Query 004038
Match_columns 777
No_of_seqs 456 out of 3029
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 2E-140 8E-145 1254.4 70.7 688 84-772 7-708 (709)
2 2rdo_7 EF-G, elongation factor 100.0 4E-137 1E-141 1221.4 80.6 687 86-773 6-703 (704)
3 2xex_A Elongation factor G; GT 100.0 9E-136 3E-140 1208.6 75.6 686 85-773 5-691 (693)
4 1dar_A EF-G, elongation factor 100.0 5E-135 2E-139 1201.8 66.3 681 87-771 9-690 (691)
5 2dy1_A Elongation factor G; tr 100.0 5E-126 2E-130 1121.7 76.0 657 86-774 5-663 (665)
6 3j25_A Tetracycline resistance 100.0 4E-129 1E-133 1142.7 20.7 617 89-765 1-617 (638)
7 1n0u_A EF-2, elongation factor 100.0 3E-117 1E-121 1069.9 51.7 668 87-774 16-824 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 7.4E-92 2.5E-96 810.5 32.3 483 88-593 29-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 1.2E-81 4E-86 727.1 49.2 464 87-760 3-483 (600)
10 3cb4_D GTP-binding protein LEP 100.0 1.1E-79 3.7E-84 712.3 49.0 460 88-760 2-478 (599)
11 3tr5_A RF-3, peptide chain rel 100.0 2.6E-75 8.8E-80 669.2 36.8 459 88-570 11-476 (528)
12 2h5e_A Peptide chain release f 100.0 6E-75 2E-79 667.0 37.6 459 88-570 11-477 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 4.8E-43 1.6E-47 370.6 19.0 198 457-766 2-209 (332)
14 1g7s_A Translation initiation 100.0 2.1E-37 7.2E-42 359.1 17.2 332 89-511 4-373 (594)
15 3j2k_7 ERF3, eukaryotic polype 100.0 2.1E-34 7.2E-39 324.6 30.5 279 86-476 13-329 (439)
16 2c78_A Elongation factor TU-A; 100.0 1.1E-34 3.6E-39 324.4 24.1 271 88-475 9-309 (405)
17 1d2e_A Elongation factor TU (E 100.0 1.3E-34 4.5E-39 322.7 22.8 271 89-474 2-290 (397)
18 1jny_A EF-1-alpha, elongation 100.0 3.1E-34 1.1E-38 323.4 22.6 274 88-476 4-319 (435)
19 3mca_A HBS1, elongation factor 100.0 9.8E-34 3.4E-38 329.5 17.4 276 86-476 173-491 (592)
20 2elf_A Protein translation elo 100.0 4.5E-33 1.5E-37 306.4 20.5 242 91-472 22-275 (370)
21 3p26_A Elongation factor 1 alp 100.0 6.5E-32 2.2E-36 308.4 30.9 281 88-475 31-363 (483)
22 3avx_A Elongation factor TS, e 100.0 1.9E-32 6.7E-37 328.4 22.7 275 86-475 292-582 (1289)
23 1kk1_A EIF2gamma; initiation o 100.0 1E-31 3.5E-36 300.8 27.1 258 87-475 7-317 (410)
24 1r5b_A Eukaryotic peptide chai 100.0 1.3E-32 4.6E-37 312.3 19.5 277 88-476 41-358 (467)
25 1zun_B Sulfate adenylate trans 100.0 1.6E-31 5.4E-36 301.2 28.0 274 88-476 22-328 (434)
26 1f60_A Elongation factor EEF1A 100.0 2E-31 6.9E-36 301.9 25.6 273 88-475 5-329 (458)
27 3izq_1 HBS1P, elongation facto 100.0 4.5E-31 1.5E-35 308.0 25.4 287 87-475 164-497 (611)
28 1s0u_A EIF-2-gamma, translatio 100.0 1.6E-30 5.6E-35 290.7 26.7 257 88-475 6-315 (408)
29 1wb1_A Translation elongation 100.0 4.6E-31 1.6E-35 300.5 16.3 262 88-473 17-284 (482)
30 3sjy_A Translation initiation 100.0 7.2E-30 2.5E-34 285.1 25.4 270 88-476 6-310 (403)
31 1zo1_I IF2, translation initia 100.0 2.7E-32 9.4E-37 308.9 5.4 311 88-538 2-342 (501)
32 3izy_P Translation initiation 100.0 3E-31 1E-35 302.8 7.6 257 89-476 3-261 (537)
33 3iev_A GTP-binding protein ERA 99.8 9.2E-19 3.2E-23 188.1 18.3 117 87-220 7-135 (308)
34 3qq5_A Small GTP-binding prote 99.8 1E-19 3.4E-24 202.7 10.5 121 84-223 28-156 (423)
35 1wf3_A GTP-binding protein; GT 99.8 1.1E-18 3.6E-23 186.8 15.9 117 89-222 6-132 (301)
36 4dhe_A Probable GTP-binding pr 99.8 1.6E-18 5.5E-23 176.4 13.8 123 84-222 23-159 (223)
37 2dyk_A GTP-binding protein; GT 99.8 3.7E-18 1.3E-22 163.7 15.0 116 90-222 1-123 (161)
38 2xtp_A GTPase IMAP family memb 99.8 1.1E-19 3.8E-24 190.2 4.4 203 87-312 19-256 (260)
39 2lkc_A Translation initiation 99.8 1.1E-18 3.8E-23 170.5 9.7 118 88-223 6-123 (178)
40 1svi_A GTP-binding protein YSX 99.8 1.6E-17 5.5E-22 165.0 17.8 120 84-222 17-149 (195)
41 1ega_A Protein (GTP-binding pr 99.7 2E-18 6.9E-23 184.8 10.9 115 89-221 7-130 (301)
42 3iby_A Ferrous iron transport 99.7 4.7E-18 1.6E-22 177.6 13.3 111 91-221 2-124 (256)
43 2hjg_A GTP-binding protein ENG 99.7 9.4E-18 3.2E-22 189.0 16.7 118 88-222 173-301 (436)
44 1upt_A ARL1, ADP-ribosylation 99.7 1.6E-17 5.4E-22 161.0 14.6 114 88-222 5-123 (171)
45 1zj6_A ADP-ribosylation factor 99.7 3.2E-17 1.1E-21 162.1 16.7 113 88-221 14-131 (187)
46 3i8s_A Ferrous iron transport 99.7 8.5E-18 2.9E-22 177.5 12.9 112 90-221 3-126 (274)
47 4bas_A ADP-ribosylation factor 99.7 1.9E-17 6.4E-22 164.9 14.8 119 85-222 12-142 (199)
48 4dcu_A GTP-binding protein ENG 99.7 3E-17 1E-21 185.9 17.9 119 87-222 192-321 (456)
49 1zd9_A ADP-ribosylation factor 99.7 4.3E-17 1.5E-21 161.6 16.7 115 88-222 20-139 (188)
50 1r8s_A ADP-ribosylation factor 99.7 1.3E-16 4.4E-21 153.6 18.8 110 92-222 2-116 (164)
51 1mky_A Probable GTP-binding pr 99.7 2.9E-17 9.9E-22 185.1 15.6 113 91-220 2-123 (439)
52 2h57_A ADP-ribosylation factor 99.7 4E-17 1.4E-21 161.9 14.6 115 88-221 19-140 (190)
53 3pqc_A Probable GTP-binding pr 99.7 7.6E-17 2.6E-21 159.7 16.7 118 85-222 18-148 (195)
54 2b6h_A ADP-ribosylation factor 99.7 1.8E-16 6.3E-21 157.8 19.2 114 88-222 27-145 (192)
55 2h17_A ADP-ribosylation factor 99.7 3E-17 1E-21 161.5 13.4 114 87-221 18-136 (181)
56 1fzq_A ADP-ribosylation factor 99.7 3E-16 1E-20 154.7 20.3 114 88-222 14-132 (181)
57 2efe_B Small GTP-binding prote 99.7 9.3E-17 3.2E-21 157.2 16.2 118 88-221 10-131 (181)
58 2il1_A RAB12; G-protein, GDP, 99.7 9.7E-17 3.3E-21 159.6 16.2 118 86-221 22-145 (192)
59 1r2q_A RAS-related protein RAB 99.7 1.1E-16 3.7E-21 154.6 16.0 117 89-221 5-125 (170)
60 3t1o_A Gliding protein MGLA; G 99.7 2.8E-17 9.6E-22 163.0 11.9 128 88-221 12-149 (198)
61 3a1s_A Iron(II) transport prot 99.7 4.5E-17 1.6E-21 170.3 13.9 112 89-220 4-123 (258)
62 3k53_A Ferrous iron transport 99.7 7.8E-17 2.7E-21 169.8 15.4 112 89-220 2-122 (271)
63 1z0j_A RAB-22, RAS-related pro 99.7 1.3E-16 4.6E-21 154.1 15.7 117 89-221 5-125 (170)
64 2fg5_A RAB-22B, RAS-related pr 99.7 1.3E-16 4.6E-21 158.5 16.1 118 88-221 21-142 (192)
65 2wji_A Ferrous iron transport 99.7 1.1E-16 3.6E-21 155.3 14.9 111 90-220 3-121 (165)
66 2p5s_A RAS and EF-hand domain 99.7 1.5E-16 5.2E-21 159.1 16.2 120 86-221 24-147 (199)
67 2hxs_A RAB-26, RAS-related pro 99.7 2.2E-16 7.7E-21 154.0 17.1 116 88-221 4-129 (178)
68 3tkl_A RAS-related protein RAB 99.7 1.5E-16 5.1E-21 158.0 15.6 117 88-222 14-136 (196)
69 1ksh_A ARF-like protein 2; sma 99.7 7E-17 2.4E-21 159.3 12.9 114 88-222 16-134 (186)
70 1z0f_A RAB14, member RAS oncog 99.7 2.4E-16 8.2E-21 153.7 16.1 119 87-221 12-134 (179)
71 1ek0_A Protein (GTP-binding pr 99.7 2.7E-16 9.3E-21 151.7 16.2 117 90-222 3-123 (170)
72 3bc1_A RAS-related protein RAB 99.7 2.3E-16 7.7E-21 155.9 15.8 118 87-221 8-141 (195)
73 2gf9_A RAS-related protein RAB 99.7 9.1E-17 3.1E-21 159.1 12.5 118 88-221 20-141 (189)
74 2hup_A RAS-related protein RAB 99.7 4.3E-16 1.5E-20 156.3 17.6 117 87-221 26-148 (201)
75 1zbd_A Rabphilin-3A; G protein 99.7 2.6E-16 9E-21 157.5 15.9 118 88-221 6-127 (203)
76 1m2o_B GTP-binding protein SAR 99.7 9.5E-17 3.2E-21 159.6 12.5 112 89-221 22-138 (190)
77 3kkq_A RAS-related protein M-R 99.7 2.7E-16 9.4E-21 154.4 15.6 116 87-221 15-137 (183)
78 2gj8_A MNME, tRNA modification 99.7 2.2E-16 7.6E-21 154.4 14.9 114 90-220 4-128 (172)
79 2hjg_A GTP-binding protein ENG 99.7 4.5E-17 1.6E-21 183.4 11.3 114 91-221 4-125 (436)
80 3tw8_B RAS-related protein RAB 99.7 9.7E-17 3.3E-21 156.7 12.2 117 87-221 6-127 (181)
81 2x77_A ADP-ribosylation factor 99.7 4.2E-17 1.4E-21 161.4 9.6 114 88-222 20-138 (189)
82 2y8e_A RAB-protein 6, GH09086P 99.7 4.2E-16 1.4E-20 151.9 16.3 115 89-221 13-133 (179)
83 2fn4_A P23, RAS-related protei 99.7 4.2E-16 1.4E-20 152.2 15.9 117 86-221 5-128 (181)
84 3llu_A RAS-related GTP-binding 99.7 5.7E-16 2E-20 154.6 17.1 120 84-222 14-144 (196)
85 2g6b_A RAS-related protein RAB 99.7 2.5E-16 8.7E-21 153.9 14.2 117 88-221 8-130 (180)
86 2bme_A RAB4A, RAS-related prot 99.7 3.1E-16 1.1E-20 154.3 14.9 116 88-221 8-129 (186)
87 2oil_A CATX-8, RAS-related pro 99.7 3.5E-16 1.2E-20 155.3 15.4 119 87-221 22-144 (193)
88 1kao_A RAP2A; GTP-binding prot 99.7 3.4E-16 1.2E-20 150.4 14.7 113 90-221 3-122 (167)
89 3b1v_A Ferrous iron uptake tra 99.7 1.2E-16 4.1E-21 168.3 12.4 110 90-220 3-120 (272)
90 2erx_A GTP-binding protein DI- 99.7 8.8E-16 3E-20 148.4 17.6 115 90-221 3-123 (172)
91 1moz_A ARL1, ADP-ribosylation 99.7 8E-17 2.7E-21 158.1 10.4 114 88-222 16-134 (183)
92 1z06_A RAS-related protein RAB 99.7 2.7E-16 9.1E-21 155.7 14.0 117 87-221 17-141 (189)
93 4dsu_A GTPase KRAS, isoform 2B 99.7 5.7E-16 2E-20 152.5 16.3 114 89-221 3-123 (189)
94 2fu5_C RAS-related protein RAB 99.7 1.4E-16 4.9E-21 156.4 11.8 116 88-221 6-127 (183)
95 2wjg_A FEOB, ferrous iron tran 99.7 3.1E-16 1.1E-20 154.7 14.2 112 89-220 6-125 (188)
96 3clv_A RAB5 protein, putative; 99.7 6.6E-16 2.2E-20 153.7 16.6 64 155-218 93-158 (208)
97 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.2E-16 2.5E-20 150.2 16.4 115 88-220 5-129 (177)
98 3dz8_A RAS-related protein RAB 99.7 2.6E-16 9.1E-21 156.1 13.5 118 88-221 21-142 (191)
99 1c1y_A RAS-related protein RAP 99.7 5.9E-16 2E-20 149.1 15.4 115 90-221 3-122 (167)
100 1f6b_A SAR1; gtpases, N-termin 99.7 4.2E-16 1.4E-20 156.1 14.6 113 88-221 23-140 (198)
101 1g16_A RAS-related protein SEC 99.7 3E-16 1E-20 151.6 12.9 114 89-220 2-121 (170)
102 1u8z_A RAS-related protein RAL 99.7 1.5E-15 5.1E-20 146.1 17.8 114 89-221 3-123 (168)
103 3q72_A GTP-binding protein RAD 99.7 8.2E-16 2.8E-20 148.2 15.9 114 90-221 2-120 (166)
104 2a9k_A RAS-related protein RAL 99.7 1E-15 3.5E-20 150.3 16.9 115 88-221 16-137 (187)
105 3cph_A RAS-related protein SEC 99.7 2.9E-16 9.9E-21 158.2 13.2 116 87-220 17-138 (213)
106 3gj0_A GTP-binding nuclear pro 99.7 6.9E-17 2.4E-21 164.4 8.6 121 86-222 11-134 (221)
107 1z2a_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 151.0 12.7 116 88-221 3-123 (168)
108 1mky_A Probable GTP-binding pr 99.7 6.2E-16 2.1E-20 174.2 16.9 118 88-222 178-307 (439)
109 2fh5_B SR-beta, signal recogni 99.7 8.8E-16 3E-20 155.1 16.4 127 88-236 5-145 (214)
110 3t5g_A GTP-binding protein RHE 99.7 1.2E-16 4.2E-21 156.6 9.8 115 88-221 4-125 (181)
111 3o47_A ADP-ribosylation factor 99.7 3.7E-16 1.3E-20 169.3 14.5 113 89-222 164-281 (329)
112 2atx_A Small GTP binding prote 99.7 2.1E-16 7.1E-21 157.1 11.5 116 88-222 16-137 (194)
113 2nzj_A GTP-binding protein REM 99.7 6.5E-16 2.2E-20 150.1 14.7 116 89-221 3-125 (175)
114 2f7s_A C25KG, RAS-related prot 99.7 3.6E-16 1.2E-20 158.3 13.4 117 87-221 22-155 (217)
115 2bov_A RAla, RAS-related prote 99.7 2E-15 6.9E-20 151.0 18.6 117 86-221 10-133 (206)
116 1ky3_A GTP-binding protein YPT 99.7 5E-16 1.7E-20 151.8 13.7 116 88-221 6-132 (182)
117 1x3s_A RAS-related protein RAB 99.7 4.4E-16 1.5E-20 154.3 13.3 117 89-221 14-135 (195)
118 2qu8_A Putative nucleolar GTP- 99.7 2.5E-15 8.7E-20 153.7 19.1 116 88-221 27-156 (228)
119 2ew1_A RAS-related protein RAB 99.7 8E-16 2.7E-20 154.6 14.9 117 87-221 23-145 (201)
120 4dcu_A GTP-binding protein ENG 99.7 2.1E-16 7.2E-21 178.9 11.8 116 89-221 22-145 (456)
121 2a5j_A RAS-related protein RAB 99.7 4.8E-16 1.7E-20 154.2 12.7 116 88-221 19-140 (191)
122 3q85_A GTP-binding protein REM 99.7 1.3E-15 4.4E-20 147.3 15.3 114 90-221 2-123 (169)
123 1mh1_A RAC1; GTP-binding, GTPa 99.7 4.8E-16 1.7E-20 152.6 12.5 117 89-222 4-124 (186)
124 4gzl_A RAS-related C3 botulinu 99.7 4.4E-16 1.5E-20 156.6 12.3 116 88-222 28-149 (204)
125 2ce2_X GTPase HRAS; signaling 99.7 2.4E-15 8.1E-20 144.2 16.9 112 91-221 4-122 (166)
126 1z08_A RAS-related protein RAB 99.6 5.7E-16 2E-20 149.8 12.2 116 88-221 4-125 (170)
127 3lxw_A GTPase IMAP family memb 99.6 7.4E-16 2.5E-20 160.1 13.7 121 88-225 19-157 (247)
128 3oes_A GTPase rhebl1; small GT 99.6 2.5E-16 8.6E-21 157.7 9.7 119 86-221 20-143 (201)
129 3bwd_D RAC-like GTP-binding pr 99.6 2.7E-16 9.4E-21 154.0 9.6 118 88-222 6-127 (182)
130 3t5d_A Septin-7; GTP-binding p 99.6 5.7E-16 1.9E-20 163.5 12.6 199 90-310 8-267 (274)
131 2gf0_A GTP-binding protein DI- 99.6 3E-15 1E-19 148.9 17.1 117 88-221 6-128 (199)
132 2bcg_Y Protein YP2, GTP-bindin 99.6 9.6E-16 3.3E-20 153.9 13.4 116 88-221 6-127 (206)
133 3gee_A MNME, tRNA modification 99.6 4.8E-16 1.6E-20 175.9 12.1 114 90-222 233-358 (476)
134 1vg8_A RAS-related protein RAB 99.6 4.6E-16 1.6E-20 156.0 10.6 115 88-220 6-130 (207)
135 2p67_A LAO/AO transport system 99.6 1.2E-16 4.2E-21 173.9 6.8 239 87-357 53-329 (341)
136 2o52_A RAS-related protein RAB 99.6 9.2E-16 3.1E-20 153.7 12.5 116 88-221 23-144 (200)
137 3con_A GTPase NRAS; structural 99.6 2.5E-15 8.5E-20 148.6 15.2 114 89-221 20-140 (190)
138 3reg_A RHO-like small GTPase; 99.6 1.4E-15 4.8E-20 151.2 12.5 117 88-221 21-141 (194)
139 2j1l_A RHO-related GTP-binding 99.6 3.9E-15 1.3E-19 150.8 16.0 116 88-222 32-153 (214)
140 4djt_A GTP-binding nuclear pro 99.6 4E-16 1.4E-20 158.1 8.5 116 88-221 9-131 (218)
141 3ihw_A Centg3; RAS, centaurin, 99.6 6.1E-15 2.1E-19 145.7 16.7 111 86-221 16-133 (184)
142 2j0v_A RAC-like GTP-binding pr 99.6 1.3E-15 4.3E-20 153.7 11.7 118 88-222 7-128 (212)
143 3lvq_E ARF-GAP with SH3 domain 99.6 2.6E-15 8.7E-20 172.0 15.6 114 88-222 320-438 (497)
144 2atv_A RERG, RAS-like estrogen 99.6 6.6E-15 2.3E-19 146.6 16.6 116 88-221 26-146 (196)
145 1xzp_A Probable tRNA modificat 99.6 1.4E-15 4.8E-20 172.3 13.1 112 91-221 244-364 (482)
146 3cpj_B GTP-binding protein YPT 99.6 1.4E-15 4.9E-20 155.0 11.7 116 88-221 11-132 (223)
147 2q3h_A RAS homolog gene family 99.6 3.1E-15 1E-19 149.5 13.8 117 87-222 17-139 (201)
148 2fv8_A H6, RHO-related GTP-bin 99.6 3.2E-15 1.1E-19 150.4 12.8 115 89-222 24-144 (207)
149 3cbq_A GTP-binding protein REM 99.6 1E-14 3.4E-19 145.7 16.1 116 88-221 21-144 (195)
150 2gco_A H9, RHO-related GTP-bin 99.6 3.4E-15 1.2E-19 149.5 12.8 115 89-222 24-144 (201)
151 2cxx_A Probable GTP-binding pr 99.6 4.9E-15 1.7E-19 146.1 13.5 111 91-223 2-138 (190)
152 3l0i_B RAS-related protein RAB 99.6 8.7E-17 3E-21 160.8 0.2 116 88-221 31-152 (199)
153 2yc2_C IFT27, small RAB-relate 99.6 1.9E-15 6.6E-20 151.3 9.3 118 88-221 18-146 (208)
154 4dkx_A RAS-related protein RAB 99.6 1.3E-14 4.3E-19 147.6 15.2 117 89-221 12-132 (216)
155 3lxx_A GTPase IMAP family memb 99.6 6.6E-16 2.2E-20 159.4 5.4 136 86-238 25-184 (239)
156 3q3j_B RHO-related GTP-binding 99.6 6.1E-15 2.1E-19 149.5 12.2 118 88-222 25-146 (214)
157 3c5c_A RAS-like protein 12; GD 99.6 1.6E-14 5.3E-19 143.1 13.9 116 88-221 19-141 (187)
158 3geh_A MNME, tRNA modification 99.6 1.3E-15 4.5E-20 171.7 6.7 114 90-222 224-345 (462)
159 2iwr_A Centaurin gamma 1; ANK 99.6 3.8E-14 1.3E-18 138.3 16.1 107 89-220 6-121 (178)
160 1m7b_A RND3/RHOE small GTP-bin 99.6 7.3E-15 2.5E-19 144.8 10.0 117 88-221 5-125 (184)
161 1lnz_A SPO0B-associated GTP-bi 99.6 9.3E-15 3.2E-19 158.5 11.5 114 90-221 158-288 (342)
162 3r7w_A Gtpase1, GTP-binding pr 99.5 5.5E-14 1.9E-18 150.8 17.0 116 90-222 3-130 (307)
163 1jwy_B Dynamin A GTPase domain 99.5 1.4E-14 4.9E-19 155.5 11.5 70 153-222 129-213 (315)
164 3th5_A RAS-related C3 botulinu 99.3 6E-16 2.1E-20 155.2 0.0 118 88-222 28-149 (204)
165 2aka_B Dynamin-1; fusion prote 99.5 2.9E-14 9.9E-19 151.8 13.0 136 87-222 23-207 (299)
166 1gwn_A RHO-related GTP-binding 99.5 1.5E-14 5.2E-19 145.7 10.0 117 88-221 26-146 (205)
167 2wkq_A NPH1-1, RAS-related C3 99.5 5E-14 1.7E-18 151.9 13.6 116 88-222 153-274 (332)
168 2qtf_A Protein HFLX, GTP-bindi 99.5 1.5E-13 5E-18 150.6 16.5 116 89-222 178-307 (364)
169 1nrj_B SR-beta, signal recogni 99.5 2.1E-13 7.1E-18 138.0 15.2 114 88-223 10-136 (218)
170 2zej_A Dardarin, leucine-rich 99.5 4.7E-14 1.6E-18 139.1 9.1 114 91-221 3-126 (184)
171 2e87_A Hypothetical protein PH 99.5 4.3E-13 1.5E-17 146.9 17.2 116 88-221 165-294 (357)
172 2g3y_A GTP-binding protein GEM 99.5 4.5E-13 1.5E-17 135.6 14.1 117 88-221 35-159 (211)
173 3def_A T7I23.11 protein; chlor 99.5 3.2E-13 1.1E-17 141.4 13.0 116 88-220 34-164 (262)
174 3dpu_A RAB family protein; roc 99.4 2.3E-13 7.8E-18 157.1 12.9 117 87-221 38-164 (535)
175 1pui_A ENGB, probable GTP-bind 99.4 7.8E-13 2.7E-17 132.8 15.2 118 85-221 21-151 (210)
176 2j69_A Bacterial dynamin-like 99.4 7.7E-13 2.7E-17 156.7 16.4 67 155-221 174-244 (695)
177 1h65_A Chloroplast outer envel 99.4 1.2E-12 4E-17 137.7 15.9 118 88-222 37-169 (270)
178 3p32_A Probable GTPase RV1496/ 99.4 2E-13 6.8E-18 149.4 10.3 127 88-221 77-231 (355)
179 2cjw_A GTP-binding protein GEM 99.4 2E-12 6.7E-17 128.6 14.3 115 89-220 5-127 (192)
180 2ged_A SR-beta, signal recogni 99.4 1.3E-12 4.4E-17 129.3 11.4 126 88-235 46-185 (193)
181 2f9l_A RAB11B, member RAS onco 99.4 2.4E-12 8.2E-17 128.5 13.0 115 89-221 4-124 (199)
182 2wsm_A Hydrogenase expression/ 99.3 1.4E-12 4.7E-17 132.3 9.4 124 88-220 28-167 (221)
183 1wxq_A GTP-binding protein; st 99.3 4.1E-13 1.4E-17 148.6 5.2 82 92-191 2-114 (397)
184 2qpt_A EH domain-containing pr 99.3 2.2E-12 7.5E-17 148.7 11.5 144 87-231 62-243 (550)
185 4a9a_A Ribosome-interacting GT 99.3 1.6E-11 5.3E-16 134.2 17.5 137 89-244 71-229 (376)
186 2x2e_A Dynamin-1; nitration, h 99.3 1.1E-12 3.8E-17 143.4 8.2 135 88-222 29-212 (353)
187 1oix_A RAS-related protein RAB 99.3 1.2E-11 4E-16 122.8 14.3 116 88-221 27-148 (191)
188 2qag_A Septin-2, protein NEDD5 99.3 4.3E-12 1.5E-16 139.0 11.9 123 90-222 37-189 (361)
189 3c5h_A Glucocorticoid receptor 99.3 4.7E-12 1.6E-16 131.9 9.8 44 178-221 162-212 (255)
190 3zvr_A Dynamin-1; hydrolase, D 99.3 6.7E-12 2.3E-16 147.7 12.1 135 88-222 49-232 (772)
191 1udx_A The GTP-binding protein 99.3 2.8E-11 9.7E-16 134.2 15.1 116 88-221 155-283 (416)
192 3r7w_B Gtpase2, GTP-binding pr 99.3 2.9E-11 1E-15 129.1 14.4 113 92-223 1-122 (331)
193 2www_A Methylmalonic aciduria 99.2 4.1E-11 1.4E-15 130.6 13.9 63 152-221 164-226 (349)
194 1yrb_A ATP(GTP)binding protein 99.2 1.4E-10 4.6E-15 120.8 13.4 134 88-222 12-186 (262)
195 2j37_W Signal recognition part 99.2 2.1E-11 7.1E-16 138.2 6.4 216 88-332 99-343 (504)
196 3t34_A Dynamin-related protein 99.2 1.2E-10 4.2E-15 127.4 12.4 69 154-222 135-218 (360)
197 1jal_A YCHF protein; nucleotid 99.0 2E-09 6.8E-14 116.9 12.6 82 91-190 3-108 (363)
198 2qm8_A GTPase/ATPase; G protei 98.9 3.3E-09 1.1E-13 114.9 10.8 127 87-221 52-207 (337)
199 2xxa_A Signal recognition part 98.9 1.1E-08 3.9E-13 114.1 15.3 217 88-334 98-347 (433)
200 2dby_A GTP-binding protein; GD 98.9 3.1E-08 1.1E-12 108.1 17.4 82 91-190 2-111 (368)
201 2qag_C Septin-7; cell cycle, c 98.9 5.6E-09 1.9E-13 115.9 10.7 117 91-221 32-181 (418)
202 2qnr_A Septin-2, protein NEDD5 98.9 8.9E-09 3.1E-13 109.7 11.7 119 90-221 18-169 (301)
203 2hf9_A Probable hydrogenase ni 98.8 1.5E-08 5.1E-13 102.7 11.0 124 88-220 36-177 (226)
204 3kl4_A SRP54, signal recogniti 98.7 1.7E-07 6E-12 104.0 17.9 214 89-332 96-344 (433)
205 2qag_B Septin-6, protein NEDD5 98.7 4.9E-08 1.7E-12 107.9 12.5 137 86-237 38-207 (427)
206 3ec1_A YQEH GTPase; atnos1, at 98.7 1.7E-09 5.7E-14 118.7 -0.4 133 90-237 162-305 (369)
207 3h2y_A GTPase family protein; 98.7 3.6E-09 1.2E-13 116.0 1.6 133 91-238 161-305 (368)
208 4fid_A G protein alpha subunit 98.7 4.3E-08 1.5E-12 105.5 9.6 83 139-221 145-242 (340)
209 3ohm_A Guanine nucleotide-bind 98.6 5.5E-08 1.9E-12 104.2 8.5 83 139-221 151-248 (327)
210 3sop_A Neuronal-specific septi 98.5 3.1E-07 1.1E-11 96.1 11.8 137 91-236 3-170 (270)
211 2ohf_A Protein OLA1, GTP-bindi 98.5 1E-07 3.5E-12 104.5 7.5 85 88-190 20-128 (396)
212 1tq4_A IIGP1, interferon-induc 98.5 1.4E-06 4.7E-11 96.4 16.3 113 90-220 69-188 (413)
213 2v3c_C SRP54, signal recogniti 98.5 1.4E-07 4.9E-12 105.1 8.0 145 89-238 98-267 (432)
214 1cip_A Protein (guanine nucleo 98.5 8.3E-08 2.8E-12 104.3 4.8 81 140-220 178-273 (353)
215 3e1y_E Eukaryotic peptide chai 98.5 2.4E-07 8.2E-12 92.7 7.7 85 386-476 3-91 (204)
216 3dm5_A SRP54, signal recogniti 98.4 1.7E-05 5.8E-10 88.1 20.7 131 89-221 99-253 (443)
217 1zcb_A G alpha I/13; GTP-bindi 98.3 2E-07 6.7E-12 101.7 4.1 79 142-220 188-281 (362)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.4E-06 4.7E-11 95.7 8.5 86 88-190 18-127 (392)
219 4dzz_A Plasmid partitioning pr 98.3 6E-06 2.1E-10 81.9 12.5 143 91-238 2-160 (206)
220 1j8m_F SRP54, signal recogniti 98.1 5.3E-06 1.8E-10 87.9 8.3 143 90-237 98-267 (297)
221 1azs_C GS-alpha; complex (lyas 98.1 1.2E-06 4.1E-11 96.4 3.4 79 142-220 204-297 (402)
222 1u0l_A Probable GTPase ENGC; p 98.1 3.3E-06 1.1E-10 89.8 6.2 64 156-221 64-129 (301)
223 1f5n_A Interferon-induced guan 98.1 2.8E-06 9.5E-11 97.8 6.0 104 88-206 36-148 (592)
224 3cwq_A Para family chromosome 98.0 3.3E-05 1.1E-09 77.4 11.2 142 92-238 2-151 (209)
225 1puj_A YLQF, conserved hypothe 97.9 1.5E-05 5.2E-10 83.8 8.1 61 159-221 3-64 (282)
226 2xtz_A Guanine nucleotide-bind 97.9 7.6E-06 2.6E-10 88.8 5.5 68 153-220 181-263 (354)
227 3l82_B F-box only protein 4; T 97.9 4.3E-05 1.5E-09 75.7 9.9 67 156-222 97-178 (227)
228 2ph1_A Nucleotide-binding prot 97.8 0.00018 6.2E-09 74.5 14.3 87 153-239 127-222 (262)
229 1puj_A YLQF, conserved hypothe 97.8 1.7E-05 5.9E-10 83.3 5.8 60 88-167 118-177 (282)
230 1wcv_1 SOJ, segregation protei 97.7 8.2E-05 2.8E-09 76.8 8.9 84 153-238 110-200 (257)
231 3szr_A Interferon-induced GTP- 97.7 9.3E-05 3.2E-09 86.2 10.0 68 155-222 147-229 (608)
232 2oze_A ORF delta'; para, walke 97.6 0.00024 8.4E-09 74.8 11.9 82 154-237 154-242 (298)
233 1zu4_A FTSY; GTPase, signal re 97.6 0.00015 5.3E-09 77.4 10.1 146 88-238 103-283 (320)
234 3kjh_A CO dehydrogenase/acetyl 97.6 0.00019 6.4E-09 73.2 9.7 86 153-245 130-216 (254)
235 3end_A Light-independent proto 97.6 0.00022 7.6E-09 75.6 10.6 82 153-240 155-241 (307)
236 3e70_C DPA, signal recognition 97.6 0.00011 3.9E-09 78.7 8.2 145 88-237 127-296 (328)
237 3ec1_A YQEH GTPase; atnos1, at 97.6 0.00016 5.4E-09 79.0 9.5 64 156-222 50-113 (369)
238 2yhs_A FTSY, cell division pro 97.6 0.00018 6.3E-09 80.6 10.1 143 88-237 291-466 (503)
239 3l2o_B F-box only protein 4; s 97.6 0.00032 1.1E-08 72.8 10.9 60 163-222 195-263 (312)
240 1g3q_A MIND ATPase, cell divis 97.5 0.00048 1.6E-08 69.7 11.4 81 154-238 111-192 (237)
241 1hyq_A MIND, cell division inh 97.5 0.00055 1.9E-08 70.6 11.9 82 153-238 109-191 (263)
242 2yv5_A YJEQ protein; hydrolase 97.5 0.00019 6.4E-09 76.2 8.1 48 174-221 75-124 (302)
243 2ffh_A Protein (FFH); SRP54, s 97.4 0.00034 1.2E-08 77.5 10.2 145 89-238 97-266 (425)
244 3k9g_A PF-32 protein; ssgcid, 97.4 0.00072 2.5E-08 70.0 11.7 78 153-233 143-222 (267)
245 3cnl_A YLQF, putative uncharac 97.4 5.8E-05 2E-09 78.5 3.2 57 91-168 100-157 (262)
246 3cnl_A YLQF, putative uncharac 97.4 7.9E-05 2.7E-09 77.4 3.6 56 162-221 4-60 (262)
247 3h2y_A GTPase family protein; 97.3 0.00033 1.1E-08 76.4 8.1 54 165-222 56-111 (368)
248 3q9l_A Septum site-determining 97.3 0.00047 1.6E-08 70.8 8.8 83 154-238 113-206 (260)
249 1vma_A Cell division protein F 97.3 0.00047 1.6E-08 73.2 8.7 146 88-238 102-278 (306)
250 1rj9_A FTSY, signal recognitio 97.2 0.001 3.5E-08 70.5 10.3 143 89-238 101-276 (304)
251 2xj4_A MIPZ; replication, cell 97.2 0.00021 7.1E-09 75.1 4.9 82 154-237 103-212 (286)
252 1ls1_A Signal recognition part 97.2 0.0011 3.7E-08 70.0 10.1 145 89-238 97-266 (295)
253 2px0_A Flagellar biosynthesis 97.2 0.00066 2.3E-08 71.7 8.1 146 88-237 103-267 (296)
254 3bfv_A CAPA1, CAPB2, membrane 97.1 0.0019 6.4E-08 67.3 11.1 67 154-221 191-258 (271)
255 3ea0_A ATPase, para family; al 97.1 0.0032 1.1E-07 63.8 12.4 81 154-239 118-201 (245)
256 3cio_A ETK, tyrosine-protein k 97.1 0.0015 5.1E-08 69.1 10.0 66 154-220 213-279 (299)
257 1xe1_A Hypothetical protein PF 97.1 0.0027 9.3E-08 56.3 9.9 77 387-471 32-112 (116)
258 3la6_A Tyrosine-protein kinase 97.0 0.0016 5.6E-08 68.3 9.3 68 154-222 201-269 (286)
259 3q5d_A Atlastin-1; G protein, 97.0 0.0016 5.6E-08 72.3 9.8 26 88-113 65-90 (447)
260 1cp2_A CP2, nitrogenase iron p 96.8 0.0065 2.2E-07 62.6 11.6 84 154-239 115-204 (269)
261 2afh_E Nitrogenase iron protei 96.6 0.0085 2.9E-07 62.6 11.0 84 154-239 118-207 (289)
262 3b9q_A Chloroplast SRP recepto 96.6 0.0096 3.3E-07 62.9 11.3 143 88-237 98-274 (302)
263 3ug7_A Arsenical pump-driving 96.4 0.06 2E-06 58.0 16.3 68 179-247 237-315 (349)
264 3ez9_A Para; DNA binding, wing 96.4 0.0055 1.9E-07 67.5 8.1 90 153-245 246-347 (403)
265 2og2_A Putative signal recogni 96.3 0.014 4.7E-07 63.1 10.2 143 88-237 155-331 (359)
266 3zq6_A Putative arsenical pump 96.1 0.079 2.7E-06 56.4 15.0 67 180-247 223-300 (324)
267 1nij_A Hypothetical protein YJ 96.1 0.019 6.4E-07 61.1 10.0 26 88-113 2-27 (318)
