--ecCCccccchhhhhhccee---EeeeEEE----------
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGIT---ITSAATT---------- 149 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v--~~g~~~~d~~~~e~~~g~T---i~~~~~~---------- 149 (777)
+...+...|.|+|.+|+|||||+++|+.........+-+ +.++. .|.... +..|+. +......
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~-~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTV-NDAARI-RATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcH-HHHHHH-HhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 445678899999999999999999998553222222222 11222 132111 222221 1111000
Q ss_pred ---EEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 150 ---TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 150 ---~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+...+..+.||++-|..---.. .-+. .+.-+.|++..+|... .+++-......-++|+||+|+..
T Consensus 177 l~~L~~~~~d~liIEnvGnLvcPa~--fdlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPAS--FDLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHHHhhcCCcEEEEECCCCccCCCc--cchh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCc
Confidence 0112346778888884100000 0111 1334577777776421 11111223467799999999864
No 349
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.45 E-value=2.7e-07 Score=87.84 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+....++|+|..++||||++.+.. .|...+- +..+...|+... .+ .+...+.++.+|||.|..
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryC--kgifTkd---ykktIgvdfler----qi-------~v~~Edvr~mlWdtagqe 80 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKD---YKKTIGVDFLER----QI-------KVLIEDVRSMLWDTAGQE 80 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHh--ccccccc---cccccchhhhhH----HH-------HhhHHHHHHHHHHhccch
Confidence 3556789999999999999999996 3322110 000111222211 11 111234567899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHH--HcCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD--KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~--~~~~p~iiviNKiD~~~ 221 (777)
+|..-+..+++.|.+.+||+..++-..- .+.++.+... ...+|.++|-||+|+..
T Consensus 81 EfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 81 EFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred hHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 9999999999999999999998875432 2333333332 34799999999999875
No 350
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.44 E-value=3.7e-06 Score=96.41 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+.+...+|+++|.+|+|||||+|+|+..... .... ...++|. .......+.+..+++|||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf--~vss--------------~~~~TTr-~~ei~~~idG~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKF--STDA--------------FGMGTTS-VQEIEGLVQGVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccc--cccC--------------CCCCceE-EEEEEEEECCceEEEEECCCC
Confidence 3445679999999999999999999722110 0000 1123332 223334557889999999999
Q ss_pred cchH------HH----HHHHHH--hcCeEEEEEeCCC-CCchHHHHHHHHHHH-cC----CCEEEEEEccCCCC
Q 004038 166 VDFT------LE----VERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~------~~----~~~~l~--~aD~~ilVvda~~-g~~~~~~~~~~~~~~-~~----~p~iiviNKiD~~~ 221 (777)
.+.. .+ +...+. ..|++|+|+.... .....+...++.+.+ .| .-.|||+|..|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 8631 22 222333 3688888876542 222234445554433 22 35689999999874
No 351
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.4e-06 Score=92.04 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=95.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~d 167 (777)
-.++-++|..|.|||||+|.|+...- .++...+.......+..++......+.-++ .+++++||||+.|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l---------~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDL---------SGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhc---------cCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 46999999999999999999974311 011111222222233445555555554444 4688999999987
Q ss_pred hHHH--------------HHHHHH-------------hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 168 FTLE--------------VERALR-------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 168 f~~~--------------~~~~l~-------------~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
+... ...++. ..+++|+.|..+ +|+.+.+.+.++.+.. .+.+|-||-|.|.
T Consensus 92 ~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 92 AVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADT 170 (366)
T ss_pred cccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeecccc
Confidence 5221 222221 357888888876 8899999998877664 5889999999998
Q ss_pred CCcc-hHhHHHHHHHHhCCCceeEEe
Q 004038 220 LGAN-FFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~~~~~~~ 244 (777)
...+ .....+.|.+-+....+++..
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~ 196 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFD 196 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceec
Confidence 8754 555666777766665555443
No 352
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.4e-06 Score=78.13 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=76.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
-..+-.-.|+|..|+|||.|+..+....-...- + ..-|+......+...-...++.+|||.|+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadc--------------p--htigvefgtriievsgqkiklqiwdtagqe 71 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--------------P--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 71 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcC--------------C--cccceecceeEEEecCcEEEEEEeecccHH
Confidence 355778889999999999999988522111000 0 000111111111222234678999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHHcCCC---EEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~~~~p---~iiviNKiD~~~ 221 (777)
.|..-+..+++.+-++++|.|.+......-...| ..++..-.| ++++.||.|+..
T Consensus 72 rfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 72 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 9999999999999999999999865443333322 334444333 456779999754
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.40 E-value=1.4e-06 Score=84.66 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.......++.+|++|+|+|+.++...+...+.+.+...++|+++|+||+|+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 3445666778999999999998877776667666767789999999999985
No 354
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.39 E-value=2.6e-06 Score=73.40 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=64.1
Q ss_pred CeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc--CCC--cc
Q 004038 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GLK--DT 464 (777)
Q Consensus 389 p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~ 464 (777)
||++.|..++... |++..|||.+|++++||+|+..+.+...+|++|... ..++++|.|||.+++. +++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHC
Confidence 6778888877643 899999999999999999999998888899998654 3679999999999983 332 36
Q ss_pred cccceecc
Q 004038 465 ITGETLCD 472 (777)
Q Consensus 465 ~~GdtL~~ 472 (777)
.+|+.||+
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 78988874
No 355
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.30 E-value=2.7e-06 Score=84.48 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=72.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe---cCeEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDTPG~~ 166 (777)
...++|||...+|||+|+..+. ++.. +.+..+-+. +.-...+.. +...+.||||.|+.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t--~~~f----------------p~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT--TNAF----------------PEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQE 64 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec--cCcC----------------cccccCeEE-ccceEEEEecCCCEEEEeeeecCCCc
Confidence 4688999999999999987663 3311 111111000 111112222 23457899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchH--HHHHHHHHHHc--CCCEEEEEEccCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKY--GVPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~--~~~~~~~~~~~--~~p~iiviNKiD~~ 220 (777)
||..-..-++..+|.++++++..+..... ....+-.++.+ ++|+|+|.+|.|+.
T Consensus 65 dYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 65 DYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred ccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 99664445788999999999877654333 22233334433 79999999999987
No 356
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.26 E-value=4.9e-06 Score=71.79 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=64.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCC--Cccc
Q 004038 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTI 465 (777)
Q Consensus 390 ~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~ 465 (777)
|++.|.+++..++.|.+..|||.+|++++||++...+.+...+|++|... .+++++|.|||.+++ .++ +++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 35677788877888999999999999999999999988877888888643 367899999999988 333 2467
Q ss_pred ccceecc
Q 004038 466 TGETLCD 472 (777)
Q Consensus 466 ~GdtL~~ 472 (777)
+|++|++
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 8888763
No 357
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.24 E-value=6.9e-06 Score=70.52 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=62.1
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCCcccccc
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (777)
++-|..++.....|+...|||.+|++++||+|+..+.+...+|++|... ..+++.|.|||.+++ .+-+++.+|+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i~~G~ 77 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF----DGELDEAGAGESVTLTLEDEIDVSRGD 77 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC----CcEeCEEcCCCEEEEEECCccccCCCC
Confidence 4456666655556778999999999999999999998888899999754 367899999999988 3334478899
Q ss_pred eecc
Q 004038 469 TLCD 472 (777)
Q Consensus 469 tL~~ 472 (777)
+||.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 8873
No 358
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.23 E-value=5.6e-06 Score=83.36 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch-
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df- 168 (777)
--+|+++|.+.+|||||+..+. ...+...+. .-+|.+.....+.+++..|+++|.||...-
T Consensus 62 daRValIGfPSVGKStlLs~iT---~T~SeaA~y---------------eFTTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKIT---STHSEAASY---------------EFTTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhh---cchhhhhce---------------eeeEEEeecceEEecCceEEEecCccccccc
Confidence 3579999999999999999984 222222111 124677777788899999999999998653
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCC
Q 004038 169 ------TLEVERALRVLDGAICLFDSVAG 191 (777)
Q Consensus 169 ------~~~~~~~l~~aD~~ilVvda~~g 191 (777)
..++....+.||++++|.||+..
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 34467778999999999999975
No 359
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.19 E-value=5.9e-06 Score=71.97 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=62.7
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--CceeecceeEEeccCceeecceeecCCEEEE--cCCC--cc
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 464 (777)
++.|..++..++.|++..|||.+|++++||.|...+. +...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~v 77 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKREDV 77 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHHc
Confidence 4567777777888999999999999999999987653 456778888643 367899999999998 3442 37
Q ss_pred cccceeccC
Q 004038 465 ITGETLCDA 473 (777)
Q Consensus 465 ~~GdtL~~~ 473 (777)
.+|+.||++
T Consensus 78 ~rG~vl~~~ 86 (87)
T cd03697 78 ERGMVLAKP 86 (87)
T ss_pred CCccEEecC
Confidence 789999875
No 360
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.17 E-value=4.1e-05 Score=75.66 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=85.3
Q ss_pred EEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccch-hhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 95 IMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWM-EQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~-~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
.-+..|+||||++-.|... .|...-..+.+.+....++. ..+.....++. ..-...+.+||||+..+ .
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~------~~~~~d~viiD~p~~~~--~ 76 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLH------DVLAGDYILIDSPAGIE--R 76 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchh------hcccCCEEEEECCCCCc--H
Confidence 4458999999999998543 23222233334321112211 11111001110 00111799999998755 3
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcchHhHHHHHHHHhCCCc
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~~~~~~~~i~~~l~~~~ 239 (777)
....++..+|.+|+|+++...........++.+...+.+. .+|+|++|.......+..+.+++.++...
T Consensus 77 ~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v 146 (179)
T cd02036 77 GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHHhCCCE
Confidence 5677889999999999998776667777777777766664 58899998765545555677888777643
No 361
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.16 E-value=1.3e-05 Score=69.73 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=62.2
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCC--C--ceeecceeEEeccCceeecceeecCCEEEE--cCCC--
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--G--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~--~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 462 (777)
.+.|...+..++.|++..|||.+|++++||.++..+. + ...+|++|... ..++++|.|||.+++ .+++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCHH
Confidence 4567777777888999999999999999999999876 3 56788888643 477999999999988 3433
Q ss_pred cccccceecc
Q 004038 463 DTITGETLCD 472 (777)
Q Consensus 463 ~~~~GdtL~~ 472 (777)
++.+|+.||+
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 3778888863
No 362
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.14 E-value=4.1e-05 Score=71.56 Aligned_cols=118 Identities=21% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccch--hhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWM--EQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~--~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
.+.-.|+++|.-++|||.+++.|++-...... ...+ +.-|.. ..|..|| -...+.|.||.|.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~--e~~p--TiEDiY~~svet~rg------------arE~l~lyDTaGl 70 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGT--ELHP--TIEDIYVASVETDRG------------AREQLRLYDTAGL 70 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCC--cccc--chhhheeEeeecCCC------------hhheEEEeecccc
Confidence 44568999999999999999999854332211 0000 111111 0112222 1357899999999
Q ss_pred cchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHH-HH----cCCCEEEEEEccCCCC
Q 004038 166 VDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQA-DK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~-~~----~~~p~iiviNKiD~~~ 221 (777)
.+...+ -..++..+|+.+||.+..+.-.-|..+.+..- .+ ..+|+++..||.|+..
T Consensus 71 q~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 71 QGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred cCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 888444 55677889999999999987666665555432 22 3589999999999863
No 363
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.13 E-value=5.5e-05 Score=75.14 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=56.6
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
..+.+.++|||+... .....++..+|.+++|+.+...........++.+++.++|..+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 568999999997643 45677889999999999998766667778888888899999999999997543
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=9.9e-06 Score=89.04 Aligned_cols=128 Identities=21% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCCccccch---hhhh------hcceeEeeeEEE-----
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTATMDWM---EQEQ------ERGITITSAATT----- 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~~~~d~~---~~e~------~~g~Ti~~~~~~----- 149 (777)
.+..+++++|.+|+||||++..|.... |. .+++-+. .|.. ..|+ ..|+.+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit-----~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~ 208 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLT-----TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL 208 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEe-----cccccccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence 445799999999999999999997432 21 1222111 1111 1111 123333222111
Q ss_pred --EEecCeEEEEEeCCCCc---chHHHHHHHHHhcC---eEEEEEeCCCCCchHHHHHHHHHHHcCCC-------EEEEE
Q 004038 150 --TYWNKHRINIIDTPGHV---DFTLEVERALRVLD---GAICLFDSVAGVEPQSETVWRQADKYGVP-------RICFV 214 (777)
Q Consensus 150 --~~~~~~~i~liDTPG~~---df~~~~~~~l~~aD---~~ilVvda~~g~~~~~~~~~~~~~~~~~p-------~iivi 214 (777)
-.+.++.+.||||||.. ++..+....+..++ -.+||++++.+....+..++.+....++| .=+++
T Consensus 209 ~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 209 ALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred HHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 12356789999999986 34445555554443 45999999987766665555554444443 25788
Q ss_pred EccCCCC
Q 004038 215 NKMDRLG 221 (777)
Q Consensus 215 NKiD~~~ 221 (777)
||+|-..