268 3ez2_A Plasmid partition prote 96.0 0.017 5.9E-07 63.3 9.9 90 153-245 243-344 (398)
269 1t9h_A YLOQ, probable GTPase E 95.9 0.0061 2.1E-07 64.5 5.3 48 175-222 83-132 (307)
270 2cve_A Hypothetical protein TT 95.8 0.058 2E-06 52.4 11.3 110 636-750 79-190 (191)
271 1d1n_A Initiation factor 2; be 95.4 0.028 9.6E-07 48.4 6.5 75 392-470 9-88 (99)
272 1t9h_A YLOQ, probable GTPase E 95.4 0.0042 1.4E-07 65.7 1.5 22 90-111 173-194 (307)
273 1vi7_A Hypothetical protein YI 95.4 0.043 1.5E-06 54.4 8.5 111 637-750 92-202 (217)
274 3iqw_A Tail-anchored protein t 95.3 0.15 5.1E-06 54.5 13.3 68 180-247 223-303 (334)
275 2woo_A ATPase GET3; tail-ancho 95.2 0.21 7.2E-06 53.2 14.1 66 180-246 222-299 (329)
276 2rcn_A Probable GTPase ENGC; Y 94.8 0.011 3.9E-07 63.7 2.8 21 91-111 216-236 (358)
277 2yv5_A YJEQ protein; hydrolase 94.8 0.026 9.1E-07 59.5 5.6 21 91-111 166-186 (302)
278 1bif_A 6-phosphofructo-2-kinas 94.8 0.022 7.4E-07 64.0 5.3 108 89-213 38-155 (469)
279 1ihu_A Arsenical pump-driving 94.7 0.13 4.5E-06 59.3 11.8 40 181-220 200-240 (589)
280 2rcn_A Probable GTPase ENGC; Y 94.6 0.097 3.3E-06 56.4 9.6 47 175-222 127-175 (358)
281 3io3_A DEHA2D07832P; chaperone 94.6 0.41 1.4E-05 51.3 14.5 67 180-247 232-312 (348)
282 2crv_A IF-2MT, translation ini 94.5 0.087 3E-06 47.0 7.3 75 393-471 14-97 (120)
283 1np6_A Molybdopterin-guanine d 94.5 0.14 4.7E-06 49.4 9.3 25 89-113 5-29 (174)
284 1ihu_A Arsenical pump-driving 94.4 0.064 2.2E-06 62.0 8.1 67 178-246 489-567 (589)
285 1byi_A Dethiobiotin synthase; 94.4 0.19 6.4E-06 49.8 10.6 95 153-248 107-207 (224)
286 3zvl_A Bifunctional polynucleo 94.2 0.09 3.1E-06 58.0 8.5 91 88-218 256-346 (416)
287 4ido_A Atlastin-1; GTPase, GTP 94.2 0.19 6.3E-06 55.7 10.7 116 87-204 64-194 (457)
288 3ney_A 55 kDa erythrocyte memb 93.7 0.041 1.4E-06 54.2 3.8 29 86-114 15-43 (197)
289 1lvg_A Guanylate kinase, GMP k 93.7 0.031 1E-06 55.0 2.9 23 90-112 4-26 (198)
290 2yvu_A Probable adenylyl-sulfa 93.6 0.43 1.5E-05 45.7 11.2 25 88-112 11-35 (186)
291 1kgd_A CASK, peripheral plasma 93.5 0.043 1.5E-06 52.9 3.7 24 90-113 5-28 (180)
292 3fgn_A Dethiobiotin synthetase 93.4 1.3 4.6E-05 45.0 14.9 81 154-234 126-214 (251)
293 1ye8_A Protein THEP1, hypothet 93.4 0.042 1.4E-06 53.2 3.4 23 92-114 2-24 (178)
294 1zp6_A Hypothetical protein AT 93.0 0.065 2.2E-06 51.7 4.1 24 88-111 7-30 (191)
295 3a00_A Guanylate kinase, GMP k 92.7 0.051 1.7E-06 52.6 2.8 23 91-113 2-24 (186)
296 3c8u_A Fructokinase; YP_612366 92.5 0.073 2.5E-06 52.5 3.7 24 88-111 20-43 (208)
297 3tr0_A Guanylate kinase, GMP k 92.5 0.074 2.5E-06 51.9 3.7 24 90-113 7-30 (205)
298 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.4 0.1 3.4E-06 42.9 3.8 63 686-750 8-70 (76)
299 2p5t_B PEZT; postsegregational 92.4 0.34 1.2E-05 49.3 8.7 29 87-115 29-57 (253)
300 1knq_A Gluconate kinase; ALFA/ 92.3 0.1 3.5E-06 49.6 4.5 27 89-115 7-33 (175)
301 2cvh_A DNA repair and recombin 92.3 0.55 1.9E-05 46.0 9.9 24 89-112 19-42 (220)
302 3tau_A Guanylate kinase, GMP k 92.2 0.088 3E-06 52.0 3.9 26 89-114 7-32 (208)
303 1znw_A Guanylate kinase, GMP k 92.1 0.081 2.8E-06 52.1 3.5 24 89-112 19-42 (207)
304 3fkq_A NTRC-like two-domain pr 92.0 0.64 2.2E-05 50.2 10.8 36 153-190 258-293 (373)
305 1kag_A SKI, shikimate kinase I 91.9 0.093 3.2E-06 49.7 3.6 25 91-115 5-29 (173)
306 3fwy_A Light-independent proto 91.9 0.33 1.1E-05 51.3 8.2 86 153-245 162-252 (314)
307 3asz_A Uridine kinase; cytidin 91.9 0.092 3.1E-06 51.6 3.6 23 89-111 5-27 (211)
308 4gp7_A Metallophosphoesterase; 91.8 0.079 2.7E-06 50.6 2.9 22 90-111 9-30 (171)
309 1z6g_A Guanylate kinase; struc 91.8 0.08 2.7E-06 52.8 3.1 25 88-112 21-45 (218)
310 4eun_A Thermoresistant glucoki 91.7 0.11 3.7E-06 50.8 3.9 28 89-116 28-55 (200)
311 3kb2_A SPBC2 prophage-derived 91.7 0.1 3.6E-06 49.1 3.6 25 91-115 2-26 (173)
312 1s96_A Guanylate kinase, GMP k 91.6 0.1 3.5E-06 52.2 3.6 26 88-113 14-39 (219)
313 1htw_A HI0065; nucleotide-bind 91.5 0.095 3.2E-06 49.6 3.1 25 88-112 31-55 (158)
314 3lw7_A Adenylate kinase relate 91.4 0.12 4E-06 48.6 3.6 25 91-116 2-26 (179)
315 1zo1_I IF2, translation initia 91.4 0.53 1.8E-05 53.0 9.5 74 394-471 413-491 (501)
316 2bbw_A Adenylate kinase 4, AK4 91.4 0.13 4.5E-06 52.1 4.2 28 90-117 27-54 (246)
317 2ghi_A Transport protein; mult 91.4 0.13 4.4E-06 52.9 4.1 32 89-123 45-76 (260)
318 2j41_A Guanylate kinase; GMP, 91.3 0.12 4E-06 50.5 3.7 23 90-112 6-28 (207)
319 1ukz_A Uridylate kinase; trans 91.3 0.16 5.6E-06 49.5 4.7 29 87-115 12-40 (203)
320 3vaa_A Shikimate kinase, SK; s 91.2 0.13 4.5E-06 50.2 3.9 28 88-115 23-50 (199)
321 1xjc_A MOBB protein homolog; s 91.2 0.12 4.1E-06 49.5 3.4 24 89-112 3-26 (169)
322 3t61_A Gluconokinase; PSI-biol 91.1 0.14 4.7E-06 50.1 3.9 26 90-115 18-43 (202)
323 2qor_A Guanylate kinase; phosp 91.1 0.12 4.1E-06 50.7 3.4 27 88-114 10-36 (204)
324 2vhj_A Ntpase P4, P4; non- hyd 90.9 0.29 1E-05 51.7 6.3 23 91-113 124-146 (331)
325 3tif_A Uncharacterized ABC tra 90.9 0.11 3.6E-06 52.7 2.9 27 89-118 30-56 (235)
326 1y63_A LMAJ004144AAA protein; 90.8 0.18 6.1E-06 48.6 4.4 26 88-113 8-33 (184)
327 2pcj_A ABC transporter, lipopr 90.8 0.11 3.9E-06 52.0 3.0 25 90-117 30-54 (224)
328 3trf_A Shikimate kinase, SK; a 90.8 0.14 4.9E-06 49.0 3.7 26 90-115 5-30 (185)
329 4fcw_A Chaperone protein CLPB; 90.8 0.98 3.4E-05 46.9 10.5 24 90-113 47-70 (311)
330 3a4m_A L-seryl-tRNA(SEC) kinas 90.8 0.67 2.3E-05 47.3 9.0 24 90-113 4-27 (260)
331 2rhm_A Putative kinase; P-loop 90.8 0.18 6.1E-06 48.5 4.3 27 89-115 4-30 (193)
332 3iij_A Coilin-interacting nucl 90.7 0.16 5.6E-06 48.5 3.9 28 88-115 9-36 (180)
333 2bdt_A BH3686; alpha-beta prot 90.7 0.13 4.5E-06 49.6 3.3 22 91-112 3-24 (189)
334 1cke_A CK, MSSA, protein (cyti 90.7 0.16 5.6E-06 50.3 4.0 25 91-115 6-30 (227)
335 2f1r_A Molybdopterin-guanine d 90.5 0.079 2.7E-06 50.9 1.5 21 91-111 3-23 (171)
336 2qi9_C Vitamin B12 import ATP- 90.5 0.18 6.1E-06 51.5 4.2 25 90-117 26-50 (249)
337 2onk_A Molybdate/tungstate ABC 90.4 0.14 4.6E-06 52.1 3.1 25 91-118 25-49 (240)
338 3izy_P Translation initiation 90.3 0.98 3.4E-05 51.3 10.4 79 391-470 449-533 (537)
339 1ex7_A Guanylate kinase; subst 90.2 0.14 4.8E-06 49.9 2.9 24 91-114 2-25 (186)
340 1ly1_A Polynucleotide kinase; 90.2 0.16 5.5E-06 48.1 3.4 22 91-112 3-24 (181)
341 1uf9_A TT1252 protein; P-loop, 90.2 0.2 7E-06 48.5 4.2 26 88-113 6-31 (203)
342 3umf_A Adenylate kinase; rossm 90.2 0.23 7.8E-06 49.6 4.5 33 84-116 23-55 (217)
343 3cm0_A Adenylate kinase; ATP-b 90.1 0.19 6.5E-06 48.1 3.9 26 90-115 4-29 (186)
344 2if2_A Dephospho-COA kinase; a 90.1 0.16 5.4E-06 49.6 3.3 22 91-112 2-23 (204)
345 2c95_A Adenylate kinase 1; tra 90.0 0.21 7.3E-06 48.1 4.1 27 89-115 8-34 (196)
346 3b85_A Phosphate starvation-in 90.0 0.14 4.9E-06 50.7 2.8 20 92-111 24-43 (208)
347 3aez_A Pantothenate kinase; tr 89.9 0.2 6.8E-06 53.0 4.1 25 87-111 87-111 (312)
348 1b0u_A Histidine permease; ABC 89.9 0.15 5E-06 52.5 3.0 26 89-117 31-56 (262)
349 2qt1_A Nicotinamide riboside k 89.9 0.21 7.2E-06 48.9 4.0 24 88-111 19-42 (207)
350 2wwf_A Thymidilate kinase, put 89.8 0.2 6.8E-06 49.0 3.8 25 89-113 9-33 (212)
351 1jjv_A Dephospho-COA kinase; P 89.8 0.17 5.8E-06 49.5 3.3 21 91-111 3-23 (206)
352 2cbz_A Multidrug resistance-as 89.8 0.16 5.5E-06 51.4 3.1 23 89-111 30-52 (237)
353 4g1u_C Hemin import ATP-bindin 89.8 0.15 5.1E-06 52.6 2.9 23 89-111 36-58 (266)
354 1mv5_A LMRA, multidrug resista 89.8 0.16 5.6E-06 51.5 3.2 27 89-118 27-53 (243)
355 2pze_A Cystic fibrosis transme 89.8 0.16 5.6E-06 51.0 3.2 22 90-111 34-55 (229)
356 1tev_A UMP-CMP kinase; ploop, 89.8 0.21 7.2E-06 47.9 3.9 26 90-115 3-28 (196)
357 2v9p_A Replication protein E1; 89.8 0.18 6.1E-06 53.1 3.5 25 88-112 124-148 (305)
358 3gfo_A Cobalt import ATP-bindi 89.8 0.15 5.2E-06 52.9 3.0 26 90-118 34-59 (275)
359 2jaq_A Deoxyguanosine kinase; 89.8 0.19 6.6E-06 48.6 3.7 24 92-115 2-25 (205)
360 1g6h_A High-affinity branched- 89.8 0.16 5.5E-06 52.1 3.1 25 90-117 33-57 (257)
361 2d2e_A SUFC protein; ABC-ATPas 89.7 0.17 5.9E-06 51.6 3.3 22 90-111 29-50 (250)
362 2eyu_A Twitching motility prot 89.7 0.2 6.8E-06 51.5 3.8 24 88-111 23-46 (261)
363 3uie_A Adenylyl-sulfate kinase 89.7 0.19 6.7E-06 49.0 3.6 24 89-112 24-47 (200)
364 1sgw_A Putative ABC transporte 89.7 0.16 5.5E-06 50.6 3.0 25 91-118 36-60 (214)
365 3of5_A Dethiobiotin synthetase 89.7 0.95 3.3E-05 45.3 8.8 87 153-239 109-201 (228)
366 4a1f_A DNAB helicase, replicat 89.6 0.34 1.1E-05 51.8 5.6 24 90-113 46-69 (338)
367 2ff7_A Alpha-hemolysin translo 89.5 0.17 5.9E-06 51.5 3.1 22 90-111 35-56 (247)
368 2i3b_A HCR-ntpase, human cance 89.5 0.17 6E-06 49.3 3.1 21 92-112 3-23 (189)
369 1qhx_A CPT, protein (chloramph 89.5 0.24 8.2E-06 47.0 4.0 25 91-115 4-28 (178)
370 3qxc_A Dethiobiotin synthetase 89.5 2.2 7.5E-05 43.1 11.3 83 153-235 130-217 (242)
371 3gd7_A Fusion complex of cysti 89.4 0.33 1.1E-05 52.9 5.4 32 89-123 46-77 (390)
372 1ji0_A ABC transporter; ATP bi 89.4 0.18 6.1E-06 51.1 3.1 25 90-117 32-56 (240)
373 2olj_A Amino acid ABC transpor 89.3 0.18 6.2E-06 51.9 3.2 28 88-118 48-75 (263)
374 1u0l_A Probable GTPase ENGC; p 89.3 0.18 6E-06 53.0 3.1 21 91-111 170-190 (301)
375 1rz3_A Hypothetical protein rb 89.3 0.25 8.4E-06 48.4 4.0 26 87-112 19-44 (201)
376 1nks_A Adenylate kinase; therm 89.3 0.21 7.1E-06 47.9 3.4 24 91-114 2-25 (194)
377 3tqc_A Pantothenate kinase; bi 89.3 0.23 7.9E-06 52.6 4.0 26 87-112 89-114 (321)
378 2zu0_C Probable ATP-dependent 89.2 0.2 6.8E-06 51.7 3.4 23 89-111 45-67 (267)
379 2ehv_A Hypothetical protein PH 89.2 0.2 6.9E-06 50.3 3.4 22 90-111 30-51 (251)
380 2jeo_A Uridine-cytidine kinase 89.1 0.26 8.9E-06 49.9 4.1 28 88-115 23-50 (245)
381 3fb4_A Adenylate kinase; psych 89.1 0.23 7.8E-06 48.9 3.6 25 92-116 2-26 (216)
382 1vpl_A ABC transporter, ATP-bi 89.1 0.2 6.7E-06 51.4 3.2 26 89-117 40-65 (256)
383 3lnc_A Guanylate kinase, GMP k 89.1 0.15 5.1E-06 51.0 2.3 23 89-111 26-48 (231)
384 1sxj_A Activator 1 95 kDa subu 89.1 1.2 4.1E-05 50.3 10.1 27 89-115 76-102 (516)
385 1aky_A Adenylate kinase; ATP:A 89.1 0.25 8.5E-06 48.9 3.9 26 90-115 4-29 (220)
386 1qf9_A UMP/CMP kinase, protein 89.1 0.32 1.1E-05 46.6 4.5 26 90-115 6-31 (194)
387 3ec2_A DNA replication protein 89.1 0.17 5.7E-06 48.5 2.5 23 89-111 37-59 (180)
388 1zd8_A GTP:AMP phosphotransfer 89.0 0.26 8.7E-06 49.1 4.0 27 89-115 6-32 (227)
389 3dl0_A Adenylate kinase; phosp 89.0 0.24 8.3E-06 48.8 3.7 24 92-115 2-25 (216)
390 4a74_A DNA repair and recombin 89.0 0.2 6.9E-06 49.5 3.2 22 90-111 25-46 (231)
391 2v54_A DTMP kinase, thymidylat 89.0 0.25 8.5E-06 48.0 3.7 23 90-112 4-26 (204)
392 2wbm_A MTHSBDS, ribosome matur 88.9 0.82 2.8E-05 46.2 7.5 67 684-751 183-249 (252)
393 3pfi_A Holliday junction ATP-d 88.8 1.2 4.1E-05 46.9 9.4 25 89-113 54-78 (338)
394 2cdn_A Adenylate kinase; phosp 88.8 0.3 1E-05 47.5 4.3 27 89-115 19-45 (201)
395 1nn5_A Similar to deoxythymidy 88.8 0.25 8.4E-06 48.4 3.6 25 88-112 7-31 (215)
396 1odf_A YGR205W, hypothetical 3 88.8 0.26 8.8E-06 51.5 3.9 25 87-111 28-52 (290)
397 2yz2_A Putative ABC transporte 88.8 0.21 7.1E-06 51.5 3.1 23 89-111 32-54 (266)
398 1kht_A Adenylate kinase; phosp 88.8 0.23 7.7E-06 47.6 3.2 24 91-114 4-27 (192)
399 2plr_A DTMP kinase, probable t 88.8 0.28 9.7E-06 47.8 4.0 26 90-115 4-29 (213)
400 4e22_A Cytidylate kinase; P-lo 88.8 0.28 9.7E-06 49.9 4.1 28 89-116 26-53 (252)
401 2ihy_A ABC transporter, ATP-bi 88.7 0.21 7.2E-06 51.9 3.2 23 89-111 46-68 (279)
402 2ixe_A Antigen peptide transpo 88.7 0.21 7.2E-06 51.6 3.1 23 89-111 44-66 (271)
403 3tlx_A Adenylate kinase 2; str 88.7 0.32 1.1E-05 49.3 4.4 29 88-116 27-55 (243)
404 2vli_A Antibiotic resistance p 88.7 0.21 7.1E-06 47.6 2.9 26 90-115 5-30 (183)
405 2nq2_C Hypothetical ABC transp 88.5 0.22 7.7E-06 50.9 3.1 25 90-117 31-55 (253)
406 1via_A Shikimate kinase; struc 88.5 0.24 8.3E-06 47.0 3.2 25 91-115 5-29 (175)
407 2v1u_A Cell division control p 88.5 1 3.5E-05 48.0 8.6 25 88-112 42-66 (387)
408 1sq5_A Pantothenate kinase; P- 88.4 0.28 9.6E-06 51.6 4.0 24 88-111 78-101 (308)
409 2gza_A Type IV secretion syste 88.4 0.2 7E-06 54.0 2.9 22 90-111 175-196 (361)
410 3hr8_A Protein RECA; alpha and 88.4 1.5 5.1E-05 47.1 9.6 25 89-113 60-84 (356)
411 1zak_A Adenylate kinase; ATP:A 88.3 0.28 9.6E-06 48.6 3.7 26 90-115 5-30 (222)
412 1vht_A Dephospho-COA kinase; s 88.1 0.29 1E-05 48.3 3.7 22 90-111 4-25 (218)
413 2bwj_A Adenylate kinase 5; pho 88.1 0.31 1.1E-05 47.0 3.8 25 91-115 13-37 (199)
414 2vp4_A Deoxynucleoside kinase; 88.0 0.24 8.4E-06 49.6 3.0 26 86-111 16-41 (230)
415 1zuh_A Shikimate kinase; alpha 88.0 0.31 1.1E-05 45.9 3.6 26 90-115 7-32 (168)
416 3kta_A Chromosome segregation 88.0 0.32 1.1E-05 46.4 3.7 24 92-115 28-51 (182)
417 1hqc_A RUVB; extended AAA-ATPa 87.8 1.7 5.9E-05 45.3 9.7 24 90-113 38-61 (324)
418 1uj2_A Uridine-cytidine kinase 87.8 0.35 1.2E-05 49.1 4.1 28 88-115 20-47 (252)
419 3jvv_A Twitching mobility prot 87.7 0.27 9.2E-06 53.0 3.3 21 91-111 124-144 (356)
420 2pjz_A Hypothetical protein ST 87.6 0.28 9.6E-06 50.5 3.2 25 90-117 30-54 (263)
421 1d2n_A N-ethylmaleimide-sensit 87.6 2.7 9.1E-05 42.8 10.7 27 87-113 61-87 (272)
422 2r8r_A Sensor protein; KDPD, P 87.5 1.7 5.9E-05 43.4 8.8 36 90-125 6-44 (228)
423 3tui_C Methionine import ATP-b 87.5 0.27 9.3E-06 53.0 3.1 23 89-111 53-75 (366)
424 2kjq_A DNAA-related protein; s 87.5 0.26 9.1E-06 45.9 2.7 23 89-111 35-57 (149)
425 2iyv_A Shikimate kinase, SK; t 87.5 0.29 9.8E-06 46.8 3.0 25 91-115 3-27 (184)
426 2pt5_A Shikimate kinase, SK; a 87.4 0.35 1.2E-05 45.3 3.6 24 92-115 2-25 (168)
427 2bbs_A Cystic fibrosis transme 87.4 0.29 1E-05 51.1 3.2 28 88-118 62-89 (290)
428 2pt7_A CAG-ALFA; ATPase, prote 87.3 0.23 7.8E-06 52.9 2.4 21 91-111 172-192 (330)
429 3n70_A Transport activator; si 87.2 1 3.5E-05 41.3 6.6 22 90-111 24-45 (145)
430 1gvn_B Zeta; postsegregational 87.2 0.36 1.2E-05 50.3 3.8 28 87-114 30-57 (287)
431 3nh6_A ATP-binding cassette SU 87.2 0.2 6.8E-06 52.8 1.8 24 88-111 78-101 (306)
432 1e6c_A Shikimate kinase; phosp 87.1 0.33 1.1E-05 45.7 3.2 25 91-115 3-27 (173)
433 1e4v_A Adenylate kinase; trans 87.1 0.38 1.3E-05 47.4 3.7 24 92-115 2-25 (214)
434 2chg_A Replication factor C sm 87.1 0.9 3.1E-05 43.9 6.5 23 90-112 38-60 (226)
435 2ze6_A Isopentenyl transferase 87.1 0.38 1.3E-05 49.0 3.8 25 91-115 2-26 (253)
436 3bgw_A DNAB-like replicative h 87.1 1 3.4E-05 50.0 7.5 25 89-113 196-220 (444)
437 2pez_A Bifunctional 3'-phospho 87.0 0.38 1.3E-05 45.8 3.6 23 90-112 5-27 (179)
438 2oap_1 GSPE-2, type II secreti 86.9 0.36 1.2E-05 54.6 3.9 21 91-111 261-281 (511)
439 1ak2_A Adenylate kinase isoenz 86.8 0.43 1.5E-05 47.8 4.0 27 89-115 15-41 (233)
440 3fvq_A Fe(3+) IONS import ATP- 86.7 0.32 1.1E-05 52.3 3.2 26 90-118 30-55 (359)
441 3syl_A Protein CBBX; photosynt 86.6 1.2 4.1E-05 46.2 7.5 26 88-113 65-90 (309)
442 2ewv_A Twitching motility prot 86.6 0.37 1.3E-05 52.2 3.7 25 88-112 134-158 (372)
443 2pbr_A DTMP kinase, thymidylat 86.4 0.36 1.2E-05 46.3 3.1 21 92-112 2-22 (195)
444 1u94_A RECA protein, recombina 86.3 1.4 4.7E-05 47.4 7.9 25 89-113 62-86 (356)
445 2axn_A 6-phosphofructo-2-kinas 86.2 0.84 2.9E-05 51.7 6.4 39 179-217 117-155 (520)
446 1z47_A CYSA, putative ABC-tran 86.2 0.35 1.2E-05 52.0 3.1 26 90-118 41-66 (355)
447 2f6r_A COA synthase, bifunctio 86.1 0.46 1.6E-05 49.2 3.9 24 88-111 73-96 (281)
448 2zr9_A Protein RECA, recombina 86.0 1.3 4.4E-05 47.5 7.5 24 89-112 60-83 (349)
449 1f2t_A RAD50 ABC-ATPase; DNA d 86.0 0.43 1.5E-05 44.4 3.3 22 92-113 25-46 (149)
450 2yyz_A Sugar ABC transporter, 85.9 0.36 1.2E-05 52.0 3.1 27 89-118 28-54 (359)
451 1jbk_A CLPB protein; beta barr 85.9 0.51 1.7E-05 44.5 3.9 25 89-113 42-66 (195)
452 1lw7_A Transcriptional regulat 85.9 0.34 1.2E-05 52.2 2.9 22 90-111 170-191 (365)
453 3nwj_A ATSK2; P loop, shikimat 85.8 0.42 1.4E-05 48.8 3.3 26 90-115 48-73 (250)
454 3igf_A ALL4481 protein; two-do 85.8 2.2 7.5E-05 46.1 9.2 21 91-111 3-23 (374)
455 1gtv_A TMK, thymidylate kinase 85.8 0.2 6.9E-06 49.1 1.0 22 92-113 2-23 (214)
456 3be4_A Adenylate kinase; malar 85.7 0.42 1.5E-05 47.2 3.3 25 91-115 6-30 (217)
457 2it1_A 362AA long hypothetical 85.7 0.38 1.3E-05 51.8 3.1 27 89-118 28-54 (362)
458 2z0h_A DTMP kinase, thymidylat 85.7 0.39 1.3E-05 46.2 2.9 20 92-111 2-21 (197)
459 1p9r_A General secretion pathw 85.7 0.4 1.4E-05 52.8 3.3 24 90-113 167-190 (418)
460 3rlf_A Maltose/maltodextrin im 85.6 0.39 1.3E-05 52.1 3.1 26 90-118 29-54 (381)
461 1t95_A Hypothetical protein AF 85.6 1.1 3.8E-05 44.9 6.2 67 685-752 169-235 (240)
462 3b9p_A CG5977-PA, isoform A; A 85.6 2.3 8E-05 43.8 9.1 25 89-113 53-77 (297)
463 3r20_A Cytidylate kinase; stru 85.5 0.51 1.7E-05 47.6 3.7 27 89-115 8-34 (233)
464 1g29_1 MALK, maltose transport 85.5 0.39 1.3E-05 52.0 3.1 26 90-118 29-54 (372)
465 3lda_A DNA repair protein RAD5 85.5 3.8 0.00013 44.6 11.0 22 90-111 178-199 (400)
466 1v43_A Sugar-binding transport 85.4 0.4 1.4E-05 51.9 3.1 32 89-123 36-68 (372)
467 3sr0_A Adenylate kinase; phosp 85.4 0.51 1.7E-05 46.6 3.6 25 92-116 2-26 (206)
468 2x8a_A Nuclear valosin-contain 85.3 0.75 2.6E-05 47.4 5.0 25 90-114 44-68 (274)
469 4b4t_L 26S protease subunit RP 85.1 3 0.0001 46.0 9.9 31 85-115 210-240 (437)
470 2xb4_A Adenylate kinase; ATP-b 84.9 0.54 1.8E-05 46.7 3.6 24 92-115 2-25 (223)
471 2b8t_A Thymidine kinase; deoxy 84.9 1.3 4.4E-05 44.2 6.4 43 180-222 89-131 (223)
472 1ixz_A ATP-dependent metallopr 84.8 0.57 2E-05 47.3 3.8 24 90-113 49-72 (254)
473 2w0m_A SSO2452; RECA, SSPF, un 84.8 0.5 1.7E-05 46.6 3.3 22 90-111 23-44 (235)
474 1m7g_A Adenylylsulfate kinase; 84.7 0.57 2E-05 46.0 3.7 24 89-112 24-47 (211)
475 3u61_B DNA polymerase accessor 84.6 6.3 0.00022 41.0 12.1 42 180-221 105-150 (324)
476 1r6b_X CLPA protein; AAA+, N-t 84.6 4.4 0.00015 47.9 12.0 94 89-205 487-582 (758)
477 1fnn_A CDC6P, cell division co 84.5 4.9 0.00017 42.7 11.4 24 90-113 44-67 (389)
478 2grj_A Dephospho-COA kinase; T 84.4 0.7 2.4E-05 45.0 4.0 28 88-115 10-37 (192)
479 2zts_A Putative uncharacterize 84.3 3.2 0.00011 41.1 9.2 23 91-113 31-53 (251)
480 3pvs_A Replication-associated 84.2 4.3 0.00015 44.9 10.9 25 90-114 50-74 (447)
481 3d31_A Sulfate/molybdate ABC t 84.1 0.35 1.2E-05 51.9 1.9 26 90-118 26-51 (348)
482 1xp8_A RECA protein, recombina 83.9 2 6.7E-05 46.3 7.7 24 90-113 74-97 (366)
483 3qf7_A RAD50; ABC-ATPase, ATPa 83.5 0.57 1.9E-05 50.6 3.3 22 92-113 25-46 (365)
484 1q3t_A Cytidylate kinase; nucl 83.3 0.77 2.6E-05 46.0 4.0 28 88-115 14-41 (236)
485 4eaq_A DTMP kinase, thymidylat 83.3 0.78 2.7E-05 45.9 4.0 27 88-114 24-50 (229)
486 1cr0_A DNA primase/helicase; R 83.3 0.59 2E-05 48.5 3.2 24 88-111 33-56 (296)
487 2qp9_X Vacuolar protein sortin 83.2 2.3 7.7E-05 45.5 7.9 28 88-115 82-109 (355)
488 1g7s_A Translation initiation 83.2 4 0.00014 46.9 10.4 80 388-472 462-548 (594)
489 1xwi_A SKD1 protein; VPS4B, AA 83.2 3.3 0.00011 43.5 9.1 27 88-114 43-69 (322)
490 3ake_A Cytidylate kinase; CMP 83.0 0.74 2.5E-05 44.6 3.6 24 92-115 4-27 (208)
491 1iy2_A ATP-dependent metallopr 82.8 0.76 2.6E-05 47.2 3.8 24 90-113 73-96 (278)
492 1lv7_A FTSH; alpha/beta domain 82.7 0.83 2.8E-05 46.2 4.0 26 89-114 44-69 (257)
493 2npi_A Protein CLP1; CLP1-PCF1 82.7 0.61 2.1E-05 52.0 3.2 23 89-111 137-159 (460)
494 1oxx_K GLCV, glucose, ABC tran 82.7 0.35 1.2E-05 52.0 1.1 27 89-118 30-56 (353)
495 2p65_A Hypothetical protein PF 82.7 0.64 2.2E-05 43.8 2.9 25 89-113 42-66 (187)
496 3cmu_A Protein RECA, recombina 82.6 3 0.0001 54.2 9.8 26 88-113 1425-1450(2050)
497 1in4_A RUVB, holliday junction 82.6 0.73 2.5E-05 48.9 3.7 26 90-115 51-76 (334)
498 1q57_A DNA primase/helicase; d 82.6 1.8 6.3E-05 48.6 7.2 26 89-114 241-266 (503)
499 3io5_A Recombination and repai 82.5 9.9 0.00034 40.0 12.0 21 92-112 30-50 (333)
500 3d8b_A Fidgetin-like protein 1 82.4 2.1 7.2E-05 45.8 7.3 27 88-114 115-141 (357)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-140 Score=1254.41 Aligned_cols=688 Identities=59% Similarity=0.972 Sum_probs=632.0
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-------CeE
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHR 156 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------~~~ 156 (777)
..|.+++|||+|+||+|||||||+++|++.+|.+.+.|+++.|++++|+++.|++|||||+++..++.|+ ++.
T Consensus 7 ~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp CSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEE
T ss_pred CCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 3456889999999999999999999999999999999999999999999999999999999999999995 589
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhC
Q 004038 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236 (777)
Q Consensus 157 i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~ 236 (777)
|||||||||.||..|+.++++.+|+||+||||.+|++.||+.+|+++.++++|+++|||||||..+++..+++++++.|+
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Q 004038 237 AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEP 316 (777)
Q Consensus 237 ~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 316 (777)
..+.++++|++.+..|.|++|++.+++++|.+...|+.+...++|.++.+....+|..++|.+++.||+++++|+++..+
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004038 317 DEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (777)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (777)
+.+++...++.....+.++|++++||+++.|++.|||+|++++|+|.+++..+....++......+.|++++|++++|||
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK 326 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFK 326 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEE
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999887766544433444566789999999999999
Q ss_pred EeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCc
Q 004038 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (777)
Q Consensus 397 ~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~ 476 (777)
+.+|++.|+++|+|||||+|++||.|+|..+++++++++++.++|+++++++++.|||||+|.|++++.+|||||+.+.+
T Consensus 327 ~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 327 IATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKP 406 (709)
T ss_dssp CCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSC
T ss_pred eecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEE
Q 004038 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANV 556 (777)
Q Consensus 477 ~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~ 556 (777)
..++++.+|+|+++++|+|++++|++||.++|++|+++||+|+++.+++|||++|+|||||||||+++||+++||+++++
T Consensus 407 ~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~v 486 (709)
T 4fn5_A 407 IILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANI 486 (709)
T ss_dssp CBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCC
T ss_pred ccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeeEEeeeecc-ceeeeEeeeccCCCCceEEEEEEEeecc------CCCCcEEEecccCCcCccccHHHHHHHHHHH
Q 004038 557 GAPQVNYRESISKV-SEVKYVHKKQSGGQGQFADITVRFEPME------AGSGYEFKSEIKGGAVPKEYIPGVMKGLEEC 629 (777)
Q Consensus 557 ~~p~V~yrEti~~~-~~~~~~~~~~~g~~~~~~~v~~~~~P~~------~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a 629 (777)
++|+|+|||||++. ++.+++|++|+++++||++++++++|.+ .++++.|.+++.++.+|++|+++|++||+||
T Consensus 487 s~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a 566 (709)
T 4fn5_A 487 GKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQ 566 (709)
T ss_dssp BCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHH
T ss_pred eeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHHH
Confidence 99999999999874 5678999999999999999999999973 4678999999999999999999999999999
Q ss_pred HHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCc
Q 004038 630 MSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRG 709 (777)
Q Consensus 630 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg 709 (777)
+++||||||||+||+|+|.|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|+||++|+|+||++|++|||
T Consensus 567 ~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG 646 (709)
T 4fn5_A 567 MKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRG 646 (709)
T ss_dssp HHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTC
T ss_pred HhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHH
Q 004038 710 QINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 772 (777)
Q Consensus 710 ~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 772 (777)
+|++++..+ +..+|+|++|++|||||+++||++|+|+|+|+|+|+||++||+++++++|++.