T Consensus 289 TKlDEt~ 295 (374)
T PRK14722 289 TKLDEAS 295 (374)
T ss_pred eccccCC
Confidence 9999653
No 365
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.12 E-value=1.9e-05 Score=75.98 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=40.7
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD 218 (777)
.++.+.||||||.. ......+..||.+|+|+....+-. ..+....-...--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~----y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDD----IQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhH----HHHhhhhHhhhcCEEEEeCCC
Confidence 36789999999965 344569999999999997773222 222222223345589999998
No 366
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=6.9e-06 Score=81.91 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=83.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~d 167 (777)
..+.|.++|.+|+|||++=..++..--+ ..-+..|-||+....++.+-| ..+++||+.|+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a-----------------~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIA-----------------RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhh-----------------hhhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 3578999999999999987766511100 011234557777666665544 7899999999998
Q ss_pred hHHHHHH-----HHHhcCeEEEEEeCCCCCchHHHH----HHHHHHHc--CCCEEEEEEccCCCCcchHh
Q 004038 168 FTLEVER-----ALRVLDGAICLFDSVAGVEPQSET----VWRQADKY--GVPRICFVNKMDRLGANFFR 226 (777)
Q Consensus 168 f~~~~~~-----~l~~aD~~ilVvda~~g~~~~~~~----~~~~~~~~--~~p~iiviNKiD~~~~~~~~ 226 (777)
|.+...+ .++..+..+.|+|+...-...+.. .++.+.+. ...+.+.+.|+|+...+..+
T Consensus 66 fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 66 FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence 8766554 567889999999998654444433 44444443 45567889999998766443
No 367
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.08 E-value=1.4e-05 Score=78.47 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecC-CccccchhhhhhcceeEee-eEE-EE--E-------------
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITS-AAT-TT--Y------------- 151 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~~g~Ti~~-~~~-~~--~------------- 151 (777)
.+.|.+.|.+|||||||+.+++.......+++-+... .+..|.....+..|..+.. ... .+ .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5799999999999999999997655433333322111 1112222222212221111 111 01 0
Q ss_pred e-cCeEEEEEeCCCCcchHHHHHHHHHhcC-eEEEEEeCCCCCchHHH--HHHHHHHHcCCCEEEEEEccCCCC
Q 004038 152 W-NKHRINIIDTPGHVDFTLEVERALRVLD-GAICLFDSVAGVEPQSE--TVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 152 ~-~~~~i~liDTPG~~df~~~~~~~l~~aD-~~ilVvda~~g~~~~~~--~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
| ....+.||.+.| .+... .+....| .-|+|+|..+|..---+ -.+ -.--++||||.|+..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~i------~~aDllVInK~DLa~ 156 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPGI------FKADLLVINKTDLAP 156 (202)
T ss_pred cCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCce------eEeeEEEEehHHhHH
Confidence 0 124677888887 21111 1122335 88999999988532111 000 012378999999863
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.06 E-value=3.1e-05 Score=86.54 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCC-ccccchhh-hhhcceeEeeeEEEE-------------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAATTT------------- 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~-~~~d~~~~-e~~~g~Ti~~~~~~~------------- 150 (777)
+...|+++|..|+||||++..|.... |........|... ...++... ....++.+......-
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999999996432 3221122212110 11122111 112333332111000
Q ss_pred EecCeEEEEEeCCCCcch----HHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 151 YWNKHRINIIDTPGHVDF----TLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
...++.+.||||||.... ..++....+ ..|-++||+|+..|... ....+.+.+.--+.-+|+||+|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 013679999999997643 333333322 35789999999877433 333344443334567899999964
No 369
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.06 E-value=6.4e-06 Score=80.10 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+..+|+++|.+|+|||||+|+|+ +.... ......|.|.......+ +..+.|+||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~---~~~~~--------------~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLR---SKKVC--------------KVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHh---cCCce--------------eeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 35689999999999999999996 21111 11223566665443332 345899999994
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.06 E-value=2.6e-06 Score=82.40 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+.++++|++|||||||+|+|+... .-+.+.+.. ...+-+++|.......+ .....+|||||+.+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~--~~~t~~is~--------~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA--KQKTGEISE--------KTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc--chhhhhhhc--------ccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 689999999999999999997221 111222110 11233445555444444 234689999998775
No 371
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.04 E-value=2e-05 Score=76.69 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
++.++..+|.+++|+|+.++.......+.+.+... ++|+++|+||+|+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 57889999999999999988766666676666553 489999999999853
No 372
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.04 E-value=3.8e-05 Score=75.90 Aligned_cols=128 Identities=16% Similarity=0.246 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCC-ccccchh-hhhhcceeEeeeEEEE-------------Eec
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATTT-------------YWN 153 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~-~~~d~~~-~e~~~g~Ti~~~~~~~-------------~~~ 153 (777)
.++++|.+|+||||++-.+.... |.....-..+... ...+... .-...|+.+....... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999998886432 2111111111110 0000000 0112233222211100 123
Q ss_pred CeEEEEEeCCCCcchHHHHHHH----H--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERA----L--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~----l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
++.+.++||||...+..+.... . ...|.+++|+|+..+... .....+..+..++ .-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 5679999999986432222222 2 237999999999754322 2333444445553 567889999764
No 373
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=5.2e-05 Score=80.38 Aligned_cols=133 Identities=23% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccch-------hhhhhcceeEeeeEE-EEE----e--
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWM-------EQEQERGITITSAAT-TTY----W-- 152 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~-------~~e~~~g~Ti~~~~~-~~~----~-- 152 (777)
-...+-|.++|.-..||||+++.|+.+.----++|. ..++|++ .++.-.|.+.....- .|. +
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGp----EPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGP----EPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCC----CCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 356678999999999999999999854322112221 0111211 122223332222100 000 0
Q ss_pred -----------c---CeEEEEEeCCCCc-----------chHHHHHHHHHhcCeEEEEEeCCC-CCchHHHHHHHHHHHc
Q 004038 153 -----------N---KHRINIIDTPGHV-----------DFTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKY 206 (777)
Q Consensus 153 -----------~---~~~i~liDTPG~~-----------df~~~~~~~l~~aD~~ilVvda~~-g~~~~~~~~~~~~~~~ 206 (777)
. =..+++|||||.- ||..-....+..+|.+++++|+.. .+...+.+++..++..
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 0 1369999999963 688888888999999999999984 4678889999999988
Q ss_pred CCCEEEEEEccCCCCcc
Q 004038 207 GVPRICFVNKMDRLGAN 223 (777)
Q Consensus 207 ~~p~iiviNKiD~~~~~ 223 (777)
.-.+=||+||.|....+
T Consensus 211 EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQ 227 (532)
T ss_pred cceeEEEeccccccCHH
Confidence 88999999999987643
No 374
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.02 E-value=2e-05 Score=77.86 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCCCc-chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 162 TPG~~-df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
-|||. ....++...+..+|.+++|+|+.++.......+++.+ .+.|+++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 47774 4677889999999999999999987766555554443 368999999999985
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.01 E-value=6e-06 Score=91.37 Aligned_cols=131 Identities=10% Similarity=0.141 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
+++.++|.+|+|||||+|+|+........ .......+|+|.......+ +..+.++||||.... .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~------------~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~-~ 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD------------VITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS-H 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc------------eeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh-h
Confidence 69999999999999999999854321111 0112234677876654433 234689999998643 1
Q ss_pred HHHHHH-----------HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc-chHhHHHHHHHHhCC
Q 004038 171 EVERAL-----------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (777)
Q Consensus 171 ~~~~~l-----------~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~-~~~~~~~~i~~~l~~ 237 (777)
++...+ +......+.+|....+.......+..+...+..+.++++|-+.... +.++..+-+++.+|.
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 222111 2235566666665443322222222233334556777788776653 445555555665554
No 376
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.00 E-value=9.3e-06 Score=80.22 Aligned_cols=58 Identities=16% Similarity=0.338 Sum_probs=40.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
....+|+++|.+|+|||||+|+|+ |... ......+|+|.......+ +..+.|+||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~---~~~~--------------~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLK---RSRA--------------CNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHh---Cccc--------------ceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 344689999999999999999996 2211 112234677776554443 246899999994
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.98 E-value=3.8e-05 Score=74.85 Aligned_cols=125 Identities=21% Similarity=0.149 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc-CCcceeeeeecCCccccchhhhhhc--ceeEeeeEEEEE-----------------
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQER--GITITSAATTTY----------------- 151 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~-g~~~~~g~v~~g~~~~d~~~~e~~~--g~Ti~~~~~~~~----------------- 151 (777)
.+.++|..|+|||||+++++... +.....-.-+.|....|........ -+.+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 57899999999999999998542 1111111112233333322221111 111111111111
Q ss_pred --ecCeEEEEEeCCCCcchHHHH--------HHHHHhcCeEEEEEeCCCCCchH--HHHHHHHHHHcCCCEEEEEEccCC
Q 004038 152 --WNKHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 152 --~~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~ilVvda~~g~~~~--~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
.....+.+|||||..+-.... ......+|.++.++|+....... ......++. ---++++||+|+
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~dl 158 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTDL 158 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEecccC
Confidence 023578999999997532222 22334579999999997543321 112223333 234789999995
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.94 E-value=9.1e-05 Score=78.68 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeeeecCCccc---cch-hhhhhcceeEeeeEE-----E--------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATM---DWM-EQEQERGITITSAAT-----T-------- 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v~~g~~~~---d~~-~~e~~~g~Ti~~~~~-----~-------- 149 (777)
.+.+.|+++|.+|+||||++..|....... .++.-++...... +.. ......|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999986433211 1221111100000 000 001233333211100 0
Q ss_pred EEecCeEEEEEeCCCCcchHHH----HHH---HHH-----hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 150 TYWNKHRINIIDTPGHVDFTLE----VER---ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~df~~~----~~~---~l~-----~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
....++.+.||||||....... ... ... ..|.+++|+|+..|- .+........+.--+.-+|+||+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlTKl 227 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILTKL 227 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEEcc
Confidence 0124688999999998643222 222 222 279999999998643 22222232222112457899999
Q ss_pred CCC
Q 004038 218 DRL 220 (777)
Q Consensus 218 D~~ 220 (777)
|-.
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 964
No 379
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.94 E-value=2.9e-05 Score=82.88 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCCCc-chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 162 TPG~~-df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
-|||. ....++...+..+|.+|+|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 48886 4567889999999999999999987776665555554 368999999999985
No 380
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.91 E-value=3.6e-05 Score=77.32 Aligned_cols=57 Identities=14% Similarity=-0.085 Sum_probs=42.4
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 333346788888999999999999999765444444422 235789999999999864
No 381
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=2.2e-05 Score=76.13 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
....++++|..+.||||++++.+ +|........ .-|..+......-+.+..+++.|||.|...|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~a--------------t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPA--------------TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecccC--------------cceeEEeeeeeecccCcEEEEeeecccceee
Confidence 46789999999999999999997 5543332111 0122222221111223478999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHH--HHH-HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR--QAD-KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~--~~~-~~~~p~iiviNKiD~~~ 221 (777)
......+.-..-++++++|....++-+...-|. .++ ..++|++++.||+|-..
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 877777777889999999999776655544332 222 24689999999999654
No 382
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.90 E-value=1.3e-05 Score=80.59 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=42.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
..+++++|.+|+|||||+|+|+.......+ ..........+|+|.......+. ..+.+|||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~---------~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK---------LKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc---------cccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 358999999999999999999743211100 00001123346788887766553 25899999995
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.89 E-value=0.00011 Score=79.77 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc-ee--eeeecCCc-cccch-hhhhhcceeEeeeEEE-------------E
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY-KI--GEVHEGTA-TMDWM-EQEQERGITITSAATT-------------T 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~-~~--g~v~~g~~-~~d~~-~~e~~~g~Ti~~~~~~-------------~ 150 (777)
+...|+++|.+|+||||++..|........ ++ ...+.... ..+.. .....+++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999964322111 11 11111000 00011 1122334433221100 0
Q ss_pred EecCeEEEEEeCCCCcch----HHHHHHHHH--------hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccC
Q 004038 151 YWNKHRINIIDTPGHVDF----TLEVERALR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~~~l~--------~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD 218 (777)
...++.+.||||||.... ..+.....+ ..+..++|+||+.|..... . .....+.--+.-+|+||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~-a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-Q-AKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-H-HHHHHhhCCCCEEEEECCC
Confidence 125678999999997542 334444333 2467899999997643222 1 2222221124478999999
Q ss_pred CC
Q 004038 219 RL 220 (777)
Q Consensus 219 ~~ 220 (777)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 43
No 384
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.88 E-value=1.9e-05 Score=76.70 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=40.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
....+++++|++|+|||||+|+|+..... . ....+|+|.......+ +..++++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~--~---------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL--K---------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc--c---------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 35678999999999999999999722111 1 1223566666655443 256999999994
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=97.84 E-value=2.2e-05 Score=86.18 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
.++|+|.+|+|||||+|+|+.. .....|.+.. ...+-+++|.......+..+ ..||||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~--~~~~t~~is~--------~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE--AEILVGDVSD--------NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc--cceeeccccC--------cCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 5899999999999999999721 1222232210 12234556666665555333 3599999998753
No 386
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.83 E-value=3.1e-05 Score=78.22 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeeeecCCccccchh---hh------hhcceeEeeeEE------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWME---QE------QERGITITSAAT------------ 148 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v~~g~~~~d~~~---~e------~~~g~Ti~~~~~------------ 148 (777)
+.|+++|.+|+||||.+-.|....... .+++-+ ..|.+. .| +.-|+.......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li-----s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI-----SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-----EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee-----cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 578999999999999999996443211 111111 111111 11 122332211100
Q ss_pred -EEEecCeEEEEEeCCCCcchH----HHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 149 -TTYWNKHRINIIDTPGHVDFT----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 149 -~~~~~~~~i~liDTPG~~df~----~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+..+++.+.||||||..... .++...+. ..+-+++|+|++.+..... .........++. =++++|+|...
T Consensus 77 ~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDETA 154 (196)
T ss_dssp HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSSS
T ss_pred HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCCC
Confidence 001134679999999976543 33333332 3578999999998754332 344444444444 55699999753
No 387
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.83 E-value=8.4e-05 Score=83.49 Aligned_cols=117 Identities=17% Similarity=0.052 Sum_probs=75.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+-.+|+++|..|+|||||+-+|+...-...-. . +-.-++|-. .+.-......++||+--.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-------~--------rl~~i~IPa---dvtPe~vpt~ivD~ss~~~ 68 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-------R--------RLPRILIPA---DVTPENVPTSIVDTSSDSD 68 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccccc-------c--------cCCccccCC---ccCcCcCceEEEecccccc
Confidence 445689999999999999999997432211100 0 011233321 1222345589999997776
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCc--hHHHHHHHHHHH-----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVE--PQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~--~~~~~~~~~~~~-----~~~p~iiviNKiD~~~~ 222 (777)
-.......++.||.+.+|.+.++.-+ .-...++=++++ .++|+|+|.||+|....
T Consensus 69 ~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 69 DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 56667889999999999998776322 112222333333 46999999999997653
No 388
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00014 Score=82.96 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee-------ee--ecCC---ccccchh---hhhhcc---e-------e
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------EV--HEGT---ATMDWME---QEQERG---I-------T 142 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g-------~v--~~g~---~~~d~~~---~e~~~g---~-------T 142 (777)
+..-.|+|.|++++||||++|+|++..-.-..+| .| .+|. ..++-.+ .....+ . .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3456899999999999999999986532111111 11 0111 0011100 000000 0 1
Q ss_pred EeeeEEEEEecC-------eEEEEEeCCCCc---chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-E
Q 004038 143 ITSAATTTYWNK-------HRINIIDTPGHV---DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-I 211 (777)
Q Consensus 143 i~~~~~~~~~~~-------~~i~liDTPG~~---df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-i 211 (777)
-..+...+.|+. ..+.++|.||.. .+...+......+|..|+|+.|-...+.....++..+.+. +|. +
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 122333444532 268999999975 3455566677889999999999887777777777777666 555 5
Q ss_pred EEEEccCCCCc
Q 004038 212 CFVNKMDRLGA 222 (777)
Q Consensus 212 iviNKiD~~~~ 222 (777)
|+.||.|....
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 56688897654
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=2e-05 Score=83.19 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=42.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+++|++|+|||||+|+|.- ....+.|++.. ...+-+++|.......+...+ .+|||||+..|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p--~~~~~t~eIS~--------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP--ELNQKTGEISE--------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc--hhhhhhhhhcc--------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 4789999999999999999962 11122222211 122456667777666665344 68999999764
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=97.79 E-value=0.0019 Score=72.87 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCCc-cccchh-hhhhcceeEeeeEEE-----E-------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWME-QEQERGITITSAATT-----T------- 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~~-~~d~~~-~e~~~g~Ti~~~~~~-----~------- 150 (777)
+...|.++|.+|+||||++-.|.... |........|.... ..+... .-...|+.+...... +
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45788999999999999888875422 32222222221110 001110 112233332211100 0
Q ss_pred -EecCeEEEEEeCCCCcc----hHHHHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 151 -YWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 151 -~~~~~~i~liDTPG~~d----f~~~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
...++.+.||||||... ...+..... ...|.+++|+|+..| .......+...+ .+++ -+|+||+|-..
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~- 254 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDA- 254 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 11357899999999643 222322222 245788999999754 222233333322 3433 57889999532
Q ss_pred chHhHHHHHHHHhCC
Q 004038 223 NFFRTRDMIVTNLGA 237 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (777)
. .-..-++...++.
T Consensus 255 r-gG~alsi~~~~~~ 268 (433)
T PRK10867 255 R-GGAALSIRAVTGK 268 (433)
T ss_pred c-ccHHHHHHHHHCc
Confidence 1 1224455556664
No 391
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.78 E-value=0.00019 Score=62.05 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=58.9
Q ss_pred EEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC---ceeecceeEEeccCceeecceeecCCEEEE--cCCCcccc
Q 004038 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (777)
Q Consensus 392 ~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~ 466 (777)
+.|.+++.....|.++.+||-+|++++|+.+...+.+ ..-+|.+|... ..+++++.+|+-|+| .+++++..
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCC
Confidence 3444555445668999999999999999999998887 44577777654 477999999999988 46667888
Q ss_pred ccee
Q 004038 467 GETL 470 (777)
Q Consensus 467 GdtL 470 (777)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9876
No 392
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.77 E-value=3e-05 Score=73.97 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..++++|.+|+|||||+|+|+ +..... .....|.|.......+ + ..+.+|||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~---~~~~~~--------------~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALV---GKKKVS--------------VSATPGKTKHFQTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCcee--------------eCCCCCcccceEEEEe--C-CCEEEEECCCcC
Confidence 389999999999999999996 211111 1112344444433333 2 268999999974
No 393
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.77 E-value=7.6e-05 Score=72.41 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCCchHHHHHH-HHHHHcCCCEEEEEEccCCCC
Q 004038 180 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~iiviNKiD~~~ 221 (777)
|.+|+|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999987666655554 466677899999999999853
No 394
>PRK14974 cell division protein FtsY; Provisional
Probab=97.76 E-value=0.00016 Score=78.78 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeeeecCCcc----ccchh-hhhhcceeEeeeEEE-------------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTAT----MDWME-QEQERGITITSAATT------------- 149 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v~~g~~~----~d~~~-~e~~~g~Ti~~~~~~------------- 149 (777)
+.+.|+++|.+|+||||++..|....... .+.+-+. +.++ .+... .-..-|+.+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 46789999999999999888886432111 1111111 1110 00111 111223322111000
Q ss_pred EEecCeEEEEEeCCCCcc----hHHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 150 TYWNKHRINIIDTPGHVD----FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~d----f~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
....++.+.||||||... +..+.....+ ..|..++|+|+..|- ...+..+...+.--.--+++||+|..
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 011356799999999763 3334333332 358999999998753 22222222222112357889999974
No 395
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.74 E-value=3.4e-05 Score=80.73 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
..++++|++|+|||||+|+|+... ..+.|++.. ...+.+++|.......+ .+ ..++||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~--~~~t~~i~~--------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV--KQQVNDISS--------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh--hccccceec--------cCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 478999999999999999997321 111222110 01223456666666555 22 379999998764
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.74 E-value=0.00019 Score=80.92 Aligned_cols=130 Identities=18% Similarity=0.257 Sum_probs=69.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeee--ecCCc-cccchh-hhhhcceeEeeeEEEE-----------E
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEV--HEGTA-TMDWME-QEQERGITITSAATTT-----------Y 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v--~~g~~-~~d~~~-~e~~~g~Ti~~~~~~~-----------~ 151 (777)
.+...|.++|.+|+||||++..|....... .+..-+ +.... ..+... .....|+.+......- .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456789999999999999999986432211 122111 11100 001000 1112233222111000 0
Q ss_pred ecCeEEEEEeCCCCcchHHHH------HHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCC
Q 004038 152 WNKHRINIIDTPGHVDFTLEV------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~------~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~ 220 (777)
...+.+.+|||||........ ...+..+|.+++|+|+..|. ......+.... .+++ -+|+||+|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 134589999999976543332 23345679999999998862 22222222221 2444 5788999953
No 397
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.73 E-value=0.00038 Score=66.25 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred EEeCCCCCHHHHHHHHHHhcC---CcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 95 IMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~~g---~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
.-|..|+||||+.-.|..... ...-..+.+.+.. .+ .+.+.++|||+..+ ..
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-------------~~----------~yd~VIiD~p~~~~--~~ 59 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-------------NL----------DYDYIIIDTGAGIS--DN 59 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-------------CC----------CCCEEEEECCCCCC--HH
Confidence 446789999999988864422 1111111111100 00 16799999998654 45
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCCcchHhHHHHHHH
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIVT 233 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~~~~~~~~~~i~~ 233 (777)
....+..+|.+++|+++...-...+...++.+.+. ..+..+|+|+++.. .+.+++.+.+.+
T Consensus 60 ~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~~ 122 (139)
T cd02038 60 VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLSN 122 (139)
T ss_pred HHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHHH
Confidence 57889999999999999865555556666666443 35667999999754 233344444443
No 398
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.72 E-value=0.00025 Score=73.19 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=54.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+...|+|+|..++|||||+|+|+.... .-..+.-. ....+|+-+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~-~f~~~~~~----------~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLS-GFDVMDTS----------QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCC-CeEecCCC----------CCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 4567899999999999999999972210 11111100 1111233222211110 1357899999999865
Q ss_pred h------HHHHHHHHHh--cCeEEEEEeCCC
Q 004038 168 F------TLEVERALRV--LDGAICLFDSVA 190 (777)
Q Consensus 168 f------~~~~~~~l~~--aD~~ilVvda~~ 190 (777)
. ......++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 3 2224455555 899999888763
No 399
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.71 E-value=0.00028 Score=76.69 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc-CCcceeeeeecCCccccchhhhhhc--ceeEeeeEEEEEec-----------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQER--GITITSAATTTYWN----------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~-g~~~~~g~v~~g~~~~d~~~~e~~~--g~Ti~~~~~~~~~~----------- 153 (777)
++++..+|.|..|+|||||+|+|+... |....+-.-+.|..-.|..-.+... =.++...+..+...
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 357788999999999999999998652 2111111113333333432222111 12233333333221
Q ss_pred --------CeEEEEEeCCCCcchHHHHHHHH--------HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 154 --------KHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 154 --------~~~i~liDTPG~~df~~~~~~~l--------~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
.....+|.|-|..+-..-..... -..|++|.|||+......... .-....+...--++++||+
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~AD~IvlnK~ 160 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADRILLTKT 160 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHhCCEEEEecc
Confidence 24578999999987433332211 124899999999864332211 1111123333458999999
Q ss_pred CCCCcchHhHHHHHH
Q 004038 218 DRLGANFFRTRDMIV 232 (777)
Q Consensus 218 D~~~~~~~~~~~~i~ 232 (777)
|+.... +++.+.++
T Consensus 161 Dl~~~~-~~~~~~l~ 174 (318)
T PRK11537 161 DVAGEA-EKLRERLA 174 (318)
T ss_pred ccCCHH-HHHHHHHH
Confidence 998643 34444443
No 400
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.70 E-value=0.00042 Score=71.88 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=75.6
Q ss_pred EEEEEe-CCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccchhhhhhcce-----eEeeeE---------EEEEec
Q 004038 92 NIGIMA-HIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGI-----TITSAA---------TTTYWN 153 (777)
Q Consensus 92 nI~iiG-~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~~~e~~~g~-----Ti~~~~---------~~~~~~ 153 (777)
.|++.+ ..|+||||+.-.|... .|......+.|++...+.|.......+. ...... .....+
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 82 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQ 82 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhC
Confidence 455554 4799999999888533 3433334555666655555432211110 000000 001124
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH------HcCCCEEEEEEccC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMD 218 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~------~~~~p~iiviNKiD 218 (777)
++.+.||||||+.+ ..+..++..+|.+|+.+.++.-....+.+.+..+. ..++|..+++|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 68999999999875 56777899999999999887544434444443322 24778889999997
No 401
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.68 E-value=0.00021 Score=66.97 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=78.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
...|+++|..-.|||||+-.... +.. | ...++..|+.......++.-....+.+||..|..+|.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~--~~~-------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQ--NEY-------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEEeecccccCceeeehhhhc--chh-------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 36899999999999999877641 100 0 1112233433322223332234567899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHcCCCE--EEEEEccCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPR--ICFVNKMDRL 220 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~--iiviNKiD~~ 220 (777)
....-+...+-++++++|-+...+-.. .+..++++..+... |+|.+|.|..
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 988888889999999999987655444 34557888776554 5778998864
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00034 Score=79.51 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=70.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC---cceeeeeecCCccc---cchh-hhhhcceeEeeeEEE------E-Eec
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEVHEGTATM---DWME-QEQERGITITSAATT------T-YWN 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~---~~~~g~v~~g~~~~---d~~~-~e~~~g~Ti~~~~~~------~-~~~ 153 (777)
++..+|+|+|.+|+||||++..|....-. ..+..-++..+... +... ....-|+.+...... + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34579999999999999999998643111 11111111100000 0000 001122222211100 0 114
Q ss_pred CeEEEEEeCCCCcchHHHHH---HHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHH
Q 004038 154 KHRINIIDTPGHVDFTLEVE---RALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTR 228 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~---~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~ 228 (777)
++.+.||||||......... ..+. .....++|+++..+..... ++++.+... .+.-+|+||+|... .+-.++
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt~-~lG~aL 504 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDETG-RFGSAL 504 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCcc-chhHHH
Confidence 67899999999754322211 1111 1245688888886543333 344444433 46679999999743 343333
Q ss_pred H
Q 004038 229 D 229 (777)
Q Consensus 229 ~ 229 (777)
.
T Consensus 505 s 505 (559)
T PRK12727 505 S 505 (559)
T ss_pred H
Confidence 3
No 403
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.66 E-value=0.00011 Score=78.37 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
...+++++|.+|+|||||+|+|. +.... ......|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~---~~~~~--------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA---GKKVA--------------KVGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh---CCCcc--------------ccCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 45689999999999999999996 21110 11123566666544333 236899999998
No 404
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.66 E-value=0.00016 Score=79.26 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=55.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcc-eeeeeecCCccccchhhhhhcceeEeeeEEEEEe-----------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~-~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~----------------- 152 (777)
.+++|+|.+|+|||||+|+|. +... ..+.. + ..|+....+.+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT---~~~~~~~a~y-p--------------ftTi~p~~g~v~v~d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATT---NLLGNEAANP-P--------------FTTIEPNAGVVNPSDPRLDLLAIYIKPEKV 64 (368)
T ss_pred ceEEEECCCCCChHHHHHHHh---CCCccccCCC-C--------------CCCCCCceeEEEechhHHHHHHHHhCCcCc
Confidence 579999999999999999994 3322 22111 1 1122222222222
Q ss_pred cCeEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 153 ~~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
....+.++|.||... +.......++.+|++++|||+.+
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 124689999999764 55678889999999999999963
No 405
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.66 E-value=0.00011 Score=78.93 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=45.9
Q ss_pred CCCCc-chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 162 TPG~~-df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
-|||. .-..++...+..+|++|+|+|+..+.......+.+.+. +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 58885 34677889999999999999999887766655544443 79999999999985
No 406
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=4.9e-05 Score=83.43 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=39.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
.++|+|.+|+|||||+|+|+... ....+.+.. ...+-+++|.......+.- + ..||||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~--~~~t~~vs~--------~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV--ELRVGKVSG--------KLGRGRHTTRHVELFELPN-G--GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc--ccccccccC--------CCCCCCCcCceeEEEECCC-C--cEEEeCCCcccc
Confidence 58999999999999999997221 111222110 1123445666665444422 2 379999998754
No 407
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=8.3e-05 Score=73.41 Aligned_cols=58 Identities=21% Similarity=0.137 Sum_probs=38.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
....+++++|.+|+|||||+|+|..... .. .....|+|.......+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~--~~---------------~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV--AK---------------VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc--ee---------------ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3446899999999999999999962111 00 11123556655544443 56899999996
No 408
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00012 Score=78.96 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEE-----------EecCeEEEE
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-----------YWNKHRINI 159 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~-----------~~~~~~i~l 159 (777)
.+++|+|-||+|||||+|+|..... ..++. .+.-.|...|+..-.. ..+ .+-...+.|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a---~~aNY-------PF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~ 71 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA---EIANY-------PFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEF 71 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc---cccCC-------CcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEE
Confidence 5799999999999999999953221 11110 0000111111111100 000 011246889
Q ss_pred EeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 160 IDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 160 iDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
+|.+|... +..+.+.-+|.+|+++.|||+.+
T Consensus 72 vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 72 VDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 99999763 56778899999999999999984
No 409
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.60 E-value=0.0001 Score=79.09 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=40.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|.+|+|||||+|+|. +.... ......|+|.......+ +..+.|+||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~---~~~~~--------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLA---GKKIA--------------KTGNRPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHh---cCCcc--------------ccCCCCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 345689999999999999999996 21110 11123577776654332 34689999999753
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.00049 Score=69.61 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=47.9
Q ss_pred eEEEEEeCC-CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcC-CCEEEEEEccCCC
Q 004038 155 HRINIIDTP-GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (777)
Q Consensus 155 ~~i~liDTP-G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~iiviNKiD~~ 220 (777)
+.+.++||= |..-|. ....+.+|.+|+|+|++..-....+++-+++.+.+ .++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 567777773 444443 23356789999999999776777778888889999 6777899999965
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00033 Score=76.82 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC-CcceeeeeecCCc---cccchh-hhhhcceeEeeeEEE---------EE-e
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTA---TMDWME-QEQERGITITSAATT---------TY-W 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g-~~~~~g~v~~g~~---~~d~~~-~e~~~g~Ti~~~~~~---------~~-~ 152 (777)
.+.+.|+++|.+|+||||++..|..... ...+.+-++..+. ..+... .-..-|+.+...... +. .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 3457999999999999999999964321 1112221111100 000000 001122322211000 00 0
Q ss_pred cCeEEEEEeCCCCcc----hHHHHHHHHHh--cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 153 NKHRINIIDTPGHVD----FTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 153 ~~~~i~liDTPG~~d----f~~~~~~~l~~--aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.++.+.||||||... ...+....+.. .|.++||+|++.+-. ....+++.....++ -=++++|+|-..
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 146899999999753 23444444432 477899999875322 22334444443222 357899999654
No 412
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.55 E-value=0.00032 Score=69.06 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=82.6
Q ss_pred EEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 95 IMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 95 iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
.-+..|+||||+.-.|... .|...-..+.|.+.....+...+....-.+......+...++.+.++|||+... ..