T Consensus 647 ~i~~~~~~~-~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 647 LIQGMEDTV-SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp EEEEEEECS-SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC
T ss_pred EEeceEecC-CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHhc
Confidence 999999887 66789999999999999999999999999999999999999999999999864
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.7e-137 Score=1221.37 Aligned_cols=687 Identities=60% Similarity=0.976 Sum_probs=656.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-------eEEE
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRIN 158 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-------~~i~ 158 (777)
+.+++|||+|+||+|||||||+++|++.+|.+...|.++.|.+++|+++.|+++|+|+......+.|++ +.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 457789999999999999999999999999888888899999999999999999999999999999988 9999
Q ss_pred EEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCC
Q 004038 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAK 238 (777)
Q Consensus 159 liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~ 238 (777)
|||||||.||..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+..+++.++++++++.|+.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Q 004038 239 PLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (777)
Q Consensus 239 ~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 318 (777)
+.++++|++.+..|+|++|++.+++++|++...|..+...++|+++.+...++|.+|+|.+++.||++||+||+|+.++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999997644577788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEe
Q 004038 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (777)
Q Consensus 319 ~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~ 398 (777)
++++..+++.+..+.++||+|+||++|.|++.|||+|++++|+|.+++..++.....+.....+.|++++|++++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886554432211111124567889999999999999
Q ss_pred ecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccc
Q 004038 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 478 (777)
Q Consensus 399 ~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~ 478 (777)
.|+++|+++|+|||||+|++||.|+|.+.+++++|++|+.++|++++++++|.||||++|.|++++.+|||||+.+.+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred cccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeC
Q 004038 479 LERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 558 (777)
Q Consensus 479 l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~ 558 (777)
+++++++.|+++++|+|++++|.+||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeeeeccc-eeeeEeeeccCCCCceEEEEEEEeec---cCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCc
Q 004038 559 PQVNYRESISKVS-EVKYVHKKQSGGQGQFADITVRFEPM---EAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGV 634 (777)
Q Consensus 559 p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~~~P~---~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gp 634 (777)
|+|+|||||.+.+ +..++|++|+||++||++|+++++|+ ++|+|+.|.+++.|+.+|++|+++|++||+||+++||
T Consensus 486 p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~ 565 (704)
T 2rdo_7 486 PQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGP 565 (704)
T ss_pred CEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998 89999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeee
Q 004038 635 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 714 (777)
Q Consensus 635 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~ 714 (777)
||||||+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|+++
T Consensus 566 l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~ 645 (704)
T 2rdo_7 566 LAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQ 645 (704)
T ss_pred cCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHH
Q 004038 715 GDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773 (777)
Q Consensus 715 ~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 773 (777)
+..+ +.+.|+|.+|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 646 ~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 646 ESEV-TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred eecC-CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHhc
Confidence 9987 689999999999999999999999999999999999999999999999998864
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.4e-136 Score=1208.56 Aligned_cols=686 Identities=55% Similarity=0.945 Sum_probs=629.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
++.++++||+|+||+|||||||+|+|++.++.+...+.++.|.+++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 84 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcC
Confidence 35678999999999999999999999998898888888888899999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEe
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (777)
|.+|..++.++++.+|++|+|+|++++++.++..+|+.+...++|+++|+||+|+..+++.++++++++.++.++.+.++
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEE
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeecccceEEEec-CcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 245 PVGAEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 245 pi~~~~~~~g~id~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
|++.+..|.|++|++.++.++|+ + .|+.+...++|+++.+.++.+|++++|.+++.||++|++||+|..++.++++.
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccC--CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999997 3 37778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCC
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~ 403 (777)
.+++.+..+.++||+|+||++|.|++.||++|++++|+|.+++..++....++.....+.|++++|++++|||++.|+++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999988654322111011223456788999999999999999999
Q ss_pred ceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCC
Q 004038 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 483 (777)
Q Consensus 404 G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~ 483 (777)
|+++|+|||||+|++||.|+|..++++++|++|+.++|+++++++++.||||++|.|++++++|||||+.+.+..+++++
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeE
Q 004038 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 563 (777)
Q Consensus 484 ~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 563 (777)
+|.|+++++|+|++++|.+||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeE
Q 004038 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 643 (777)
Q Consensus 564 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 643 (777)
||||.++++..++|+||+||++|||+|+++++|+++|+|+.|+++++|+.+|++|+++|++||+||+++||||||||+||
T Consensus 483 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v 562 (693)
T 2xex_A 483 RETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDV 562 (693)
T ss_dssp EEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSE
T ss_pred EEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEE
Q 004038 644 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 723 (777)
Q Consensus 644 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~ 723 (777)
+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|++++..+ +.+.
T Consensus 563 ~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~ 641 (693)
T 2xex_A 563 KAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRG-NAQV 641 (693)
T ss_dssp EEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEE
T ss_pred EEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccC-CeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHH
Q 004038 724 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 773 (777)
Q Consensus 724 i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 773 (777)
|+|.+|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++++
T Consensus 642 i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 691 (693)
T 2xex_A 642 VNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691 (693)
T ss_dssp EEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred EEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=5.3e-135 Score=1201.77 Aligned_cols=681 Identities=58% Similarity=0.966 Sum_probs=579.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.++++||+|+||+|||||||+++|++.+|.....+.++.|++++|+++.|+++|+|+......+.|+++.++|||||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 46789999999999999999999999999888888888899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEecc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
+|..++.++++.+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..+++.++++++++.++.++.+.++|+
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi 168 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPI 168 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 004038 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (777)
Q Consensus 247 ~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~ 326 (777)
+.+..|.|++|++.+++++|+.. .|..+...++|+++.+.++++|++|+|.+++.||++|++||+|+.++.++++..++
T Consensus 169 ~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 169 GREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247 (691)
T ss_dssp SCGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cCCCcccchhhhhcceeeEeccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 99999999999999999999711 36667788999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceE
Q 004038 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (777)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l 406 (777)
+.+..+.++||+|+||++|.|+++||++|++++|+|.+++..++... +.....+.|++++|++++|||++.|+++|++
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~ 325 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVGRL 325 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTEEE
T ss_pred HHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC--CccccccccCCCCCcEEEEEEEEEcCCCCcE
Confidence 99999999999999999999999999999999999998654332211 1123456788999999999999999999999
Q ss_pred EEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCc-cccccCCCC
Q 004038 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMDFP 485 (777)
Q Consensus 407 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~-~~l~~~~~~ 485 (777)
+|+|||||+|++||.|+|.+++++++|++|+.++|++++++++|.||||++|.|++++.+|||||+.+.+ ..+++++++
T Consensus 326 ~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~~ 405 (691)
T 1dar_A 326 TFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVP 405 (691)
T ss_dssp EEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC-----
T ss_pred EEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888 889999999
Q ss_pred CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEe
Q 004038 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 565 (777)
Q Consensus 486 ~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrE 565 (777)
.|+++++|+|++++|.+||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++.+++|+|+|||
T Consensus 406 ~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrE 485 (691)
T 1dar_A 406 EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485 (691)
T ss_dssp ---------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCEE
T ss_pred CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEE
Q 004038 566 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 645 (777)
Q Consensus 566 ti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v 645 (777)
||.+.++..++|++|+||++|||+|+++++|+++|+|+.|+++++|+.+|++|+++|++||+||+++||||||||+||+|
T Consensus 486 ti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v 565 (691)
T 1dar_A 486 TITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKV 565 (691)
T ss_dssp ECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEE
T ss_pred eeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEE
Q 004038 646 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVD 725 (777)
Q Consensus 646 ~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~ 725 (777)
+|+|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|++++..+ +.+.|+
T Consensus 566 ~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~i~ 644 (691)
T 1dar_A 566 TLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRG-NAQVIR 644 (691)
T ss_dssp EEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEET-TEEEEE
T ss_pred EEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecC-CeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 689999
Q ss_pred EEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHH
Q 004038 726 ALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 771 (777)
Q Consensus 726 a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~ 771 (777)
|.+|++|||||+++||++|+|+|+|+|+|+||+++|++++++|+++
T Consensus 645 a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 645 AFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999864
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=4.8e-126 Score=1121.71 Aligned_cols=657 Identities=34% Similarity=0.606 Sum_probs=631.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
..++.++|+|+||+|||||||+++|+...+.....|.+..|.+.+|+.+.|+++|+|+......+.+.+..++|||||||
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34678999999999999999999999888877777888888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEec
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .+..++++++++.++ ++.+.++|
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~P 162 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLP 162 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEE
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEee
Confidence 9999999999999999999999999999999999999999999999999999999 888999999999999 88899999
Q ss_pred cCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHH
Q 004038 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (777)
Q Consensus 246 i~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l 325 (777)
++.+..|.|++|++.++.|+|++ |. +...++|+++.+..+.+|++++|.+++.||+++++|++|+.++.++++..+
T Consensus 163 i~~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~ 238 (665)
T 2dy1_A 163 LYEGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAF 238 (665)
T ss_dssp EEETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ecCCCcccchhhhhhhheeecCC---Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999986 43 677889999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCce
Q 004038 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (777)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~ 405 (777)
++.+..+.++|++++||++|.|+++||++|++++|+|.++ ++++|++++|||++.|++.|+
T Consensus 239 ~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~ 299 (665)
T 2dy1_A 239 HEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQ 299 (665)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEE
T ss_pred HHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------------------CCCCCeEEEEEEEEEcCCCCe
Confidence 9999999999999999999999999999999999999652 037899999999999999999
Q ss_pred EEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCc--cccccCC
Q 004038 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMD 483 (777)
Q Consensus 406 l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~--~~l~~~~ 483 (777)
++++|||||+|++||.|++.+ +.++|++|+.++|++++++++|.||||++|.|++++.+|||||+.+.+ ..+++++
T Consensus 300 ~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 300 VAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp EEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred EEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 999999999999999999887 678999999999999999999999999999999999999999998877 7899999
Q ss_pred CCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeE
Q 004038 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNY 563 (777)
Q Consensus 484 ~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 563 (777)
++.|+++++|+|++++|.+||.++|++|++|||+|++..|+||||++|+|||||||||+++||+ +||+++.+++|+|+|
T Consensus 378 ~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~y 456 (665)
T 2dy1_A 378 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPY 456 (665)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCC
T ss_pred CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeE
Q 004038 564 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 643 (777)
Q Consensus 564 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 643 (777)
||||.++++..++|++|+||++|||+|+++++|++ |+.|.+++.++.+|++|+++|++||+||+++||||||||+||
T Consensus 457 rEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~---g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v 533 (665)
T 2dy1_A 457 RETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS---EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGF 533 (665)
T ss_dssp EEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS---SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSE
T ss_pred EEeeccceeeeeecccccCCCcceEEEEEEEEECC---CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeE
Confidence 99999999999999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEE
Q 004038 644 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 723 (777)
Q Consensus 644 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~ 723 (777)
+|+|+||++|.+||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|++++..+ +.+.
T Consensus 534 ~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~ 612 (665)
T 2dy1_A 534 KAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSV 612 (665)
T ss_dssp EEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEE
T ss_pred EEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred EEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHHh
Q 004038 724 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 774 (777)
Q Consensus 724 i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~ 774 (777)
|+|.+|++|||||+++||++|+|+|+|+|+|+||+++|++++++|++++++
T Consensus 613 i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~~ 663 (665)
T 2dy1_A 613 VHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQ 663 (665)
T ss_dssp EEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=4.3e-129 Score=1142.67 Aligned_cols=617 Identities=26% Similarity=0.436 Sum_probs=578.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
++|||+|+||+|||||||+++|++.+|.+.+.|.++.|++++|+++.|++|||||+++..++.|+++.|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (777)
..++.++++.+|+||+||||.+|++.||+.+|+++.++++|+++||||||+.++++.+++++|++.|+..+...+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~----- 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----- 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC-----
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999988654221
Q ss_pred CCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004038 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (777)
Q Consensus 249 ~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~ 328 (777)
.+++...... ..+. ...+.|.+++.||+++++|++++.++..++...++..
T Consensus 156 ------~~~~~~~~~~-------------~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 156 ------KVELYPNVCV-------------TNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp ------CCCSCGGGCC-------------CCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred ------eeEeeccccc-------------cccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 1222111100 0011 1245688889999999999999999999999999999
Q ss_pred hhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEE
Q 004038 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (777)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~ 408 (777)
+..+.++||+|+||++|.|+++|||+|++++|+|.+. ++.|++++|||+.+|++.|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc--------------------hhhhhcceeeeeeeeccCceEEE
Confidence 9999999999999999999999999999999999762 36899999999999999999999
Q ss_pred EEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccccCCCCCce
Q 004038 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 488 (777)
Q Consensus 409 ~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv 488 (777)
+|||||+|++||.|++...+ ++++.+++.++|.++++++++.||||+++.| ..+.+|+|+++...+..+.++.+|+|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCcc
Confidence 99999999999999887654 5799999999999999999999999999988 568889999998888888899999999
Q ss_pred eEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEeeee
Q 004038 489 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESIS 568 (777)
Q Consensus 489 v~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~ 568 (777)
++++|+|.+++|.+||.++|++|++|||+++++.+++|||++|+|||||||||+++||+++||+++.+++|+|+|||||.
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEe
Q 004038 569 KVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALV 648 (777)
Q Consensus 569 ~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~ 648 (777)
+.+ ++++++|+++++||++|+++++|+++++|+.|+++++++.+|++|+++|++||+|++++| |+||||+||+|+|.
T Consensus 425 ~~~--~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~ 501 (638)
T 3j25_A 425 KNA--EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFK 501 (638)
T ss_dssp SCC--EECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCC
T ss_pred ccc--eEEEEEecCCCCceEEEEEEEecccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEE
Confidence 876 467889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEe
Q 004038 649 DGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALV 728 (777)
Q Consensus 649 ~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~ 728 (777)
||++|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|++++..+ +.++|+|.+
T Consensus 502 dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~v 580 (638)
T 3j25_A 502 YGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN-NEVILSGEI 580 (638)
T ss_dssp CCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT-TEEEEECCC
T ss_pred ECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC-CeEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 789999999
Q ss_pred chhhhhchHHHhhccCCceEEEEEEeCccccCCchHH
Q 004038 729 PLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQ 765 (777)
Q Consensus 729 P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 765 (777)
|++|||||+++||++|+|+|+|+|+|+||++||+|+.
T Consensus 581 P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 581 PARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp SSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCS
T ss_pred CHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCcc
Confidence 9999999999999999999999999999999998854
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=2.8e-117 Score=1069.86 Aligned_cols=668 Identities=27% Similarity=0.394 Sum_probs=561.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-------------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------- 153 (777)
.+++|||+|+||+|||||||+++|++.+|.+...+ ..+++++|+.+.|+++|+|+..+...+.|+
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 35689999999999999999999999888776544 345688999999999999999999988886
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC---------
Q 004038 154 ---KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG--------- 221 (777)
Q Consensus 154 ---~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~--------- 221 (777)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|+..+|.++...++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred --cchHhHHHHHHHHhC-----------CCceeEEeccCCC----------------CCceeeeecccceEE---EecCc
Q 004038 222 --ANFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGE 269 (777)
Q Consensus 222 --~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~g~id~~~~~~~---~~~~~ 269 (777)
.++.+++++++..++ ..+.+.++|++.. .+|.+.++.+.++.| +|+..
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 335677788877762 4454556676544 344444455555555 56542
Q ss_pred CCCceeeeccccH-------hHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHhhhhcCcceeE
Q 004038 270 ELGAKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPV 337 (777)
Q Consensus 270 ~~g~~~~~~~~~~-------~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv 337 (777)
|..+...++|+ .+.+...+.+.+|+|.+++.||++|++||++ ..++.++++ +.+++.+ .+.|+|+
T Consensus 254 --~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv 330 (842)
T 1n0u_A 254 --TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA 330 (842)
T ss_dssp --TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH
T ss_pred --CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch
Confidence 44555554444 4556678889999999999999999999986 688988888 7888888 6788898
Q ss_pred eeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEeecCCCce-EEEEEE
Q 004038 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRV 411 (777)
Q Consensus 338 ~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~-l~~~RV 411 (777)
+++|||+|++++|+|.+++..++. +.+++.....+.|++++|++++|||+..+++.|+ ++|+||
T Consensus 331 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 331 ----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp ----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred ----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 699999999999999865322110 0011112345678999999999999999999995 999999
Q ss_pred EeeeecCCCeE------EeCCCCc---eeecceeEEeccCceeecceeecCCEEEEcCCCccccc-ceeccCCCcccccc
Q 004038 412 YAGTLSAGSYV------LNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLER 481 (777)
Q Consensus 412 ~sG~l~~g~~v------~~~~~~~---~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G-dtL~~~~~~~~l~~ 481 (777)
|||+|++||.| ||.++++ .+||++|+.++|+++++|++|.|||||+|.|++++.+| +|||+.+.+..+++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~ 480 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCcccccc
Confidence 99999999999 4445555 68999999999999999999999999999999998654 69999888888999
Q ss_pred CCCC-CceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhc-CcEEEEeCC
Q 004038 482 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAP 559 (777)
Q Consensus 482 ~~~~-~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p 559 (777)
+.+| .|+++++|+|+++.|.+||.+||++|++|||+|+++.+ ||||++|+|||||||||+++||+++| |+++.+++|
T Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P 559 (842)
T 1n0u_A 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 559 (842)
T ss_dssp CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECC
T ss_pred CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCc
Confidence 9988 69999999999999999999999999999999999998 89999999999999999999999999 999999999
Q ss_pred eeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccC----------------------------------------
Q 004038 560 QVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA---------------------------------------- 599 (777)
Q Consensus 560 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~---------------------------------------- 599 (777)
+|+|||||++.++..+..+. .+.|.+++++++|+++
T Consensus 560 ~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~ 635 (842)
T 1n0u_A 560 VVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWC 635 (842)
T ss_dssp CCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEE
T ss_pred EEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceee
Confidence 99999999998876443222 2334589999999863
Q ss_pred -----CCCcEEEecccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCC--HHHHHHHHHHHHHH
Q 004038 600 -----GSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSS--VLAFQLAARGAFRE 672 (777)
Q Consensus 600 -----g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~ 672 (777)
+.+++|+|.++|+.++++|+++|++||+||+++||||||||+||+|+|+||++|.++++ .++|++|+++||++
T Consensus 636 ~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~ 715 (842)
T 1n0u_A 636 FGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYA 715 (842)
T ss_dssp ESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHH
T ss_pred eccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHH
Confidence 14799999999999999999999999999999999999999999999999999964444 66799999999999
Q ss_pred HHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCC-CeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004038 673 GMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYI 751 (777)
Q Consensus 673 a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g-~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 751 (777)
|+++|+|+||||||+|+|+||++|+|+||+||++|||+|+++++.+| +.++|+|.+|++|||||+++||++|+|+|+|+
T Consensus 716 a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~ 795 (842)
T 1n0u_A 716 GFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQ 795 (842)
T ss_dssp HHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEE
T ss_pred HHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEE
Confidence 99999999999999999999999999999999999999999998664 46999999999999999999999999999999
Q ss_pred EEeCccccCCch------HHHHHHHHHHh
Q 004038 752 MQLAKFDVVPQH------IQNQLAAKEQE 774 (777)
Q Consensus 752 ~~f~~y~~v~~~------~~~~~~~~~~~ 774 (777)
|+|+||++||++ .+.+++.+.|+
T Consensus 796 ~~F~~y~~vp~~~~~~~~~a~~~~~~~R~ 824 (842)
T 1n0u_A 796 MVFDHWSTLGSDPLDPTSKAGEIVLAARK 824 (842)
T ss_dssp EEEEEEEECCSCTTCTTSHHHHHHHHHHH
T ss_pred EEeccceeCCCCccchhhHHHHHHHHHHH
Confidence 999999999998 78888888665
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=7.4e-92 Score=810.53 Aligned_cols=483 Identities=27% Similarity=0.421 Sum_probs=398.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCC----ccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~----~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
.++|||+|+||+|||||||+++||+.+|.+.+.|.++.|+ +++|+++.|++|||||.++..++.|+++.|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 5689999999999999999999999999999999998774 899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.||..|+.++|+.+|+||+||||.+|+++||+.+|+++.++++|+++||||||+.++++.+++++|++.|+.++.|++
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+||+.+..|.|++|++.++++.|.....|.......+.....+...++.....+... .+.++++ -.+...+.
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~----- 260 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR-MDLALLE--EAGTPFDE----- 260 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH-HHHHHHH--HHCCCCCH-----
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh-hHHHHHh--hccCchhH-----
Confidence 999999999999999999999998764443322222211111111111111111100 0011111 11222222
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeec---
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD--- 400 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~--- 400 (777)
+.++.+.++|||||||++|.|+++|||+|++++|+|.+.+...+. ..+.+.|+.++|||+..+
T Consensus 261 ---e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~-----------~~~~~~p~~a~vfKi~~~~~~ 326 (548)
T 3vqt_A 261 ---ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRV-----------VEPGEEAFTGVVFKIQANMDK 326 (548)
T ss_dssp ---HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSE-----------ECTTCSSCEEEEEEEECC---
T ss_pred ---HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccc-----------cCCCCcCceEEEEEEEccCCc
Confidence 234567899999999999999999999999999999875432211 123468999999999877
Q ss_pred CCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccc
Q 004038 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 480 (777)
Q Consensus 401 ~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~ 480 (777)
++.|+++|+|||||+|++||.|+|.+.++++||++++.++|.+++++++|.|||||+|.|++++.+|||||+.+.+..++
T Consensus 327 ~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~ 406 (548)
T 3vqt_A 327 AHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFV 406 (548)
T ss_dssp ----CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBC
T ss_pred CCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred cCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEE-----
Q 004038 481 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN----- 555 (777)
Q Consensus 481 ~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~----- 555 (777)
+++++.|+++++|+|+++.|.+||.++|++|+++|| +.+..+++|||++|+|||||||||+++||+++||+++.
T Consensus 407 ~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~ 485 (548)
T 3vqt_A 407 GIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVS 485 (548)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred CCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeecc
Confidence 999999999999999999999999999999999998 56777899999999999999999999999999999976
Q ss_pred EeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEE
Q 004038 556 VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 593 (777)
Q Consensus 556 ~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 593 (777)
++.|+|+|||||++.++++++|++|+|+++||+.|++.
T Consensus 486 ~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 486 THTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp CCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred ccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 57899999999999999999999999999999999874
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.2e-81 Score=727.06 Aligned_cols=464 Identities=28% Similarity=0.457 Sum_probs=393.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-----eEEEEEe
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----HRINIID 161 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----~~i~liD 161 (777)
.+++|||+|+||+|||||||+++|++.+|.+...+ .+++++|+++.|+++|+|+......+.|.. +.++|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 46789999999999999999999999888765432 246889999999999999999999988863 7999999
Q ss_pred CCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCcee
Q 004038 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (777)
Q Consensus 162 TPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 241 (777)
||||.||..++.++++.+|++|+|+|+++|++.|+.++|..+...++|+++|+||+|+..++.+++.+++.+.++..
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--- 156 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--- 156 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC---
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999887766666666544331
Q ss_pred EEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHH
Q 004038 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (777)
Q Consensus 242 ~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~ 321 (777)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecC
Q 004038 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (777)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~ 401 (777)
..+++++||++|.|+++|+++|++++|+|.. ++++|+.++||++++|+
T Consensus 157 ------------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~ 204 (600)
T 2ywe_A 157 ------------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDP 204 (600)
T ss_dssp ------------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEET
T ss_pred ------------cccEEEEEeecCCCchHHHHHHHHhcccccc--------------------cccCCcceeEEEEeecc
Confidence 0137899999999999999999999999864 24789999999999999
Q ss_pred CCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc-C---CCcccccceeccCCCc-
Q 004038 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (777)
Q Consensus 402 ~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~- 476 (777)
+.|.++++||++|++++||.|++.++++..+|.+++.+.+ +.++++++.||||+++. | ++++.+|||||+.+++
T Consensus 205 ~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~ 283 (600)
T 2ywe_A 205 YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283 (600)
T ss_dssp TTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCC
T ss_pred cceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCcc
Confidence 9999999999999999999999999999999999999886 47899999999999884 4 5579999999998877
Q ss_pred -cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhc
Q 004038 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (777)
Q Consensus 477 -~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~ 550 (777)
.+++++++++|+++++|+|.+..|.++|.++|++|.+|||+|+++ +||+|+++.| ||||||||+++||+++|
T Consensus 284 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~ 361 (600)
T 2ywe_A 284 KEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREY 361 (600)
T ss_dssp SSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999999999999998 4789877777 99999999999999999
Q ss_pred CcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHH
Q 004038 551 KVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECM 630 (777)
Q Consensus 551 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~ 630 (777)
|+++.+++|+|+|||||.+. |+ .+.|.|
T Consensus 362 ~~~v~~~~P~V~yreti~~~--------------g~---------------~~~~~~----------------------- 389 (600)
T 2ywe_A 362 GVKIITTAPNVIYRVKKKFT--------------DE---------------VIEVRN----------------------- 389 (600)
T ss_dssp CCCEEECCCEECEEEEETTC--------------SS---------------CEEESS-----------------------
T ss_pred CceEEEEeeeEEEEEEecCC--------------Cc---------------EEEEeC-----------------------
Confidence 99999999999999998741 11 111111
Q ss_pred HcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCce
Q 004038 631 SNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQ 710 (777)
Q Consensus 631 ~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~ 710 (777)
| +|+|+.| +. -+.||||||+++|.+|++|+|+||++|++|||+
T Consensus 390 ---p-~~~p~~~----------~~-----------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~ 432 (600)
T 2ywe_A 390 ---P-MDFPDNA----------GL-----------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGI 432 (600)
T ss_dssp ---G-GGSCSCG----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred ---h-hhCCCCC----------cc-----------------------cccccCCeEEEEEEecHHHHHHHHHHHHHcCcE
Confidence 2 6788766 11 148999999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004038 711 INSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 711 i~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
+.+++..++++..|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++
T Consensus 433 ~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 433 QKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp EEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred EeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 99999866578999999999999 899999999999999999999999998
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.1e-79 Score=712.30 Aligned_cols=460 Identities=28% Similarity=0.422 Sum_probs=385.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----CeEEEEEeC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDT 162 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDT 162 (777)
+++|||+|+||+|||||||+++|++.+|.+.... .+.+++|+++.|+++|+|+......+.|. ++.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE---MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc---ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 5789999999999999999999999888765431 25688999999999999999999999886 389999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeE
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 242 (777)
|||.||..++.++++.+|++|+|+|+++|++.|+...|..+...++|+++|+||+|+..++.+++.+++.+.++...
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999998877766666666544310
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~ 402 (777)
.+++++||++|.|+++|+++|.+++|+|.. ++++|+.++||++..+++
T Consensus 156 ------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~ 203 (599)
T 3cb4_D 156 ------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNY 203 (599)
T ss_dssp ------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETT
T ss_pred ------------ceEEEeecccCCCchhHHHHHhhcCCCccc--------------------cccCCceeeeeecccccc
Confidence 137889999999999999999999999864 247899999999999999
Q ss_pred CceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc-C---CCcccccceeccCCCc--
Q 004038 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP-- 476 (777)
Q Consensus 403 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~-- 476 (777)
.|+++++||++|+|++||.+.+.++++.++|.+++.+.+. .++++++.||||+++. | ++++.+||||++.+++
T Consensus 204 ~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~ 282 (599)
T 3cb4_D 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAE 282 (599)
T ss_dssp TEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCS
T ss_pred ccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccc
Confidence 9999999999999999999999999999999999998875 7899999999998884 5 4578999999998877
Q ss_pred cccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEe-----cChhhHHHHHHHHHhhcC
Q 004038 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 551 (777)
Q Consensus 477 ~~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~~ 551 (777)
.++++++.++|+++++++|.+..|.++|.++|++|.++||+|++. ++|+|+++.| ||||||||+++||+++||
T Consensus 283 ~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 283 KALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp SCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred cccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 678889999999999999999999999999999999999999998 5799987777 999999999999999999
Q ss_pred cEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEecccCCcCccccHHHHHHHHHHHHH
Q 004038 552 VEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMS 631 (777)
Q Consensus 552 v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~~~~~~~i~~~~~~~i~~g~~~a~~ 631 (777)
+++.+++|+|+|||||.+ |+++.|.| |
T Consensus 361 ~~~~~~~P~V~yreti~~------------------------------g~~~~~~~-------p---------------- 387 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTS------------------------------REVIYVDS-------P---------------- 387 (599)
T ss_dssp CCEEECCCEECEEEEESS------------------------------SCEEEESS-------G----------------
T ss_pred ceEEEEeeeEEEEEEecC------------------------------CceEEecC-------h----------------
Confidence 999999999999999874 12233332 1
Q ss_pred cCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCcee
Q 004038 632 NGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQI 711 (777)
Q Consensus 632 ~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i 711 (777)
.++|.. ++ -..||||||+++|.+|++|+|+||++|++|||++
T Consensus 388 ----~~~p~~-----------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~ 429 (599)
T 3cb4_D 388 ----SKLPAV-----------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQ 429 (599)
T ss_dssp ----GGSCCG-----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred ----hhCCCc-----------cc-----------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEE
Confidence 122321 00 1389999999999999999999999999999999
Q ss_pred eeeeccCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004038 712 NSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 760 (777)
Q Consensus 712 ~~~~~~~g~~~~i~a~~P~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 760 (777)
++++..+ +...|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++
T Consensus 430 ~~~~~~~-~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 430 TNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEECCT-TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred eCcEecC-CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 9999987 58999999999999 899999999999999999999999998
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.6e-75 Score=669.25 Aligned_cols=459 Identities=26% Similarity=0.401 Sum_probs=398.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeec----CCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~----g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
+++|||+|+||+|||||||+|+|++.+|.+...|.+.. +.+++|+++.|+++|+|+......+.|+++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 46799999999999999999999999999888777664 46789999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.+|..++.++++.+|++|+|+|+++|+..++..+|+.+...++|+++|+||+|+..++..+.++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+|++.+..|.|++|++.++++.|.... |......++++++.+. .+++.+.+. +++|+++..+..++...
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGK-HERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTS-SSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred cccccCCceeEEEEeecCEEEEecCCC-CCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 999999999999999999999998643 3233333444433211 222222222 45555432222222112
Q ss_pred HHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee--cC
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP 401 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--~~ 401 (777)
..++.++.+.++||||+||++|.||++||++|++++|+|.+...... ...+ .+.|++++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~----------~~~~-~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR----------LVKP-EEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS----------CBCT-TSSSCEEEEEEEEECCC-
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce----------eeCC-CcccceeEEEEEecccCc
Confidence 22667778999999999999999999999999999999987543111 1111 36899999999985 88
Q ss_pred -CCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCccccc
Q 004038 402 -FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 480 (777)
Q Consensus 402 -~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l~ 480 (777)
++|+++|+|||||+|++||.|++.+.+++++|++++.++|.+++++++|.||||+++.|++++++|||||+ +.+..++
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~-~~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEES-SCCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcC-CCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4556778
Q ss_pred cCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCCe
Q 004038 481 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ 560 (777)
Q Consensus 481 ~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~ 560 (777)
+++++.|+++++|+|+++.|.+||.+||++|++|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|+
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 8888899999999999999999999999999999996 888899999999999999999999999999999999999999
Q ss_pred eeEEeeeecc
Q 004038 561 VNYRESISKV 570 (777)
Q Consensus 561 V~yrEti~~~ 570 (777)
|+|+++|...
T Consensus 467 v~~~~~i~~~ 476 (528)
T 3tr5_A 467 VVTARWVICD 476 (528)
T ss_dssp CCEEEEEECS
T ss_pred eEEEEEecCC
Confidence 9999999763
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=6e-75 Score=667.02 Aligned_cols=459 Identities=26% Similarity=0.414 Sum_probs=371.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecC----CccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g----~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
++.+||+|+||+|||||||+++|++..+.+...|.+..+ .+++|+++.|+.+|+|+......+.|+++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457999999999999999999999888877766665543 5789999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
||.+|..++.++++.+|++|+|+|+.+|+..++..+++.+...++|+++|+||+|+..++..++++++++.|+....+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeee-ccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
+|++....|.|++|++.+..+.|.... |..+.. .++|. +.+. .+.|. .+++++++|+++.++..+++.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~-g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGK-GHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTC-CSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred cceecccCcceeeehhhhhHhhhcccC-CCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999996522 321111 22321 0000 12222 367788888876544444444
Q ss_pred HHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee---
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--- 399 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--- 399 (777)
..+++.+..+.++|||||||++|.||++||++|++++|+|.+++.. ...+.++ ++|++++|||+..
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~~-~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD----------TRTVEAS-EDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS----------SCEECTT-CCSCEEEEEEECSSCC
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc----------ccccCCC-CCCeEEEEEEEeeccC
Confidence 4456677789999999999999999999999999999999864320 0112222 6899999999976
Q ss_pred cCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcccccceeccCCCcccc
Q 004038 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (777)
Q Consensus 400 ~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~l 479 (777)
++++|+++|+||+||+|++||.|++.+.++.++|++++.++|.+++++++|.||||+++.|++++.+|||||+.+ +..+
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~ 387 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKF 387 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCB
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999877 5678
Q ss_pred ccCCCCCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChhhHHHHHHHHHhhcCcEEEEeCC
Q 004038 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAP 559 (777)
Q Consensus 480 ~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p 559 (777)
++++++.|+++++|+|+++.|.+||.+||++|++||| +++..+++|||++|+|||||||||+++||+++||+++.+++|
T Consensus 388 ~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 388 TGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp CCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 8889999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred eeeEEeeeecc
Q 004038 560 QVNYRESISKV 570 (777)
Q Consensus 560 ~V~yrEti~~~ 570 (777)
+|+|||||...
T Consensus 467 ~v~y~eti~~~ 477 (529)
T 2h5e_A 467 NVATARWVECA 477 (529)
T ss_dssp CCSEEEEEECS
T ss_pred ceeEEEEEcCC
Confidence 99999999754
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.8e-43 Score=370.60 Aligned_cols=198 Identities=20% Similarity=0.397 Sum_probs=162.4
Q ss_pred EEcCCCcccccceeccCCCccccccCCCCCceeEEEEEeCCC----cC-----HHHHHHHHHHHHhcCCeeEEEEcCCCC
Q 004038 457 ALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTK----AD-----IDKMANGLIKLAQEDPSFHFSRDEEIN 527 (777)
Q Consensus 457 ~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~Pvv~~aiep~~~----~d-----~~kL~~aL~~l~~eDPsl~v~~~~etg 527 (777)
+++||+++.+|||||+.+.+..++++++++|+++++|+|++. .| ..+|.++|.+|.++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 578999999999999998888999999999999999999987 65 789999999999999999999999999
Q ss_pred eEEEEecChhhHHHHHHHHHhhcCcEEEEeCCeeeEEeeeeccceeeeEeeeccCCCCceEEEEEEEeeccCCCCcEEEe
Q 004038 528 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKS 607 (777)
Q Consensus 528 e~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~~P~~~g~g~~f~~ 607 (777)
|++++|||||||||+++||+++ |+++.+++|+|+|||| . |
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~---------------G---------------------- 121 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D---------------G---------------------- 121 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T---------------T----------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C---------------C----------------------
Confidence 9999999999999999999999 9999999999999997 0 0
Q ss_pred cccCCcCccccHHHHHHHHHHHHHcCcccCCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeE
Q 004038 608 EIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMK 687 (777)
Q Consensus 608 ~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~ 687 (777)
+||||||+
T Consensus 122 ------------------------------------------------------------------------~llEPi~~ 129 (332)
T 3e3x_A 122 ------------------------------------------------------------------------QLMEPFET 129 (332)
T ss_dssp ------------------------------------------------------------------------EEEEEEEE
T ss_pred ------------------------------------------------------------------------EEECcEEE
Confidence 78999999
Q ss_pred EEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccC-CchHHH
Q 004038 688 VEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV-PQHIQN 766 (777)
Q Consensus 688 ~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v-~~~~~~ 766 (777)
++|.||++|+|.||++|++|||++.+++..+++.+.|+|.+|+++|+||.++||++|+|+|+|+++|+||+++ |++++.