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~--~~ 82 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG--DE 82 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc--HH
Confidence 4466899999999888543 343333333333332221110000000000000001112468899999999753 33
Q ss_pred HHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcc--------hHhHHHHHHHHhCC
Q 004038 172 VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--------FFRTRDMIVTNLGA 237 (777)
Q Consensus 172 ~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~--------~~~~~~~i~~~l~~ 237 (777)
....+ ..+|.+|+|+.+...-.......++.+++.+.+++ +|+|+.+....+ ..+.++.+.+.++.
T Consensus 83 ~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 83 HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCC
Confidence 44444 58899999999887777788889999999999875 778999853111 12345666665554
No 413
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.53 E-value=0.00011 Score=80.05 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+++++|-+|+|||||+|+|+.... . ...+.+|+|.......+. ..+.|+||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~---~--------------~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV---A--------------KTSNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc---e--------------eeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 35699999999999999999972221 1 122346888777766654 449999999974
No 414
>PRK13796 GTPase YqeH; Provisional
Probab=97.52 E-value=0.00013 Score=81.04 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc-CCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~-g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.+++.++|.+|+|||||+|+|+... +.... ......+|+|.......+. ....++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~-------------~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDV-------------ITTSRFPGTTLDKIEIPLD---DGSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccce-------------EEecCCCCccceeEEEEcC---CCcEEEECCCcc
Confidence 3589999999999999999998432 11111 1123457778776554442 225899999985
No 415
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.52 E-value=0.00012 Score=78.47 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcc-eeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~-~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
..++++|++|+|||||+|+|+ |... ..|.+. ....+.+++|.......+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~---~~~~~~~g~v~--------~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALL---PDLDLATGEIS--------EKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHh---chhhcccccee--------ccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 689999999999999999996 2211 122210 011223445665554444322 379999999775
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00026 Score=77.37 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC-cceeeee--ecCCc--cccchhhhhhcceeEeeeE--EEE-------E-e
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEV--HEGTA--TMDWMEQEQERGITITSAA--TTT-------Y-W 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~-~~~~g~v--~~g~~--~~d~~~~e~~~g~Ti~~~~--~~~-------~-~ 152 (777)
.+.+.|+++|..|+||||++..|...... ..+.+-+ |.+.. ...+......-|+.+.... ..+ . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999643311 1122222 22110 0011111111222221110 000 0 0
Q ss_pred cCeEEEEEeCCCCcch----HHHHHHHHHh--cCeEEEEEeCCCCCchHH-HHHHHHHHHcCCC-EEEEEEccCCC
Q 004038 153 NKHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQS-ETVWRQADKYGVP-RICFVNKMDRL 220 (777)
Q Consensus 153 ~~~~i~liDTPG~~df----~~~~~~~l~~--aD~~ilVvda~~g~~~~~-~~~~~~~~~~~~p-~iiviNKiD~~ 220 (777)
.++.+.||||||.... ..++...... .|.+++|+++.. ..++ ..+++... .++ --+++||+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~--~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA--EIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC--cCCCCEEEEEcccCC
Confidence 3578999999998433 3333333332 366677877643 2222 22222222 233 35779999975
No 417
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.49 E-value=0.00063 Score=74.69 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc-CCcceeeeeecCCccccchhhhhh--------cceeEeeeEEEEEe------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQE--------RGITITSAATTTYW------ 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~-g~~~~~g~v~~g~~~~d~~~~e~~--------~g~Ti~~~~~~~~~------ 152 (777)
++++...|.|..|+|||||+++|+... |....+-.-+.|..-.|..-.... .-+.+...+..+..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 356778999999999999999998642 221111111333333333222111 00111111111111
Q ss_pred ---------cCeEEEEEeCCCCcchHHHHHHH-------HHhcCeEEEEEeCCCCCchH--------------------H
Q 004038 153 ---------NKHRINIIDTPGHVDFTLEVERA-------LRVLDGAICLFDSVAGVEPQ--------------------S 196 (777)
Q Consensus 153 ---------~~~~i~liDTPG~~df~~~~~~~-------l~~aD~~ilVvda~~g~~~~--------------------~ 196 (777)
......+|.|.|..+...-+... .-..|++|.|||+....... .
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 13467899999998854333221 12458999999998543210 0
Q ss_pred HHHHH-HHHHcCCCEEEEEEccCCCCcc-hHhHHHHHHH
Q 004038 197 ETVWR-QADKYGVPRICFVNKMDRLGAN-FFRTRDMIVT 233 (777)
Q Consensus 197 ~~~~~-~~~~~~~p~iiviNKiD~~~~~-~~~~~~~i~~ 233 (777)
..+.. ...+...--++++||+|+...+ ...+.+.|++
T Consensus 162 ~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 162 TPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred chHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHH
Confidence 00000 1122233458999999998754 4444445544
No 418
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.48 E-value=0.00042 Score=66.08 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
.++.+++..+|++++|+|+.++...+...+.+.+... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5678899999999999999998887877777777766 899999999999864
No 419
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.48 E-value=0.0002 Score=70.80 Aligned_cols=143 Identities=19% Similarity=0.278 Sum_probs=80.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCC------ccccchh---------h---hhhcceeEeee--EE
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT------ATMDWME---------Q---EQERGITITSA--AT 148 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~------~~~d~~~---------~---e~~~g~Ti~~~--~~ 148 (777)
-+.++|+.|+||||.++.+.... |......+.++-. .+.|... . ....|.-.... ..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~ 84 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLE 84 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHH
Confidence 35689999999999999997554 3333333433321 1111111 0 00001000000 00
Q ss_pred EEEe-------cCeEEEEEeCCCCcc------hHHHHHHHHHhcC---eEEEEEeCCCCCc-----hHHHHHHHHHHHcC
Q 004038 149 TTYW-------NKHRINIIDTPGHVD------FTLEVERALRVLD---GAICLFDSVAGVE-----PQSETVWRQADKYG 207 (777)
Q Consensus 149 ~~~~-------~~~~i~liDTPG~~d------f~~~~~~~l~~aD---~~ilVvda~~g~~-----~~~~~~~~~~~~~~ 207 (777)
++.| -...+.++|+||+++ ......+.+..-+ ++++++|+.--+. ......+..+....
T Consensus 85 NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE 164 (273)
T KOG1534|consen 85 NLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLE 164 (273)
T ss_pred HHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhc
Confidence 0112 134688999999765 3566666666643 6788888764221 22233444555678
Q ss_pred CCEEEEEEccCCCCcchHhHHHHHHHHhCC
Q 004038 208 VPRICFVNKMDRLGANFFRTRDMIVTNLGA 237 (777)
Q Consensus 208 ~p~iiviNKiD~~~~~~~~~~~~i~~~l~~ 237 (777)
+|.|=|++|||+... +..+++++.|..
T Consensus 165 ~P~INvlsKMDLlk~---~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 165 VPHINVLSKMDLLKD---KNKKELERFLNP 191 (273)
T ss_pred CcchhhhhHHHHhhh---hhHHHHHHhcCC
Confidence 999999999999864 344566665544
No 420
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.47 E-value=0.00039 Score=69.17 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH-hc-CCcceeeeeecCCccccchhhhhhccee---EeeeEEEEE--------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLF-YT-GRNYKIGEVHEGTATMDWMEQEQERGIT---ITSAATTTY-------------- 151 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~-~~-g~~~~~g~v~~g~~~~d~~~~e~~~g~T---i~~~~~~~~-------------- 151 (777)
|.+.|.|..|||||||+++|+. .. |.....-.-+.|....|....+. .|.+ +......+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~-~~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQE-DGVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHT-TT-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcc-cceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 3578999999999999999994 22 22111112133333333322222 2322 222222111
Q ss_pred ec--CeEEEEEeCCCCcchHHH-----HHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 152 WN--KHRINIIDTPGHVDFTLE-----VERALRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 152 ~~--~~~i~liDTPG~~df~~~-----~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
.. +..+.||-|.|..+...- .....-..+.+|.|+|+..-... ..... ...+...--++++||+|+...+
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~--~~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL--LREQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH--HHHHHCT-SEEEEE-GGGHHHH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh--hhhcchhcCEEEEeccccCChh
Confidence 02 357889999997764333 12223345999999999653111 11111 1223344569999999998765
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.47 E-value=0.00093 Score=75.19 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=72.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh----cCCcceeeeeecCCc-cccchh-hhhhcceeEeeeEE-----E--------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTA-TMDWME-QEQERGITITSAAT-----T-------- 149 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~----~g~~~~~g~v~~g~~-~~d~~~-~e~~~g~Ti~~~~~-----~-------- 149 (777)
+...|.++|.+|+||||++-.|... .|........|.... ..+... .....|+.+..... .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 4568899999999999998888644 222211222121100 001000 01122222221110 0
Q ss_pred EEecCeEEEEEeCCCCcch----HHHHHHH--HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 150 TYWNKHRINIIDTPGHVDF----TLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~df----~~~~~~~--l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
....++.+.||||||.... ..+.... ....|.+++|+|+..| .......+.... .+++ =+|+||+|...
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~~~- 253 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDGDA- 253 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 0114567999999996432 2222111 2246899999999854 222333333321 2333 57799999432
Q ss_pred chHhHHHHHHHHhCC
Q 004038 223 NFFRTRDMIVTNLGA 237 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (777)
. .-...++...++.
T Consensus 254 ~-~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 R-GGAALSVRSVTGK 267 (428)
T ss_pred c-ccHHHHHHHHHCc
Confidence 1 1124555556664
No 422
>PHA02518 ParA-like protein; Provisional
Probab=97.46 E-value=0.0013 Score=66.97 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=76.0
Q ss_pred EEEEEe-CCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccchhhhhhcc--eeEeeeEEEE------EecCeEEEE
Q 004038 92 NIGIMA-HIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERG--ITITSAATTT------YWNKHRINI 159 (777)
Q Consensus 92 nI~iiG-~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~~~e~~~g--~Ti~~~~~~~------~~~~~~i~l 159 (777)
.|+|.+ ..|+||||++-.|.+. .|...-.-+.|++....+|........ +........+ ....+.+.|
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~vi 81 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVV 81 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEE
Confidence 456664 4679999999988433 343333445555555555543221111 1100000000 013578999
Q ss_pred EeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH-----cCCCEE-EEEEccCCCCcchHhHHHHH
Q 004038 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRI-CFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 160 iDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~i-iviNKiD~~~~~~~~~~~~i 231 (777)
|||||..+ .....++..+|.+|+++.++.-.......+++.+.. .+.|.+ ++.|+.+.......+..+.+
T Consensus 82 iD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l 157 (211)
T PHA02518 82 VDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKAL 157 (211)
T ss_pred EeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHHHHHHH
Confidence 99999754 557889999999999999885433333333333332 245554 56677664433223333444
No 423
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.45 E-value=0.002 Score=69.88 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCC-cceeeeeecCCccccc---hhhhhhcceeEeeeEEEEEe--------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDW---MEQEQERGITITSAATTTYW-------------- 152 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~-~~~~g~v~~g~~~~d~---~~~e~~~g~Ti~~~~~~~~~-------------- 152 (777)
+...|-|--|||||||+|+|+.+... .-++---+-|..-.|. .....+.=..+...+..+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 56789999999999999999966542 1111111112222221 11111122233444444441
Q ss_pred -cCeEEEEEeCCCCcchHHHHHH--------HHHhcCeEEEEEeCCCCCchHHH---HHHHHHHHcCCCEEEEEEccCCC
Q 004038 153 -NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQSE---TVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 153 -~~~~i~liDTPG~~df~~~~~~--------~l~~aD~~ilVvda~~g~~~~~~---~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.+....+|-|-|..+=...+.. ..-..|++|-||||......... ...+|+. .-=++++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccCC
Confidence 3356889999998874333222 22345899999999976654432 2223332 3448999999999
Q ss_pred Ccc
Q 004038 221 GAN 223 (777)
Q Consensus 221 ~~~ 223 (777)
.++
T Consensus 159 ~~~ 161 (323)
T COG0523 159 DAE 161 (323)
T ss_pred CHH
Confidence 866
No 424
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.42 E-value=0.001 Score=67.98 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=52.2
Q ss_pred cCeEEEEEeCCCCcchHHHHHHH--HHhcCeEEEEEeCCCCCchHHHHHHHHHHHc----CCCE-EEEEEccCCCCcchH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKY----GVPR-ICFVNKMDRLGANFF 225 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~--l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~----~~p~-iiviNKiD~~~~~~~ 225 (777)
+.+.+.||||||....... ... ++.+|.+|+|++...--......+++.++.. +.+. .+++||+|.. .-.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 4688999999986521111 112 3489999999987643322333444444433 4444 4889999854 223
Q ss_pred hHHHHHHHHhCCCcee
Q 004038 226 RTRDMIVTNLGAKPLV 241 (777)
Q Consensus 226 ~~~~~i~~~l~~~~~~ 241 (777)
+.++++.+.++.....
T Consensus 192 ~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 192 ELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 4567777777765443
No 425
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.41 E-value=0.00079 Score=59.44 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=63.4
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccce
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 469 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdt 469 (777)
.++|.....+++.|.++.+-|.+|+|++||.+...... -||+.|+...| .++++|.||+.+-|.|++++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 46788888899999999999999999999999876432 36777766555 67999999999999999886 66887
Q ss_pred ecc
Q 004038 470 LCD 472 (777)
Q Consensus 470 L~~ 472 (777)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 653
No 426
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.41 E-value=0.0027 Score=66.34 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=57.7
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcchHhHHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~~~~~~~~i 231 (777)
+++.+.+||||+..+ ..+..++..+|.+|+|+++.......+....+.+...+.+. .+++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 357899999998765 45677888999999999988554455555666667778875 4889999864222 123455
Q ss_pred HHHhCCC
Q 004038 232 VTNLGAK 238 (777)
Q Consensus 232 ~~~l~~~ 238 (777)
.+.++.+
T Consensus 183 ~~~~~~~ 189 (251)
T TIGR01969 183 ETILEVP 189 (251)
T ss_pred HHhhCCc
Confidence 5556653
No 427
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.41 E-value=0.0019 Score=71.65 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhc------CC--cceeeee--ecC----------Cccccchhh-----------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT------GR--NYKIGEV--HEG----------TATMDWMEQ----------- 135 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~------g~--~~~~g~v--~~g----------~~~~d~~~~----------- 135 (777)
.+..++|+++|.-.+||||.++.+.... |. .+....| ..| .+..|-.++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4678999999999999999999885321 11 0111111 111 122222221
Q ss_pred -----hhhcceeEeeeEEEEEecC---eEEEEEeCCCCcc-------------hHHHHHHHHHhcCeEEEEEeCC-CC-C
Q 004038 136 -----EQERGITITSAATTTYWNK---HRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDSV-AG-V 192 (777)
Q Consensus 136 -----e~~~g~Ti~~~~~~~~~~~---~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvda~-~g-~ 192 (777)
.-..|.|+....+++..+| -+..|+|.||.+. .......++.+-+++|++|--. -. -
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 2345889988888888866 4789999999752 2344556777888888887322 11 1
Q ss_pred chHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 193 EPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
....-.+..++.-.|...|+|++|+|+...
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 122234556667789999999999998764
No 428
>PRK12289 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.00072 Score=74.33 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHhcCeEEEEEeCCCCC-ch-HHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 174 RALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 174 ~~l~~aD~~ilVvda~~g~-~~-~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+++.+|.+++|+|+.+.. .. ...+++..+...++|+++|+||+|+..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 3588999999999998653 33 334556666778999999999999863
No 429
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.35 E-value=0.00095 Score=73.01 Aligned_cols=153 Identities=20% Similarity=0.187 Sum_probs=92.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeee--------EEEEEe---cCeEEE
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------ATTTYW---NKHRIN 158 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~--------~~~~~~---~~~~i~ 158 (777)
-.-|+++|++-.||||++.+++...- +..+.+.....+..|-.|++.. |-||-.. .+.+.. -..++-
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~V-lPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLV-LPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhc-CCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEEE
Confidence 45799999999999999999974432 1111111111223333332211 2222111 111111 135788
Q ss_pred EEeCCCCc-------------------------chHHHHHHHHHh------cCeEEEEEeCCCCC------chHHHHHHH
Q 004038 159 IIDTPGHV-------------------------DFTLEVERALRV------LDGAICLFDSVAGV------EPQSETVWR 201 (777)
Q Consensus 159 liDTPG~~-------------------------df~~~~~~~l~~------aD~~ilVvda~~g~------~~~~~~~~~ 201 (777)
||||-||. -|......+-+. .=++|+-.|++-+- ....+++.+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999873 033333322221 12555666666332 234456788
Q ss_pred HHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 202 ~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
.+++.|+|+++++|-.+=...+-.+..+++.++++..++|+.+
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 9999999999999998876667778889999999998877654
No 430
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.34 E-value=0.0031 Score=65.83 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH--cCCCEEEEEEccCCCCcchHhHHHHH
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~iiviNKiD~~~~~~~~~~~~i 231 (777)
+.+.+||||+.. ......++..+|.+|+++.+..--..... .+.+.+.. ...+.-+|+|++|.......+..+.+
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 479999999954 45677889999999999988632222222 12222221 23456789999996544345566677
Q ss_pred HHHhCCC
Q 004038 232 VTNLGAK 238 (777)
Q Consensus 232 ~~~l~~~ 238 (777)
++.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 7777764
No 431
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.33 E-value=0.00066 Score=71.89 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=58.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--------------c
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------N 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--------------~ 153 (777)
.+...|+|+|-+|+|||||+|+|. ......+.. +-.||+...+.... .
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT---~~~a~~~Nf---------------PF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~ 79 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALT---KSKAGAANF---------------PFCTIDPNEARVEVPDSRFDLLCPIYGPK 79 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHh---cCCCCccCC---------------CcceeccccceeecCchHHHHHHHhcCCc
Confidence 456799999999999999999995 211111111 11344444433322 1
Q ss_pred ---CeEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 154 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 154 ---~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
.-.+++.|.+|... +....+.-+|.+|+++-||++.+
T Consensus 80 ~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 80 SKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23699999999753 45667888999999999999975
No 432
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0014 Score=73.51 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc--CC-cceeeeeecCCccccchh----hhhhcceeEeeeEEE-------EEec
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT--GR-NYKIGEVHEGTATMDWME----QEQERGITITSAATT-------TYWN 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~--g~-~~~~g~v~~g~~~~d~~~----~e~~~g~Ti~~~~~~-------~~~~ 153 (777)
.+...|+++|..|+||||++..|.... .. ....+-+...+...-... ..+..|+........ ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 345789999999999999999886432 10 111221111111111111 111223332211111 1125
Q ss_pred CeEEEEEeCCCCcchHHHHHH---HHHh---cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVER---ALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~---~l~~---aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~ 220 (777)
++.+.+|||+|.......... .+.. .+-.+||+|++.+.... .+++..... +++ =+++||+|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~~--~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQG--HGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhcC--CCCCEEEEEeeeCC
Confidence 678999999997643222222 2222 24578999998643221 222222222 333 5789999965
No 433
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.33 E-value=0.00036 Score=67.64 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
....+++++|.+|+|||||+|+|.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345688999999999999999996
No 434
>PRK00098 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00033 Score=75.61 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=37.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
..++++|++|+|||||+|+|+ |.. ...|.+.. ...+.+++|.......+. ....++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~---~~~~~~~g~v~~--------~~~~G~htT~~~~~~~~~---~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA---PDLELKTGEISE--------ALGRGKHTTTHVELYDLP---GGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh---CCcCCCCcceec--------cCCCCCcccccEEEEEcC---CCcEEEECCCcCc
Confidence 478999999999999999996 221 11222210 011123345444333332 2248999999875
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.30 E-value=0.0023 Score=57.85 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=46.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC----EEEEEEc
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP----RICFVNK 216 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p----~iiviNK 216 (777)
.+.++|||+..+ ......+..+|.+++|++....-.......++.+++.+.+ +.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 689999999765 3456788999999999999887777777788877776653 4578885
No 436
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.30 E-value=0.0036 Score=66.46 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=50.5
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH----HcCCCEE-EEEEccCCCCcchHhHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRI-CFVNKMDRLGANFFRTR 228 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~i-iviNKiD~~~~~~~~~~ 228 (777)
.+.+.||||||.... ..+..++..||.+|+++.+..........+++.++ ..+++.. +|+|++|.. ..+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HHH
Confidence 478999999987531 22445689999999999887543333344443332 3456654 688999841 234
Q ss_pred HHHHHHhCCCce
Q 004038 229 DMIVTNLGAKPL 240 (777)
Q Consensus 229 ~~i~~~l~~~~~ 240 (777)
+++.+.++....
T Consensus 189 ~~~~~~~~~~vl 200 (267)
T cd02032 189 DKFVEAVGMPVL 200 (267)
T ss_pred HHHHHhCCCCEE
Confidence 455555665433
No 437
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.29 E-value=0.0029 Score=64.26 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=53.1
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~ 221 (777)
..+.+.|||||.... ..+.....+.+|.+|+|+++...-........+++++.+.+++ +|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 357899999998432 2233445577999999999998777888888899999998875 7899999654
No 438
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.28 E-value=0.0027 Score=67.46 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH----HcCCCEE-EEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRI-CFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~i-iviNKiD~~~~~~~~~ 227 (777)
+++.+.||||||..... .+..++..||.+|+++.+..-.......+++.++ ..+++.. +++|+.+. .+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 35789999999864311 2345688999999999776432222333333322 3466654 78999773 233
Q ss_pred HHHHHHHhCCCce
Q 004038 228 RDMIVTNLGAKPL 240 (777)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (777)
++++.+.++....
T Consensus 190 ~~~~~~~~g~~vl 202 (270)
T PRK13185 190 IDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHcCCCEE
Confidence 4556666665443
No 439
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.27 E-value=0.00097 Score=74.66 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcc-----------eeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-----------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~-----------~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 155 (777)
....++|+|+|++++|||||+++|....|... +.+.......+.|+.+........+..... ...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~----~a~ 291 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVK----YAN 291 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHH----hcC
Confidence 45678999999999999999999987766541 122222223344544433333222222111 124
Q ss_pred EEEEEeCCCCcc----------hHHHHHHHHH--hcCeEEEEEeCCC-----CCch----H-----HHHHHHHHHHcCCC
Q 004038 156 RINIIDTPGHVD----------FTLEVERALR--VLDGAICLFDSVA-----GVEP----Q-----SETVWRQADKYGVP 209 (777)
Q Consensus 156 ~i~liDTPG~~d----------f~~~~~~~l~--~aD~~ilVvda~~-----g~~~----~-----~~~~~~~~~~~~~p 209 (777)
+++|+||--..- -...+...++ .-|.+ ++++... |+.. . ...+.+.+.+.|.|
T Consensus 292 ~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDlv-lll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g~~ 370 (399)
T PRK08099 292 KVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLT-ILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENNIE 370 (399)
T ss_pred CeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCEE-EEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 699999975321 1112333333 24744 4444442 2221 1 12244556678999
Q ss_pred EEEEEEccCCCCcchHhHHHHHHHHhCC
Q 004038 210 RICFVNKMDRLGANFFRTRDMIVTNLGA 237 (777)
Q Consensus 210 ~iiviNKiD~~~~~~~~~~~~i~~~l~~ 237 (777)
.+++ ++-|. ..++.+.++.|.+.|+.
T Consensus 371 ~v~l-~~g~~-~eR~~~a~~~i~~~l~~ 396 (399)
T PRK08099 371 YVHV-ESPDY-DKRYLRCVELVDQMLGE 396 (399)
T ss_pred EEEE-CCCCH-HHHHHHHHHHHHHHhhc
Confidence 6655 33332 24466666667666543
No 440
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.26 E-value=0.00074 Score=70.72 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHhcCeEEEEEeCCCCC-ch-HHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 174 RALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 174 ~~l~~aD~~ilVvda~~g~-~~-~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
..++.+|.+++|+|+.+.. .. ...+++..+...++|+++|+||+|+..
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 4689999999999999654 22 333445566668999999999999853
No 441
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.26 E-value=0.00037 Score=73.17 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc-
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV- 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~- 166 (777)
....++-|+|-||+|||||+|++........+... ...+.|+|+..+..---.+.-.+.++||||..
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~------------vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR------------VGAEPGVTRRVSERIRISHRPPVYLIDTPGILV 208 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhcccee------------ccCCCCceeeehhheEeccCCceEEecCCCcCC
Confidence 34579999999999999999999644433332211 23468899888875444466679999999963
Q ss_pred chHHHHHHHHHh
Q 004038 167 DFTLEVERALRV 178 (777)
Q Consensus 167 df~~~~~~~l~~ 178 (777)
.=....+.+++.
T Consensus 209 P~I~~~e~~lKL 220 (335)
T KOG2485|consen 209 PSIVDVEDGLKL 220 (335)
T ss_pred CCCCCHHHhhhh
Confidence 122334444444
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.023 Score=62.76 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=73.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC-cceeeeeecCC---ccccchh-hhhhcceeEeeeE-------------EE
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGT---ATMDWME-QEQERGITITSAA-------------TT 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~-~~~~g~v~~g~---~~~d~~~-~e~~~g~Ti~~~~-------------~~ 149 (777)
+++-.|.++|--|+||||.+..|..+... ..+.+-+...+ ...|... ...+-|+.+.... ..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 44567899999999999999998543221 11111111100 0000000 0111122211110 00
Q ss_pred EEecCeEEEEEeCCCCcchHHHHHH------HHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 150 TYWNKHRINIIDTPGHVDFTLEVER------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~df~~~~~~------~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
+...++.+.++||.|-...-.+... ..-.-|=+++|+||.-|-.... ....-...+++ =++++|+|-...
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~---~A~aF~e~l~itGvIlTKlDGdaR 254 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN---TAKAFNEALGITGVILTKLDGDAR 254 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH---HHHHHhhhcCCceEEEEcccCCCc
Confidence 1114568999999996543333322 2234589999999998743321 12222334665 478999995321
Q ss_pred chHhHHHHHHHHhCC
Q 004038 223 NFFRTRDMIVTNLGA 237 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (777)
--..-+++...|.
T Consensus 255 --GGaALS~~~~tg~ 267 (451)
T COG0541 255 --GGAALSARAITGK 267 (451)
T ss_pred --chHHHhhHHHHCC
Confidence 1112344555555
No 443
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.23 E-value=0.00094 Score=71.68 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=36.7
Q ss_pred HHHhcCeEEEEEeCCCCC-chH-HHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 175 ALRVLDGAICLFDSVAGV-EPQ-SETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 175 ~l~~aD~~ilVvda~~g~-~~~-~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
-+..+|.+++|+|+.++. ... ..+.+..+...++|+++|+||+|+..
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 467889999999999876 332 23455666778999999999999864
No 444
>PRK00098 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.0011 Score=71.53 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHHhcCeEEEEEeCCCCCc--hHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 175 ALRVLDGAICLFDSVAGVE--PQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 175 ~l~~aD~~ilVvda~~g~~--~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.++.+|.+++|+|+.+... ....+.+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4689999999999976532 222445566777899999999999985
No 445
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.18 E-value=0.0042 Score=66.78 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=52.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc----CCCEE-EEEEccCCCCcchHhHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY----GVPRI-CFVNKMDRLGANFFRTR 228 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~----~~p~i-iviNKiD~~~~~~~~~~ 228 (777)
++.+.+|||||... ......++..||.+|+++++..-.......+++.++.. +++.. +++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 57899999998732 12234567889999999988653333333444333332 44444 78899873 2345
Q ss_pred HHHHHHhCCCceeEEec
Q 004038 229 DMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 229 ~~i~~~l~~~~~~~~~p 245 (777)
+++.+.++.+.+. .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 5566677765444 444
No 446
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0045 Score=68.88 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC-------CcceeeeeecCC-ccccchhh-hhhcceeEeeeEEE-------EEe
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG-------RNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAATT-------TYW 152 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g-------~~~~~g~v~~g~-~~~d~~~~-e~~~g~Ti~~~~~~-------~~~ 152 (777)
....|+++|.+|+||||.+..|..... ........+... ...++... ...-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457899999999999999999864321 111112222110 00000110 11123322211110 012
Q ss_pred cCeEEEEEeCCCCcch----HHHHHHHHHhc--C-eEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 153 NKHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 153 ~~~~i~liDTPG~~df----~~~~~~~l~~a--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.++.+.||||||..-. ..++...+... + -.+||+||+.+..... +++......+ +.=+++||+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 5678999999997432 23444454433 3 5899999998733322 3333333222 346889999964
No 447
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0017 Score=73.32 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=67.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC---Ccceeeee--ecCCc-cccchh-hhhhcceeEeeeEEEE-------EecCe
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEV--HEGTA-TMDWME-QEQERGITITSAATTT-------YWNKH 155 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g---~~~~~g~v--~~g~~-~~d~~~-~e~~~g~Ti~~~~~~~-------~~~~~ 155 (777)
.++|+|+|.+|+||||++-.|....- ...+.+-+ +.+.. ..+... ..+..|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999999854321 11122222 11100 000000 0011222221111000 11357
Q ss_pred EEEEEeCCCCcch----HHHHHHHHHh---cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 156 RINIIDTPGHVDF----TLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 156 ~i~liDTPG~~df----~~~~~~~l~~---aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.+.||||||+..+ ..+....+.. -+-+.+|++++.+. .....+++.....++ .-+++||+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 8999999998643 2333344442 24678889987643 223334444444443 35889999974
No 448
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0025 Score=70.96 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=65.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCCc-cccchhhh-hhcceeEeeeE--E----EEEecCeEE
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWMEQE-QERGITITSAA--T----TTYWNKHRI 157 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~~-~~d~~~~e-~~~g~Ti~~~~--~----~~~~~~~~i 157 (777)
...|+++|.+|+||||++..|.... |........|.+.. ..+..... ...|+...... . .+.-.++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999997432 21111111111100 00001100 11222211100 0 001136789
Q ss_pred EEEeCCCCcch----HHHHHHHHHh-----cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 158 NIIDTPGHVDF----TLEVERALRV-----LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 158 ~liDTPG~~df----~~~~~~~l~~-----aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.||||||+... ..++...++. ..-.+||+||+.+.... ..+.+.....+ +.=++++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 99999998532 2333333333 23578999999864322 23333333222 235789999964
No 449
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.13 E-value=0.0003 Score=78.16 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+|++||.+|+||||+||+|. |... .+ +...+|.|.....+.+. -.+.|.||||.+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv---G~Kk--Vs------------VS~TPGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV---GRKK--VS------------VSSTPGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh---cCce--ee------------eecCCCCcceeEEEEcC---CCceecCCCCcc
Confidence 6899999999999999999996 3221 11 22346777666655443 568999999975
No 450
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.11 E-value=0.004 Score=55.76 Aligned_cols=81 Identities=22% Similarity=0.161 Sum_probs=52.6
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCCcc-eeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 93 IGIMA-HIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 93 I~iiG-~~~~GKSTL~~~Ll~~~g~~~-~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
|++.| ..|+||||+.-.|........ +. ...|..+ .+.+.++|||+..+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~v-------l~~d~d~-------------------~~d~viiD~p~~~~--~ 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRV-------LLIDLDP-------------------QYDYIIIDTPPSLG--L 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcE-------EEEeCCC-------------------CCCEEEEeCcCCCC--H
Confidence 56666 689999999998864332110 11 1111111 16789999999865 4
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHHHH
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR 201 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~ 201 (777)
....++..+|.+++++++...-.....++++
T Consensus 54 ~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 54 LTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 4558899999999999987654444444444
No 451
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.11 E-value=0.00058 Score=68.72 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=73.9
Q ss_pred EEEEeCCCCCHHHHHHHH---HHhcCCcceeeeeecCCccccchh------------hhhhcce--------eEeeeEEE
Q 004038 93 IGIMAHIDAGKTTTTERV---LFYTGRNYKIGEVHEGTATMDWME------------QEQERGI--------TITSAATT 149 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~L---l~~~g~~~~~g~v~~g~~~~d~~~------------~e~~~g~--------Ti~~~~~~ 149 (777)
.+|||+||+||||.++-+ +...|....+.+.++++-.+.+.. ...+.|. -+..-..+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 469999999999999876 444555445566666653333211 0011110 00000011
Q ss_pred EEe-------cCeEEEEEeCCCCcch------HHHHHHHHHhcCeEEEE---EeCCCCCch-----HHHHHHHHHHHcCC
Q 004038 150 TYW-------NKHRINIIDTPGHVDF------TLEVERALRVLDGAICL---FDSVAGVEP-----QSETVWRQADKYGV 208 (777)
Q Consensus 150 ~~~-------~~~~i~liDTPG~~df------~~~~~~~l~~aD~~ilV---vda~~g~~~-----~~~~~~~~~~~~~~ 208 (777)
++| ....+.++|+||+.++ ...+.+.++..|.-+++ +|+.---.+ ...-.+.-+.....