T Consensus 130 v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~ 209 (332)
T 3e3x_A 130 VTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQ 209 (332)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSC
T ss_pred EEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccc
Confidence 9999999999999999999999999999876578899999999999999999999999999999999999999 887653
No 14
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.1e-37 Score=359.10 Aligned_cols=332 Identities=21% Similarity=0.259 Sum_probs=252.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe----------------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 152 (777)
+.++|+|+||+|||||||+++|+........ .+|+|.+.....+.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE------------------AGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc------------------CCceecccCeEEEeechhhhhcccccccccc
Confidence 4579999999999999999999743221111 123443333333322
Q ss_pred --cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHH
Q 004038 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 153 --~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~ 230 (777)
....++|||||||.+|..++.++++.+|++|+|+|+++|+++|+.+.|+.++..++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 12369999999999999999999999999999999999999999999999999999999999999986421000
Q ss_pred HHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004038 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (777)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~ 310 (777)
.+ .++++.........++.+.+.+.+.++++++.+
T Consensus 142 ----------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g 176 (594)
T 1g7s_A 142 ----------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG 176 (594)
T ss_dssp ----------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 011111111223445666777777777888777
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCe
Q 004038 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 390 (777)
Q Consensus 311 l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 390 (777)
++.+.. ..++ .....+|++++||++|.|+++|+++|..++|+|.+. ...+++++|+
T Consensus 177 l~~e~~------~~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---------------~l~~~~~~p~ 232 (594)
T 1g7s_A 177 FESERF------DRVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---------------QLKIEEDSPA 232 (594)
T ss_dssp CEEEEG------GGCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---------------GGEECTTSBC
T ss_pred cchHHH------HHHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchh---------------hhccccCCCc
Confidence 653210 0011 124568999999999999999999999998876531 1234568999
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCcee--ecceeEEec--------cCceeecceee--cCCEEEE
Q 004038 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE--RIGRLLEMH--------ANSREDVKVAL--AGDIIAL 458 (777)
Q Consensus 391 ~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~--ki~~i~~~~--------g~~~~~v~~a~--aGdIv~i 458 (777)
.++|++++.+++.|.++++||++|+|++||.|++.+.+..+ +|++|+.+. +.+..++++|. +|+++++
T Consensus 233 ~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~ 312 (594)
T 1g7s_A 233 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA 312 (594)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC
T ss_pred eeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE
Confidence 99999999999999999999999999999999998777644 999999873 56788999999 9999999
Q ss_pred cCCCcccccceeccCCCcc--------ccccCCCCCceeEEEEEeCCCcCHHHHHHHHHHH
Q 004038 459 AGLKDTITGETLCDADHPI--------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (777)
Q Consensus 459 ~gl~~~~~GdtL~~~~~~~--------~l~~~~~~~Pvv~~aiep~~~~d~~kL~~aL~~l 511 (777)
.||+++.+||||+...++. .+..+.+..+.+.+.|.+...+..+.|.++|+++
T Consensus 313 ~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 313 PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999999999999776541 1334445567788999999999999999999987
No 15
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.1e-34 Score=324.62 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=219.7
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee-------------eeecCCccccchhhhhhcceeEeeeEEEEEe
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------------EVHEGTATMDWMEQEQERGITITSAATTTYW 152 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g-------------~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~ 152 (777)
+.+..+||+++||+|+|||||+++|++.++.+.... .-...++.+|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345678999999999999999999999888764321 0011246789999999999999999999999
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCc-------hHHHHHHHHHHHcCCC-EEEEEEccCCCCcch
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~ 224 (777)
+++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+++++..+...++| +++|+||+|+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999986 7999999999999999 789999999975432
Q ss_pred Hh-HHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcC
Q 004038 225 FR-TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (777)
Q Consensus 225 ~~-~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 303 (777)
.+ ..+++.+
T Consensus 173 ~~~~~~~i~~---------------------------------------------------------------------- 182 (439)
T 3j2k_7 173 SNERYEECKE---------------------------------------------------------------------- 182 (439)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 11 1111110
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhhh-cCcceeEeeccccCCCChHHHHH-----------HHHHhCCCCCCCCCCCCC
Q 004038 304 DEAMESYLEGNEPDEETIKKLIRKGTI-AGSFVPVLCGSAFKNKGVQPLLD-----------AVVDYLPSPLDLPAMKGT 371 (777)
Q Consensus 304 d~l~e~~l~~~~~~~~~~~~~l~~~~~-~~~~~Pv~~~Sa~~~~Gi~~Lld-----------~i~~~lPsP~~~~~~~~~ 371 (777)
++...+..... ....+|++++||++|.|++++++ .+.+.+|.|..
T Consensus 183 ----------------~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~------- 239 (439)
T 3j2k_7 183 ----------------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNR------- 239 (439)
T ss_pred ----------------HHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCcc-------
Confidence 01111111000 01246899999999999998433 23355665533
Q ss_pred CCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceee
Q 004038 372 DPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVAL 451 (777)
Q Consensus 372 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~ 451 (777)
..++|+.+.|..++. +.|+++.|||.+|+|++||.|...+.+.+.+|++|+.. .+++++|.
T Consensus 240 -------------~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~ 300 (439)
T 3j2k_7 240 -------------SVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD----DTETDFVA 300 (439)
T ss_pred -------------CCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC----CeEcCEec
Confidence 237899999998875 56999999999999999999999999989999999753 47899999
Q ss_pred cCCEEE--EcCCC--cccccceeccCCCc
Q 004038 452 AGDIIA--LAGLK--DTITGETLCDADHP 476 (777)
Q Consensus 452 aGdIv~--i~gl~--~~~~GdtL~~~~~~ 476 (777)
|||+|+ +.|++ ++..||+|++++++
T Consensus 301 aG~~v~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 301 PGENLKIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred CCCcceEEEeccchhhcCCcEEecCCCCC
Confidence 999999 56665 58899999987654
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.1e-34 Score=324.44 Aligned_cols=271 Identities=26% Similarity=0.388 Sum_probs=217.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeee--eecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE--VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~--v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+..++|+++||+|||||||+++|+.... ..|. .......+|..+.|+++|+|+......+.+.+..++|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 5568999999999999999999975311 1110 0111235788899999999999998888888899999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc--hHhHHHHHHHHhCCCceeE
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVV 242 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~--~~~~~~~i~~~l~~~~~~~ 242 (777)
.+|...+..+++.+|++|+|+|+.++...|+++++..+...++| +++|+||+|+.... ++.+.++++
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~---------- 155 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR---------- 155 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999999 78999999987421 111111111
Q ss_pred EeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHH
Q 004038 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (777)
Q Consensus 243 ~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~ 322 (777)
T Consensus 156 -------------------------------------------------------------------------------- 155 (405)
T 2c78_A 156 -------------------------------------------------------------------------------- 155 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCcceeEeeccccCCCC------------------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccc
Q 004038 323 KLIRKGTIAGSFVPVLCGSAFKNKG------------------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384 (777)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~G------------------i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~ 384 (777)
..+.........+|++++||++|.| +.+|+++|.+++|.|..
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~-------------------- 215 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR-------------------- 215 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC--------------------
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC--------------------
Confidence 1111111111236889999999987 88999999999998854
Q ss_pred CCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC---ceeecceeEEeccCceeecceeecCCEEEEc--
Q 004038 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALA-- 459 (777)
Q Consensus 385 ~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~---~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~-- 459 (777)
+.++|+.+.|.+++.+++.|++++|||++|+|++||.|.+.+.+ ...+|++|... ..++++|.|||++++.
T Consensus 216 ~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~ 291 (405)
T 2c78_A 216 DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLR 291 (405)
T ss_dssp CCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEES
T ss_pred CCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEEC
Confidence 13689999999999999999999999999999999999987766 57889998653 2679999999999885
Q ss_pred CC--CcccccceeccCCC
Q 004038 460 GL--KDTITGETLCDADH 475 (777)
Q Consensus 460 gl--~~~~~GdtL~~~~~ 475 (777)
|+ +++.+||+|++++.
T Consensus 292 g~~~~~i~~G~~l~~~~~ 309 (405)
T 2c78_A 292 GVSREEVERGQVLAKPGS 309 (405)
T ss_dssp SCCTTTCCTTCEEESTTS
T ss_pred CCcHhhcCceEEEEcCCC
Confidence 55 57899999998763
No 17
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=1.3e-34 Score=322.65 Aligned_cols=271 Identities=26% Similarity=0.346 Sum_probs=214.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeee-eecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~-v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
...||+++||+|||||||+++|+..... .|. ...+.+.+|+...|+++|+|+......+.+++..++|||||||.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH
Confidence 3579999999999999999999753211 110 111123578888899999999998888888889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEecc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
|...+..+++.+|++|+|+|+++|...|++++|..+...++| +++|+||+|+.... +.++.+.
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~-------------- 142 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVE-------------- 142 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHH--------------
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHH--------------
Confidence 999999999999999999999999999999999999999999 57999999987421 1111110
Q ss_pred CCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 004038 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (777)
Q Consensus 247 ~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~ 326 (777)
+++.+.+.
T Consensus 143 ------------------------------------------------------------------------~~~~~~l~ 150 (397)
T 1d2e_A 143 ------------------------------------------------------------------------LEIRELLT 150 (397)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01111111
Q ss_pred hhhhcCcceeEeeccccCCCC----------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004038 327 KGTIAGSFVPVLCGSAFKNKG----------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (777)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~G----------i~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 396 (777)
........+|++++||++|.| +.+|+++|.+++|.|.. +.++|+.+.|++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~--------------------~~~~p~~~~v~~ 210 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR--------------------DLEKPFLLPVES 210 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC--------------------CTTSCCEEECCE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC--------------------CCCCcEEEEEEE
Confidence 111111236899999999764 89999999999998854 136899999999
Q ss_pred EeecCCCceEEEEEEEeeeecCCCeEEeCCCC--ceeecceeEEeccCceeecceeecCCEEEEc--CC--Cccccccee
Q 004038 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETL 470 (777)
Q Consensus 397 ~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~GdtL 470 (777)
++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|...+ .++++|.|||++++. |+ +++.+||+|
T Consensus 211 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l 286 (397)
T 1d2e_A 211 VYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVM 286 (397)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred EEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEE
Confidence 99999999999999999999999999876654 678899986542 678999999999885 65 568999999
Q ss_pred ccCC
Q 004038 471 CDAD 474 (777)
Q Consensus 471 ~~~~ 474 (777)
++++
T Consensus 287 ~~~~ 290 (397)
T 1d2e_A 287 AKPG 290 (397)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 9865
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=3.1e-34 Score=323.37 Aligned_cols=274 Identities=26% Similarity=0.308 Sum_probs=207.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceee--e-----eecC------CccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E-----VHEG------TATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g--~-----v~~g------~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
++.+||+++||+|||||||+++|++.+|.+.... . ...| ++.+|+.+.|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4678999999999999999999998766554211 0 0111 1468999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCC-EEEEEEccCCCCcch--
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-- 224 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~-- 224 (777)
+.++|||||||.+|..++..+++.+|++|+|+|+.+| +..|+++++..+...++| +++|+||+|+...++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 888999999999999985 789999999986431
Q ss_pred ---HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 225 ---FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 225 ---~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
+.+.++++
T Consensus 164 ~~~~~~~~~i~--------------------------------------------------------------------- 174 (435)
T 1jny_A 164 KRYKEIVDQVS--------------------------------------------------------------------- 174 (435)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 11111111
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Lld~i~~~lPsP~~~~~~~ 369 (777)
..+.........+|++.+||++|.|+. .|+++|.. +|.|...
T Consensus 175 ---------------------~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~---- 228 (435)
T 1jny_A 175 ---------------------KFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP---- 228 (435)
T ss_dssp ---------------------HHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG----
T ss_pred ---------------------HHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC----
Confidence 111111111113689999999999986 68888755 4555431
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecce
Q 004038 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (777)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (777)
.+.|+.+.|..++..++.|++++|||++|+|++||.|++.+.+...+|++|... ..++++
T Consensus 229 ----------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~ 288 (435)
T 1jny_A 229 ----------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDK 288 (435)
T ss_dssp ----------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESE
T ss_pred ----------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeE
Confidence 256788888888888999999999999999999999999998999999999653 378999
Q ss_pred eecCCEEEEc--C--CCcccccceeccCCCc
Q 004038 450 ALAGDIIALA--G--LKDTITGETLCDADHP 476 (777)
Q Consensus 450 a~aGdIv~i~--g--l~~~~~GdtL~~~~~~ 476 (777)
|.|||+|++. | .+++.+||+|++++++
T Consensus 289 a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 289 AEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp ECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 9999999983 4 4578999999987544
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.8e-34 Score=329.51 Aligned_cols=276 Identities=22% Similarity=0.266 Sum_probs=185.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCccee-------eeee------cCCccccchhhhhhcceeEeeeEEEEEe
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------GEVH------EGTATMDWMEQEQERGITITSAATTTYW 152 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~-------g~v~------~g~~~~d~~~~e~~~g~Ti~~~~~~~~~ 152 (777)
..+..+||+|+||+|||||||+++|++.++.+... .... ...+++|..+.|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34677899999999999999999999877665422 0111 1246889999999999999999999999
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-------chHHHHHHHHHHHcCCC-EEEEEEccCCCCcc-
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGAN- 223 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~- 223 (777)
+++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+++++..+...++| +|+|+||+|+...+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 78899999997643
Q ss_pred --hHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 224 --FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 224 --~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
+..+.+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 2222222222220
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH--------------HHHHHHHHhCCCCCCCCC
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ--------------PLLDAVVDYLPSPLDLPA 367 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~--------------~Lld~i~~~lPsP~~~~~ 367 (777)
+.......-+|++++||++|.|+. .|++.|.+++| |..
T Consensus 348 ------------------------~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~--- 399 (592)
T 3mca_A 348 ------------------------KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEK--- 399 (592)
T ss_dssp ------------------------TTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSC---
T ss_pred ------------------------HhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccc---
Confidence 000011123689999999999998 79999999887 322
Q ss_pred CCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeec
Q 004038 368 MKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDV 447 (777)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v 447 (777)
+.+.|+.+.|..++.. +.|++..|||.+|+|++||.|.+.+.+...+|++|... ..++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~ 457 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPS 457 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCS
T ss_pred -----------------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccC
Confidence 1378999999999999 88999999999999999999999998888999999853 3679
Q ss_pred c-eeecCCEEEE--cCCC--cccccceeccCCCc
Q 004038 448 K-VALAGDIIAL--AGLK--DTITGETLCDADHP 476 (777)
Q Consensus 448 ~-~a~aGdIv~i--~gl~--~~~~GdtL~~~~~~ 476 (777)
+ +|.|||+|++ .|++ ++..||+||+++.+
T Consensus 458 ~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 458 STWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp CCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred cceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999985 5654 48899999987654
No 20
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=4.5e-33 Score=306.43 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=198.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
+||+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+|..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~ 75 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLK 75 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHH
T ss_pred CEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHH
Confidence 399999999999999999994 478999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEE-ccCCCCcc-hHhHHHHHHHHhCCCceeEEeccC
Q 004038 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVN-KMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 171 ~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviN-KiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
++..+++.+|++|+|+| .+|+..|+++++..+...++|. ++++| |+|+ ..+ .+++.+++++.++.
T Consensus 76 ~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~---------- 143 (370)
T 2elf_A 76 SLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG---------- 143 (370)
T ss_dssp HHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999 9999999999999999999999 89999 9999 533 12223333322211
Q ss_pred CCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004038 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (777)
Q Consensus 248 ~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~ 327 (777)
.
T Consensus 144 ------------------------------------------------------------------~------------- 144 (370)
T 2elf_A 144 ------------------------------------------------------------------T------------- 144 (370)
T ss_dssp ------------------------------------------------------------------S-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred hhhcCcceeEee--ccccC---CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCC
Q 004038 328 GTIAGSFVPVLC--GSAFK---NKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (777)
Q Consensus 328 ~~~~~~~~Pv~~--~Sa~~---~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~ 402 (777)
....+|+++ +||++ +.|+++|++.|.+++|+|.... . .....|+.++|..++..++
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~-----------~-----~~~~~p~r~~v~~vf~~~~ 205 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAEN-----------A-----ELNSLPARIFIDHAFNVTG 205 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHH-----------H-----HGGGSCCEEEEEEEECCC-
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCC-----------c-----ccccccccccceeEEEcCC
Confidence 012368999 99999 9999999999999998762100 0 0024567777888888889
Q ss_pred CceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc--C--CCcccccceecc
Q 004038 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--G--LKDTITGETLCD 472 (777)
Q Consensus 403 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~ 472 (777)
.|+++++||++|++++||.|++.+.+...+|++|... + +++++|.|||++++. | .+++.+||+|++
T Consensus 206 ~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~---~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 206 KGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH-D---VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp --CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET-T---EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC-C---CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999999999999999999999998999999999653 2 789999999999986 4 457899999997
No 21
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.5e-32 Score=308.36 Aligned_cols=281 Identities=21% Similarity=0.248 Sum_probs=206.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCccee------------ee-eecCCccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~------------g~-v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
+...+|+++|++|+|||||+++|++.++.+... |. -....+.+|....|+++|+|++.....+.+++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 557899999999999999999999887755421 10 01234678999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHh
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 226 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~ 226 (777)
..++|||||||.+|...+..+++.+|++|+|+|+.+| +..|+++++..+...+++ +|+|+||+|+...+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-
Confidence 9999999999999999999999999999999999998 678999999999999865 8899999998763311
Q ss_pred HHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHH
Q 004038 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (777)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l 306 (777)
..+++.+
T Consensus 190 ~~~~i~~------------------------------------------------------------------------- 196 (483)
T 3p26_A 190 RFEEIKS------------------------------------------------------------------------- 196 (483)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------------HHHHHHHhCCC--CCCCC
Q 004038 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------------LLDAVVDYLPS--PLDLP 366 (777)
Q Consensus 307 ~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------------Lld~i~~~lPs--P~~~~ 366 (777)
++...+.........+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 197 -------------~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~-- 261 (483)
T 3p26_A 197 -------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI-- 261 (483)
T ss_dssp -------------HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC--
T ss_pred -------------HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc--
Confidence 1111111111112347899999999999873 45555555554 322
Q ss_pred CCCCCCCCCcccccccccCCCCCeEEEEEEEeecC---CCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEec---
Q 004038 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH--- 440 (777)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~---~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~--- 440 (777)
+.+.|+.+.|..++..+ +.|+++.|||.+|+|++||.|...+.+...+|++|....
T Consensus 262 ------------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~ 323 (483)
T 3p26_A 262 ------------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323 (483)
T ss_dssp ------------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-
T ss_pred ------------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccc
Confidence 23789999999998876 479999999999999999999999999889999998763
Q ss_pred -cCceeecceeecCCEEEE----cCCCcccccceeccCCC
Q 004038 441 -ANSREDVKVALAGDIIAL----AGLKDTITGETLCDADH 475 (777)
Q Consensus 441 -g~~~~~v~~a~aGdIv~i----~gl~~~~~GdtL~~~~~ 475 (777)
|..+.++++|.|||+|++ .+.+++..||+|+++++
T Consensus 324 ~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 445688999999999998 34467999999998776
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.9e-32 Score=328.37 Aligned_cols=275 Identities=24% Similarity=0.339 Sum_probs=203.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeee-eecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~-v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
..+..++|+++||+|||||||+++|+.... ..|. .....+.+|..+.|+++|+|+......+.+++..++||||||
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 345678999999999999999999975321 1110 001123578888999999999999888888889999999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHHHHHHhCCCceeEE
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (777)
|.+|...+..+++.+|++|+|||+++|...|+++++..+...++| +|+|+||+|+.... +.++.+.
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~----------- 435 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVE----------- 435 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHH-----------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHH-----------
Confidence 999999999999999999999999999999999999999999999 68899999997521 1111110
Q ss_pred eccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHH
Q 004038 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (777)
Q Consensus 244 ~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~ 323 (777)
+++..
T Consensus 436 ---------------------------------------------------------------------------eEi~e 440 (1289)
T 3avx_A 436 ---------------------------------------------------------------------------MEVRE 440 (1289)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHHhhhhcCcceeEeeccccCC--------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEE
Q 004038 324 LIRKGTIAGSFVPVLCGSAFKN--------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (777)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~--------~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (777)
.+.........+|++++||++| .|+++|+++|.+++|.|.. +.++|+.+.|.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r--------------------~~d~Pfr~pId 500 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER--------------------AIDKPFLLPIE 500 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC--------------------GGGSCCEEECC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc--------------------ccccceeeecc
Confidence 1111111122468999999999 5799999999999998754 13689999999
Q ss_pred EEeecCCCceEEEEEEEeeeecCCCeEEeCCCC--ceeecceeEEeccCceeecceeecCCEEEEc--CC--Ccccccce
Q 004038 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGET 469 (777)
Q Consensus 396 K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~--~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~Gdt 469 (777)
.++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|... ..++++|.|||+|++. |+ +++.+||+
T Consensus 501 ~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 501 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccE
Confidence 999999999999999999999999999987766 57889998643 2678999999999873 65 56899999
Q ss_pred eccCCC
Q 004038 470 LCDADH 475 (777)
Q Consensus 470 L~~~~~ 475 (777)
|++++.
T Consensus 577 L~~~~~ 582 (1289)
T 3avx_A 577 LAKPGT 582 (1289)
T ss_dssp EESTTS
T ss_pred EecCCC
Confidence 998764
No 23
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1e-31 Score=300.81 Aligned_cols=258 Identities=23% Similarity=0.350 Sum_probs=199.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-------------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------- 153 (777)
.+..+||+++||+|||||||+++|+ | ...|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH---T------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh---C------------CccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 3567899999999999999999995 2 23466778899999998877665541
Q ss_pred ----------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCC-CEEEEEEccCCCC
Q 004038 154 ----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLG 221 (777)
Q Consensus 154 ----------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~iiviNKiD~~~ 221 (777)
...++|||||||.+|..++.+++..+|++|+|+|+.+|. ..|+.+++..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 168999999999999999999999999999999999998 8999999998888887 6788999999876
Q ss_pred cch-HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHH
Q 004038 222 ANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (777)
Q Consensus 222 ~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (777)
.+. .+..+++++
T Consensus 152 ~~~~~~~~~~i~~------------------------------------------------------------------- 164 (410)
T 1kk1_A 152 KEKALENYRQIKE------------------------------------------------------------------- 164 (410)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 431 111111111
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccc
Q 004038 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380 (777)
Q Consensus 301 ~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~ 380 (777)
|+.+. ....+|++++||++|.|+++|+++|.+++|.|..
T Consensus 165 ---------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~---------------- 203 (410)
T 1kk1_A 165 ---------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKR---------------- 203 (410)
T ss_dssp ---------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC----------------
T ss_pred ---------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc----------------
Confidence 21110 0123689999999999999999999999998854
Q ss_pred ccccCCCCCeEEEEEEEee--------cCCCceEEEEEEEeeeecCCCeEEeCCCCc------------eeecceeEEec
Q 004038 381 ERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMH 440 (777)
Q Consensus 381 ~~~~~~~~p~~~~V~K~~~--------~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~ 440 (777)
+.+.|+.+.|.+.+. ++++|.+++|||++|+|++||.|.+.+.++ ..+|.+|..
T Consensus 204 ----~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-- 277 (410)
T 1kk1_A 204 ----DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-- 277 (410)
T ss_dssp ----CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--
T ss_pred ----ccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE--
Confidence 136788888887764 456799999999999999999999865432 345666653
Q ss_pred cCceeecceeecCCEEEEc-CC------CcccccceeccCCC
Q 004038 441 ANSREDVKVALAGDIIALA-GL------KDTITGETLCDADH 475 (777)
Q Consensus 441 g~~~~~v~~a~aGdIv~i~-gl------~~~~~GdtL~~~~~ 475 (777)
...++++|.|||++++. ++ .++.+|++|++++.
T Consensus 278 --~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 278 --GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp --TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred --CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCC
Confidence 24789999999988884 22 34678999998654
No 24
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.3e-32 Score=312.32 Aligned_cols=277 Identities=22% Similarity=0.304 Sum_probs=185.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCccee------------eee-ecCCccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~------------g~v-~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
+..+||+++||+|||||||+++|++.+|..... |.. ...++.+|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 557899999999999999999999888765321 110 1124678999999999999999998999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCc-------hHHHHHHHHHHHcCCC-EEEEEEccCCCCcchH-
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~- 225 (777)
..++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+++++..+...++| +++|+||+|+...++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999973 7999999999999998 8999999999654321
Q ss_pred hHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHH
Q 004038 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (777)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~ 305 (777)
+.++.+.+
T Consensus 201 ~~~~~i~~------------------------------------------------------------------------ 208 (467)
T 1r5b_A 201 ERYKECVD------------------------------------------------------------------------ 208 (467)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhh-hhc-CcceeEeeccccCCCChHH--------------HHHHHHHhCCCCCCCCCCC
Q 004038 306 AMESYLEGNEPDEETIKKLIRKG-TIA-GSFVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDLPAMK 369 (777)
Q Consensus 306 l~e~~l~~~~~~~~~~~~~l~~~-~~~-~~~~Pv~~~Sa~~~~Gi~~--------------Lld~i~~~lPsP~~~~~~~ 369 (777)
++...++.. ... ..-+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 209 --------------e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~----- 268 (467)
T 1r5b_A 209 --------------KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLER----- 268 (467)
T ss_dssp --------------HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHH-----
T ss_pred --------------HHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcC-----
Confidence 011111110 000 1136899999999999875 45555 45665532
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecce
Q 004038 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (777)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~ 449 (777)
+.++|+.+.|..++.+ .|++++|||.+|+|++||.|...+.+...+|++|+.. ...++++
T Consensus 269 ---------------~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~ 328 (467)
T 1r5b_A 269 ---------------KVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISS 328 (467)
T ss_dssp ---------------HHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESE
T ss_pred ---------------CCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeE
Confidence 1368899999888764 6899999999999999999999888888899988753 2478999
Q ss_pred eecCCEEEE--cC-CCcccccceeccCCCc
Q 004038 450 ALAGDIIAL--AG-LKDTITGETLCDADHP 476 (777)
Q Consensus 450 a~aGdIv~i--~g-l~~~~~GdtL~~~~~~ 476 (777)
|.|||+|++ .| .+++..||+|++++++
T Consensus 329 a~aG~~v~i~l~g~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 329 SICGDQVRLRVRGDDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EETTCEEEEEEESCCTTCCTTCEEECSSSC
T ss_pred EcCCCEEEEEEeccHhhCCceEEEeCCCCC
Confidence 999999998 56 5679999999987643
No 25
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=301.24 Aligned_cols=274 Identities=22% Similarity=0.237 Sum_probs=208.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCccee--eee-----ecC--------CccccchhhhhhcceeEeeeEEEEEe
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--GEV-----HEG--------TATMDWMEQEQERGITITSAATTTYW 152 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~--g~v-----~~g--------~~~~d~~~~e~~~g~Ti~~~~~~~~~ 152 (777)
++.++|+++||+|||||||+++|++..+.+... ..+ ..| ...+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999877644221 000 112 23578889999999999999999999
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchH---hHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF---RTR 228 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~---~~~ 228 (777)
++..++|||||||.+|...+..+++.+|++|+|+|+.+|+..|+.+++..+...++| +++|+||+|+...+.+ .+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 7889999999764311 111
Q ss_pred HHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 004038 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (777)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e 308 (777)
+++++
T Consensus 182 ~~~~~--------------------------------------------------------------------------- 186 (434)
T 1zun_B 182 ADYLK--------------------------------------------------------------------------- 186 (434)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 004038 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 376 (777)
Q Consensus 309 ~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Lld~i~~~lPsP~~~~~~~~~~~~~~ 376 (777)
.+.........+|++.+||++|.|+++ |++. .+.+|.|..
T Consensus 187 ---------------~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~------------ 238 (434)
T 1zun_B 187 ---------------FAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASD------------ 238 (434)
T ss_dssp ---------------HHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTC------------
T ss_pred ---------------HHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCccc------------
Confidence 111100001236899999999999987 5554 455666643
Q ss_pred ccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEE
Q 004038 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (777)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv 456 (777)
+.+.|+.+.|..++...+.|+...|||.+|+|++||.|...+.++..+|++|...+ .++++|.|||++
T Consensus 239 --------~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v 306 (434)
T 1zun_B 239 --------RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAV 306 (434)
T ss_dssp --------CCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEE
T ss_pred --------CCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEE
Confidence 13678899888887666667788999999999999999999888889999998764 479999999999
Q ss_pred EEcCCC--cccccceeccCCCc
Q 004038 457 ALAGLK--DTITGETLCDADHP 476 (777)
Q Consensus 457 ~i~gl~--~~~~GdtL~~~~~~ 476 (777)
++...+ ++..||+|++++.+
T Consensus 307 ~~~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 307 TLTMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp EEEESSCCCCCTTCEEEETTSC
T ss_pred EEEeCCccccCCccEEECCCCC
Confidence 996543 47899999987653
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.98 E-value=2e-31 Score=301.91 Aligned_cols=273 Identities=26% Similarity=0.309 Sum_probs=214.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCccee---------eeeecC----CccccchhhhhhcceeEeeeEEEEEecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI---------GEVHEG----TATMDWMEQEQERGITITSAATTTYWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~---------g~v~~g----~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 154 (777)
+...+|+++||+|||||||+++|++.++.+... .+...| .+++|..+.|+++|+|++.....+.+++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 346899999999999999999999876554321 001111 2456888899999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCch-------HHHHHHHHHHHcCCC-EEEEEEccCCCCcch--
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-------QSETVWRQADKYGVP-RICFVNKMDRLGANF-- 224 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~-------~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~-- 224 (777)
+.++|||||||.+|...+..+++.+|++|+|+|+.+|..+ |+++++..+...++| +++|+||+|+...+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence 9999999999999999999999999999999999998766 999999999999998 788999999874321
Q ss_pred -HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcC
Q 004038 225 -FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (777)
Q Consensus 225 -~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 303 (777)
+.+.++++
T Consensus 165 ~~~i~~~~~----------------------------------------------------------------------- 173 (458)
T 1f60_A 165 FQEIVKETS----------------------------------------------------------------------- 173 (458)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 11111111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChH------------------------HHHHHHHHhC
Q 004038 304 DEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------------------PLLDAVVDYL 359 (777)
Q Consensus 304 d~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~------------------------~Lld~i~~~l 359 (777)
..+.........+|++.+||++|.|+. .|++++.. +
T Consensus 174 -------------------~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~ 233 (458)
T 1f60_A 174 -------------------NFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-I 233 (458)
T ss_dssp -------------------HHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-S
T ss_pred -------------------HHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-c
Confidence 111111001113578889999999875 47787654 5
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEe
Q 004038 360 PSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEM 439 (777)
Q Consensus 360 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~ 439 (777)
|.|.. ..+.|+.+.|..++..++.|+++.|||.+|+++.||.|...+.+...+|.+|...
T Consensus 234 ~~p~~--------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 293 (458)
T 1f60_A 234 EQPSR--------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH 293 (458)
T ss_dssp CCCCC--------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET
T ss_pred CCCcc--------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC
Confidence 54532 1368999999999999999999999999999999999999888888899999753
Q ss_pred ccCceeecceeecCCEEEE--cCC--CcccccceeccCCC
Q 004038 440 HANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 475 (777)
Q Consensus 440 ~g~~~~~v~~a~aGdIv~i--~gl--~~~~~GdtL~~~~~ 475 (777)
..++++|.|||++++ .|+ ++++.|++|+++++
T Consensus 294 ----~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 294 ----HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ----TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred ----CeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 267899999999988 465 56899999998764
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-31 Score=307.98 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=218.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCccee------------ee-eecCCccccchhhhhhcceeEeeeEEEEEec
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWN 153 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~------------g~-v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 153 (777)
.+...+|+++||+|+|||||+++|++..+.+... |. -....+.+|....|+.+|+|+......+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3557899999999999999999998766654321 10 0123467888899999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCC-------CchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF 225 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~ 225 (777)
+..++|||||||.+|...+..+++.+|++|+|||+++| +..|+++++..+...++| +|+|+||+|+...+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 99999999999999999999999999999999999987 578999999999999987 7889999998763211
Q ss_pred hHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHH
Q 004038 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (777)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~ 305 (777)
..+++.+
T Consensus 324 -~~~ei~~------------------------------------------------------------------------ 330 (611)
T 3izq_1 324 -RFEEIKS------------------------------------------------------------------------ 330 (611)
T ss_dssp -HHHHHHH------------------------------------------------------------------------
T ss_pred -HHHHHHH------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHH---------------HHHHHHHhCCCCCCCCCCCC
Q 004038 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP---------------LLDAVVDYLPSPLDLPAMKG 370 (777)
Q Consensus 306 l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~---------------Lld~i~~~lPsP~~~~~~~~ 370 (777)
++...+.........+|++.+||++|.|+.+ |++.+.. ++.+.....
T Consensus 331 --------------~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~-l~~~~p~~~--- 392 (611)
T 3izq_1 331 --------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLEN-AAFKISKEN--- 392 (611)
T ss_dssp --------------HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTT-SCCCCCCSS---
T ss_pred --------------HHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHH-HhhcccccC---
Confidence 1111111111112246899999999999974 4444433 321111000
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEeecC---CCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEec----cCc
Q 004038 371 TDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH----ANS 443 (777)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~---~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~----g~~ 443 (777)
+ ....+.|+++.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+.+.+|++|.... |..
T Consensus 393 -p----------~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~ 461 (611)
T 3izq_1 393 -E----------GINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 461 (611)
T ss_dssp -S----------CCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSS
T ss_pred -c----------ccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEccccccccc
Confidence 0 0124789999999998876 579999999999999999999999999889999998663 556
Q ss_pred eeecceeecCCEEEE--cC--CCcccccceeccCCC
Q 004038 444 REDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (777)
Q Consensus 444 ~~~v~~a~aGdIv~i--~g--l~~~~~GdtL~~~~~ 475 (777)
+.++++|.|||+|+| .| .+++..|++||+++.
T Consensus 462 ~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 462 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred ccccceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 789999999999998 34 467899999998776
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=1.6e-30 Score=290.75 Aligned_cols=257 Identities=22% Similarity=0.317 Sum_probs=188.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 153 (777)
+..+||+++||+|||||||+++|. | ...|....|+++|+|+........+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~---g------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT---G------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH---S------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh---C------------CccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 457899999999999999999995 2 22456678888999998776554331
Q ss_pred ---------CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCC-CEEEEEEccCCCCc
Q 004038 154 ---------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (777)
Q Consensus 154 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~iiviNKiD~~~~ 222 (777)
...++|||||||.+|...+.+++..+|++|+|+|+++|. ..|+.+++..+...++ |+++|+||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 168999999999999999999999999999999999998 8999999998888886 68899999999764
Q ss_pred ch-HhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHh
Q 004038 223 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (777)
Q Consensus 223 ~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (777)
+. ....+++++
T Consensus 151 ~~~~~~~~~i~~-------------------------------------------------------------------- 162 (408)
T 1s0u_A 151 KQAEENYEQIKE-------------------------------------------------------------------- 162 (408)
T ss_dssp TTTTTHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 31 112222221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 004038 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381 (777)
Q Consensus 302 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 381 (777)
++.+ . ....+|++.+||++|.|+++|+++|.+++|.|..