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 223 2457899999998754 55677778777765554 444411111 11122334455689
Q ss_pred CEEEEEEccCCCC
Q 004038 209 PRICFVNKMDRLG 221 (777)
Q Consensus 209 p~iiviNKiD~~~ 221 (777)
|.|=|+.|+|+..
T Consensus 165 phVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHVNVLSKADLLK 177 (290)
T ss_pred cchhhhhHhHHHH
Confidence 9999999999764
No 452
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=97.05 E-value=0.0075 Score=63.39 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=58.7
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC-CEEEEEEccCCCCcc--hHhHHHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGAN--FFRTRDM 230 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~-p~iiviNKiD~~~~~--~~~~~~~ 230 (777)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+..........+++.+...+. +..+++|+++..... ....+++
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~ 188 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDD 188 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCchhcccccccCHHH
Confidence 47899999998764 345678899999999999886656666677777776665 567899999853211 1112556
Q ss_pred HHHHhCCC
Q 004038 231 IVTNLGAK 238 (777)
Q Consensus 231 i~~~l~~~ 238 (777)
+.+.++..
T Consensus 189 ~~~~~~~~ 196 (261)
T TIGR01968 189 VLEILSIP 196 (261)
T ss_pred HHHHhCCc
Confidence 66767653
No 453
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.05 E-value=0.0049 Score=65.39 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=50.0
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH----HcCCCE-EEEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPR-ICFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~-iiviNKiD~~~~~~~~~ 227 (777)
+.+.+.||||||...- .....++..||.+|+++....-.......+++.+. ..+++. .+|+|++|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~-~~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVC-GGFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCcccc-CccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 3578999999986421 11224688999999998765332223333333332 245665 4788999854 34
Q ss_pred HHHHHHHhCCCce
Q 004038 228 RDMIVTNLGAKPL 240 (777)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (777)
++++.+.++.+..
T Consensus 188 ~~~~~~~~~~~vl 200 (268)
T TIGR01281 188 IERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHcCCCEE
Confidence 5666666666543
No 454
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.0057 Score=64.78 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC-cceeeeeecCCc---cccchh-hhhhcceeEeeeEE--E-------E-Eec
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA---TMDWME-QEQERGITITSAAT--T-------T-YWN 153 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~-~~~~g~v~~g~~---~~d~~~-~e~~~g~Ti~~~~~--~-------~-~~~ 153 (777)
+...++++|.+|+|||||+..|...... ....+-+..... ...... .-..-++.+..... . + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999988644211 112222211110 000100 01111222211100 0 0 012
Q ss_pred CeEEEEEeCCCCcch----HHHHHHHHHh--cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df----~~~~~~~l~~--aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
++.+.||||||.... ..++...++. .|-++||+||+.+-. ...++++.....+ +-=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 578999999998632 3334333332 367899999875322 2223333333322 2357899999754
No 455
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.03 E-value=0.0054 Score=55.04 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCCeEEEEEEEeecC--------CCceEEEEEEEeeeecCCCeEEeCCC-------C-----ceeecceeEEeccCcee
Q 004038 386 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK-------G-----KKERIGRLLEMHANSRE 445 (777)
Q Consensus 386 ~~~p~~~~V~K~~~~~--------~~G~l~~~RV~sG~l~~g~~v~~~~~-------~-----~~~ki~~i~~~~g~~~~ 445 (777)
.+.|+.++|.++|... .+|.++-++|.+|+|+.||.|.+.+. + ...+|.+|+.. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~----~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE----NN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec----Cc
Confidence 3678889999998755 77899999999999999999975421 1 12345555432 36
Q ss_pred ecceeecCCEEEE-cCCC
Q 004038 446 DVKVALAGDIIAL-AGLK 462 (777)
Q Consensus 446 ~v~~a~aGdIv~i-~gl~ 462 (777)
.+++|.||+.++| ++|+
T Consensus 78 ~l~~a~pGgliGvgT~Ld 95 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLD 95 (113)
T ss_pred cccEEeCCCeEEEccccC
Confidence 7999999999999 4454
No 456
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.00 E-value=0.0026 Score=70.51 Aligned_cols=54 Identities=19% Similarity=0.024 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+|........+.+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 46777666667889999999999876655544444443 2689999999999864
No 457
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.99 E-value=0.005 Score=55.49 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=64.2
Q ss_pred EEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCc--eeecceeEEeccC-------ceeecceee--cCCEEEEcC
Q 004038 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALAG 460 (777)
Q Consensus 392 ~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~--~~ki~~i~~~~g~-------~~~~v~~a~--aGdIv~i~g 460 (777)
+.|.....+++.|.++-+-||+|+|+.||.|....... ..||+.|+...+. ++..++++. +|--+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 56777788999999999999999999999998765543 2578888877763 345788888 777777789
Q ss_pred CCcccccceec
Q 004038 461 LKDTITGETLC 471 (777)
Q Consensus 461 l~~~~~GdtL~ 471 (777)
|+++..|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 99998898764
No 458
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.97 E-value=0.0045 Score=65.95 Aligned_cols=86 Identities=9% Similarity=-0.046 Sum_probs=51.0
Q ss_pred ecCeEEEEEeCCCCcchH-HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH---HcCCCEE-EEEEccCCCCcchHh
Q 004038 152 WNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFFR 226 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~-~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~---~~~~p~i-iviNKiD~~~~~~~~ 226 (777)
++++.+.+|||||..... -....++..||.+|+++............+++.+. ..++++. +|+|+.+.. . -.+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~-~-~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD-G-ERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC-c-cHH
Confidence 356889999999864211 01112345789999999875432222223334343 3456664 788976532 1 256
Q ss_pred HHHHHHHHhCCCc
Q 004038 227 TRDMIVTNLGAKP 239 (777)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (777)
+++.+++.++...
T Consensus 192 ~~e~l~~~~~~~v 204 (273)
T PRK13232 192 LLEAFAKKLGSQL 204 (273)
T ss_pred HHHHHHHHhCCCe
Confidence 6788888888643
No 459
>CHL00175 minD septum-site determining protein; Validated
Probab=96.96 E-value=0.015 Score=62.23 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcch--HhHHHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF--FRTRDM 230 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~--~~~~~~ 230 (777)
.+.+.+||||+... .....++..+|.+++|++....-......+++.+.+.+.+ .-+|+|+++....+. ....++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 57899999998754 4566778899999999988765555666677777776654 567899998532211 113566
Q ss_pred HHHHhCCCceeEEec
Q 004038 231 IVTNLGAKPLVVQLP 245 (777)
Q Consensus 231 i~~~l~~~~~~~~~p 245 (777)
+.+.++.... ..+|
T Consensus 204 l~~~~~~~~~-~~Ip 217 (281)
T CHL00175 204 VQEMLGIPLL-GAIP 217 (281)
T ss_pred HHHHhCCCeE-EEcc
Confidence 7777776433 3444
No 460
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.92 E-value=0.0073 Score=63.98 Aligned_cols=85 Identities=12% Similarity=-0.036 Sum_probs=47.1
Q ss_pred cCeEEEEEeCCCCcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHH----HcCCCEEEEE-EccCCCCcchHh
Q 004038 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRICFV-NKMDRLGANFFR 226 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~iivi-NKiD~~~~~~~~ 226 (777)
.++.+.||||||....... ...++..+|.+|+++.+..-.......+++.+. ..+.+...|+ |+.. ...-.+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~ 192 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDE 192 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHH
Confidence 3578999999986521111 112234699999999887533222223332222 2356765444 5422 222345
Q ss_pred HHHHHHHHhCCCc
Q 004038 227 TRDMIVTNLGAKP 239 (777)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (777)
.++++.+.++...
T Consensus 193 ~~~~l~~~~g~~v 205 (270)
T cd02040 193 LIDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHHcCCCe
Confidence 6777777777643
No 461
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.89 E-value=0.0017 Score=66.18 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch--
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df-- 168 (777)
-+++++|.+.+|||||+..| +|..+.... -.+.|...-.....+++-++.+.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l---~g~~s~vas---------------yefttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKL---TGTFSEVAA---------------YEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhh---cCCCCcccc---------------ccceeEEEecceEeccccceeeecCcchhcccc
Confidence 37999999999999999999 354333221 1234555555566778899999999998652
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCch
Q 004038 169 -----TLEVERALRVLDGAICLFDSVAGVEP 194 (777)
Q Consensus 169 -----~~~~~~~l~~aD~~ilVvda~~g~~~ 194 (777)
..++....+.|.++++|.|+..++..
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCcccH
Confidence 34577778999999999999887643
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.0042 Score=70.70 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCCc---cccchh-hhhhcceeEeeeEEE-------EEec
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA---TMDWME-QEQERGITITSAATT-------TYWN 153 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~~---~~d~~~-~e~~~g~Ti~~~~~~-------~~~~ 153 (777)
+...|+++|..|+||||++..|.... |. .+++-+...+. ..+... .-...|+.+...... ....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 34689999999999999999996432 21 12222211110 000000 012233332211111 1224
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHh-cC-----eEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRV-LD-----GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~-aD-----~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
++.+.+|||+|...........+.. .+ -.+||+|+..+... ..++++.....+ ..-+++||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 5679999999954322222222221 12 26899999865421 222333333333 335678999964
No 463
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0069 Score=61.25 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
++|.++|+--+||||+-...++...- .+..-.|....+|.+....++ ..+.+||.||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP-------------neTlflESTski~~d~is~sf----inf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP-------------NETLFLESTSKITRDHISNSF----INFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC-------------CceeEeeccCcccHhhhhhhh----cceEEeecCCccccCC
Confidence 45999999999999988766522110 011111222222222111111 3578999999988743
Q ss_pred ---HHHHHHHhcCeEEEEEeCCCCCch-HHHHHHHHHHHc----CCCEEEEEEccCCCCcc
Q 004038 171 ---EVERALRVLDGAICLFDSVAGVEP-QSETVWRQADKY----GVPRICFVNKMDRLGAN 223 (777)
Q Consensus 171 ---~~~~~l~~aD~~ilVvda~~g~~~-~~~~~~~~~~~~----~~p~iiviNKiD~~~~~ 223 (777)
..+.-.+.+-+.|+||||.+.... -++-+....+.+ ++.+=+++.|+|-+..+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 356677889999999999875433 333333344444 45567899999988755
No 464
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.85 E-value=0.02 Score=62.53 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=57.4
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~ 232 (777)
..+.+.+||||+..+ ..+..++..+|.+|+|++..-.-.....++++.+...+...-+|+|+....... .+++.
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 357899999999865 447788999999999998875445556666777766665566677875433222 36677
Q ss_pred HHhCCCc
Q 004038 233 TNLGAKP 239 (777)
Q Consensus 233 ~~l~~~~ 239 (777)
+.++...
T Consensus 277 ~~lg~~v 283 (322)
T TIGR03815 277 ESLGLPL 283 (322)
T ss_pred HHhCCCc
Confidence 7777643
No 465
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0069 Score=66.57 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC---CcceeeeeecCCccccchh---hhhh------cceeEeeeEEEEE----
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWME---QEQE------RGITITSAATTTY---- 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g---~~~~~g~v~~g~~~~d~~~---~e~~------~g~Ti~~~~~~~~---- 151 (777)
.+.+.|+++|++|+||||.+-.|..... ...+++- -++|.+. .|+- -|+++......-+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVai-----ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAI-----ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEE-----EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 3478999999999999999999864333 1122222 2223322 2211 1333332221111
Q ss_pred ---ecCeEEEEEeCCCCcch----HHHHHHHHHhc--CeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCC
Q 004038 152 ---WNKHRINIIDTPGHVDF----TLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (777)
Q Consensus 152 ---~~~~~i~liDTPG~~df----~~~~~~~l~~a--D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~ 221 (777)
..++.+.||||.|..-. +.++...+..+ .-..||++++..- ....+++..... +|+ -+++||+|-..