T Consensus 163 --------~l~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~----------------- 201 (408)
T 1s0u_A 163 --------FVKG--------------T--IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR----------------- 201 (408)
T ss_dssp --------HHTT--------------S--TTTTCCEEEC------CHHHHHHHHHHHSCCCCC-----------------
T ss_pred --------HHhh--------------c--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc-----------------
Confidence 1110 0 0123589999999999999999999999998743
Q ss_pred cccCCCCCeEEEEEEEeec--------CCCceEEEEEEEeeeecCCCeEEeCCCC------------ceeecceeEEecc
Q 004038 382 RAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG------------KKERIGRLLEMHA 441 (777)
Q Consensus 382 ~~~~~~~p~~~~V~K~~~~--------~~~G~l~~~RV~sG~l~~g~~v~~~~~~------------~~~ki~~i~~~~g 441 (777)
+.+.|+.+.|.+++.. +++|.++.|||.+|+|++||.|...+.+ ...+|++|+..
T Consensus 202 ---~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-- 276 (408)
T 1s0u_A 202 ---DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-- 276 (408)
T ss_dssp ---CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET--
T ss_pred ---cCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC--
Confidence 1367889999887643 3478899999999999999999876532 14678888753
Q ss_pred CceeecceeecCCEEEEcC-----C--CcccccceeccCCC
Q 004038 442 NSREDVKVALAGDIIALAG-----L--KDTITGETLCDADH 475 (777)
Q Consensus 442 ~~~~~v~~a~aGdIv~i~g-----l--~~~~~GdtL~~~~~ 475 (777)
..++++|.|||++++.. + +++..|++|++++.
T Consensus 277 --~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 277 --NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp --TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred --CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCC
Confidence 36799999999999942 2 24778999998754
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=4.6e-31 Score=300.47 Aligned_cols=262 Identities=23% Similarity=0.298 Sum_probs=195.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++||+|+|||||+++|+ +.. ....+|..+.|+++|+|++.....+.+++..++|||||||.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~---~~~--------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLT---EIA--------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH---TTC----------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH---CCC--------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 456899999999999999999996 211 123467788899999999999989999999999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc-hHhHHHHHHHHhCCCceeEEecc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
|...+..+++.+|++|+|+|+.+|+.+|+.+++..+...++|.++|+||+|+...+ ++.+.+++++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~------------- 152 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS------------- 152 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999999999999999999999987532 1111111111
Q ss_pred CCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 004038 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (777)
Q Consensus 247 ~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~ 326 (777)
.+.
T Consensus 153 -----------------------------------------------------------------------------~l~ 155 (482)
T 1wb1_A 153 -----------------------------------------------------------------------------ILQ 155 (482)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 111
Q ss_pred hhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceE
Q 004038 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (777)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l 406 (777)
.. ......|++.+||++|.|+++|+++|.+.+|.|.... ++++|+.+.|..++..++.|++
T Consensus 156 ~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~------------------~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 156 ST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR------------------NTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp HS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC------------------CSSSCCBCBCSCEECCSSCCCE
T ss_pred hh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc------------------cccccccccceeEEEecCCceE
Confidence 10 0001358999999999999999999999887552100 1356777778788888899999
Q ss_pred EEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCC--ccccccee-ccC
Q 004038 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL-CDA 473 (777)
Q Consensus 407 ~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL-~~~ 473 (777)
+.+||.+|++++||.|...+.+...+|+.|... ..++++|.|||.+++ .|++ ++..||+| +.+
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 999999999999999999888888899998753 367899999999887 4654 57899999 443
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=7.2e-30 Score=285.06 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=194.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-----cCeEEEEEeC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDT 162 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDT 162 (777)
++..+|+++||+|||||||+++|+...... ..+... .+.......+..++++.......+.+ ....++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE--TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE--EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc--cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 456799999999999999999996211110 111110 01111111222334433322111111 2378999999
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chHHHHHHHHHHHcCC-CEEEEEEccCCCCcc-hHhHHHHHHHHhCCCc
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN-FFRTRDMIVTNLGAKP 239 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~iiviNKiD~~~~~-~~~~~~~i~~~l~~~~ 239 (777)
|||.+|...+..+++.+|++|+|+|+.++. ..|+.+++..+...++ |+++|+||+|+...+ ..+..+++++.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l---- 158 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT---- 158 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH----
Confidence 999999999999999999999999999998 8999999999988886 789999999997643 112222222111
Q ss_pred eeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Q 004038 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (777)
Q Consensus 240 ~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 319 (777)
.+
T Consensus 159 ------------------------------------------------------------------------~~------ 160 (403)
T 3sjy_A 159 ------------------------------------------------------------------------KG------ 160 (403)
T ss_dssp ------------------------------------------------------------------------TT------
T ss_pred ------------------------------------------------------------------------Hh------
Confidence 10
Q ss_pred HHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEee
Q 004038 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (777)
Q Consensus 320 ~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 399 (777)
.....+|++++||++|.|+++|+++|.+++|.|.. +.+.|+.+.|.+.+.
T Consensus 161 ----------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------------------~~~~~~~~~v~~~~~ 210 (403)
T 3sjy_A 161 ----------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------------------DLSQKPVMLVIRSFD 210 (403)
T ss_dssp ----------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEC
T ss_pred ----------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------------------CCCCCcEEEEEEEEe
Confidence 01123589999999999999999999999988754 136789999998775
Q ss_pred --------cCCCceEEEEEEEeeeecCCCeEEeCCCCc------------eeecceeEEeccCceeecceeecCCEEEEc
Q 004038 400 --------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALAGDIIALA 459 (777)
Q Consensus 400 --------~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~ 459 (777)
++++|.+++|||++|++++||.|.+.+.++ ..+|++|... ..++++|.|||++++.
T Consensus 211 v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 211 VNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEE
Confidence 444899999999999999999999866543 4678888763 4789999999999983
Q ss_pred -----CC--CcccccceeccCCCc
Q 004038 460 -----GL--KDTITGETLCDADHP 476 (777)
Q Consensus 460 -----gl--~~~~~GdtL~~~~~~ 476 (777)
++ +++..|++|++++.+
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEETTCC
T ss_pred eccccccchhhhccccEEeCCCCC
Confidence 22 357789999987654
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=2.7e-32 Score=308.90 Aligned_cols=311 Identities=23% Similarity=0.282 Sum_probs=232.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.++|+++||+|||||||+++|+... + .....+|+|++.....+.+++..++|||||||.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~--------v----------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTK--------V----------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHH--------H----------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCC--------C----------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 456899999999999999999996321 0 1122378888888778888889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
|...+.++++.+|++|+|+|+.+|+.+|+.+++..+...++|+++++||+|+..++.+++.+++. .
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~----~---------- 129 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELS----Q---------- 129 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCC----C----------
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHH----H----------
Confidence 99999999999999999999999999999999999999999999999999998654321110000 0
Q ss_pred CCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004038 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (777)
Q Consensus 248 ~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~ 327 (777)
.+. ++ +
T Consensus 130 -----------------------~~~------~~-------------------------------------~-------- 135 (501)
T 1zo1_I 130 -----------------------YGI------LP-------------------------------------E-------- 135 (501)
T ss_dssp -----------------------CCC------CT-------------------------------------T--------
T ss_pred -----------------------hhh------hH-------------------------------------H--------
Confidence 000 00 0
Q ss_pred hhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEE
Q 004038 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (777)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~ 407 (777)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.++|++.+.+++.|.++
T Consensus 136 --~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~------------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 --EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE------------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp --CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST------------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred --HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc------------------cccccccccccceEEEEEeCCcEEEE
Confidence 0012368999999999999999999976421111 11235788999999999999999999
Q ss_pred EEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceeccCCCcc---------
Q 004038 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI--------- 477 (777)
Q Consensus 408 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~~--------- 477 (777)
++||++|+|++||.|.+.+ ...+|+.++..+ ..++++|.||+.+.+.|++++ ..||+++...++-
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~---g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGF--EYGRVRAMRNEL---GQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EEEEEESBCCTTCEEEEEB--SSCEEEEECCTT---TTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBT
T ss_pred EEEEEeeEEecCCEEEEcc--ceeEEEEEEecC---CCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999998754 233555554433 356899999999999999884 7899997432210
Q ss_pred ---------------ccccCC--C---CCceeEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCeEEEEecChh
Q 004038 478 ---------------LLERMD--F---PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGEL 537 (777)
Q Consensus 478 ---------------~l~~~~--~---~~Pvv~~aiep~~~~d~~kL~~aL~~l~~eDPsl~v~~~~etge~il~g~Gel 537 (777)
.++.+. + ..+.+.+.|.+...+..+.|.++|++|..+++.+.+- -.|.|.+
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~---------~~~vG~i 341 (501)
T 1zo1_I 271 QGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII---------GSGVGGI 341 (501)
T ss_dssp TCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC---------CSSSSSS
T ss_pred HHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE---------EeccCCC
Confidence 122211 1 2456778888888889999999999988777666553 3456766
Q ss_pred h
Q 004038 538 H 538 (777)
Q Consensus 538 H 538 (777)
+
T Consensus 342 ~ 342 (501)
T 1zo1_I 342 T 342 (501)
T ss_dssp H
T ss_pred C
Confidence 5
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=3e-31 Score=302.81 Aligned_cols=257 Identities=21% Similarity=0.270 Sum_probs=203.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~d 167 (777)
+.+.|+++||+|||||||+++|.... ......+|+|.+.....+.+ .+..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~------------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ------------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH------------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 45789999999999999999996221 11223457777777666666 567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHHHHHHHHhCCCceeEEeccC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
|...+.++++.+|++|+|+|+.+|..+|+.++|..+...++|+++|+||+|+..++.....+++.+. +.
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~---------- 133 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV---------- 133 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS----------
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh----------
Confidence 9999999999999999999999999999999999999999999999999999765432221111110 00
Q ss_pred CCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004038 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (777)
Q Consensus 248 ~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~ 327 (777)
+.+
T Consensus 134 --------------------------------------------------------------~~e--------------- 136 (537)
T 3izy_P 134 --------------------------------------------------------------VCE--------------- 136 (537)
T ss_dssp --------------------------------------------------------------CCC---------------
T ss_pred --------------------------------------------------------------hHH---------------
Confidence 000
Q ss_pred hhhcCcceeEeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEeecCCCceEE
Q 004038 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (777)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~~~~~G~l~ 407 (777)
..+..+|++++||++|.|+++|+++|...++.+.. ..+++.|+.+.|++.+.+++.|+++
T Consensus 137 --~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~------------------~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 137 --DYGGDVQAVHVSALTGENMMALAEATIALAEMLEL------------------KADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp --CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC------------------CCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred --hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc------------------cCCCCCCcceeEEEEEEeCCCceEE
Confidence 01123689999999999999999999998764422 1235789999999999999999999
Q ss_pred EEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEcCCCcc-cccceeccCCCc
Q 004038 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP 476 (777)
Q Consensus 408 ~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~ 476 (777)
.++|.+|+|++||.|... ....+|+.|+..+| .++++|.||++|+|.|++++ ..||+|+..+++
T Consensus 197 ~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 197 TAIIQRGTLRKGSILVAG--KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEECCSSEEEECCS--SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEecCEEEcCCEEEeC--CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 999999999999998543 23467777765544 67999999999999999985 889999977554
No 33
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=9.2e-19 Score=188.07 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=94.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~ 165 (777)
+...-.|+++|++|+|||||+|+|+ |.... ......++|.......+.+. +.+++||||||+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~---g~~~~--------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL---GTKVS--------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH---TSCCS--------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh---CCCcc--------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 3455689999999999999999997 21111 11223456666666667777 899999999999
Q ss_pred cchH----------HHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHHcCCCEEEEEEccCCC
Q 004038 166 VDFT----------LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 166 ~df~----------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~~~~p~iiviNKiD~~ 220 (777)
.++. ..+..+++.+|++|+|+|++++...++..+ ++.+...++|+++|+||+|+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 6643 667889999999999999999999999988 778888899999999999987
No 34
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.79 E-value=1e-19 Score=202.74 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=92.2
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe-EEEEEeC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDT 162 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDT 162 (777)
..+..+.++|+|+|++|+|||||+|+|+ +. +....+..+|+|++.....+.+.+. .++||||
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~---~~--------------~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT 90 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALV---GQ--------------NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSC---C---------------------------CCCCEEEEEETTTEEEEEEEC
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHH---cC--------------CCCccCCCCCeeeeeEEEEEEECCCCeEEEEEC
Confidence 3345678999999999999999999995 21 1112344578888888888888765 9999999
Q ss_pred CCCcchH-------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 163 PGHVDFT-------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 163 PG~~df~-------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
||+.+|. ..+..+++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+...+
T Consensus 91 pG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 91 PGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp SSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred cCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9998874 3367788899999999999 788999999999999999999999999997654
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=1.1e-18 Score=186.83 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=92.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d- 167 (777)
+..+|+|+|++|+|||||+|+|+..... ... ...++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~---ivs--------------~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA---PIS--------------PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---CCC--------------SSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee---eec--------------CCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4568999999999999999999722111 100 1123343333344567889999999999987
Q ss_pred -------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 168 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 -------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|++++....+..+++.+... ++|+++|+||+|+...
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 677788899999999999999999988888888888887 8999999999998754
No 36
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.6e-18 Score=176.36 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=91.5
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-ecCeEEEEEeC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDT 162 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDT 162 (777)
..+..+.++|+++|++|+|||||+|+|+.... .. ......|+|.......+. +++..++||||
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~-~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 86 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKR-LA---------------FASKTPGRTQHINYFSVGPAAEPVAHLVDL 86 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSS-SS---------------CTTCCCCSCCCEEEEEESCTTSCSEEEEEC
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCc-ce---------------eecCCCCcccceEEEEecCCCCCcEEEEcC
Confidence 34556778999999999999999999962110 00 111223455555555554 56789999999
Q ss_pred CCCcc----------hHHHHHHHHHh---cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 163 PGHVD----------FTLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 163 PG~~d----------f~~~~~~~l~~---aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
||+.+ |...+..+++. +|++++|+|+.++....+..+++.+...++|+++|+||+|+...
T Consensus 87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 99743 23444455555 78899999999999988888999998899999999999998753
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=3.7e-18 Score=163.75 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc--
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d-- 167 (777)
.++|+++|.+|+|||||+++|+..... ..+...++|.......+.+.+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSA-----------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCee-----------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 368999999999999999999722110 0112345566666666777888999999999987
Q ss_pred -----hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 -----f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+...+..+++.+|++++|+|+.++.......+.+.+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 4556677889999999999999988887777888888889999999999998643
No 38
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=1.1e-19 Score=190.19 Aligned_cols=203 Identities=13% Similarity=0.112 Sum_probs=126.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+..+|+|+|++|+|||||+|+|+......... ...++|.......+.|.+..++||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3456899999999999999999997322211100 012256666667788899999999999998
Q ss_pred chH-----------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc-----CCCEEEEEE-ccCCCCcchHhH--
Q 004038 167 DFT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVN-KMDRLGANFFRT-- 227 (777)
Q Consensus 167 df~-----------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iiviN-KiD~~~~~~~~~-- 227 (777)
++. ..+..+++.+|++|+|+|+.. +..++..+++.+.+. +.|.++|+| |+|+...++...
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 752 223346678999999999986 777888888887776 789999888 999986654432
Q ss_pred ------HHHHHHHhCCCceeE-Eecc------CCCCCceeeeecccceE-EEecCcCCCceeeeccccH--hHHHHHHHH
Q 004038 228 ------RDMIVTNLGAKPLVV-QLPV------GAEDNFKGVVDLVKMKA-IIWSGEELGAKFAYEDIPA--NLQKMAQEY 291 (777)
Q Consensus 228 ------~~~i~~~l~~~~~~~-~~pi------~~~~~~~g~id~~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~~~~~ 291 (777)
++.+.+.++....+. .+|+ +...-|..+++.+.+.. ++|..+ ...+.|. +.....+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG------LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH------HHHHC-------------
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH------HHHHHHHHHhhhhhHHHH
Confidence 222444444321100 0233 22334455555555443 444321 1223454 445566778
Q ss_pred HHHHHHHHHhcCHHHHHHHhc
Q 004038 292 RSQMIETIVELDDEAMESYLE 312 (777)
Q Consensus 292 ~~~l~e~~~~~dd~l~e~~l~ 312 (777)
++.+.|.+++.+++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999965
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=1.1e-18 Score=170.52 Aligned_cols=118 Identities=33% Similarity=0.421 Sum_probs=93.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++.++|+++|.+|+|||||+++|+.. ... .....++|.......+.+++..+++|||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS--KVT----------------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT--CSS----------------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--ccc----------------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 45689999999999999999999621 110 011123343444445667788999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
|......++..+|++|+|+|++++...++.+.+..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 87777778889999999999999988888888888888899999999999997654
No 40
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.6e-17 Score=165.04 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=84.7
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTP 163 (777)
..+..+.++|+++|++|+|||||+++|+... ... ......|.|.......+ +..+++||||
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~--------------~~~~~~~~t~~~~~~~~---~~~~~l~Dt~ 77 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRK--NLA--------------RTSSKPGKTQTLNFYII---NDELHFVDVP 77 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEEE---TTTEEEEECC
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCC--Ccc--------------ccCCCCCceeeEEEEEE---CCcEEEEECC
Confidence 3345677899999999999999999997211 000 01112334443333222 3479999999
Q ss_pred CC----------cchHHHHHHHHHhc---CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 164 GH----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 164 G~----------~df~~~~~~~l~~a---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
|+ ..|...+..+++.+ |++++|+|++++.......+++.+...++|+++|+||+|+...
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 94 34555566667776 9999999999998888888888888899999999999998754
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=2e-18 Score=184.75 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=87.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc-c
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-D 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~-d 167 (777)
+..+|+|+|++|||||||+|+|+ |....... ...++|.......+.+++.++++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~---g~~~~i~s--------------~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL---GQKISITS--------------RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH---TCSEEECC--------------CCSSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH---CCCccccC--------------CCCCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 44689999999999999999997 32111100 112334333344467788999999999998 3
Q ss_pred h--------HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f--------~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. ...+..+++.+|++++|+|+.+ +..++..+++.+...+.|+++|+||+|+..
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 2 2234556778999999999988 889999888888888999999999999875
No 42
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=4.7e-18 Score=177.62 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~ 170 (777)
++|+++|++|+|||||+|+|. |.....+. .+|+|+......+.+++..++||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~---g~~~~v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT---NANQRVGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TTSEEEEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 689999999999999999995 43322222 257788888888888999999999999988753
Q ss_pred ----------HHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 171 ----------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 171 ----------~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
....++ +.+|++|+|+|+++ ......++.++...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp -----CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred cccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 233344 68999999999998 45556677788888999999999999753
No 43
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=9.4e-18 Score=188.95 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
...++|+++|++|+|||||+|+|+ +.... ..+...|+|++.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~---~~~~~--------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAML---GEERV--------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH---TSTTE--------------EEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHh---CCCce--------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 467899999999999999999997 21111 1223467888888888888999999999999843
Q ss_pred ----------hHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 168 ----------FTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 ----------f~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 3322 346889999999999999999999999999888899999999999998753
No 44
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=1.6e-17 Score=160.97 Aligned_cols=114 Identities=20% Similarity=0.087 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|+. +... . ...|+......+.+++..+.+|||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV--GEVV------------T-------TIPTIGFNVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH--SSCC------------C-------CCCCSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC------------C-------cCCcCccceEEEEECCEEEEEEECCCChh
Confidence 4568999999999999999999962 1110 0 00122233345666789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 88888888999999999999998743322 223333322 58999999999998754
No 45
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.2e-17 Score=162.10 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=79.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|+. +... ... .|+......+.+++..+.+|||||+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~---~~~----------------~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM--NEVV---HTS----------------PTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT--TSCE---EEE----------------CCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC---cCc----------------CCCccceEEEEECCEEEEEEECCCCHh
Confidence 4567999999999999999999972 2111 100 022222344556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|++++.... ....+..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 8888888999999999999999874332 2233344433 5899999999999865
No 46
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=8.5e-18 Score=177.54 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=86.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+|+|+ |.....+ ..+|+|+......+.+.+..+++|||||+.+|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~---g~~~~v~---------------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT---GSRQRVG---------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TTCEEEE---------------ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCcccC---------------CCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4689999999999999999995 4322222 235777777778888888999999999998865
Q ss_pred H---------HHHH---HHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 L---------EVER---ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~---------~~~~---~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
. .+.+ ..+.+|++|+|+|+++ ......++.++.+.++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1 1222 2368999999999997 34556667778888999999999999753
No 47
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=1.9e-17 Score=164.95 Aligned_cols=119 Identities=22% Similarity=0.150 Sum_probs=84.4
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
.+....++|+++|++|+|||||+++|+ +...... ++ . .|+......+.+.+..++||||||
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~---~~~~~~~---------~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G 72 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVK---PAQSSSK---------HI---T----ATVGYNVETFEKGRVAFTVFDMGG 72 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHS---CCC-------------CC---C----CCSSEEEEEEEETTEEEEEEEECC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHh---cCCCccc---------cc---c----cccceeEEEEEeCCEEEEEEECCC
Confidence 345677899999999999999999995 2110000 00 0 122233344567889999999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc-----------CCCEEEEEEccCCCCc
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY-----------GVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~-----------~~p~iiviNKiD~~~~ 222 (777)
+.+|...+..+++.+|++|+|+|++++...... ..+..+... ++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999988888889999999999999987543332 344444433 8999999999998754
No 48
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=3e-17 Score=185.90 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC--
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG-- 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG-- 164 (777)
.....+|+++|++|+|||||+|+|+ +.... ..+...|+|.+.....+.+++..++||||||
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~---~~~~~--------------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAML---GEERV--------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHH---TSTTE--------------EECC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccccceeEEecCCCCCHHHHHHHHh---CCCcc--------------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 3567899999999999999999996 21111 1122357777777778888999999999999
Q ss_pred --------CcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 165 --------HVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 --------~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+..|... ...+++.+|++|+|+|+.+++..++..++.++...++|+++|+||+|+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4555444 446889999999999999999999999999999999999999999998753
No 49
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.73 E-value=4.3e-17 Score=161.58 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=84.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|+.. .... + ...|+......+.+.+..++||||||+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG--QFNE-----------D-------MIPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS--CCCC-----------S-------CCCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC--CCCC-----------c-------cCCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 45679999999999999999999722 1110 0 01122223334667889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 98888999999999999999987543322 233333332 58999999999998753
No 50
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=1.3e-16 Score=153.58 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=80.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~ 171 (777)
+|+++|++|+|||||+++|+...- . +. . -|+......+.+++..+++|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~------------~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--V------------TT---I----PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--S------------CC---C----CCSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--C------------cc---c----CcCceeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 799999999999999999973211 0 00 0 0222233445667889999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 172 ~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 8889999999999999998643322 223333332 37999999999998653
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=2.9e-17 Score=185.14 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=89.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc---
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d--- 167 (777)
++|+|+|++|+|||||+|+|+ +.... ..+...|+|.+.....+.|.+..+++|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~---~~~~~--------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLV---KKKKA--------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---C----------------------------CCSEEEEEETTEEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCc--------------eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc
Confidence 589999999999999999996 21111 1223468888888889999999999999999764
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 168 ------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
+...+..+++.+|++|+|+|+.++....+..+.+.++..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 34567888999999999999999999888888888888899999999999974
No 52
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=161.87 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|+.|+|||||+++|+.... .... ...|+......+.+++..+.+|||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNA---QSQN----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGG---CCSS----------------CCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC---CCCC----------------cCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 4567999999999999999999952110 0000 11233333445666788999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH------cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~------~~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 98888889999999999999998633222 223333332 4799999999999865
No 53
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=7.6e-17 Score=159.67 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
.+....++|+++|.+|+|||||+++|+... ... .....|.|..... ...+..+++|||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---------------~~~~~~~t~~~~~---~~~~~~~~i~Dt~G 77 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRK--IAF---------------VSKTPGKTRSINF---YLVNSKYYFVDLPG 77 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CSC---------------CCSSCCCCCCEEE---EEETTTEEEEECCC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCc--ccc---------------ccCCCCCccCeEE---EEECCcEEEEECCC
Confidence 344567899999999999999999997221 110 0111233333222 22345789999999
Q ss_pred C----------cchHHHHHHHHHhc---CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 165 H----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~----------~df~~~~~~~l~~a---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+ ..|......+++.+ |++++|+|+..+.......+++.+...++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 78 YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 4 33444455555555 9999999999998888888888998899999999999998754
No 54
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=1.8e-16 Score=157.81 Aligned_cols=114 Identities=20% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+ .+... .. . .|+......+.+++..+++|||||+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~--~~~~~------------~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK--LGEIV------------TT---I----PTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC--SSCCE------------EE---E----EETTEEEEEEEETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHH--hCCcc------------cc---C----CcCceeEEEEEECCEEEEEEECCCCHh
Confidence 556799999999999999999995 11111 00 0 122233345667889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 888888899999999999999986433322 33333332 37999999999998653
No 55
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=3e-17 Score=161.50 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=81.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
..+..+|+++|..|+|||||+++|+. +... .. . .|+......+.+++..+.+|||||+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~---~~------------~----~t~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM--NEVV---HT------------S----PTIGSNVEEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT--TSCE---EE------------E----CCSSSSCEEEEETTEEEEEEEESSSG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc--CCCC---cc------------C----CcCceeeEEEEECCEEEEEEECCCCH
Confidence 34568999999999999999999972 1110 00 0 11112223455678999999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 77 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 988888888999999999999998744332 333444432 5899999999999865
No 56
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=3e-16 Score=154.68 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|. +... .. .....|.+ ...+.+++..+.+|||||+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~---~~~~--~~------------~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA---SEDI--SH------------ITPTQGFN----IKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC---CSCC--EE------------EEEETTEE----EEEEEETTEEEEEEECSSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHh---cCCC--Cc------------ccCcCCeE----EEEEEECCEEEEEEECCCCHH
Confidence 456899999999999999999995 2110 00 01112222 234556789999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHH-H---HcCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA-D---KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~-~---~~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|+++...... ...+..+ . ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 99989999999999999999998644332 2233333 2 247999999999998754
No 57
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=9.3e-17 Score=157.19 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+...-... .....|.+.......+......+.||||||+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 4457999999999999999999972211000 001112222222222222346899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++..... ...++..+... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 9988899999999999999999865433 33444555443 788999999999864
No 58
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=9.7e-17 Score=159.63 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=82.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTP 163 (777)
+.+...+|+++|..|+|||||+++|+ +.... .+....++.+.....+.+++ ..++|||||
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~---~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFT---DDTFC---------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHC---C-----------------------CCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHh---cCCCC---------------cCCCCccceeEEEEEEEECCeEEEEEEEeCC
Confidence 34556899999999999999999995 11100 00111222233333444444 579999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHH---cCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|+.+|...+..+++.+|++|+|+|++++...+.... +..+.. .++|+++|+||+|+..
T Consensus 84 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999999999999999999998655444332 233433 3789999999999854
No 59
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=1.1e-16 Score=154.55 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=82.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|+.. .... ......|.+.......+...+..+++|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG--QFHE--------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS--CCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC--CCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 3569999999999999999999721 1110 00112333443333344444678999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
......+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 98899999999999999999986543332 333444433 788999999999854
No 60
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.71 E-value=2.8e-17 Score=163.04 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=82.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEE-EEEecCeEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~-~~~~~~~~i~liDTPG~~ 166 (777)
++..+|+++|++|+|||||++.|. +..... ..++............|.+...... .+......+++|||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~---~~~~~~---~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY---SKVPEG---RKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH---HTSCGG---GBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHH---hhcccc---ccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 456799999999999999997664 211110 0000000000000111111111111 222245689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH---------cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~---------~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++|+|+|++++...++.+.++.+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999998766666555544433 4899999999999865
No 61
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.71 E-value=4.5e-17 Score=170.35 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=86.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+|+|. |.....+. .+|+|+......+.+++..+.||||||+.+|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~---g~~~~~~~---------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT---GTKQYVAN---------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH---TTCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45789999999999999999995 32222221 2577888888888888899999999999876
Q ss_pred HH-----H-HHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 TL-----E-VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 ~~-----~-~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.. . ...++ ..+|++++|+|++.. .....++.++...++|+++|+||+|+.
T Consensus 66 ~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 66 GYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp CSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 42 1 23333 478999999999974 344556777888899999999999974
No 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=7.8e-17 Score=169.82 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=88.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+.++|+++|++|+|||||+|+|+ |.....+. .+|+|+......+.+++..+++|||||+.+|
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~---g~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALT---GLRQHVGN---------------WPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHH---TTCEEEEE---------------CTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence 35799999999999999999995 43322222 3567888888888999999999999999887
Q ss_pred HH------HHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcC-CCEEEEEEccCCC
Q 004038 169 TL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (777)
Q Consensus 169 ~~------~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~iiviNKiD~~ 220 (777)
.. ....++ ..+|++++|+|++.+ ......+.++...+ +|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 64 TAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 54 233333 469999999999985 45666777777788 9999999999974
No 63
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=1.3e-16 Score=154.10 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|+...- .. ......|.+.......+......+.+|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSF--DP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC--CT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC--CC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 357999999999999999999972211 00 01112344444333333334478999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 88889999999999999999986554443 33344444 3678899999999864
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.3e-16 Score=158.52 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=85.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|.+|+|||||+++|+...- .. ......|.+.......+......++||||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF--DH--------------NISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC--CT--------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC--CC--------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 4567999999999999999999973210 00 0111234454444444444567899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc---CCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++|+|+|+++........ ++..+... ++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9988999999999999999999865433333 33444443 789999999999853
No 65
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.70 E-value=1.1e-16 Score=155.35 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|. +..... +...|+|+......+.+++..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~---~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT---GENVYI---------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH---CCSSSC---------------C-----CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCeec---------------cCCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 3689999999999999999996 221111 1123455555556677788999999999998874
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 170 ------~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.....+++ .+|++++|+|+.+. ......+..+.+.++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 22234443 78999999999872 233445566666799999999999974
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=159.06 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=79.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
..++..+|+++|++|+|||||+++|+... .... .....|.+.......+......++||||||+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 87 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE--FREN--------------ISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC--CC------------------------CEEEEEEETTEEEEEEEEECTTC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC--CCcc--------------CCCCccceeEEEEEEECCEEEEEEEEECCCC
Confidence 34567899999999999999999997221 1000 0011222332233333333467999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|++++...+... ++..+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 999999999999999999999999865444333 3333433 3799999999999853
No 67
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.70 E-value=2.2e-16 Score=154.03 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=80.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC---eEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDTPG 164 (777)
.+..+|+++|++|+|||||+++|+...- ..+..+.+..+.....+.+.+ ..+++|||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF------------------GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT------------------THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC------------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC
Confidence 4567999999999999999999972210 011111222222333444444 7899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH-----cCCC-EEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK-----YGVP-RICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p-~iiviNKiD~~~ 221 (777)
+..|...+..+++.+|++|+|+|+++....+.. .++..+.. .+.| +++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999988889999999999999999986543322 23333433 2677 688999999864
No 68
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=158.02 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
+...+|+++|++|+|||||+++|+...-. .+...+++.+.....+.+++ ..+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC------------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC------------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 55789999999999999999999722110 11122334444444555555 67999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHc---CCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++|+|+|+++...... ...+..+... ++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999889999999999999999998543322 2233444333 7899999999998643
No 69
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.70 E-value=7e-17 Score=159.27 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=82.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|+. +. ... + ..|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~--~~---~~~---------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG--ED---VDT---------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT--CC---CSS---------C-------CCCSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc--CC---CCc---------c-------cccCccceEEEEECCEEEEEEECCCCHh
Confidence 4568999999999999999999962 11 000 0 0122222344556789999999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 88888888899999999999998654332 233343333 47999999999998653
No 70
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=2.4e-16 Score=153.66 Aligned_cols=119 Identities=16% Similarity=0.086 Sum_probs=83.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.++..+|+++|++|+|||||+++|+....... .....|.+.......+......+.+|||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD----------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 35578999999999999999999973221000 00112223333333333334689999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+|...+..+++.+|++|+|+|++++....... ++..+.. .++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999999999999999999865433332 2333333 5789999999999853
No 71
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2.7e-16 Score=151.73 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=81.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|+...-... .....|.+.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN----------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEECCEEEEEEEEECCCChhhh
Confidence 35899999999999999999973211000 00112333333333333234589999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
..+..+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 88999999999999999999864433332 2333332 37899999999998643
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.69 E-value=2.3e-16 Score=155.90 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=81.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----------Ce
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----------KH 155 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----------~~ 155 (777)
.++..+|+++|++|+|||||+++|+... .... . ....|.+... ...+... ..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~----~----------~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 70 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGK--FNSK----F----------ITTVGIDFRE-KRVVYRANGPDGAVGRGQRI 70 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--CCCS----C----------CCCCSEEEEE-EEEEECTTSCCCSSCCCEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCC--CCcC----c----------ccccceeeee-EEEEEecCCcccccccCcEE
Confidence 4567899999999999999999997321 1000 0 0001111110 1122222 35
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.+++|||||+.+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 89999999999999999999999999999999998654443 233344433 5899999999999854
No 73
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=9.1e-17 Score=159.10 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=83.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|.+|+|||||+++|+...-... .....|.+.......+......+++|||||+.+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA----------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----------------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 4568999999999999999999973211000 001123333333333333456899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHc---CCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 88888888999999999999987543332 2344455543 789999999999854
No 74
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=4.3e-16 Score=156.32 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=81.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
.++..+|+++|.+|+|||||+++|+... ... +....++.+.....+.+++ ..+.||||||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 87 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA--FSE----------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC--C--------------------------CEEEEEEEETTEEEEEEEECCTT
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC--CCC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECCC
Confidence 3567899999999999999999996221 100 0011112222233444444 5899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+.+|...+..+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred cHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 99999999999999999999999987543222 233444443 4689999999999864
No 75
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=2.6e-16 Score=157.52 Aligned_cols=118 Identities=17% Similarity=0.043 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|++|+|||||+++|+.. .... . .....|++.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-----------~---~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD--SFTP-----------A---FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC--CCCS-----------C---CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC-----------C---cCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 45689999999999999999999721 1100 0 001123333333333333456899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++|+|+|++++...... .++..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999999999999999999986443332 33344444 4789999999999864
No 76
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.69 E-value=9.5e-17 Score=159.62 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|... .... ...|+......+.+++..+++|||||+.+|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~--~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND--RLAT-------------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS--CCCC-------------------CCCCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC--CCCc-------------------cccCCCCCeEEEEECCEEEEEEECCCCHHH
Confidence 3469999999999999999999721 1110 011223334566778899999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|++++..... ...+..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 8777778899999999999998754332 22333332 25799999999999875
No 77
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=2.7e-16 Score=154.42 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
..+..+|+++|++|+|||||+++|+... ... ++. ...+... ...+..++ ..+.+|||||
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~-----------~~~---~t~~~~~---~~~~~~~~~~~~l~i~Dt~G 75 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKI--FVD-----------DYD---PTIEDSY---LKHTEIDNQWAILDVLDTAG 75 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCS-----------CCC---TTCCEEE---EEEEEETTEEEEEEEEECCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCC--CCC-----------CCC---CCcccee---EEEEEeCCcEEEEEEEECCC
Confidence 3456899999999999999999997221 100 000 0011111 12223333 4577799999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchH-----HHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQ-----SETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~-----~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.+|......+++.+|++++|+|+++..... ...+.+.....++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp CGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9999888899999999999999999863322 22222333346899999999999864
No 78
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=2.2e-16 Score=154.40 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|... .... .....|+|.......+.+++..+.+|||||+.++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~---~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR---EAAI--------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS---CCSC--------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---Ccce--------------eeCCCCceeceeeEEEEECCeEEEEEECCCcccch
Confidence 358999999999999999999621 1100 01123455555555667778889999999997542
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc---CCCEEEEEEccCCC
Q 004038 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRL 220 (777)
Q Consensus 170 --------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~iiviNKiD~~ 220 (777)
.....+++.+|++++|+|+++........++..+.+. ++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1133568999999999999987665555666555543 68999999999974
No 79
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=4.5e-17 Score=183.36 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc----
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~---- 166 (777)
++|+|+|++|+|||||+|+|+ |.. ....+...|+|.+.....+.|.+..+++|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~---~~~--------------~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA---GER--------------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE---EEE--------------CC-----------CEEEECTTCSSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCC--------------ceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch
Confidence 689999999999999999994 211 01123356888888888888999999999999986
Q ss_pred ----chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 167 ----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 ----df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+...+..+++.+|++|+|+|+.++....+..+.+.+++.++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 5667788899999999999999999999998888888889999999999999764
No 80
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=156.74 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=84.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
.++..+|+++|++|+|||||+++|+ +... ..+...+++.......+.+.+ ..+++|||||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~---~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 67 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFA---DNTF---------------SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHC---SCC------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHh---cCCC---------------CCccCCCceeEEEEEEEEECCEEEEEEEEcCCC
Confidence 3567899999999999999999995 2110 011123344455555556666 6899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc--CCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
+.+|......+++.+|++|+|+|++++....... .+..+... ++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 9988888888899999999999999865444333 33333333 589999999999764
No 81
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=4.2e-17 Score=161.39 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|. .+... +. . .|+......+.+++..+++|||||+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~--~~~~~------------~~---~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH--LGDVV------------TT---V----PTVGVNLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC--CSCCE------------EE---C----SSTTCCEEEEEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHH--cCCCC------------Cc---C----CCCceEEEEEEECCEEEEEEECCCCHh
Confidence 456799999999999999999994 11110 00 0 022223344566789999999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 87777778899999999999998643322 223333332 37999999999998754
No 82
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.68 E-value=4.2e-16 Score=151.93 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=80.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
+..+|+++|+.|+|||||+++|+...-.. .....++++.....+.+++ ..+.+|||||+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS------------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 34799999999999999999997221100 0112223333333444444 589999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999888999999999999999987543222 223333332 4789999999999864
No 83
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=4.2e-16 Score=152.22 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=79.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTP 163 (777)
+..+..+|+++|+.|+|||||+++|+...-.. ++ ....+.... ..+.+++ ..+.+||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------~~---~~t~~~~~~---~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS-------------DY---DPTIEDSYT---KICSVDGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS-------------SC---CTTCCEEEE---EEEEETTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc-------------cc---CCCcCceEE---EEEEECCEEEEEEEEECC
Confidence 34567899999999999999999997321100 00 000111111 2233443 578999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHH----HHcCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~----~~~~~p~iiviNKiD~~~ 221 (777)
|+.+|......+++.+|++++|+|+++....... ..+..+ ...++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999988888899999999999999985332222 222222 235899999999999854
No 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=5.7e-16 Score=154.57 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=80.4
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE---ecCeEEEEE
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINII 160 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~---~~~~~i~li 160 (777)
..+.++..+|+++|..|+|||||++++. +..... ...+.+......... .....+++|
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~---~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~ 74 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVF---HKMSPN----------------ETLFLESTNKIYKDDISNSSFVNFQIW 74 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHH---SCCCGG----------------GGGGCCCCCSCEEEEECCTTSCCEEEE
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHH---hcCCCc----------------ceeeeccccceeeeeccCCCeeEEEEE
Confidence 3445667899999999999999999875 211100 111122222222222 245789999
Q ss_pred eCCCCcchHHHH---HHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH-----cCCCEEEEEEccCCCCc
Q 004038 161 DTPGHVDFTLEV---ERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 161 DTPG~~df~~~~---~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~iiviNKiD~~~~ 222 (777)
||||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 999999987776 789999999999999999744444444444433 38999999999998754
No 85
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.5e-16 Score=153.93 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+...-.. . .....++.......+..++ ..+++|||||+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---G--------------TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---C--------------CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---C--------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 456799999999999999999997321100 0 0011122222222233343 58999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|++++..... ...+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 9998888889999999999999998654333 223344433 5789999999999865
No 86
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=3.1e-16 Score=154.27 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.+|||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD------------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT------------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 556899999999999999999997321100 0112223333333444444 68999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH---HcCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|+++....+... .+..+. ..++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999998999999999999999999865433332 223332 35789999999999853
No 87
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=155.25 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=83.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~ 166 (777)
.++..+|+|+|++|+|||||+++|+........ ....|.+.......+......+.||||||+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 356789999999999999999999732111000 0112333333333333345789999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 998888999999999999999998544322 233344443 3789999999999864
No 88
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.68 E-value=3.4e-16 Score=150.44 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=77.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+++|+.. ..... +. ...+ +.. ...+... ...+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------~~---~~~~-~~~--~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG--TFIEK-----------YD---PTIE-DFY--RKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS--CCCSC-----------CC---TTCC-EEE--EEEEEETTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC--CCccc-----------CC---CCcc-eeE--EEEEEECCEEEEEEEEECCCchh
Confidence 468999999999999999999732 11100 00 0001 111 1222333 35699999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHH----HHcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++++|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 99999999999999999999997543222 2222222 234899999999999853
No 89
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=1.2e-16 Score=168.30 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=81.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+|+|. |.....+ ...|+|+......+.+ +..+++|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~---g~~~~v~---------------~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT---GHNQRVG---------------NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH---CCCCCCC---------------SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHH---CCCCccc---------------CCCCCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 4689999999999999999995 3221111 1136676666666665 7789999999998875
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 170 ------~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
.....++. .+|++++|+|++.. .....++.++.+.++|+++|+||+|+.