T Consensus 276 i~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~--~~i~~~I~TKlDET~ 352 (407)
T COG1419 276 IEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSL--FPIDGLIFTKLDETT 352 (407)
T ss_pred HHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhcc--CCcceeEEEcccccC
Confidence 14679999999997532 44444444444 4567788877522 222334444443 344 46789999654
No 466
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.84 E-value=0.0024 Score=69.59 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=62.6
Q ss_pred ceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-----------chHHHHHHHHHHH---
Q 004038 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK--- 205 (777)
Q Consensus 140 g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-----------~~~~~~~~~~~~~--- 205 (777)
..|.......+.+++..+.+||++|+......+...+..++++++|+|.++-. .......++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 34555566667788999999999999999999999999999999999998642 1222233333322
Q ss_pred -cCCCEEEEEEccCCCC
Q 004038 206 -YGVPRICFVNKMDRLG 221 (777)
Q Consensus 206 -~~~p~iiviNKiD~~~ 221 (777)
.++|+++++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 4789999999999864
No 467
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.83 E-value=0.00012 Score=70.77 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC---eEEEEEeCCCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGHV 166 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDTPG~~ 166 (777)
.-.+.|+|..++|||+++.+.+++.-...-. ..|-++.+.--+.|+. .++.|||..|+.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yR------------------AtIgvdfalkVl~wdd~t~vRlqLwdIagQe 86 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYR------------------ATIGVDFALKVLQWDDKTIVRLQLWDIAGQE 86 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHH------------------HHHhHHHHHHHhccChHHHHHHHHhcchhhh
Confidence 4578899999999999999987543211100 0011111111233433 357899999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH------cC--CCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YG--VPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~------~~--~p~iiviNKiD~~~~ 222 (777)
.|...+.-+++.+.++.+|+|.+...+.....-|.+-.. .| +|+++.-||+|....
T Consensus 87 rfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 87 RFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred hhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 999888889999999999999997665444444433211 13 455777899997643
No 468
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.79 E-value=0.0094 Score=63.71 Aligned_cols=91 Identities=9% Similarity=0.004 Sum_probs=50.2
Q ss_pred cCeEEEEEeCCCCcchHH-HHHHHHHhcCeEEEEEeCCCCCchHHHHHHH---HHHH-cCCCEEEEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSETVWR---QADK-YGVPRICFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~-~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~---~~~~-~~~p~iiviNKiD~~~~~~~~~ 227 (777)
.++.+.||||||..-... .+..++..||.+|+++.+..........+++ .+++ .+.++..+++..... .+..+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~-~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRSV-IDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccCC-CchhHH
Confidence 358899999998532111 1223456699999999887533333333333 3322 355554445433221 112456
Q ss_pred HHHHHHHhCCCceeEEec
Q 004038 228 RDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 228 ~~~i~~~l~~~~~~~~~p 245 (777)
++.+.+.++.... -.+|
T Consensus 194 ~e~l~~~~g~~vl-~~Ip 210 (279)
T PRK13230 194 VEEFAKKIGTNVI-GKIP 210 (279)
T ss_pred HHHHHHHhCCcEE-EECC
Confidence 7788888877544 2344
No 469
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.78 E-value=0.0038 Score=68.61 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=63.3
Q ss_pred ceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-----------chHHHHHHHHHHH---
Q 004038 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK--- 205 (777)
Q Consensus 140 g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-----------~~~~~~~~~~~~~--- 205 (777)
-.|.......+.+++..+.+||..|+..+...+..++..++++|+|+|.++-. .......++.+..
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 34555566677888999999999999999999999999999999999999632 1223334443332
Q ss_pred -cCCCEEEEEEccCCCC
Q 004038 206 -YGVPRICFVNKMDRLG 221 (777)
Q Consensus 206 -~~~p~iiviNKiD~~~ 221 (777)
.++|+++++||.|...
T Consensus 249 ~~~~piil~~NK~D~~~ 265 (342)
T smart00275 249 FANTSIILFLNKIDLFE 265 (342)
T ss_pred ccCCcEEEEEecHHhHH
Confidence 4789999999999864
No 470
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0062 Score=72.64 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=63.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeee--ecCC-ccccchh-hhhhcceeEeeeEE--EE-----EecC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEV--HEGT-ATMDWME-QEQERGITITSAAT--TT-----YWNK 154 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v--~~g~-~~~d~~~-~e~~~g~Ti~~~~~--~~-----~~~~ 154 (777)
...|+++|..|+||||++..|.... |. .+++-+ |... ...+... .-...|+.+..... .+ ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4678999999999999999996322 11 111111 1100 0001000 01122332221100 00 1145
Q ss_pred eEEEEEeCCCCcchHHHHHHHHH------hcCeEEEEEeCCCCCchHHHHHHHHHHHc-CC-CEEEEEEccCCC
Q 004038 155 HRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKY-GV-PRICFVNKMDRL 220 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvda~~g~~~~~~~~~~~~~~~-~~-p~iiviNKiD~~ 220 (777)
+.+.||||||.-....+....+. .-+-.+||+|++.+.. ...++.+..... +. +.=+|+||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 68999999994322122222221 2356899999986321 112233333322 11 235789999965
No 471
>PRK01889 GTPase RsgA; Reviewed
Probab=96.75 E-value=0.0056 Score=67.73 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=39.0
Q ss_pred HHhcCeEEEEEeCCCCCch-HHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 176 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 176 l~~aD~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.++|.+++|+++...+.. ....++..+...+++.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 4678999999999877766 555677888899999999999999864
No 472
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.0063 Score=62.65 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~ 166 (777)
-.-||.-+|.+|-|||||++.|+...-..... .. ..+++........+.-. ..+++++||-|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~---------~H-----~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPS---------TH-----TLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCC---------cc-----CCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 34699999999999999999997221110000 00 01111111111111111 2478999999987
Q ss_pred c-------------hHH-HH----------HHHHH-----hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEc
Q 004038 167 D-------------FTL-EV----------ERALR-----VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (777)
Q Consensus 167 d-------------f~~-~~----------~~~l~-----~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNK 216 (777)
| |+. +. .+++. ..+++++.|..+ ++....+.-.++.+.. .+.+|-+|-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHH
Confidence 5 211 11 12221 125666666665 6766666655555543 4778889999
Q ss_pred cCCCCc-chHhHHHHHHHHhCCC-ceeEEeccCC
Q 004038 217 MDRLGA-NFFRTRDMIVTNLGAK-PLVVQLPVGA 248 (777)
Q Consensus 217 iD~~~~-~~~~~~~~i~~~l~~~-~~~~~~pi~~ 248 (777)
.|.... ++.+....|...|..+ .-..|.|...
T Consensus 186 aDtisK~eL~~FK~kimsEL~sngv~IYqfPtDd 219 (406)
T KOG3859|consen 186 ADTISKEELKRFKIKIMSELVSNGVQIYQFPTDD 219 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCceeeeccchH
Confidence 997653 3555555555555444 4455677643
No 473
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.65 E-value=0.013 Score=62.50 Aligned_cols=84 Identities=11% Similarity=-0.058 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHH---H-HHcCCCEE-EEEEccCCCCcchHhH
Q 004038 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQ---A-DKYGVPRI-CFVNKMDRLGANFFRT 227 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~---~-~~~~~p~i-iviNKiD~~~~~~~~~ 227 (777)
.+.+.||||||....... ...++..+|.+|+++.+..-.......+++. + +..+++.. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 478999999986421110 1123447899999998875433333333332 2 22466665 4455422 2233455
Q ss_pred HHHHHHHhCCCc
Q 004038 228 RDMIVTNLGAKP 239 (777)
Q Consensus 228 ~~~i~~~l~~~~ 239 (777)
.+.+.+.++...
T Consensus 193 ~e~l~~~~~~~v 204 (275)
T TIGR01287 193 IDEFAKKLGTQL 204 (275)
T ss_pred HHHHHHHhCCce
Confidence 677777777643
No 474
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.64 E-value=0.011 Score=60.54 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred eCCCCCHHHHHHHHHH---hcCCcceeeeeecCCccccchhhhhhcc-----eeEeeeEEE--E-------EecCeEEEE
Q 004038 97 AHIDAGKTTTTERVLF---YTGRNYKIGEVHEGTATMDWMEQEQERG-----ITITSAATT--T-------YWNKHRINI 159 (777)
Q Consensus 97 G~~~~GKSTL~~~Ll~---~~g~~~~~g~v~~g~~~~d~~~~e~~~g-----~Ti~~~~~~--~-------~~~~~~i~l 159 (777)
...|+||||++-.|.. ..|....+-+-|+......|.....+.| +.+...... + .-.++.+.|
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEE
Confidence 4579999999998843 2344333444456555566654443333 122111000 0 013467999
Q ss_pred EeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHH------HHcCCCEEEEEEccCC
Q 004038 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA------DKYGVPRICFVNKMDR 219 (777)
Q Consensus 160 iDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~------~~~~~p~iiviNKiD~ 219 (777)
+||+|... .....++..+|.+|+.+-.+.-...+..+.++.. ....+|.-+++|++.-
T Consensus 89 vDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 89 VDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred EeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 99999875 3466677889999988766643333333333222 2347899999999973
No 475
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.62 E-value=0.0038 Score=62.37 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=56.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC---EEEEEEccCCCCcc-hHhHHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP---RICFVNKMDRLGAN-FFRTRD 229 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p---~iiviNKiD~~~~~-~~~~~~ 229 (777)
.+.+.+||||+.... .+..++..+|.+|+++++..--...+..+.+.++..+.+ .-+|+||++....+ .++...
T Consensus 94 ~yD~iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~ 171 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSD--PVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIE 171 (195)
T ss_dssp TSSEEEEEECSSSSH--HHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHH
T ss_pred cccceeecccccccH--HHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHH
Confidence 388999999997653 377889999999999998864455566667777777743 36789999875433 444444
Q ss_pred HHHHHh
Q 004038 230 MIVTNL 235 (777)
Q Consensus 230 ~i~~~l 235 (777)
.+...+
T Consensus 172 ~~~~~~ 177 (195)
T PF01656_consen 172 EIEREL 177 (195)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 444433
No 476
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.61 E-value=0.0014 Score=70.97 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=51.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.++...++|+|-+|+||||+||+|... .....|. ..|+|.......+ +..|.|+|.||..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~--k~C~vg~---------------~pGvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRR--KACNVGN---------------VPGVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHh--ccccCCC---------------Cccchhhhhheec---cCCceeccCCcee
Confidence 356788999999999999999999732 2233333 3567766665544 4679999999975
Q ss_pred chH--HHHHHHHHhcCeEEEEEe
Q 004038 167 DFT--LEVERALRVLDGAICLFD 187 (777)
Q Consensus 167 df~--~~~~~~l~~aD~~ilVvd 187 (777)
--. ..-..+|+.++-+-=+.|
T Consensus 309 ~~~~~~~~~~~Lrn~~~i~~~~d 331 (435)
T KOG2484|consen 309 PPSIDEKDALALRNCIPIGKVAD 331 (435)
T ss_pred ecCCCccchhhhhcccccccccC
Confidence 211 111345565544433333
No 477
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.61 E-value=0.011 Score=52.26 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=60.4
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCc-ccccce
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 469 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdt 469 (777)
.++|.....+++.|.++.+-|.+|+|++||.+...... -||+.++... -..+.++.||+.+-+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~d~~---g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMVDEN---GKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEECCC---CCCccccCCCCCEEEeeecCCccCCCE
Confidence 46788888899999999999999999999999875432 3555555444 45789999999999999887 466776
Q ss_pred ec
Q 004038 470 LC 471 (777)
Q Consensus 470 L~ 471 (777)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 478
>PRK13796 GTPase YqeH; Provisional
Probab=96.60 E-value=0.01 Score=65.85 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhcC-eEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+|. .+...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 444 3667777666 89999999985544444333322 2789999999999864
No 479
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.59 E-value=0.005 Score=64.21 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=71.1
Q ss_pred ccCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee---ecCC-ccccc-hhhhhhcc------eeEeeeEEEEE
Q 004038 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV---HEGT-ATMDW-MEQEQERG------ITITSAATTTY 151 (777)
Q Consensus 83 ~~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v---~~g~-~~~d~-~~~e~~~g------~Ti~~~~~~~~ 151 (777)
...+..+++.-.|.|..|+|||||+|.++ ++.-.+...| ..|. .-.+. +-.+...| ......+..+.
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCt 127 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCT 127 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEE
Confidence 44456778888999999999999999998 3332221111 0111 00000 00001011 01111112222
Q ss_pred e---------------cCeEEEEEeCCCCcchHHHH--------HHHHHhcCeEEEEEeCCCCCchHHH----HHHH-HH
Q 004038 152 W---------------NKHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQSE----TVWR-QA 203 (777)
Q Consensus 152 ~---------------~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~ilVvda~~g~~~~~~----~~~~-~~ 203 (777)
. ......++.|-|.++-..-. ...--..|++|-||||.+....-+. -++. ..
T Consensus 128 Vk~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~ 207 (391)
T KOG2743|consen 128 VKDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT 207 (391)
T ss_pred ecchHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH
Confidence 1 23568899999998732221 1112245999999999854321111 1111 11
Q ss_pred HHcCCCEEEEEEccCCCCcc
Q 004038 204 DKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 204 ~~~~~p~iiviNKiD~~~~~ 223 (777)
.+...---+++||.|+...+
T Consensus 208 ~QiA~AD~II~NKtDli~~e 227 (391)
T KOG2743|consen 208 RQIALADRIIMNKTDLVSEE 227 (391)
T ss_pred HHHhhhheeeeccccccCHH
Confidence 11112235789999998753
No 480
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.58 E-value=0.035 Score=58.91 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=56.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc---------CCCEEEEEEccCCCCcc-
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---------GVPRICFVNKMDRLGAN- 223 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~---------~~p~iiviNKiD~~~~~- 223 (777)
.+.+.+||||+... .....++..+|.+|+|+++..........+++.+... +++..+++|++|.....
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~ 190 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhhh
Confidence 58899999998765 4566778999999999999865555555555554421 23356889999864321
Q ss_pred -hHhHHHHHHHHhCCC
Q 004038 224 -FFRTRDMIVTNLGAK 238 (777)
Q Consensus 224 -~~~~~~~i~~~l~~~ 238 (777)
.....+++.+.++..
T Consensus 191 ~~~~~~~~~~~~~g~~ 206 (270)
T PRK10818 191 GDMLSMEDVLEILRIK 206 (270)
T ss_pred cccccHHHHHHHhCCc
Confidence 111356677777764
No 481
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.56 E-value=0.019 Score=49.82 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=51.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH-
Q 004038 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE- 171 (777)
Q Consensus 93 I~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~- 171 (777)
+++.|..|+||||++..|...... .|..+-. + + .+.++|+||..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------------~g~~v~~----~--~--d~iivD~~~~~~~~~~~ 51 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------------RGKRVLL----I--D--DYVLIDTPPGLGLLVLL 51 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------------CCCeEEE----E--C--CEEEEeCCCCccchhhh
Confidence 678899999999999999633211 1111100 0 0 6899999998753221
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHHHHH
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQSETV 199 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~~~~ 199 (777)
....+..+|.++++++............
T Consensus 52 ~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 52 CLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 2577789999999999887655544444
No 482
>PRK12288 GTPase RsgA; Reviewed
Probab=96.54 E-value=0.013 Score=64.51 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHhcCeEEEEEeCCCCCchHHH-HHHHHHHHcCCCEEEEEEccCCCC
Q 004038 176 LRVLDGAICLFDSVAGVEPQSE-TVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 176 l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.++|.+++|.+.......... .++..+...++|.++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 4678999999998765554433 344556677999999999999864
No 483
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.49 E-value=0.026 Score=47.99 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=49.7
Q ss_pred CeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCCcccc
Q 004038 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (777)
Q Consensus 389 p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~ 466 (777)
|....|.+.+.-.... ...|+|..|+|++|..| +|. +++.+..++- +.+++++|.+||-|++ .|..++..