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 22344555 59999999999873 334455567777899999999999974
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=8.8e-16 Score=148.43 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=77.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|+. +..... .. ...+.+.. ...........+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~--~~~~~~-----------~~---~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK--GTFRES-----------YI---PTVEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT--CCCCSS-----------CC---CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------CC---CCccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 46899999999999999999972 111000 00 00111111 111222234579999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchH-HHHHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~-~~~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++++|+|+++..... ....+..+.+ .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 99999999999999999999754322 2234444443 3799999999999854
No 91
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=8e-17 Score=158.10 Aligned_cols=114 Identities=21% Similarity=0.136 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
++..+|+++|++|+|||||+++|+ .+.. .. ...|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~--~~~~---~~----------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ--IGEV---VT----------------TKPTIGFNVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC--CSEE---EE----------------ECSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHh--cCCc---Cc----------------cCCcCccceEEEEECCEEEEEEECCCCHh
Confidence 567899999999999999999995 1111 00 00122222344566789999999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHH----HcCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 88778888999999999999988644332 23334333 257899999999998653
No 92
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=2.7e-16 Score=155.73 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=78.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
..+..+|+++|++|+|||||+++|+... ... .....++.+.....+.+++ ..++||||||
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGR--FPD----------------RTEATIGVDFRERAVDIDGERIKIQLWDTAG 78 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCS----------------SCCCCCSCCEEEEEEEETTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCC--CCC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECCC
Confidence 3567899999999999999999997321 110 0011112222222333343 6899999999
Q ss_pred CcchH-HHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 165 HVDFT-LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~-~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
+.+|. .....+++.+|++|+|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp SHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred chhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99887 6778889999999999999975432222 2223332 34799999999999854
No 93
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.68 E-value=5.7e-16 Score=152.51 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=75.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
+..+|+++|++|+|||||+++|+....... . .+.+.......+.+.+ ..+++|||||+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~--------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE-----Y--------------DPTIEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC-----C--------------CTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC-----C--------------CCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence 346899999999999999999973211000 0 0111111112223333 457889999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp --CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 99888999999999999999999754333222 2233333 4799999999999864
No 94
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=1.4e-16 Score=156.42 Aligned_cols=116 Identities=17% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
+...+|+++|++|+|||||+++|+... . ..+..++++.+.....+.+++ ..++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA--F----------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--C----------------CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 456899999999999999999996211 0 011122333333334445555 78999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 9988888888899999999999998544332 233444444 3789999999999864
No 95
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=3.1e-16 Score=154.73 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|+ +..... +...++|+......+.+++..+++|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~---~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT---GENVYI---------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH---TTCEEE---------------EECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCccc---------------cCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 45799999999999999999996 211111 112456666666777788899999999999887
Q ss_pred H------HHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 T------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 ~------~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
. .....+++ .+|++++|+|+.. ......++..+...++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 3 22334444 4899999999986 2344456666777899999999999975
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.67 E-value=6.6e-16 Score=153.66 Aligned_cols=64 Identities=23% Similarity=0.192 Sum_probs=52.6
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHH-HcCCCEEEEEEccC
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD-KYGVPRICFVNKMD 218 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~-~~~~p~iiviNKiD 218 (777)
..++||||||+.+|...+..+++.+|++|+|+|++++...+... ++..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 78999999999999888999999999999999999875544433 333333 35799999999999
No 97
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=7.2e-16 Score=150.24 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=80.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|++|+|||||+++|+...- . .+..+.++.......+.+++ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKF--D----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--C----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCC--C----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 4467999999999999999999972211 0 00111222233333444444 58999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH-------cCCCEEEEEEccCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-------YGVPRICFVNKMDRL 220 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~-------~~~p~iiviNKiD~~ 220 (777)
.+|......+++.+|++++|+|+.+....+... ++..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999988888999999999999999865433322 2233322 578999999999986
No 98
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.6e-16 Score=156.13 Aligned_cols=118 Identities=18% Similarity=0.060 Sum_probs=85.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|+.|+|||||+++|+...-.... ....|++.......+......+.||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF----------------VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE----------------EEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc----------------CCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 45679999999999999999999733211100 00123333344444445678899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999999999999999999997543222 234444444 4789999999999854
No 99
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=5.9e-16 Score=149.07 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|+. +.... . ... + .+... .....+......+.+|||||+.+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~--~~~~~--~-~~~-t----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ--GIFVE--K-YDP-T----------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--CCCCC--S-CCC-C----------SEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHc--CCCCC--C-CCC-C----------ccceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 46899999999999999999973 21110 0 000 0 01111 1111222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 889999999999999999997532222 22233332 24899999999999864
No 100
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.67 E-value=4.2e-16 Score=156.08 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=77.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|. .+... .+ ..|+......+.+++..+++|||||+.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~--~~~~~------------~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK--DDRLG------------QH-------VPTLHPTSEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS--CC-------------------------CCCCCSCEEEEETTEEEEEEEECC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh--cCCCC------------cc-------CCCCCceeEEEEECCEEEEEEECCCcHh
Confidence 345689999999999999999994 11110 00 0122223345667789999999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
|...+..+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 87777788899999999999998643332 22333332 24899999999999875
No 101
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.67 E-value=3e-16 Score=151.63 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|++|+|||||+++|+... ... ....+++.......+.+++ ..+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDK--FNP----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCC--CCC-----------------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCC--CCC----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 35799999999999999999997221 100 0111222222233344443 579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~ 220 (777)
+|...+..+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 988888889999999999999997644322 233344443 378999999999984
No 102
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.67 E-value=1.5e-15 Score=146.06 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~ 166 (777)
+..+|+++|++|+|||||+++|+... ... . ... + .+.+. ...+.+. ...+.+|||||+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~--~-~~~-t----------~~~~~---~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVE--D-YEP-T----------KADSY---RKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCS--C-CCT-T----------CCEEE---EEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCC--C-CCC-C----------cceEE---EEEEEECCEEEEEEEEECCCcc
Confidence 35799999999999999999997321 100 0 000 0 11111 1122333 3579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 9999999999999999999999975433222 22233322 3799999999999864
No 103
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.67 E-value=8.2e-16 Score=148.20 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+++|++|+|||||+++|. +.... ......|.+.. ....+......+.+|||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~---~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG---GVEDG--------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC---CC------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHc---Ccccc--------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 4589999999999999999994 22111 01112233332 112223344678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 ~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++++|+|.++...... ...+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 888889999999999999997543222 233344443 3799999999999864
No 104
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.67 E-value=1e-15 Score=150.25 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|++|+|||||+++|+... ... ++ .+.+.......+.+.+ ..+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------~~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDE--FVE-----------DY------EPTKADSYRKKVVLDGEEVQIDILDTAGQ 76 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSC--CCC-----------SC------CTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----------cC------CCccceEEEEEEEECCEEEEEEEEECCCC
Confidence 346799999999999999999997321 100 00 0011111112233333 57999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++++|+|+.+....... .++..+.. .++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999999975432222 22233322 3799999999999854
No 105
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=2.9e-16 Score=158.19 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
.....+|+++|++|+|||||+++|+... .. .+...+++.......+.+.+ ..+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDK--FN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCC--CC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCC
Confidence 3556899999999999999999997221 10 00112223333334445555 6799999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHHc---CCCEEEEEEccCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRL 220 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iiviNKiD~~ 220 (777)
+.+|...+..+++.+|++|+|+|+.+...... ..++..+... ++|+++|+||+|+.
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99988888889999999999999997643322 2333444432 78999999999984
No 106
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.67 E-value=6.9e-17 Score=164.35 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=88.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
......+|+++|.+|+|||||+++|+... ... ......|++.......+...+..+++|||||+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGE--FEK--------------KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHH--HTC--------------EEETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 34566799999999999999999965211 000 01123456666665555556688999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHHc--CCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++|+|+|+++....+....| ..+... ++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99888888899999999999999986554433333 333332 8999999999998653
No 107
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.66 E-value=3.3e-16 Score=150.97 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=78.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+.. ..... ....++.+.....+.+. ...+.+|||||+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG--IFTKD----------------YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC--CCCCC----------------SSCCCSSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC--CCCCC----------------CCCceEEEEEEEEEEECCEEEEEEEEcCCCc
Confidence 34679999999999999999999722 11100 00111111112223333 458999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 9988888889999999999999998543222 223333333 3899999999999864
No 108
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=6.2e-16 Score=174.23 Aligned_cols=118 Identities=17% Similarity=0.259 Sum_probs=88.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+|+|++|+|||||+|+|+ |..... .....|+|.+.....+.+++..+.+|||||+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~---g~~~~~--------------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAIL---NKERAL--------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHH---TSTTEE--------------ECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ccCceEEEECCCCCCHHHHHHHHh---CCcccc--------------cCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 356899999999999999999996 322111 112356777777778888999999999999854
Q ss_pred hHH------------HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 168 FTL------------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~------------~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+.. ....+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...
T Consensus 241 ~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 241 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp ---------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred ccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 322 2356889999999999999999888888888888899999999999998653
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.66 E-value=8.8e-16 Score=155.11 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec---CeEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDTPG 164 (777)
.+..+|+++|++|+|||||+++|+... ... ...|+......+.++ +..+++|||||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 63 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD-------------------TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC--CCC-------------------BCCCCSCEEEEEECSSTTCCEEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--ccc-------------------ccCCcceeeEEEEecCCCccEEEEEECCC
Confidence 345799999999999999999997321 100 001111222234444 57899999999
Q ss_pred CcchHH-HHHHHHHhcCeEEEEEeCCCCCchHHHH---HHHHH-H-----HcCCCEEEEEEccCCCCc-chHhHHHHHHH
Q 004038 165 HVDFTL-EVERALRVLDGAICLFDSVAGVEPQSET---VWRQA-D-----KYGVPRICFVNKMDRLGA-NFFRTRDMIVT 233 (777)
Q Consensus 165 ~~df~~-~~~~~l~~aD~~ilVvda~~g~~~~~~~---~~~~~-~-----~~~~p~iiviNKiD~~~~-~~~~~~~~i~~ 233 (777)
+.+|.. .+..+++.+|++|+|+|+++ ....... .|... . ..++|+++|+||+|+... ......+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~ 142 (214)
T 2fh5_B 64 HESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 142 (214)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHH
Confidence 999987 56677899999999999987 2222222 22222 1 236899999999999764 35556666665
Q ss_pred HhC
Q 004038 234 NLG 236 (777)
Q Consensus 234 ~l~ 236 (777)
.++
T Consensus 143 ~l~ 145 (214)
T 2fh5_B 143 ELN 145 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 110
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=1.2e-16 Score=156.60 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|++|+|||||+++|+... ... ++ ....+.+. ...+.+++ ..+++|||||+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----------~~---~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~ 64 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVD-----------SY---DPTIENTF---TKLITVNGQEYHLQLVDTAGQ 64 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCS-----------CC---CTTCCEEE---EEEEEETTEEEEEEEEECCCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCC-----------CC---CCCccccE---EEEEEECCEEEEEEEEeCCCc
Confidence 356799999999999999999997221 100 00 00112222 22233333 67899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-----HHHHHHHHcCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++++|+|+++....... .+.+.+...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp CTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 99877777788999999999999974333222 222233334899999999999854
No 111
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=169.28 Aligned_cols=113 Identities=20% Similarity=0.128 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+|+|++|+|||||+++|+ .+... .. ..|+......+.+++..++||||||+.+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~--~~~~~------------~~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLK--LGEIV------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKI 222 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTC--SSCCE------------EE-------EEETTEEEEEEEETTEEEEEEECC-----
T ss_pred CcceEEEECCCCccHHHHHHHHh--CCCCC------------Cc-------ccccceEEEEEecCcEEEEEEECCCCHhH
Confidence 44589999999999999999995 11110 00 01444455667778899999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
......+++.+|++|+|+|+++...... ..+...+.. .++|+++|+||+|+...
T Consensus 223 ~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 8889999999999999999986543322 223333333 28999999999998764
No 112
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.1e-16 Score=157.05 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|+.|+|||||+++|+... ... . ... +. +... ...+.+++ ..+.+|||||+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~--~~~--~-~~~-t~----------~~~~---~~~~~~~~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDA--FPE--E-YVP-TV----------FDHY---AVSVTVGGKQYLLGLYDTAGQ 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSS--CCC--S-CCC-SS----------CCCE---EEEEESSSCEEEEEEECCCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCC--C-CCC-cc----------ccee---EEEEEECCEEEEEEEEECCCC
Confidence 456799999999999999999997321 100 0 000 10 1111 11233333 67899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 99988888889999999999999986543333 344555554 8999999999998764
No 113
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=150.13 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d- 167 (777)
+..+|+++|++|+|||||+++|+ +..... .....|.+.......+......+.+|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~---~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA---GKQERD--------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH---CC-------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHh---cCCCcc--------------ccCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 45799999999999999999996 211000 011133333333222222235789999999987
Q ss_pred -hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHHc----CCCEEEEEEccCCCC
Q 004038 168 -FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY----GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 -f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~iiviNKiD~~~ 221 (777)
+.......++.+|++++|+|+++....... .++..+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 444455567889999999999975433322 334445443 799999999999864
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=3.6e-16 Score=158.31 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec------------C
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------K 154 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------~ 154 (777)
.++..+|+++|++|+|||||+++|+. +.... +....+........+.+. .
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD--NKFNP----------------KFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC--SCCCC----------------EEEEEEEEEEEEEEEEEEC-------CCEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc--CCCCc----------------CCCCceeEEEEEEEEEECCccccccccCcee
Confidence 35668999999999999999999972 11100 000111111222222222 4
Q ss_pred eEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH----cCCCEEEEEEccCCCC
Q 004038 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~iiviNKiD~~~ 221 (777)
..++||||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 6899999999999999999999999999999999985443333222 22222 4789999999999854
No 115
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.66 E-value=2e-15 Score=151.02 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTP 163 (777)
+..+..+|+++|++|+|||||+++|+... ... ++ .+.+.......+.+++ ..+.|||||
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------~~------~~t~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVE-----------DY------EPTKADSYRKKVVLDGEEVQIDILDTA 70 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCT-----------TC------CTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCC--CCC-----------CC------CCccceEEEEEEEECCEEEEEEEEcCC
Confidence 34567899999999999999999997321 100 00 0011111112233333 479999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
|+.+|......+++.+|++++|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 9999999999999999999999999975433222 22233332 3799999999999864
No 116
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.66 E-value=5e-16 Score=151.81 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec---CeEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDTPG 164 (777)
++..+|+++|++|+|||||+++|+...-.. .....++.+.....+.++ ...+.+|||||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ------------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT------------------TC---CCCSCEEEEECCSSSCCEEEEEECCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc------------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCC
Confidence 457899999999999999999997321100 001111222222233333 46899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH-------cCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~-------~~~p~iiviNKiD~~~ 221 (777)
+.+|......+++.+|++|+|+|+++........ ++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 9999888888899999999999999865433332 2223322 5789999999999853
No 117
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=4.4e-16 Score=154.31 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=82.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|+...-.. ......|.+.......+......+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP----------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 45799999999999999999997321100 00111233333333333334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++|+|+|+.+........ ++..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 888899999999999999999864433322 3344443 3689999999999843
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.66 E-value=2.5e-15 Score=153.73 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.++|+++|.+|+|||||+++|+ +..... ....+.|.......+.+++..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~---~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVS---RANVDV---------------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHT---TTCEEE---------------ECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCcc---------------CCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 456899999999999999999995 211110 01234455555556667788999999999943
Q ss_pred h---------HHHHHHHHHhcCeEEEEEeCCCCCch---HHHHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 168 F---------TLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f---------~~~~~~~l~~aD~~ilVvda~~g~~~---~~~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
+ ...+......+|++|+|+|+++.... ....++..+... ++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 1 11223346778999999999986542 234455666665 899999999999864
No 119
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=8e-16 Score=154.60 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=82.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
.++..+|+++|.+|+|||||+++|+... .. ......++.+.....+.+++ ..++||||||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP----------------PGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSS--CC----------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCC--CC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 3567899999999999999999997221 10 00111222233333444444 5799999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+.+|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999998888999999999999999976433222 23333333 3789999999999853
No 120
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=2.1e-16 Score=178.94 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=88.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC----
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG---- 164 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG---- 164 (777)
+.++|+|+|++|+|||||+|+|+ |. .. .......|+|.+.....+.|.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~---~~--~~------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~ 84 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIA---GE--RI------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 84 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHE---EE--EE------------C-----------CEEEECTTCSSCCEEECCCC----
T ss_pred CCCEEEEECCCCCcHHHHHHHHh---CC--CC------------cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc
Confidence 45799999999999999999994 21 11 11233468888888888889999999999999
Q ss_pred ----CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 165 ----HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ----~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+..+...+..+++.+|++|+|+|+.+++...+..+++.+++.++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp --CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 445677788899999999999999999999999999999999999999999999753
No 121
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.65 E-value=4.8e-16 Score=154.23 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|+.|+|||||+++|+...-. .. .....|.+... ..+.+++ ..++||||||+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV--------------HDLTIGVEFGA--RMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC--C-------------------CCSSEEE--EEEEETTEEEEEEEECCTTG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC--CC--------------CCCcccceeEE--EEEEECCEEEEEEEEECCCc
Confidence 45679999999999999999999732110 00 00011222222 2333333 58999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 9988888899999999999999997544333 233444443 3789999999999854
No 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=1.3e-15 Score=147.30 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=68.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+++|+...... .. ....+.......+.++ ...+.+|||||+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH--AH----------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc--cc----------------cCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 4689999999999999999996211100 00 0011122222223333 46788999999998
Q ss_pred hHH-HHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 168 FTL-EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~-~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+.. ....+++.+|++++|+|+++...... ...+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred cchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 876 45556889999999999997433222 223333333 2799999999999863
No 123
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.65 E-value=4.8e-16 Score=152.62 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=79.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+++|++|+|||||+++|+... ... .. . .+. +... .....+......+.+|||||+.+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~--~~~--~~-~-~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNA--FPG--EY-I-PTV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS--CCS--SC-C-CCS----------CCEE-EEEEEETTEEEEEEEECCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--CCC--Cc-C-Ccc----------ccee-EEEEEECCEEEEEEEEECCCCHhH
Confidence 34689999999999999999997321 110 00 0 010 0011 111112223356789999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
......+++.+|++++|+|++++...+... ++..+... ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 877777889999999999999865444432 44455544 8999999999998654
No 124
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=4.4e-16 Score=156.60 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=80.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe--cCeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDTPG~ 165 (777)
.+..+|+++|++|+|||||+++|+...-.... .+++.......+.+ ....+++|||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-------------------CCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-------------------CCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 45679999999999999999999732111000 11111111122223 3356679999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 99988888889999999999999987655444 344455554 8999999999998754
No 125
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=2.4e-15 Score=144.15 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~df 168 (777)
.+|+++|+.|+|||||+++|+.... .. . ... +. +.. ....+... ...+.+|||||+.+|
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~--~-~~~-~~----------~~~---~~~~~~~~~~~~~~~~~D~~G~~~~ 64 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VD--E-CDP-TI----------EDS---YRKQVVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CS--C-CCT-TC----------CEE---EEEEEEETTEEEEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--cc--c-cCC-cc----------ceE---EEEEEEECCEEEEEEEEECCCchhh
Confidence 5899999999999999999973211 00 0 000 00 111 11122222 356899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 8888999999999999999987543322 233333333 2799999999999865
No 126
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.65 E-value=5.7e-16 Score=149.76 Aligned_cols=116 Identities=16% Similarity=0.043 Sum_probs=72.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+...-... ....++.......+.++ ...+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK------------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS------------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC------------------CCCccceEEEEEEEEECCEEEEEEEEECCCc
Confidence 3457999999999999999999973211000 00111111122223333 357899999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++++|+|+++........ ++..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 998888888889999999999999865433332 3333332 5799999999999864
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.64 E-value=7.4e-16 Score=160.10 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=90.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC--
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH-- 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~-- 165 (777)
....+|+++|++|+|||||+|+|+........ ....|+|.......+.+++..++||||||+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSR----------------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCcccc----------------CCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 34579999999999999999999722211100 011345666666778889999999999998
Q ss_pred ------cchHHHHHHHH----HhcCeEEEEEeCCCCCchHHHHHHHHHHHc------CCCEEEEEEccCCCCcchH
Q 004038 166 ------VDFTLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY------GVPRICFVNKMDRLGANFF 225 (777)
Q Consensus 166 ------~df~~~~~~~l----~~aD~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~iiviNKiD~~~~~~~ 225 (777)
.++..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+++|.||+|+.+.+++
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 157 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH 157 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH
Confidence 55666777776 89999999999985 777777777777664 7899999999999765543
No 128
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=157.74 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=78.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+..+..+|+++|.+|+|||||+++|+...- .. ++. ...+.+. .....+......++||||||+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~-----------~~~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 82 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEF--SE-----------GYD---PTVENTY-SKIVTLGKDEFHLHLVDTAGQ 82 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCC--CS-----------CCC---CCSEEEE-EEEEC----CEEEEEEEECCC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCC--CC-----------CCC---CccceEE-EEEEEECCEEEEEEEEECCCc
Confidence 446678999999999999999999973211 10 000 0011111 222233345678999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.+|......+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 998888888899999999999999754333322 2333332 3789999999999864
No 129
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.64 E-value=2.7e-16 Score=153.99 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+... ... . ..+ +..+. .. ....+......+.+|||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~--~~~--~-~~~-t~~~~----------~~-~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPT--D-YVP-TVFDN----------FS-ANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC--CC------------------------CB-CCCC-------CEEECCCC-CT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCC--C-CCC-eeeee----------EE-EEEEECCEEEEEEEEECCCChh
Confidence 345799999999999999999997321 110 0 000 00000 00 0011122345677999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
|......+++.+|++++|+|+++........ ++..+... ++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 9888888899999999999999865444332 34444443 7999999999998654
No 130
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=5.7e-16 Score=163.50 Aligned_cols=199 Identities=16% Similarity=0.213 Sum_probs=116.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+|+|+ +........ ++ ......+++++......+.+++ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~---~~~~~~~~~-~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY-PG------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS---SSCC----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHh---CCCccccCC-CC------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 5799999999999999999995 211111000 00 0001123344444445555555 4899999999954
Q ss_pred h-------HHHH-------HHHHHh-------------cCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 168 F-------TLEV-------ERALRV-------------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 168 f-------~~~~-------~~~l~~-------------aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
+ ...+ ..+++. +|+++++++.. ++....+..+++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 2222 445554 67888888665 5889999999888877 8999999999998
Q ss_pred CCc-chHhHHHHHHHHh---CCCceeEEec----------------------cCCCCCceeeeecccceEEEecCcCCCc
Q 004038 220 LGA-NFFRTRDMIVTNL---GAKPLVVQLP----------------------VGAEDNFKGVVDLVKMKAIIWSGEELGA 273 (777)
Q Consensus 220 ~~~-~~~~~~~~i~~~l---~~~~~~~~~p----------------------i~~~~~~~g~id~~~~~~~~~~~~~~g~ 273 (777)
... +.....+.+.+.+ +..+. .++ ++.+..+....+.+..+.|.|.
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~--~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg------ 228 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIY--EFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG------ 228 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCC--CC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEE--cCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc------
Confidence 753 3444445555544 33222 222 2333334333445555555552
Q ss_pred eeeeccccHhHHHHHHHHHHHHH-----HHHHhcCHHHHHHH
Q 004038 274 KFAYEDIPANLQKMAQEYRSQMI-----ETIVELDDEAMESY 310 (777)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~-----e~~~~~dd~l~e~~ 310 (777)
..+++......+..+|+.|+ |.....++.++|+|
T Consensus 229 ---~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 229 ---VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp ---EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred ---eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444455666777776 88888888888888
No 131
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3e-15 Score=148.94 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|++|+|||||+++|+... ... .+. ...+.+.. ....+......+.||||||+.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----------~~~---~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRD-----------TYI---PTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSC--CCC-----------TTS---CCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCC--CCC-----------ccc---Ccccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 456799999999999999999997321 100 000 00111111 1112222345799999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99989999999999999999987533222 223333332 3789999999999864
No 132
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.64 E-value=9.6e-16 Score=153.88 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=81.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+...- . ....+.++.......+.+++ ..+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY--T----------------NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC--C----------------TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C----------------CCCCCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 4568999999999999999999973211 0 00011222222233344444 58999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|+++........ ++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 998888888899999999999999865444333 3334433 3689999999999864
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=4.8e-16 Score=175.94 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=70.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+|+|++|+|||||+|+|+... ........|+|.+.....+.+++..++||||||+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~-----------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE-----------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-----------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 3579999999999999999995211 11122345778877777888899999999999998765
Q ss_pred HHH--------HHHHHhcCeEEEEEeCCCCCch----HHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 170 LEV--------ERALRVLDGAICLFDSVAGVEP----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ~~~--------~~~l~~aD~~ilVvda~~g~~~----~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
..+ ..+++.+|++|+|+|++++... ....+++.+. ++|+++|+||+|+...
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 443 2356789999999999998876 4444444443 7999999999998754
No 134
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.64 E-value=4.6e-16 Score=155.99 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=79.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+...... .....++.+.....+.++ ...+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS------------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC------------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 456899999999999999999997321110 001112222222333333 368999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHH-------cCCCEEEEEEccCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK-------YGVPRICFVNKMDRL 220 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~-------~~~p~iiviNKiD~~ 220 (777)
.+|......+++.+|++|+|+|++++........ +..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9888777788899999999999998654333322 222221 478999999999986
No 135
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.2e-16 Score=173.93 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=146.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCcc------ccchhhhh----hcceeEeeeEE-----
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT------MDWMEQEQ----ERGITITSAAT----- 148 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~------~d~~~~e~----~~g~Ti~~~~~----- 148 (777)
..+...|+++|++|+|||||+++|... .|....+...+.+++. .|....+. .+++ +.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~-i~~~~~~~~l~ 131 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAF-IRPVPSSGHLG 131 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEE-EEEECC-----
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCce-eecCccccccc
Confidence 356789999999999999999999643 2322222233333222 11111110 1111 111000
Q ss_pred -----------EEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 149 -----------TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 149 -----------~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
.+.+.++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~ 204 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKD 204 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCC
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECC
Confidence 11256889999999999886554 4689999999999986643221111 12357899999999
Q ss_pred CCCCc-chHhHHHHHHHHhCC-Cc-----eeEEeccC--CCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHH
Q 004038 218 DRLGA-NFFRTRDMIVTNLGA-KP-----LVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMA 288 (777)
Q Consensus 218 D~~~~-~~~~~~~~i~~~l~~-~~-----~~~~~pi~--~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (777)
|+.+. ++...++++++.++. +. .+..+|++ .+..+.++++.+......|.. | ..+|+ ...
T Consensus 205 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~---~-----~~~~~---~r~ 273 (341)
T 2p67_A 205 DGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA---S-----GRLQQ---VRQ 273 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH---T-----THHHH---HHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh---C-----ChHHH---HHH
Confidence 99864 455556667664432 11 23445654 567777777776654433321 1 12232 123
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcceeEeeccccCCCChHHHHHHHHH
Q 004038 289 QEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD 357 (777)
Q Consensus 289 ~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~~Sa~~~~Gi~~Lld~i~~ 357 (777)
.+++..++|.+ ++.++++|+++ ++.+++...+++++..+.+.|++|. +.|++.+..
T Consensus 274 ~~~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 274 QQSVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 34566666664 78999999995 8888999999999999999999866 677777755
No 136
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=153.67 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|..|+|||||+++|+.. ... ......++.......+..++ ..++||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~--~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN--KFK----------------QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC--CCC----------------ccCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 55789999999999999999999621 110 00011122222223333444 68999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 88877788899999999999999986543332 23333333 4789999999999853
No 137
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.63 E-value=2.5e-15 Score=148.60 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
+..+|+++|..|+|||||+++|+... ... . .. +.+.......+.+.+ ..+.||||||+.
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~--~-~~--------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH--FVD--E-YD--------------PTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS--CCS--C-CC--------------TTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC--Ccc--c-cC--------------CccceEEEEEEEECCEEEEEEEEECCChH
Confidence 34699999999999999999997321 100 0 00 001011112233333 569999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
+|......+++.+|++++|+|+.+........ ++..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ---------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99888889999999999999999865433332 2333333 3799999999999864
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=1.4e-15 Score=151.18 Aligned_cols=117 Identities=11% Similarity=-0.040 Sum_probs=79.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+... ... . ... + .+.+... ...+......+++|||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~--~-~~~-t----------~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGE--IPT--A-YVP-T----------VFENFSH-VMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC--CCS--S-CCC-C----------SEEEEEE-EEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCC--CCC--c-cCC-e----------eeeeeEE-EEEECCEEEEEEEEECCCcHH
Confidence 456799999999999999999997321 100 0 000 0 1111111 111222335679999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHHc--CCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 98888889999999999999998654444 2233444443 789999999999875
No 139
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.62 E-value=3.9e-15 Score=150.82 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~ 165 (777)
.+..+|+++|.+|+|||||+++|+. +.... . + ...+.......+..+ ...+.||||||+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~--~~~~~--~---------~------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD--GAFPE--S---------Y------TPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------------------------CCCCCEEEEEEEEETTEEEEEEEEEC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc--CCCCC--C---------C------CCccceeEEEEEEECCEEEEEEEEECCCc
Confidence 4567999999999999999999961 11100 0 0 000101111122333 347999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHH--cCCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+...
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 99988888899999999999999976443333 23344443 37999999999998754
No 140
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.62 E-value=4e-16 Score=158.08 Aligned_cols=116 Identities=23% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cC--eEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NK--HRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~--~~i~liDTPG 164 (777)
....+|+++|.+|+|||||+++|+. +..... .....+.+.... .+.. .+ ..+++|||||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~--------------~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G 70 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD--GRFEKN--------------YNATVGAVNHPV--TFLDDQGNVIKFNVWDTAG 70 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT--CSTTCE--------------EETTTTEEEEEE--EEEBTTSCEEEEEEEEECS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc--CCCCCC--------------CCCccceeeEEE--EEEeCCCcEEEEEEEecCC
Confidence 4567999999999999999999951 111100 001112221111 1111 11 6799999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHH-HHHHHH---cCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
+.++.......++.+|++|+|+|++++...+.... +..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred chhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99888778888999999999999998765444422 233333 3789999999999864
No 141
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=6.1e-15 Score=145.75 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTP 163 (777)
+..+..+|+++|..|+|||||+++|+. +.... .+.+ . +... ...+.+++ ..+.+||||
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~--~~~~~-----------~~~~---t-~~~~---~~~~~~~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLT--GTYVQ-----------EESP---E-GGRF---KKEIVVDGQSYLLLIRDEG 75 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHH--SSCCC-----------CCCT---T-CEEE---EEEEEETTEEEEEEEEECS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CcCC---C-cceE---EEEEEECCEEEEEEEEECC
Confidence 345667999999999999999999972 21110 0000 0 0111 12333444 567889999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
|+.+|. +++.+|++++|+|+++....+. ..++..+.. .++|+++|.||+|+..