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~-~~k~v~~A~~G~eVai~Ieg~~~i~e 75 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIED-NGKNVDEAKKGDEVAISIEGPTQIKE 75 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEE-TTEEESEEETT-EEEEEEET--TB-T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEE-CCcCccccCCCCEEEEEEeCCccCCC
Confidence 4444555554445556 77779999999999999 332 3777777764 4589999999999998 34335667
Q ss_pred cceec
Q 004038 467 GETLC 471 (777)
Q Consensus 467 GdtL~ 471 (777)
||+|.
T Consensus 76 GDiLy 80 (81)
T PF14578_consen 76 GDILY 80 (81)
T ss_dssp T-EEE
T ss_pred CCEEe
Confidence 88763
No 484
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.45 E-value=0.002 Score=69.29 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHH
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..++...|++||.+|+||||++|.|-
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHh
Confidence 44667899999999999999999996
No 485
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=96.34 E-value=0.031 Score=62.77 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=58.7
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-------HHHHHHHHcC----CCE-EEEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-------TVWRQADKYG----VPR-ICFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-------~~~~~~~~~~----~p~-iiviNKiD~~~ 221 (777)
.+.+.|||||+..+ ..+..++..+|.+|+++.+..-....+. .+++.+.+.+ ... -+++|++|...
T Consensus 234 ~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 311 (387)
T TIGR03453 234 DYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPND 311 (387)
T ss_pred cCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCC
Confidence 57899999999865 4578899999999999987532222222 2233333332 222 47899999655
Q ss_pred cchHhHHHHHHHHhCCCceeEEec
Q 004038 222 ANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
....+..+.+++.++....+..+|
T Consensus 312 ~~~~~~~~~l~~~~~~~vl~~~I~ 335 (387)
T TIGR03453 312 GPQAQMVAFLRSLFGDHVLTNPML 335 (387)
T ss_pred ccHHHHHHHHHHHhcccccccccc
Confidence 445667788888887654433333
No 486
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.33 E-value=0.072 Score=56.34 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERV 110 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~L 110 (777)
....||.++|..++|||||+..|
T Consensus 50 psgk~VlvlGdn~sGKtsLi~kl 72 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKL 72 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHh
Confidence 35679999999999999999999
No 487
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=96.30 E-value=0.028 Score=63.39 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=57.6
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-------HHHHHc--CC--CEE-EEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-------RQADKY--GV--PRI-CFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-------~~~~~~--~~--p~i-iviNKiD~~~ 221 (777)
.+.+.|||||+... ..+..++..+|.+|+++.+..-.......++ +.+.+. ++ ..+ +++|++|...
T Consensus 251 ~yD~IiIDtpP~l~--~~t~~al~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~ 328 (405)
T PRK13869 251 DYDVVVIDCPPQLG--FLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD 328 (405)
T ss_pred cCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC
Confidence 57899999999875 4688899999999999987643222222333 233332 22 233 7899999655
Q ss_pred cchHhHHHHHHHHhCCCce
Q 004038 222 ANFFRTRDMIVTNLGAKPL 240 (777)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~ 240 (777)
..-.++.+.+++.++....
T Consensus 329 ~~~~~~~~~l~~~~~~~vl 347 (405)
T PRK13869 329 APQTKVAALLRNMFEDHVL 347 (405)
T ss_pred cHHHHHHHHHHHHhhhhhc
Confidence 5456678888888876443
No 488
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.024 Score=61.29 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCccee--eeeecCCccccchhh-hhhcceeEeeeEEEEE-----------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKI--GEVHEGTATMDWMEQ-EQERGITITSAATTTY----------- 151 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~--g~v~~g~~~~d~~~~-e~~~g~Ti~~~~~~~~----------- 151 (777)
+.-.|.++|--|+||||.+-.|.++- |..... ++... .-..|.... ..+.++.+..+....+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR-agAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR-AGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc-cchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 34467899999999999999996542 221111 11000 011233322 1223344333322211
Q ss_pred --ecCeEEEEEeCCCCcc----hHHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCE-EEEEEccCCC
Q 004038 152 --WNKHRINIIDTPGHVD----FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 220 (777)
Q Consensus 152 --~~~~~i~liDTPG~~d----f~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~-iiviNKiD~~ 220 (777)
.+++.+.++||.|-.. +..|+..... .-|-+|+|+||+-|.... .+++.. .+-+ -++++|+|-.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEecccC
Confidence 1578999999999653 2333332222 249999999999874321 122221 2222 4789999954
No 489
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.28 E-value=0.04 Score=56.60 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=50.8
Q ss_pred eEEEEEeCCCCcchHHH-HHHHHHh--cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCC
Q 004038 155 HRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~-~~~~l~~--aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~ 220 (777)
+.+.++|||........ +...+.. +|.+++|+.+...........++.++..+.+. -+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 89999999976443322 2333333 48999999999888888999999999999886 5889998755
No 490
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.091 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+++|.-|+|||||++.|.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHh
Confidence 456789999999999999999985
No 491
>PRK13695 putative NTPase; Provisional
Probab=96.25 E-value=0.011 Score=58.42 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=30.5
Q ss_pred HhcCeEEEEEe---CCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 177 RVLDGAICLFD---SVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 177 ~~aD~~ilVvd---a~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
..+|. +++| ..+....+..+.+..+.+.+.|+++++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34555 7889 666667777888888888899999999984
No 492
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.23 E-value=0.028 Score=60.20 Aligned_cols=124 Identities=23% Similarity=0.356 Sum_probs=67.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCcc----ccchhh-hhhcceeEeeeEE-----EEEe--
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTAT----MDWMEQ-EQERGITITSAAT-----TTYW-- 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~~----~d~~~~-e~~~g~Ti~~~~~-----~~~~-- 152 (777)
.++-.|.++|-.|+||||.+..|.+.. |...-.+ .|.|+ .+.... -..-|+.+-.... ++-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla---A~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA---AGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE---ecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 346678999999999999999996432 2211111 11111 000000 0122333322110 0001
Q ss_pred ------cCeEEEEEeCCCCc----chHHHHHHHHHhc---Ce-----EEEEEeCCCCCchHHHHHHHHHHHc--CCCE-E
Q 004038 153 ------NKHRINIIDTPGHV----DFTLEVERALRVL---DG-----AICLFDSVAGVEPQSETVWRQADKY--GVPR-I 211 (777)
Q Consensus 153 ------~~~~i~liDTPG~~----df~~~~~~~l~~a---D~-----~ilVvda~~g~~~~~~~~~~~~~~~--~~p~-i 211 (777)
.++.+.||||.|-. .+..|...-.+.+ +. +++|+||.-|-.. +.+++.. -+++ -
T Consensus 214 i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~G 288 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLDG 288 (340)
T ss_pred HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCce
Confidence 46789999999943 4566655555544 33 7888899987432 2222222 1333 5
Q ss_pred EEEEccCC
Q 004038 212 CFVNKMDR 219 (777)
Q Consensus 212 iviNKiD~ 219 (777)
++++|+|-
T Consensus 289 iIlTKlDg 296 (340)
T COG0552 289 IILTKLDG 296 (340)
T ss_pred EEEEeccc
Confidence 78999993
No 493
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.19 E-value=0.0063 Score=77.47 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~d 167 (777)
..+=..|||.+|+|||||+.+- |....... .......+|+. ...++.| -...-.+|||+|..-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl~~---------~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~ 173 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPLAE---------RLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYT 173 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcCch---------hhccccccCCC---CCcccceEecCCEEEEcCCCccc
Confidence 4567899999999999999875 32211110 00000001110 0112222 334677999999321
Q ss_pred --------hHHHHHH---HH------HhcCeEEEEEeCCCCCch---HH-------HHHHHHHH---HcCCCEEEEEEcc
Q 004038 168 --------FTLEVER---AL------RVLDGAICLFDSVAGVEP---QS-------ETVWRQAD---KYGVPRICFVNKM 217 (777)
Q Consensus 168 --------f~~~~~~---~l------~~aD~~ilVvda~~g~~~---~~-------~~~~~~~~---~~~~p~iiviNKi 217 (777)
...++.. .+ +-.|++|++||+.+-... +- +.-+..+. ...+|+-+++|||
T Consensus 174 ~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~ 253 (1169)
T TIGR03348 174 TQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKA 253 (1169)
T ss_pred cCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1122222 22 346999999999854421 11 11122222 2378999999999
Q ss_pred CCCC
Q 004038 218 DRLG 221 (777)
Q Consensus 218 D~~~ 221 (777)
|+..
T Consensus 254 Dll~ 257 (1169)
T TIGR03348 254 DLLA 257 (1169)
T ss_pred hhhc
Confidence 9873
No 494
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.15 E-value=0.055 Score=57.26 Aligned_cols=86 Identities=13% Similarity=-0.044 Sum_probs=51.3
Q ss_pred cCeEEEEEeCCCCcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHhHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~~~~~ 230 (777)
+++.+.||||||....... ....+..+|.+|+++.+..--......+++.+...+.+.. ++.|..+.. ...+.+++
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~--~~~~~~~~ 189 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGID--NEVEIVSE 189 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCc--cHHHHHHH
Confidence 4578999999986521111 0111268899999998765444444455555665555543 455655532 23456777
Q ss_pred HHHHhCCCce
Q 004038 231 IVTNLGAKPL 240 (777)
Q Consensus 231 i~~~l~~~~~ 240 (777)
+.+.++....
T Consensus 190 l~~~~~~~vl 199 (264)
T PRK13231 190 FASRIGSRII 199 (264)
T ss_pred HHHHhCCCeE
Confidence 7777776543
No 495
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.10 E-value=0.057 Score=57.48 Aligned_cols=84 Identities=10% Similarity=-0.056 Sum_probs=47.4
Q ss_pred cCeEEEEEeCCCCcchHH-HHHHHHHhcCeEEEEEeCCCCCchHHHHHH---HHHH-HcCCCEE-EEEEccCCCCcchHh
Q 004038 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSETVW---RQAD-KYGVPRI-CFVNKMDRLGANFFR 226 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~-~~~~~l~~aD~~ilVvda~~g~~~~~~~~~---~~~~-~~~~p~i-iviNKiD~~~~~~~~ 226 (777)
+.+.+.||||||...... ....++..||.+|+++.+..-.......++ +..+ ..++++. +++|+... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 457899999988642111 111233479999999977643322233333 3332 2345543 67797431 12345
Q ss_pred HHHHHHHHhCCC
Q 004038 227 TRDMIVTNLGAK 238 (777)
Q Consensus 227 ~~~~i~~~l~~~ 238 (777)
.++.+++.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 677788877764
No 496
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.99 E-value=0.01 Score=58.57 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCchHHHHHHHH--HHHcCCCEEEEEEccCCCC
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~--~~~~~~p~iiviNKiD~~~ 221 (777)
|++++|+|+.++.......+.+. +...+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999999887777777766 4456799999999999965
No 497
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.97 E-value=0.12 Score=57.76 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=56.5
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-------HHHHH--cCCCEEEEEEccCCCCcc
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-------RQADK--YGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-------~~~~~--~~~p~iiviNKiD~~~~~ 223 (777)
+.+.+.|||||+...+ .+..++..||.+|+.+.+..-.......++ ..+.. .+..+-+++|++|.....
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN 310 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch
Confidence 3578999999998764 578899999999999877532111111122 22222 233344789999965433
Q ss_pred -hHhHHHHHHHHhCCCcee
Q 004038 224 -FFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 224 -~~~~~~~i~~~l~~~~~~ 241 (777)
...+.+.+++.+|.....
T Consensus 311 ~~~~i~~~l~~~~g~~vl~ 329 (387)
T PHA02519 311 QSRWMEEQIRNTWGSMVLR 329 (387)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 344778899999876544
No 498
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.88 E-value=0.033 Score=59.31 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=48.7
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHH------hcCeEEEEEeCCCCCchHHHHHH----HHHHHcCCCEE-EEEEccCCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRI-CFVNKMDRLG 221 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~i-iviNKiD~~~ 221 (777)
+.+.+.+|||+|.. +..++. .||.+|+++++..-.......++ +..+..+++++ +|+|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 45789999998743 222333 79999999987633222222222 23334567665 78897431
Q ss_pred cchHhHHHHHHHHhCCCce
Q 004038 222 ANFFRTRDMIVTNLGAKPL 240 (777)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~ 240 (777)
..-.++++++.+.++....
T Consensus 190 ~~~~~~~e~l~~~~~~~~l 208 (275)
T PRK13233 190 DGELELLEEFTDAIGTQMI 208 (275)
T ss_pred CcHHHHHHHHHHHcCCcee
Confidence 1224567888888876543
No 499
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=95.86 E-value=0.11 Score=52.56 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=92.4
Q ss_pred cCCceeeEEEEEee--ccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeee
Q 004038 636 AGFPVVDVRAALVD--GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 713 (777)
Q Consensus 636 ~g~pv~~v~v~l~~--~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~ 713 (777)
.+.-++||.+.++. |-.. --...+.-|=..|.++|+..|...-+.|...++|.++-..+|.|...|.+..++|.+
T Consensus 88 ~~~~l~nv~vVVtRYFGGik---LG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T TIGR00257 88 RGSDLGDIGAVVVRYFGGIL---LGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIK 164 (204)
T ss_pred HHCCCCcEEEEEEEecCCcc---cCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEe
Confidence 46678899888873 2222 122345567778888999999999999999999999999999999999999999999
Q ss_pred eeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004038 714 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 751 (777)
Q Consensus 714 ~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 751 (777)
.+..+ .++++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~--~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 165 SNFSN--NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred eEecC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 98754 4899999999999999999999999997653
No 500
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.86 E-value=0.14 Score=57.28 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=54.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH---HHHHH------cCCCEEEEEEccCCCCcch
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW---RQADK------YGVPRICFVNKMDRLGANF 224 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~---~~~~~------~~~p~iiviNKiD~~~~~~ 224 (777)
.+.+.|||||+... ..+..++..||.+|+++.+..--......++ ..+.. .+..+-+++|+.|......
T Consensus 234 ~YD~IiIDtpP~l~--~~t~nal~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~~ 311 (388)
T PRK13705 234 DYDVIVIDSAPNLG--IGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQ 311 (388)
T ss_pred cCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCchH
Confidence 57899999998754 5678899999999999977532212222222 22222 1223447899998654333
Q ss_pred Hh-HHHHHHHHhCCCce
Q 004038 225 FR-TRDMIVTNLGAKPL 240 (777)
Q Consensus 225 ~~-~~~~i~~~l~~~~~ 240 (777)
.+ +.+.+++.++....
T Consensus 312 ~~~~~~~l~~~~~~~vl 328 (388)
T PRK13705 312 SPWMEEQIRDAWGSMVL 328 (388)
T ss_pred HHHHHHHHHHHhccccc
Confidence 33 66788888876543
Done!