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999876 7889999999999998665444 334445544 4789999999999853
No 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.62 E-value=1.3e-15 Score=153.70 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+.. .... . ... +. +.... ....+......+.||||||+.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~--~~~~--~-~~~-t~----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPT--D-YIP-TV----------FDNFS-ANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS--CCCS--S-CCC-SS----------CCCEE-EEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCc--c-CCC-cc----------ceeEE-EEEEECCEEEEEEEEECCCcHH
Confidence 45679999999999999999999732 1110 0 000 10 11110 1111222336899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
|......+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 988888889999999999999986544333 344455544 8999999999998653
No 143
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=2.6e-15 Score=172.01 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=85.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+|+|.+|+|||||+++|+... .. . ...|+......+.+++..++||||||+.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~---~----------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ--SV---T----------------TIPTVGFNVETVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS--CC---C----------------CCCCSSEEEEEEESSSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC--CC---C----------------cCCccceeEEEEEeCCEEEEEEECCCcHH
Confidence 456899999999999999999997321 10 0 00134444556777889999999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH----cCCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iiviNKiD~~~~ 222 (777)
|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9888888999999999999999865433322 3333322 48999999999998653
No 144
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=6.6e-15 Score=146.62 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+++|+... ... ++. ...+... .....+......+.+|||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~-----------~~~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR--FIW-----------EYD---PTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC--CCS-----------CCC---TTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCc-----------ccC---CCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 456799999999999999999997321 100 000 0011111 11112222346799999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|+++...... ...+..+. ..++|+++|+||+|+..
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 6778888999999999999997432221 22223332 35899999999999864
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=1.4e-15 Score=172.25 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCc-chH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-DFT 169 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~-df~ 169 (777)
.+|+|+|.+|+|||||+|+|+.....+ .....|+|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~-----------------vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI-----------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC-----------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc-----------------cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 689999999999999999997432110 11124567777677778889999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 170 --------~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.....+++.+|++|+|+|++++...+..++++.+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3467789999999999999998887777777665 4799999999999864
No 146
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=154.95 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
+...+|+|+|++|+|||||+++|+...... +....++.......+.+.+ ..+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM------------------DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------------CCSEEEEEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC------------------CCCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 556899999999999999999997321100 0011122222223344444 68999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc---CCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|+++........ ++..+... ++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 998887888899999999999999865544332 33444433 789999999999864
No 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=149.46 Aligned_cols=117 Identities=13% Similarity=-0.014 Sum_probs=78.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG 164 (777)
..+..+|+++|+.|+|||||+++|+.. .... + ..+++.......+.+++ ..+.+|||||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~--~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN--GYPT-----------E------YIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------------------------CCSSEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC--CCCC-----------C------CCCcccceeEEEEEECCEEEEEEEEECCC
Confidence 355679999999999999999999721 1100 0 00111111112233444 4677999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
+.+|......+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 998877777788999999999999986544443 233444443 8999999999998753
No 148
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=3.2e-15 Score=150.44 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=78.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|.+|+|||||+++|+...- ... + ....+.+.. ..+..++ ..+.||||||+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~-----------~---~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEF--PEV-----------Y---VPTVFENYV---ADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--C---------------------CCEEE---EEEEETTEEEEEEEEECTTCT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCC--CCc-----------C---CCcccceEE---EEEEECCEEEEEEEEECCCcH
Confidence 356999999999999999999973211 000 0 000111111 1123333 578999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
+|......+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 988777788899999999999997543332 2344555544 8999999999998654
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=145.67 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=75.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
....+|+++|.+|+|||||+++|....+... ...+++.+.....+.+++ ..+.+|||||+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~ 82 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA------------------HEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG------------------GTTTSCTTEEEEEEEETTEEEEEEEECCCCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc------------------CCCCcccceEEEEEEECCEEEEEEEEecCCC
Confidence 4567999999999999999999941111000 011112111222233333 56789999999
Q ss_pred cchHH-HHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 166 VDFTL-EVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~-~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
.++.. ....+++.+|++|+|+|+++...... ...+..+.. .++|+++|.||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred ccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 88765 45667889999999999987543222 233333433 3799999999999864
No 150
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=3.4e-15 Score=149.51 Aligned_cols=115 Identities=14% Similarity=-0.004 Sum_probs=79.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~ 166 (777)
...+|+++|.+|+|||||+++|........ ... +. +.... ..+.++ ...+.+|||||+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~-t~----------~~~~~---~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-----YVP-TV----------FENYI---ADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS-----CCC-SS----------CCCCE---EEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc-----cCC-cc----------cceEE---EEEEECCEEEEEEEEECCCch
Confidence 457999999999999999999973211100 000 00 11110 112233 3579999999999
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
+|......+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9887778888999999999999975433332 344555554 8999999999998754
No 151
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.60 E-value=4.9e-15 Score=146.08 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC-----
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----- 165 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~----- 165 (777)
.+|+++|++|+|||||+++|+.. ... ....+|+|...... .+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~---~~~---------------~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK---KVR---------------RGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC---CCS---------------SSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCc---CCc---------------cCCCCCccceeEEE--ecC--CEEEEECCCcccccc
Confidence 58999999999999999999621 100 11123444333322 222 6899999994
Q ss_pred ------cchHHHHHHHHHh----cCeEEEEEeCCCC-----------CchHHHHHHHHHHHcCCCEEEEEEccCCCCcc
Q 004038 166 ------VDFTLEVERALRV----LDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 166 ------~df~~~~~~~l~~----aD~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~ 223 (777)
..|......+++. +++++.|+|+... ...++.+++..+...++|+++|+||+|+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 3444455555554 4566777776532 12233445566667799999999999987654
No 152
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.59 E-value=8.7e-17 Score=160.83 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
++..+|+++|++|+|||||+++|+ +.. ...+...+++.+.....+.+++ ..++||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~---~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA---DDT---------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB---CCC---------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh---cCC---------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 456899999999999999999985 110 0111122333344444455555 67999999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHHc---CCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY---GVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~iiviNKiD~~~ 221 (777)
.+|...+..+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 998887888899999999999999865543333 33444433 789999999999864
No 153
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.59 E-value=1.9e-15 Score=151.25 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec----CeEEEEEeCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTP 163 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~----~~~i~liDTP 163 (777)
.+..+|+++|++|+|||||+++|+........ +....+..+.....+.++ ...+.|||||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK----------------DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC----------------CCCCccceEEEEEEEEECCcccEEEEEEEECC
Confidence 34579999999999999999999622001000 000111112223334444 4689999999
Q ss_pred CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHH-HHHHHHHHH------cCCCEEEEEEccCCCC
Q 004038 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 164 G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~-~~~~~~~~~------~~~p~iiviNKiD~~~ 221 (777)
|+.+|......+++.+|++|+|+|++++..... ..++..+.. .++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999998888888999999999999998654333 333444443 4789999999999864
No 154
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.58 E-value=1.3e-14 Score=147.63 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
+..+|+|+|..|+|||||+++++. +.... ++. ..-|................+.||||+|+.+|
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~--~~f~~-----------~~~---~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMY--DSFDN-----------TYQ---ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH--SCCC------------------------CEEEEEECSSCEEEEEEECCSCTTTC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHh--CCCCC-----------CcC---CccceEEEEEEEEecceEEEEEEEECCCchhh
Confidence 345899999999999999999972 21110 000 00111111111122223467889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHH---HcCCCEEEEEEccCCCC
Q 004038 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 169 ~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~iiviNKiD~~~ 221 (777)
......+++.+|++++|+|.++....... ..+..+. ..++|+++|.||+|+..
T Consensus 76 ~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 76 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 99999999999999999999975443332 2333333 24789999999999764
No 155
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=6.6e-16 Score=159.43 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=84.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~ 165 (777)
+....++|+++|++|+|||||+|+|+ |..... ......++|.......+.+.+..++||||||+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~---g~~~~~-------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~ 88 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSIL---GRKVFH-------------SGTAAKSITKKCEKRSSSWKETELVVVDTPGI 88 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHH---TSCCSC-------------C-------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHc---CCCcCc-------------cCCCCCceeeeEEEEEEEeCCceEEEEECCCc
Confidence 44567899999999999999999997 211100 00112256666777778889999999999998
Q ss_pred cch-------HHHHHHHH----HhcCeEEEEEeCCCCCchHHHHHHHHHH-----HcCCCEEEEEEccCCCCcc-hH---
Q 004038 166 VDF-------TLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLGAN-FF--- 225 (777)
Q Consensus 166 ~df-------~~~~~~~l----~~aD~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~iiviNKiD~~~~~-~~--- 225 (777)
.+. ..++...+ +.+|++|+|+|+... ...+...+..+. ....|+++|+||+|+.... +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i 167 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL 167 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH
Confidence 753 22333333 346999999999753 334444444432 2456999999999987542 22
Q ss_pred ----hHHHHHHHHhCCC
Q 004038 226 ----RTRDMIVTNLGAK 238 (777)
Q Consensus 226 ----~~~~~i~~~l~~~ 238 (777)
+.++++.+.++..
T Consensus 168 ~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 168 REAPEDIQDLMDIFGDR 184 (239)
T ss_dssp ---CHHHHHHHHHHSSS
T ss_pred HhchHHHHHHHHHcCCE
Confidence 2455566666654
No 156
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.58 E-value=6.1e-15 Score=149.52 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|..|+|||||+++|+... ... ++. ...+.+. .....+......+.||||||+.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~--~~~-----------~~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDC--YPE-----------TYV---PTVFENY-TACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC--CCS-----------SCC---CCSEEEE-EEEEEC--CEEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC--CCC-----------CcC---CeeeeeE-EEEEEECCEEEEEEEEECCCCHh
Confidence 456799999999999999999997321 100 000 0011111 11122333457899999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHH--HHHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQS--ETVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
|......+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 98888888999999999999998655443 2344555554 8999999999998753
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=143.05 Aligned_cols=116 Identities=18% Similarity=0.132 Sum_probs=73.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|..|+|||||+++|+... ... . +. ...+.+. .....+......+.||||||+.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~--~---------~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR--FIS--E---------YD---PNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS--CCS--C---------CC---TTCCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC--CCc--c---------cC---CCcccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 456799999999999999999997321 100 0 00 0011111 11122222346788999999988
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHH-HHHHHHH------cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK------YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~-~~~~~~~------~~~p~iiviNKiD~~~ 221 (777)
|.. +..+++.+|++|+|+|+++........ ++..+.. .++|+++|+||+|+..
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 765 367889999999999999754333322 3333333 4899999999999854
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.57 E-value=1.3e-15 Score=171.71 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
..+|+|+|++|+|||||+|+|+.....+ .....|+|.+.....+.+++..++||||||+.++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-----------------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAI-----------------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSC-----------------CSCCTTCCHHHHHHEEEETTEEEEECC--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccc-----------------ccCCCCeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 3579999999999999999997432211 01113445444445566788999999999997765
Q ss_pred HHHHH--------HHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 170 LEVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 170 ~~~~~--------~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
..+.. +++.+|++|+|+|++++...+..++++.+.. .|+++|+||+|+...
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEK 345 (462)
T ss_dssp ------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCG
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcc
Confidence 44332 4677999999999999998888888777654 799999999998754
No 159
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.56 E-value=3.8e-14 Score=138.34 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=71.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--CeEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDTPG~~ 166 (777)
+..+|+++|.+|+|||||+++|+.. .... .. .+ .+... ...+..+ ...+++|||||+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~--~~~~---~~--~t----------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG--SYQV---LE--KT----------ESEQY---KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS--CCCC---CS--SC----------SSSEE---EEEEEETTEEEEEEEEECSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--CCCC---cC--CC----------cceeE---EEEEEECCEEEEEEEEECCCCc
Confidence 4578999999999999999999732 1110 00 00 11111 1122233 3578999999998
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH-HHHHH------cCCCEEEEEEccCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRL 220 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~iiviNKiD~~ 220 (777)
+ ..+++.+|++|+|+|+++.........| +.+.. .++|+++|+||+|+.
T Consensus 66 ~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 66 D-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp C-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred h-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 7 4578899999999999986544444332 22322 378999999999985
No 160
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.56 E-value=7.3e-15 Score=144.75 Aligned_cols=117 Identities=13% Similarity=-0.020 Sum_probs=78.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|++|+|||||+++|+...- .. ++.+ ..+.... ....+......+.+|||||+.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~-----------~~~~---t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYVP---TVFENYT-ASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC--CS-----------SCCC---CSEEEEE-EEEECSSCEEEEEEEEECCSGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCCC---ccceeEE-EEEEECCEEEEEEEEECCCChh
Confidence 4567999999999999999999973211 00 0000 0011110 1112222346799999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-H-HHHHHHH--cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-T-VWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~-~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++....... . ++..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 877777788999999999999985443332 2 2344444 3789999999999864
No 161
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=9.3e-15 Score=158.55 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=80.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCcc-
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~d- 167 (777)
+.+|+++|.+|||||||+++|. +....+ ......|+......+.+.+ ..++||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~---~~~~~i---------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVS---SAKPKI---------------ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSE---EECCEE---------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHH---cCCCcc---------------ccCCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 5689999999999999999994 211111 1112345555555566664 7899999999753
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCC---CCc-hHHHHHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 168 ------FTLEVERALRVLDGAICLFDSVA---GVE-PQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 ------f~~~~~~~l~~aD~~ilVvda~~---g~~-~~~~~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
+.....+.+..+|++|+|+|+++ ... .....++..+.. .++|+++|+||+|+..
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 45667777888999999999986 222 223344455555 3789999999999864
No 162
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.55 E-value=5.5e-14 Score=150.77 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=85.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEe-cCeEEEEEeCCCCcch
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDF 168 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~df 168 (777)
..+|+++|.+|+|||||+++|+. +... ......+.|+......+.+ ++..+++|||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~--~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFS--NYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHS--CCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 46899999999999999999961 1100 1112345666666666665 5789999999999988
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH----HHHHH--cCCCEEEEEEccCCCCc
Q 004038 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 169 -----~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~----~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 44566778899999999999987665554333 22222 28999999999998763
No 163
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=1.4e-14 Score=155.55 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=56.3
Q ss_pred cCeEEEEEeCCCCcc-------------hHHHHHHHHHhcCeEEEEEeC-CCCCchHH-HHHHHHHHHcCCCEEEEEEcc
Q 004038 153 NKHRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDS-VAGVEPQS-ETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 153 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvda-~~g~~~~~-~~~~~~~~~~~~p~iiviNKi 217 (777)
.+..++||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 566788899999999999997 55655444 467777877899999999999
Q ss_pred CCCCc
Q 004038 218 DRLGA 222 (777)
Q Consensus 218 D~~~~ 222 (777)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98754
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.30 E-value=6e-16 Score=155.23 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|.+|+|||||+++|+.. .... .. . .+..+ .. .....+......+.+|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~--~~-~-~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN--AFPG--EY-I-PTVFD----------NY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 45679999999999999999999621 1100 00 0 00000 00 01111222345677999999999
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
|......+++.+|++|+|+|++++...... .++..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 988888899999999999999876544443 333444444 7999999999998653
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=2.9e-14 Score=151.81 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=85.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--eeeeec-------------------CCccccchh----hh----h
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHE-------------------GTATMDWME----QE----Q 137 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g~v~~-------------------g~~~~d~~~----~e----~ 137 (777)
....++|+++|.+|+|||||+|+|+...-.-.. .....+ |...++... .+ +
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999732211000 000001 100011110 00 0
Q ss_pred ----hcceeEeeeEEEEEec-CeEEEEEeCCCCc-------------chHHHHHHHHHhcCeEE-EEEeCCCCCchHHH-
Q 004038 138 ----ERGITITSAATTTYWN-KHRINIIDTPGHV-------------DFTLEVERALRVLDGAI-CLFDSVAGVEPQSE- 197 (777)
Q Consensus 138 ----~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~-------------df~~~~~~~l~~aD~~i-lVvda~~g~~~~~~- 197 (777)
..|++.......+... ...++||||||+. .+...+..+++.+|.+| +|+|+..+...++.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 1233222222222222 4789999999974 34556777888888777 69999998877764
Q ss_pred HHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 198 TVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 198 ~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+++.+...+.|+++|+||+|+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHHhCCCCCeEEEEEEccccCCC
Confidence 5677777779999999999998753
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=1.5e-14 Score=145.66 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=78.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
+...+|+++|.+|+|||||+++|+...- .. ++. ...+.... ....+......+.||||||+.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~-----------~~~---~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYV---PTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC--CS-----------SCC---CCSEEEEE-EEEESSSSEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CcC---CccceeEE-EEEEECCEEEEEEEEeCCCcHh
Confidence 4567999999999999999999973211 00 000 00011110 1111222346899999999998
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHH--HHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
|......+++.+|++|+|+|+++....... .++..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 877777788999999999999985443332 23344444 3789999999999864
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.52 E-value=5e-14 Score=151.90 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=80.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
.+..+|+++|.+|+|||||++++.... ... . ..+++.......+..++ ..+++|||||+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~--~~~--~---------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA--FPG--E---------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC--CCC--S---------------CCCCSEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC--CCc--c---------------cCCcccceeEEEEEECCEEEEEEEEeCCCc
Confidence 456799999999999999999997321 100 0 01111111122233344 45669999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHH--HHHHHHHc--CCCEEEEEEccCCCCc
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~iiviNKiD~~~~ 222 (777)
.+|......+++.+|++++|+|+++........ ++..+... ++|+++|+||+|+...
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999888888899999999999999865544432 33444444 8999999999998653
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.51 E-value=1.5e-13 Score=150.60 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d- 167 (777)
..+.|+|+|++|+|||||+|+|. |... ..+...+.|++.....+.+++..+.+|||||+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~---~~~~---------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLT---GLTQ---------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH---CC--------------------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHH---CCCc---------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 45679999999999999999996 3211 1112345666666677888889999999999732
Q ss_pred ----hH---HHHHHHHHhcCeEEEEEeCCCCC--c-hHHHHHHHHHHH---cCCCEEEEEEccCCCCc
Q 004038 168 ----FT---LEVERALRVLDGAICLFDSVAGV--E-PQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 168 ----f~---~~~~~~l~~aD~~ilVvda~~g~--~-~~~~~~~~~~~~---~~~p~iiviNKiD~~~~ 222 (777)
+. ..+...+..+|++++|+|++++. . .+...+.+.+.. .++|+++|.||+|+...
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 11 22344578899999999998764 2 222222333333 47899999999998753
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.50 E-value=2.1e-13 Score=138.01 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=78.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.++|+++|++|+|||||+++|+...-.. .... ... ++.. .+....+++|||||+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~--------------~~~--~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVS--------------QEP--LSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCC--------------SSC--EEET-----TGGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeee--------------cCc--eEEE-----EeeCceEEEEECCCcHH
Confidence 456899999999999999999997322100 0000 001 1111 11456899999999999
Q ss_pred hHHHHHHHHHh----cCeEEEEEeCC---CCCchHHHHHHHHHHH------cCCCEEEEEEccCCCCcc
Q 004038 168 FTLEVERALRV----LDGAICLFDSV---AGVEPQSETVWRQADK------YGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 168 f~~~~~~~l~~----aD~~ilVvda~---~g~~~~~~~~~~~~~~------~~~p~iiviNKiD~~~~~ 223 (777)
|...+..+++. +|++|+|+|++ +........+.+.+.. .++|+++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 98888888887 89999999998 3333322222233222 489999999999998654
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.48 E-value=4.7e-14 Score=139.12 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcce-eeeeecCCccccchhhhhhcceeEeeeEEEEE-----ecCeEEEEEeCCC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPG 164 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~-~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDTPG 164 (777)
.+|+++|.+|+|||||+++|. +.... .+.. ....|+.. ....+. .....+.+|||||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~---~~~~~~~~~~------------~~t~g~~~--~~~~~~~~~~~~~~~~~~i~Dt~G 65 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLM---KTKKSDLGMQ------------SATVGIDV--KDWPIQIRDKRKRDLVLNVWDFAG 65 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHT---CC-----------------------CSEEE--EEEEC---------CEEEEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHh---cCCCccCCCc------------ceeccEEe--EEeeeccccCCCCceEEEEEecCC
Confidence 479999999999999999995 21100 0000 00011111 111111 1356899999999
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCc-h-HHHHHHHHHHH--cCCCEEEEEEccCCCC
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVE-P-QSETVWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~-~-~~~~~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
+.+|......+++.+|++++|+|.+++.. . .....+..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 66 REEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 98887777778899999999999988632 1 12223333333 3789999999999864
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=4.3e-13 Score=146.92 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....+|+++|.+|+|||||+|+|. +.....+. ..+.|.......+.+.+..+.+|||||+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~---~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALT---TAKPEIAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHC---SSCCEEEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCccCC---------------CCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 456799999999999999999994 32211111 123344444455666788999999999865
Q ss_pred hH--------HHHHHH-HHhcCeEEEEEeCCCCC--chHH-HHHHHHHHH-c-CCCEEEEEEccCCCC
Q 004038 168 FT--------LEVERA-LRVLDGAICLFDSVAGV--EPQS-ETVWRQADK-Y-GVPRICFVNKMDRLG 221 (777)
Q Consensus 168 f~--------~~~~~~-l~~aD~~ilVvda~~g~--~~~~-~~~~~~~~~-~-~~p~iiviNKiD~~~ 221 (777)
+. .....+ ...+|++++|+|++.+. .... ..++..+.. . ++|+++|+||+|+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 42 112222 23589999999988653 3222 334444443 2 899999999999864
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=4.5e-13 Score=135.61 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=71.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~ 165 (777)
....+|+++|.+|+|||||+++|+....... . ++ ...|.+.. ...+.+++ ..+.+|||+|.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~---~--------~~----~~~g~d~~--~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD---S--------DC----EVLGEDTY--ERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC---C--------C-------CCTTEE--EEEEEETTEEEEEEEECCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC---C--------cC----CccceeeE--EEEEEECCeeeEEEEeecCCC
Confidence 4467999999999999999999962111100 0 00 00111111 11233334 45789999998
Q ss_pred cch-HHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCCC
Q 004038 166 VDF-TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df-~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~~ 221 (777)
... ......+++.+|++|+|+|.++....... .++..+.. .++|+++|.||+|+..
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 763 22223345678999999999874332222 23333433 3799999999999853
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=3.2e-13 Score=141.41 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+|+|+..... . .....+.|.......+.+++..++||||||+.+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~-----------~------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV-----------R------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS-----------C------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc-----------c------cCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 35689999999999999999999732110 0 111245566667777888999999999999988
Q ss_pred hHHH---HHHHHH------hcCeEEEEEeCCC-CCchHHHHHHHHHHHc-C----CCEEEEEEccCCC
Q 004038 168 FTLE---VERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRL 220 (777)
Q Consensus 168 f~~~---~~~~l~------~aD~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~iiviNKiD~~ 220 (777)
|... ..+.+. .+|++++|+|... ........+++.+... + .|+++|+||+|+.
T Consensus 97 ~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 97 AGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 7432 333333 7899999988764 3455555666666553 2 4899999999985
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.45 E-value=2.3e-13 Score=157.14 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=80.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeee------EE--EEEecCeEEE
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA------AT--TTYWNKHRIN 158 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~------~~--~~~~~~~~i~ 158 (777)
..+..+|+++|.+|+|||||+++|.... ... . .....|.++... .. .....+..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~--~------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDP--K------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCC--C------------CCCccceEEEEeccccccceeecCCCceEEEE
Confidence 4566899999999999999999996211 000 0 000011111110 00 0012357899
Q ss_pred EEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcC--CCEEEEEEccCCCC
Q 004038 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (777)
Q Consensus 159 liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~iiviNKiD~~~ 221 (777)
+|||||+..|.......++.+|++|+|+|++.. .....++..+...+ +|+++|+||+|+..
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 999999998888778889999999999999875 44555666777655 99999999999864
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=7.8e-13 Score=132.84 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG 164 (777)
.+..+..+|+++|++|+|||||+++|+ |.... . ......|.|.... .+.+.+ .+.+|||||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~---g~~~~-~------------~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G 81 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT---NQKSL-A------------RTSKTPGRTQLIN--LFEVAD-GKRLVDLPG 81 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC---CC--------------------------CCEE--EEEEET-TEEEEECCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh---CCCcc-c------------cccCCCccceeeE--EEEecC-CEEEEECcC
Confidence 344566799999999999999999994 32200 0 0111234443322 223333 688999999
Q ss_pred Ccc----------hHHHHHHHH---HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 165 HVD----------FTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 165 ~~d----------f~~~~~~~l---~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+.+ |...+..++ +.+|++++|+|+..+.......+.+.+...++|.+++.||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 853 222233333 468999999999998777666777777788999999999999865
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.44 E-value=7.7e-13 Score=156.69 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=55.9
Q ss_pred eEEEEEeCCCCcc---hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHH-HHHHcCCCEEEEEEccCCCC
Q 004038 155 HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 155 ~~i~liDTPG~~d---f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~-~~~~~~~p~iiviNKiD~~~ 221 (777)
..++||||||+.+ ....+..+++.+|++|+|+|++.+....+...|. .+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4699999999765 4456778899999999999999998888877775 45567899999999999864
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.43 E-value=1.2e-12 Score=137.69 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|++|+|||||+|+|+... ... .....+.|.......+.+++..++||||||+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~--~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGER--VVS---------------ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSC--CSC---------------CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCC--ccc---------------ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 346799999999999999999997211 100 011134444455556677889999999999987
Q ss_pred hH---HHHHHHHH------hcCeEEEEEeCCC-CCchHHHHHHHHHHHc-C----CCEEEEEEccCCCCc
Q 004038 168 FT---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 222 (777)
Q Consensus 168 f~---~~~~~~l~------~aD~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~iiviNKiD~~~~ 222 (777)
+. ......+. .+|++|+|+|... .....+..+++.+... + +|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 100 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 64 33333332 6899999988764 4555566666666543 3 699999999998643
No 178
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=2e-13 Score=149.43 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCccccc------hh---hhhhcceeEeeeEEE------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMDW------ME---QEQERGITITSAATT------ 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~~~d~------~~---~e~~~g~Ti~~~~~~------ 149 (777)
.+.++|+|+|++|+|||||+++|.... |........+++++..+. .. .....+..+......
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 567899999999999999999996442 333233333433332111 00 011123322211111
Q ss_pred ----------EEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
+.+.++.++||||||... .....+..+|.+|+|+|+..+...+... . ...++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCC
Confidence 133578999999999764 2334458999999999998765433221 1 1134699999999998
Q ss_pred CC
Q 004038 220 LG 221 (777)
Q Consensus 220 ~~ 221 (777)
..
T Consensus 230 ~~ 231 (355)
T 3p32_A 230 EH 231 (355)
T ss_dssp GG
T ss_pred cC
Confidence 64
No 179
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.40 E-value=2e-12 Score=128.62 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|.+|+|||||+++|......... ++ ...|.+.. ...+.+++ ..+.+|||+|..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-----------~~----~~~~~~~~--~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DX----EVLGEDTY--ERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------GGGCTTEE--EEEEEETTEEEEEEEECCCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc-----------cc----cccceeEE--EEEEEECCeEEEEEEEEeccCc
Confidence 3578999999999999999999733221110 00 00111111 11233344 356789999976
Q ss_pred c-hHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH----cCCCEEEEEEccCCC
Q 004038 167 D-FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRL 220 (777)
Q Consensus 167 d-f~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iiviNKiD~~ 220 (777)
. +......+++.+|++++|+|.++....... .++..+.. .++|+++|.||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp ---CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred chhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 5 222234567889999999999875433322 23333332 379999999999975
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.3e-12 Score=129.29 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+.++|+++|..|+|||||+++|+...-.. ... ....+++. .+.+..+.+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~--------------~~~~~~~~-------~~~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVV--------------SQEPLSAA-------DYDGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCCCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccc--------------cCCCceee-------eecCCeEEEEECCCCch
Confidence 566899999999999999999997321100 000 00111111 12457899999999998
Q ss_pred hHHHHHHHHHh----cCeEEEEEeCC-CCCch-HHHHHHHHHHH-------cCCCEEEEEEccCCCCcc-hHhHHHHHHH
Q 004038 168 FTLEVERALRV----LDGAICLFDSV-AGVEP-QSETVWRQADK-------YGVPRICFVNKMDRLGAN-FFRTRDMIVT 233 (777)
Q Consensus 168 f~~~~~~~l~~----aD~~ilVvda~-~g~~~-~~~~~~~~~~~-------~~~p~iiviNKiD~~~~~-~~~~~~~i~~ 233 (777)
|...+..+++. +|++|+|+|++ +.... .....+..+.. .++|+++|+||+|+.... ..+..+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 87666666665 89999999998 32111 11122222211 389999999999997643 5555555554
Q ss_pred Hh
Q 004038 234 NL 235 (777)
Q Consensus 234 ~l 235 (777)
.+
T Consensus 184 ~l 185 (193)
T 2ged_A 184 EI 185 (193)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.38 E-value=2.4e-12 Score=128.48 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCCCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTPG~~ 166 (777)
...+|+++|+.|+|||||+++|....-.. +....++.......+.+++ ..+.+|||||+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL------------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC------------------CCCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 35789999999999999999996221100 0001111222233444555 467889999998
Q ss_pred chHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
.|.......++.+|++++|+|..+....... .++..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 8876677788899999999999876543332 23333333 3688999999999853
No 182
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.35 E-value=1.4e-12 Score=132.31 Aligned_cols=124 Identities=18% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee--ecCCccccchhhhhhcceeEee-eE---EEE----------E
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITS-AA---TTT----------Y 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v--~~g~~~~d~~~~e~~~g~Ti~~-~~---~~~----------~ 151 (777)
.+.++|+++|++|+|||||+++|+.......+.+.+ +.+. ..|....+ ..|+++.. .. ..+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 457899999999999999999998765433333322 2222 12222221 12333111 10 011 3
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
+.+..+.+|||+|..+-.... ....+.+++|+|+..+... .+......++|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 356789999999942111000 0246889999999987532 2333344578999999999975
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=4.1e-13 Score=148.64 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE--------------------
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-------------------- 151 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~-------------------- 151 (777)
+|+|+|++|+|||||+|+|+ +.....+ ..+++|+........
T Consensus 2 kI~ivG~pnvGKSTL~n~L~---~~~~~~~---------------~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT---LVDVEIA---------------NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH---C-----------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCccc---------------CCCCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 79999999999999999996 2211111 112233332222111
Q ss_pred -ec---CeEEEEEeCCCCcchH-------HHHHHHHHhcCeEEEEEeCCCC
Q 004038 152 -WN---KHRINIIDTPGHVDFT-------LEVERALRVLDGAICLFDSVAG 191 (777)
Q Consensus 152 -~~---~~~i~liDTPG~~df~-------~~~~~~l~~aD~~ilVvda~~g 191 (777)
++ ...++||||||+.+.. .....+++.+|++++|+|+.++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 3579999999986532 2222456899999999999875
No 184
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=2.2e-12 Score=148.69 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=92.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccc---cchh-hhhhccee------------------Ee
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM---DWME-QEQERGIT------------------IT 144 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~---d~~~-~e~~~g~T------------------i~ 144 (777)
....++|+|+|++|+|||||+|+|+...-.....+. .++++.. ...+ .+...|.+ ..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 346789999999999999999999843211001110 1111000 0000 00000000 00
Q ss_pred eeEEEEEecC---eEEEEEeCCCCcc-----------hHHHHHHHHHhcCeEEEEEeCCC-CCchHHHHHHHHHHHcCCC
Q 004038 145 SAATTTYWNK---HRINIIDTPGHVD-----------FTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVP 209 (777)
Q Consensus 145 ~~~~~~~~~~---~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvda~~-g~~~~~~~~~~~~~~~~~p 209 (777)
..+..+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +...++..+++.+...+.|
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p 220 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK 220 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC
Confidence 1111222222 3699999999976 77788889999999999999998 6788888888888888899
Q ss_pred EEEEEEccCCCCc-chHhHHHHH
Q 004038 210 RICFVNKMDRLGA-NFFRTRDMI 231 (777)
Q Consensus 210 ~iiviNKiD~~~~-~~~~~~~~i 231 (777)
+++|+||+|+... ++.+..+.+
T Consensus 221 vilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 221 IRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEEECCCccCHHHHHHHHHHh
Confidence 9999999999853 344444444
No 185
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.6e-11 Score=134.22 Aligned_cols=137 Identities=12% Similarity=0.216 Sum_probs=96.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc-
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d- 167 (777)
...+|+|+|.||+|||||+|+|. |....+ ...+++|++.....+.+.+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt---~~~~~v---------------~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLT---GTESEA---------------AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHH---SBCCCG---------------GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHh---CCCCcc---------------cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 34689999999999999999995 432222 22357788888888999999999999999864
Q ss_pred ------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc-----CCCEEEEEEccCCCCcch----------Hh
Q 004038 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANF----------FR 226 (777)
Q Consensus 168 ------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iiviNKiD~~~~~~----------~~ 226 (777)
....+...++.+|++++|+|+.+++.. ...+...+... ..|.++++||+|+.+.+. .+
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~e 211 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGND 211 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHH
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHH
Confidence 345678889999999999999975432 22222334333 568899999999864221 23
Q ss_pred HHHHHHHHhCCCceeEEe
Q 004038 227 TRDMIVTNLGAKPLVVQL 244 (777)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~ 244 (777)
.+..+...+.....++.+
T Consensus 212 eik~il~~~~lt~kpv~~ 229 (376)
T 4a9a_A 212 EIRAVMSEYRINSAEIAF 229 (376)
T ss_dssp HHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHhcccCCCeee
Confidence 345555555555554433
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=1.1e-12 Score=143.36 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=81.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcce--eeeeecC-------------------Cccccchh--hh------h-
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEG-------------------TATMDWME--QE------Q- 137 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~--~g~v~~g-------------------~~~~d~~~--~e------~- 137 (777)
...+.|+++|.+|+|||||+|+|+...-.-.. .....++ ....++.. .+ +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44679999999999999999999622110000 0000010 00012211 01 0
Q ss_pred ---hcceeEeeeEEEEEec-CeEEEEEeCCCCcc-------------hHHHHHHHHHhc-CeEEEEEeCCCCCchHHH-H
Q 004038 138 ---ERGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVL-DGAICLFDSVAGVEPQSE-T 198 (777)
Q Consensus 138 ---~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~a-D~~ilVvda~~g~~~~~~-~ 198 (777)
..|+........+... ...++||||||..+ +...+..+++.+ |++++|+|+..++..++. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 1344333322333333 47899999999743 334455666555 466667888877776665 3
Q ss_pred HHHHHHHcCCCEEEEEEccCCCCc
Q 004038 199 VWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 199 ~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+++.+...+.|+++|+||+|+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHhCcCCCceEEEeccccccCc
Confidence 677777779999999999998753
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=1.2e-11 Score=122.78 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe--EEEEEeCCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGH 165 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDTPG~ 165 (777)
+...+|+++|..|+|||||+++|....- .. .....++.......+.+++. .+.+|||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~---~~---------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF---NL---------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCC---CC---------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC---CC---------------CCCCccceEEEEEEEEECCEEEEEEEEECCCC
Confidence 4467999999999999999999962211 00 00111222233344555554 4567999999
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHH-HHHHHHHH---cCCCEEEEEEccCCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iiviNKiD~~~ 221 (777)
..|...+...++.+|++++|+|..+....... ..+..+.. .+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 88877777788899999999999875432222 23333332 3688999999999753
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=138.95 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCe--EEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDTPG~~d 167 (777)
..+|+++|++|+|||||+++|+ +....... ..+....+..+++++......+.+.+. .+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~---~~~~~~~~------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLF---LTDLYPER------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHT---TCCC---------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHh---CCCCCCCC------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 4689999999999999999985 21111000 011111112233333333333344443 799999999955
Q ss_pred hHH-------HHH-------HHHHhc-------------CeEEEEEeC-CCCCchHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 168 FTL-------EVE-------RALRVL-------------DGAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 168 f~~-------~~~-------~~l~~a-------------D~~ilVvda-~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
+.. .+. .+++.+ |+++++|+. .+++...+..+++.+ ..++|+|+|+||+|+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADT 186 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCC
Confidence 432 111 445444 357777876 577777776666655 367999999999998
Q ss_pred CCc
Q 004038 220 LGA 222 (777)
Q Consensus 220 ~~~ 222 (777)
...
T Consensus 187 ~~~ 189 (361)
T 2qag_A 187 LTL 189 (361)
T ss_dssp SCH
T ss_pred CCH
Confidence 753
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=131.92 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=29.9
Q ss_pred hcCeEEEEEeCCCC--CchHH-HHHHHHHH----HcCCCEEEEEEccCCCC
Q 004038 178 VLDGAICLFDSVAG--VEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (777)
Q Consensus 178 ~aD~~ilVvda~~g--~~~~~-~~~~~~~~----~~~~p~iiviNKiD~~~ 221 (777)
.+|++|+|+|+++. ..... ...+..+. ..++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999985 33222 22333332 35899999999999853
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=6.7e-12 Score=147.75 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC------Ccce-e------------eee--ecCCccccchhhh----------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG------RNYK-I------------GEV--HEGTATMDWMEQE---------- 136 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g------~~~~-~------------g~v--~~g~~~~d~~~~e---------- 136 (777)
-..+.|+++|..++|||||+|+|+...- ...+ . +.+ ..+....|.....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999973210 0000 0 000 0011111111110
Q ss_pred --hhcceeEeeeEEEEEe-cCeEEEEEeCCCCcc-------------hHHHHHHHH-HhcCeEEEEEeCCCCCchHHH-H
Q 004038 137 --QERGITITSAATTTYW-NKHRINIIDTPGHVD-------------FTLEVERAL-RVLDGAICLFDSVAGVEPQSE-T 198 (777)
Q Consensus 137 --~~~g~Ti~~~~~~~~~-~~~~i~liDTPG~~d-------------f~~~~~~~l-~~aD~~ilVvda~~g~~~~~~-~ 198 (777)
...|++-......+.+ ....++||||||+.. +...+..++ ..+|++++|+|++.++..++. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1123333333333333 345799999999765 222334444 467999999999998887776 7
Q ss_pred HHHHHHHcCCCEEEEEEccCCCCc
Q 004038 199 VWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 199 ~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+++.+...+.|+++|+||+|+...
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHHhcCCCEEEEEeCcccCCc
Confidence 888888889999999999998753
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.27 E-value=2.8e-11 Score=134.24 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-eEEEEEeCCCCc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDTPG~~ 166 (777)
+....|+|+|++|||||||+++|. +....+.. ....|+......+.+.+ ..++++||||+.
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Ls---g~~~~i~~---------------~~ftTl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMT---RAHPKIAP---------------YPFTTLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHC---SSCCEECC---------------CTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHH---cCCccccC---------------cccceecceeeEEEecCcceEEEEeccccc
Confidence 344679999999999999999994 43322211 11223334444455554 789999999985
Q ss_pred c-------hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH-----cCCCEEEEEEccCCCC
Q 004038 167 D-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (777)
Q Consensus 167 d-------f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~iiviNKiD~~~ 221 (777)
+ +.....+.+..+|.++.|+|+......+.....+++.. .+.|.++|+||+|...
T Consensus 217 ~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 217 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 4 23344556677999999999971111122222223222 3689999999999864
No 192
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.27 E-value=2.9e-11 Score=129.06 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=75.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchHH-
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL- 170 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~- 170 (777)
+|+++|..|+|||||++++. .+.... . ....+.|+......+. ....+++|||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~--~~~~~~--~-------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVF--HNMQPL--D-------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHH--SCCCSG--G-------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHH--cCCCCC--c-------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 47899999999999999874 111100 0 0011223333333332 346899999999999964
Q ss_pred --HHHHHHHhcCeEEEEEeCCCCCchHHHHHH----HHHHH--cCCCEEEEEEccCCCCcc
Q 004038 171 --EVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK--YGVPRICFVNKMDRLGAN 223 (777)
Q Consensus 171 --~~~~~l~~aD~~ilVvda~~g~~~~~~~~~----~~~~~--~~~p~iiviNKiD~~~~~ 223 (777)
....+++.++++|+|+|+++. .......| ..+.. .++|+++|.||+|+...+
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 467889999999999999987 33333333 22222 478999999999997643
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.24 E-value=4.1e-11 Score=130.61 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=39.9
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
..++.+.|+||||...-. ......+|.+++|+|+..+...+... . .-...|.++|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCC
Confidence 357889999999975322 33467899999999998764322211 1 123578999999999864
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.17 E-value=1.4e-10 Score=120.81 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=77.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc--CCcceeeeeecCCccc---------cchhhhh--hcceeEeeeEE---E--
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT--GRNYKIGEVHEGTATM---------DWMEQEQ--ERGITITSAAT---T-- 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~--g~~~~~g~v~~g~~~~---------d~~~~e~--~~g~Ti~~~~~---~-- 149 (777)
.+...++++|..|+|||||+++|.... |......+.+.+...+ ++...+. .++........ .
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 456789999999999999999997543 3222233334443222 1111110 00100000000 0
Q ss_pred ----------E-E-ecCeEEEEEeCCCCcchHHH------HHHHHHhcCeEEEEEeCCCCCchHHHH-H----HHHHHHc
Q 004038 150 ----------T-Y-WNKHRINIIDTPGHVDFTLE------VERALRVLDGAICLFDSVAGVEPQSET-V----WRQADKY 206 (777)
Q Consensus 150 ----------~-~-~~~~~i~liDTPG~~df~~~------~~~~l~~aD~~ilVvda~~g~~~~~~~-~----~~~~~~~ 206 (777)
+ . ..++.+.||||||..++... +..++.. +.+|+|+|+.......... . .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 0 0 02358999999999875322 2234455 8999999998665544432 1 1223445
Q ss_pred CCCEEEEEEccCCCCc
Q 004038 207 GVPRICFVNKMDRLGA 222 (777)
Q Consensus 207 ~~p~iiviNKiD~~~~ 222 (777)
++|.++|+||+|+...
T Consensus 171 ~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 171 GATTIPALNKVDLLSE 186 (262)
T ss_dssp TSCEEEEECCGGGCCH
T ss_pred CCCeEEEEeccccccc
Confidence 8999999999998753
No 195
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=2.1e-11 Score=138.19 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=119.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecC-Cccccchh-hhhhcceeEeeeEE-------------E
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEG-TATMDWME-QEQERGITITSAAT-------------T 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g-~~~~d~~~-~e~~~g~Ti~~~~~-------------~ 149 (777)
.+.++|+|+|++|+|||||+++|.+.. |........|.. ....++.. .....++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999997543 332222222221 11112211 11223443322100 1
Q ss_pred EEecCeEEEEEeCCCCcc----hHHHHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCc
Q 004038 150 TYWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~d----f~~~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~ 222 (777)
+.+.++.++||||||... +..++.... ..+|.+++|+|+..|.. ....++.+... +|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc-
Confidence 123678999999999873 344443332 26899999999999854 33334444332 785 89999999863
Q ss_pred chHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHHHHHHHHHHHhc
Q 004038 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 302 (777)
.....+. +.+.++... .++..++. +. |+.......|-+...|. .+ ...|+|.+.+.
T Consensus 255 ~~g~~l~-~~~~~g~PI--~fig~ge~--~~---dl~~f~~~~~vsal~G~----Gd------------i~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPI--IFIGTGEH--ID---DFEPFKTQPFISKLLGM----GD------------IEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCE--EEEECSSS--TT---CEECCTHHHHHHCCCTT----TT------------TTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCe--EEeccccc--hh---hhhccCcceeeehhcCC----Cc------------HHHHHHHHHHH
Confidence 3333333 556677532 13333322 11 11111111110000110 00 24566777655
Q ss_pred ----CHHHHHHHhcCCCCCHHHHHHHHHhhhhcC
Q 004038 303 ----DDEAMESYLEGNEPDEETIKKLIRKGTIAG 332 (777)
Q Consensus 303 ----dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~ 332 (777)
+++++++|++| +++.+++...++.....+
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G 343 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 67899999988 677888888888765544
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.15 E-value=1.2e-10 Score=127.43 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=53.7
Q ss_pred CeEEEEEeCCCCcch-------------HHHHHHHHHhcCeEEEEEeCCC-C-CchHHHHHHHHHHHcCCCEEEEEEccC
Q 004038 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLFDSVA-G-VEPQSETVWRQADKYGVPRICFVNKMD 218 (777)
Q Consensus 154 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvda~~-g-~~~~~~~~~~~~~~~~~p~iiviNKiD 218 (777)
...++||||||+.++ ...+..+++.+|++|+|+|+.. . .......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998876 5667888999999999998753 2 233445566666667899999999999
Q ss_pred CCCc
Q 004038 219 RLGA 222 (777)
Q Consensus 219 ~~~~ 222 (777)
+...
T Consensus 215 l~~~ 218 (360)
T 3t34_A 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred cCCC
Confidence 8753
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=2e-09 Score=116.94 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec-----------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------------- 153 (777)
.+|+|+|.+|+|||||+|+|.... ...+. .++.|+......+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~---------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAAN---------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccC---------------CCCceECceEEEEecCCcccceeeeeeccccee
Confidence 479999999999999999996321 11111 1122222222222322
Q ss_pred CeEEEEEeCCCCcchHH-------HHHHHHHhcCeEEEEEeCCC
Q 004038 154 KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~-------~~~~~l~~aD~~ilVvda~~ 190 (777)
...++||||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25799999999987643 35667899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.91 E-value=3.3e-09 Score=114.91 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh----cCCcceeeeeecCCccc------cchh---hhhhcceeEeeeE------
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTATM------DWME---QEQERGITITSAA------ 147 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~----~g~~~~~g~v~~g~~~~------d~~~---~e~~~g~Ti~~~~------ 147 (777)
..+...|+|+|++|+|||||+++|... .|.+. +...+.++... +... .-+..+.-+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~-i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA-VLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE-EEEEcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 355678999999999999999999633 22222 11112211110 0000 0011111111000
Q ss_pred ----------EEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 148 ----------TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 148 ----------~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
..+.+.+..+.||||||..+-. ......+|.+++|+|+..+...+. +...+ ..++.++++||+
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~ 203 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKA 203 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEch
Confidence 0022357899999999986522 123578999999999875432110 00001 124778889999
Q ss_pred CCCC
Q 004038 218 DRLG 221 (777)
Q Consensus 218 D~~~ 221 (777)
|+..
T Consensus 204 Dl~~ 207 (337)
T 2qm8_A 204 DDGD 207 (337)
T ss_dssp STTC
T ss_pred hccC
Confidence 9753
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.90 E-value=1.1e-08 Score=114.06 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=116.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCCc-cccchh-hhhhcceeEeeeE-------------E
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWME-QEQERGITITSAA-------------T 148 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~~-~~d~~~-~e~~~g~Ti~~~~-------------~ 148 (777)
.+.++|+++|+.|+||||++..|.+.. |......+.+.+.. ..+... .....|+.+.... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999997543 33222222222111 111100 1122333332211 0
Q ss_pred EEEecCeEEEEEeCCCCcchHHHHHHH------HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCC
Q 004038 149 TTYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (777)
Q Consensus 149 ~~~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~ 221 (777)
.+.+.++.++||||||...+....... +...|.+++|+|+..|.. .....+.+. .++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 112257889999999987654443333 335789999999987632 222223222 23563 47999999753
Q ss_pred cchHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccccHhHHHHHHHH--HHHHHHHH
Q 004038 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI 299 (777)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~l~e~~ 299 (777)
... ...++...++..... ++...... | ...|.+ ..+.+..... ...|+|.+
T Consensus 255 -~~g-~~l~i~~~~~~Pi~~----iG~ge~v~---d-----l~~f~p-------------~~~a~~l~g~gD~~~Lie~a 307 (433)
T 2xxa_A 255 -RGG-AALSIRHITGKPIKF----LGVGEKTE---A-----LEPFHP-------------DRIASRILGMGDVLSLIEDI 307 (433)
T ss_dssp -CCT-HHHHHHHHHCCCEEE----EECSSSSS---C-----EEECCH-------------HHHHHHHHCCCTTHHHHHHH
T ss_pred -cHH-HHHHHHHHHCCCeEE----EecCCCch---h-----hhhcCh-------------HHHHHHHhCccchHHHHHHH
Confidence 332 334566666653221 11111111 1 111221 1121111111 12233332
Q ss_pred -----HhcCHHHHHHHhcCCCCCHHHHHHHHHhhhhcCcc
Q 004038 300 -----VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSF 334 (777)
Q Consensus 300 -----~~~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~ 334 (777)
.+.+++++++|++|++++.+++...+++....+.+
T Consensus 308 ~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 308 ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred HHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23468899999998889999999999987655443
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.88 E-value=3.1e-08 Score=108.14 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEE-------------------
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~------------------- 151 (777)
.+|+|+|.+|+|||||+|+|....-. ... . ++.|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~---v~~-~--------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL---AAN-Y--------------PFATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT---CSS-C--------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc---ccC-C--------------CCceeccceeeEecChHHHHHHHHHhcccccc
Confidence 47999999999999999999743210 000 0 0111111111111
Q ss_pred --ecCeEEEEEeCCCCcch-------HHHHHHHHHhcCeEEEEEeCCC
Q 004038 152 --WNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 152 --~~~~~i~liDTPG~~df-------~~~~~~~l~~aD~~ilVvda~~ 190 (777)
+.+..+.||||||+..+ .......++.+|++++|+|+.+
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23467999999999764 3567778999999999999985
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=5.6e-09 Score=115.87 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcce-eeeeecCCccccchhhhhhcceeEeeeEEEEE--ec--CeEEEEEeCCCC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTY--WN--KHRINIIDTPGH 165 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~-~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~--~~--~~~i~liDTPG~ 165 (777)
.+|+|+|++|+|||||+++|+ |.... .+ .+....+. .. |+......+. .. ...+++|||||+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~---g~~~~~~~---~~~~~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLF---LTDLYSPE---YPGPSHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHT---TCCCCCCC---CCSCC------------CCEEEEEECC------CEEEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHh---CCCCCCCC---CCCcccCC-----cc--ceeeeeEEEEEecCCcccceeeeechhh
Confidence 578999999999999999995 43221 11 01110110 00 1111111111 11 236899999999
Q ss_pred cchHH------HH--------HHHH-----------H--hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 166 VDFTL------EV--------ERAL-----------R--VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 166 ~df~~------~~--------~~~l-----------~--~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
.++.. .+ ..++ + .+|++|++++++ .++.+.+..+++.+.. ++|+|+|+||+
T Consensus 99 ~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 99 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEEST
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcc
Confidence 76531 11 1111 1 134567777766 7888888777777764 89999999999
Q ss_pred CCCC
Q 004038 218 DRLG 221 (777)
Q Consensus 218 D~~~ 221 (777)
|+..
T Consensus 178 Dll~ 181 (418)
T 2qag_C 178 DTLT 181 (418)
T ss_dssp TSSC
T ss_pred cCcc
Confidence 9864
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=8.9e-09 Score=109.73 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCC-cc-eeeeee-cCCccccchhhhhhcceeEeeeEEEEEe--cCeEEEEEeCCC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGR-NY-KIGEVH-EGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPG 164 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~-~~-~~g~v~-~g~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDTPG 164 (777)
..+|+++|+.|+|||||+++|+ |. .. ..| +. .|.... .++........+.. ....+++|||||
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~---g~~~~~~~g-i~~~g~~~~--------~t~~~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLF---LTDLYPERV-ISGAAEKIE--------RTVQIEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH---C---------------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred CEEEEEECCCCCCHHHHHHHHh---CCCccCCCC-cccCCcccC--------CcceEeeEEEEecCCCcccCcchhhhhh
Confidence 3688999999999999999985 22 11 111 10 000000 00111111111111 235789999999
Q ss_pred Cc-------chHHHHH-------HHHHhc-------------CeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEc
Q 004038 165 HV-------DFTLEVE-------RALRVL-------------DGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (777)
Q Consensus 165 ~~-------df~~~~~-------~~l~~a-------------D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNK 216 (777)
+. .|...+. .+++.+ +.++++++.+ .++.....++++.+. .++|+++|+||
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K 164 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 164 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEe
Confidence 83 3322222 344443 3366666654 468877766666554 36899999999
Q ss_pred cCCCC
Q 004038 217 MDRLG 221 (777)
Q Consensus 217 iD~~~ 221 (777)
.|+..
T Consensus 165 ~Dl~~ 169 (301)
T 2qnr_A 165 ADTLT 169 (301)
T ss_dssp GGGSC
T ss_pred CCCCC
Confidence 99864
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.80 E-value=1.5e-08 Score=102.67 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeee--eecCCccccchhhhhhcce---eEeeeE-EEE-----------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE--VHEGTATMDWMEQEQERGI---TITSAA-TTT----------- 150 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~--v~~g~~~~d~~~~e~~~g~---Ti~~~~-~~~----------- 150 (777)
.+.++|+++|++|+|||||+++|+........... .+.+ +..|....+.. |. .+.... ..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI-AKFDAERMEKH-GAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT-THHHHHHHHTT-TCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC-CCccHHHHHhc-CCcEEEecCCceEeccHHHHHHHHHH
Confidence 45789999999999999999999866432222221 2222 11222221111 11 111000 000
Q ss_pred -EecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 151 -YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 151 -~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
...+..+.++||+|....... .-...+..+.|+|+..+..... ......+.|.++|+||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccccC
Confidence 012347899999995321100 0123466788888754332211 11122468999999999975
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.74 E-value=1.7e-07 Score=104.02 Aligned_cols=214 Identities=17% Similarity=0.134 Sum_probs=102.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCc-cccchh-hhhhcceeEeeeE-------------EEE
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWME-QEQERGITITSAA-------------TTT 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~-~~d~~~-~e~~~g~Ti~~~~-------------~~~ 150 (777)
+.+.|+++|.+|+||||++..|.... |........+.... ..+... .....|+.+.... ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999996332 22211111111000 000000 0111232221110 011
Q ss_pred EecCeEEEEEeCCCCcc------hHHHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 151 YWNKHRINIIDTPGHVD------FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~d------f~~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+.++.+.+|||||... +..++....+ ..|.+++|+|+..|.. .....+.+.+.-.+..+|+||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc-c
Confidence 12468899999999644 4445444333 3499999999998633 2334444444445678999999976 3
Q ss_pred chHhHHHHHHHHhCCCceeEEeccCCCCCceeeeecccceEEEecCcCCCceeeeccc-cHhHHHH------HHHHHHHH
Q 004038 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDI-PANLQKM------AQEYRSQM 295 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~g~id~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~------~~~~~~~l 295 (777)
.....+ ++....+.... . ++.+.... ....+ |+.+.+. ...+++++
T Consensus 253 ~~G~al-s~~~~~g~Pi~--f--ig~Ge~v~----------------------dL~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 253 KGGGAL-SAVVATGATIK--F--IGTGEKID----------------------ELETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp CHHHHH-HHHHHHTCEEE--E--EECCSSSS----------------------CEEECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred cchHHH-HHHHHHCCCEE--E--EECCCChH----------------------hCccCCHHHHHHHhcCCchHHHHHHHH
Confidence 333333 33334454211 1 11111110 01112 3344432 33444455
Q ss_pred HHHHHhcC-HHHHHHHhcCC-CCCHHHHHHHHHhhhhcC
Q 004038 296 IETIVELD-DEAMESYLEGN-EPDEETIKKLIRKGTIAG 332 (777)
Q Consensus 296 ~e~~~~~d-d~l~e~~l~~~-~~~~~~~~~~l~~~~~~~ 332 (777)
-+.+.+.+ ++++++|.+|+ +++-+++...+++....+
T Consensus 306 ~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 306 KGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp HHC-------------------CCHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 55444444 67899999997 899999998888765444
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=4.9e-08 Score=107.93 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC--eEEEEEeCC
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDTP 163 (777)
....+.+++|+|++|+|||||+|.|+ |..- .|..... ...+.++......+...+ ..++++|+|
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~---G~~l------~g~~~~~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLF---NTKF------EGEPATH-----TQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHH---TSCC------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHh---Cccc------cCCcCCC-----CCccceEeeEEEEeecCccccccchhhhh
Confidence 34456789999999999999999996 3310 0100000 011222221111112112 268999999
Q ss_pred CCcchH--------------HHHHHHHHh-------------c--C-eEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEE
Q 004038 164 GHVDFT--------------LEVERALRV-------------L--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (777)
Q Consensus 164 G~~df~--------------~~~~~~l~~-------------a--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiv 213 (777)
|+.+.. ..+..++.. + | ++++|+|+.+++...+.++++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 986531 112222221 1 2 477888999999999988888876 78999999
Q ss_pred EEccCCCCc-chHhHHHHHHHHhCC
Q 004038 214 VNKMDRLGA-NFFRTRDMIVTNLGA 237 (777)
Q Consensus 214 iNKiD~~~~-~~~~~~~~i~~~l~~ 237 (777)
+||+|.... +.....+.|++.|..
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~~ 207 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELVS 207 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHBT
T ss_pred EcchhccchHHHHHHHHHHHHHHHH
Confidence 999998764 355566677765644
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.69 E-value=1.7e-09 Score=118.72 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=84.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcchH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~ 169 (777)
.++|+++|.+|+|||||+|+|+......... ......+|+|.......+ . ..++++||||..+..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~------------~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV------------ITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHH 226 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC------------CEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccc------------eeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHH
Confidence 3689999999999999999997441100000 001123455555443332 2 248999999986421
Q ss_pred -------HHHHHHH---HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc-chHhHHHHHHHHhCC
Q 004038 170 -------LEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (777)
Q Consensus 170 -------~~~~~~l---~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~-~~~~~~~~i~~~l~~ 237 (777)
.+....+ +..|.+++++|+...........++.+...+.|+++++||+|.... +.+...+.+++.+|.
T Consensus 227 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 227 QMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 2233444 6779999999995332111111133444567899999999998763 467777888888886
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.68 E-value=3.6e-09 Score=115.99 Aligned_cols=133 Identities=9% Similarity=0.130 Sum_probs=81.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-ceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch-
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~-~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df- 168 (777)
++|+++|.+|+|||||+|+|+...... ... ......+|+|.......+. ..+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~------------~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENV------------ITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC------------CEEECCC----CEEEEESS---SSCEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccc------------eecCCCCCeecceEEEEec---CCeEEEeCCCcCcHH
Confidence 589999999999999999998542111 100 0112235666655544332 23899999998642
Q ss_pred ------HHHHHHH---HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc-chHhHHHHHHHHhCCC
Q 004038 169 ------TLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGAK 238 (777)
Q Consensus 169 ------~~~~~~~---l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~-~~~~~~~~i~~~l~~~ 238 (777)
..+.... ....+..++++|+...........++.+...+.|+++|+||+|.... +.++..+.+++.+|..
T Consensus 226 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp SGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred HHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 1222222 25568899999985332211222233344567899999999998764 4667777888888863
No 208
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.66 E-value=4.3e-08 Score=105.50 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=63.2
Q ss_pred cceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC----------CC-chHHHHHHHHHHH--
Q 004038 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----------GV-EPQSETVWRQADK-- 205 (777)
Q Consensus 139 ~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~----------g~-~~~~~~~~~~~~~-- 205 (777)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .- .......|+.+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445666667777888999999999999999999999999999999999972 11 1222334444432
Q ss_pred --cCCCEEEEEEccCCCC
Q 004038 206 --YGVPRICFVNKMDRLG 221 (777)
Q Consensus 206 --~~~p~iiviNKiD~~~ 221 (777)
.++|+++|+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 4789999999999864
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.61 E-value=5.5e-08 Score=104.23 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=61.8
Q ss_pred cceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCC-------CCCc----hHHHHHHHHHHH--
Q 004038 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-------AGVE----PQSETVWRQADK-- 205 (777)
Q Consensus 139 ~g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~-------~g~~----~~~~~~~~~~~~-- 205 (777)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-. ......|+.+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344555566677788999999999999999999999999999999999765 2111 122334444432
Q ss_pred --cCCCEEEEEEccCCCC
Q 004038 206 --YGVPRICFVNKMDRLG 221 (777)
Q Consensus 206 --~~~p~iiviNKiD~~~ 221 (777)
.++|+++|+||+|+..
T Consensus 231 ~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp GGTTCEEEEEEECHHHHH
T ss_pred ccCCceEEEEEECchhhh
Confidence 4789999999999754
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.54 E-value=3.1e-07 Score=96.12 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeec-CCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch-
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~-g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df- 168 (777)
.+++++|+.|+|||||+|.|+..... ..|.+.. |... ......+++........ -...++++|+||+.+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i---~~~~~~~~i~~v~q~~~---~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKI---PKTVEIKAIGHVIEEGG---VKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCccc---CcceeeeeeEEEeecCC---CcCCceEEechhhhhhc
Confidence 48999999999999999999633211 1122211 1000 00011112221111110 1136899999998531
Q ss_pred --------HHH-----HHHHHH--------------hcCeEEEEEeCC-CCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 169 --------TLE-----VERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 169 --------~~~-----~~~~l~--------------~aD~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
..+ ....+. .+++.++++|.. +|..+.+.++++.+.+. +++|+|+||+|..
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 111 111111 248889999965 89999999999988877 9999999999988
Q ss_pred Ccc-hHhHHHHHHHHhC
Q 004038 221 GAN-FFRTRDMIVTNLG 236 (777)
Q Consensus 221 ~~~-~~~~~~~i~~~l~ 236 (777)
..+ .....+.+++.+.
T Consensus 154 t~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 154 TLEEKSEFKQRVRKELE 170 (270)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 643 4445555555443
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=104.47 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEec--------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 153 (777)
....+|+|+|.+|+|||||+|+|. +..... ...+++|+......+.+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Lt---g~~~~~---------------~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLT---NSQASA---------------ENFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHH---C----------------------------CCSEEEEECCCHHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH---CCCccc---------------cCCCccccCceeEEEEECCccceeeccccCcc
Confidence 344689999999999999999995 321111 112334444444443332
Q ss_pred ---CeEEEEEeCCCCcchHH-------HHHHHHHhcCeEEEEEeCCC
Q 004038 154 ---KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 154 ---~~~i~liDTPG~~df~~-------~~~~~l~~aD~~ilVvda~~ 190 (777)
...+++|||||+..+.. .....++.+|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 24699999999987554 56788999999999999974
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.50 E-value=1.4e-06 Score=96.35 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=69.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcce-eeeeecCCccccchhhhhhcceeEeeeEEEEEec-CeEEEEEeCCCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD 167 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~-~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDTPG~~d 167 (777)
...|+|+|++|+|||||+|.|+ |.... .|.+. .+..+..+ .++ .+... ...++++|+||+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~---Gl~~p~~GsI~-----~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR---GIGNEEEGAAK-----TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TCCTTSTTSCC-----CCC----C-CCE-------EEECSSCTTEEEEECCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHh---CCCCccCceEE-----ECCeecce-eEE-------eccccccCCeeehHhhcccc
Confidence 3489999999999999999995 43321 22221 11111000 121 11111 12589999999752
Q ss_pred h---HHHHHHH--HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCC
Q 004038 168 F---TLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (777)
Q Consensus 168 f---~~~~~~~--l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~ 220 (777)
- ..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|..
T Consensus 133 ~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 133 TNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred hHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 1 2233332 233355554 77765 47778888888888899999999999864
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=1.4e-07 Score=105.12 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCC-ccccchhh-hhhcceeEeeeE--------E---E-EE
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAA--------T---T-TY 151 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~-~~~d~~~~-e~~~g~Ti~~~~--------~---~-~~ 151 (777)
+.++|+++|.+|+||||+++.|.... |........+... ...+.... ....|+.+.... . . -.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999997542 1111111111110 00111110 011122111100 0 0 00
Q ss_pred ecCeEEEEEeCCCCcchHHHHHHHH------HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC-C-EEEEEEccCCCCcc
Q 004038 152 WNKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGV-P-RICFVNKMDRLGAN 223 (777)
Q Consensus 152 ~~~~~i~liDTPG~~df~~~~~~~l------~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~-p-~iiviNKiD~~~~~ 223 (777)
+.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+... .++ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAFK-EAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHH-TTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHHh-hcccCCeEEEEeCCCCcc-c
Confidence 2567899999999876433333322 24799999999988742 222233222 246 7 789999999753 2
Q ss_pred hHhHHHHHHHHhCCC
Q 004038 224 FFRTRDMIVTNLGAK 238 (777)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (777)
....+ ++...++..
T Consensus 254 ~g~~l-~~~~~~~~p 267 (432)
T 2v3c_C 254 GGGAL-SAVAETKAP 267 (432)
T ss_dssp THHHH-HHHHHSSCC
T ss_pred hHHHH-HHHHHHCCC
Confidence 23333 366666653
No 214
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.45 E-value=8.3e-08 Score=104.28 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=62.7
Q ss_pred ceeEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-----------chHHHHHHHHHHH---
Q 004038 140 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK--- 205 (777)
Q Consensus 140 g~Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-----------~~~~~~~~~~~~~--- 205 (777)
..|+......+.+++..+.+|||+|+..|...+..+++.+|++|+|+|.++.. .......++.+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 34555555667778899999999999999999999999999999999999732 1222334444433
Q ss_pred -cCCCEEEEEEccCCC
Q 004038 206 -YGVPRICFVNKMDRL 220 (777)
Q Consensus 206 -~~~p~iiviNKiD~~ 220 (777)
.++|+++|+||+|+.
T Consensus 258 ~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 258 FTDTSIILFLNKKDLF 273 (353)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred ccCCcEEEEEECcCch
Confidence 478999999999975
No 215
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.45 E-value=2.4e-07 Score=92.75 Aligned_cols=85 Identities=13% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEE--cCCC-
Q 004038 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (777)
Q Consensus 386 ~~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (777)
.++||++.|..++. +.|++..|||.+|++++||.|...+.+.+.+|++|+..+ +++++|.|||++++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD----VETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS----SCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC----EEeEEECCCCEEEEEEcCCCH
Confidence 36899999998876 579999999999999999999999888889999997553 67999999999999 6664
Q ss_pred -cccccceeccCCCc
Q 004038 463 -DTITGETLCDADHP 476 (777)
Q Consensus 463 -~~~~GdtL~~~~~~ 476 (777)
++..||+||+++++
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58999999987654
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=1.7e-05 Score=88.11 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCc-cccch-hhhhhcceeEeeeEE-------------EE
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-------------TT 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~-~~d~~-~~e~~~g~Ti~~~~~-------------~~ 150 (777)
+...|+++|.+|+||||++..|.... |........+.... ..+.. ......|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999996432 22211111111100 00000 011122332221100 00
Q ss_pred EecCeEEEEEeCCCCcch----HHHHH--HHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 151 YWNKHRINIIDTPGHVDF----TLEVE--RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~--~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
...++.+.||||||.... ..+.. .....+|.+++|+|+..|.. .....+.+.+.--+..+|+||+|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 113588999999996542 22222 22334699999999998633 33344444444445578999999764
No 217
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.34 E-value=2e-07 Score=101.67 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=54.2
Q ss_pred eEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-----------chHHHHHHHHHHH----c
Q 004038 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK----Y 206 (777)
Q Consensus 142 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-----------~~~~~~~~~~~~~----~ 206 (777)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-. .......|..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 444455567778899999999999999999999999999999999999731 1222334444433 3
Q ss_pred CCCEEEEEEccCCC
Q 004038 207 GVPRICFVNKMDRL 220 (777)
Q Consensus 207 ~~p~iiviNKiD~~ 220 (777)
++|+|+|+||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 78999999999975
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=1.4e-06 Score=95.73 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecC-------------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------- 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~------------- 154 (777)
.+...|+|+|++|+|||||+|+|..... .. ....+++|+......+.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~---------------~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~ 80 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL--GN---------------PANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 80 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT--TS---------------TTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc--cc---------------ccCCCceeecceeeeeeeCCcchhhhhhhcccc
Confidence 3456899999999999999999962110 01 11123344444444444433
Q ss_pred ----eEEEEEeCCCCcc-------hHHHHHHHHHhcCeEEEEEeCCC
Q 004038 155 ----HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 155 ----~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvda~~ 190 (777)
..+.+|||||... +.......++.+|.++.|+|+.+
T Consensus 81 ~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 81 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999653 45567888899999999999975
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.25 E-value=6e-06 Score=81.94 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred eEEEEE-eCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccchhhhhhcceeEeeeEE-EE------EecCeEEEE
Q 004038 91 RNIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TT------YWNKHRINI 159 (777)
Q Consensus 91 ~nI~ii-G~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~-~~------~~~~~~i~l 159 (777)
+.|+|. +..|+||||++-.|... .|...-..+.+++....++.... ..+..+-.... .+ -...+.+.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG-KAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS-CCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC-CCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 467777 67899999999988533 34333333444444444443211 11111111000 00 003578999
Q ss_pred EeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc-----CCCEEEEEEccCCCCcchHhHHHHHHHH
Q 004038 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANFFRTRDMIVTN 234 (777)
Q Consensus 160 iDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iiviNKiD~~~~~~~~~~~~i~~~ 234 (777)
||||+.. ......++..+|.+|+++...... ......++.+++. ++++.+|+|++|.......+..+.+++
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~- 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKD- 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHH-
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHH-
Confidence 9999986 356778899999999999998877 7777888888765 467789999999654333444444443
Q ss_pred hCCC
Q 004038 235 LGAK 238 (777)
Q Consensus 235 l~~~ 238 (777)
++..
T Consensus 157 ~~~~ 160 (206)
T 4dzz_A 157 TGVK 160 (206)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6654
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.08 E-value=5.3e-06 Score=87.93 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCc-cccch-hhhhhcceeEeeeE-------------EEEE
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAA-------------TTTY 151 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~-~~d~~-~~e~~~g~Ti~~~~-------------~~~~ 151 (777)
...|+++|..|+||||++..|.... |........+.... ..+.. ......|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999996432 22212222221110 00000 00111233322110 0011
Q ss_pred ecCeEEEEEeCCCCcc--hHHHHH------HHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCc
Q 004038 152 WNKHRINIIDTPGHVD--FTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (777)
Q Consensus 152 ~~~~~i~liDTPG~~d--f~~~~~------~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~ 222 (777)
+.++.+.||||||... ...... ..+..+|.+++|+|+..+ .......+.+.. .+| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 2567899999999876 432222 345578999999999865 333334444433 577 678999999753
Q ss_pred chHhHHHHHHHHhCC
Q 004038 223 NFFRTRDMIVTNLGA 237 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (777)
... ...++...++.
T Consensus 254 ~~g-~~~~~~~~~~~ 267 (297)
T 1j8m_F 254 KGG-GALSAVAATGA 267 (297)
T ss_dssp THH-HHHHHHHTTTC
T ss_pred chH-HHHHHHHHHCc
Confidence 222 23345555554
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.08 E-value=1.2e-06 Score=96.37 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=60.6
Q ss_pred eEeeeEEEEEecCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC----------CCc-hHHHHHHHHHHH----c
Q 004038 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----------GVE-PQSETVWRQADK----Y 206 (777)
Q Consensus 142 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~----------g~~-~~~~~~~~~~~~----~ 206 (777)
|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-. ......++.+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444555677788999999999999999999999999999999999997 211 122334444433 3
Q ss_pred CCCEEEEEEccCCC
Q 004038 207 GVPRICFVNKMDRL 220 (777)
Q Consensus 207 ~~p~iiviNKiD~~ 220 (777)
++|+++|.||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 68999999999974
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=3.3e-06 Score=89.81 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=51.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCC-chH-HHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQ-SETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~-~~~-~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+++||| +..|......+++.+|++|+|+|+++.. ... ...++..++..++|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8888777778899999999999999764 222 23444556667999999999999864
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.06 E-value=2.8e-06 Score=97.84 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=62.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEE---EecCeEEEEEeCCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPG 164 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~---~~~~~~i~liDTPG 164 (777)
.+...|+|+|.+|+|||||+|+|+ |..... . .+.++ ++.|........ ...+..+.|+||||
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~---g~~~~~-~--~~~tt---------~~~T~gi~~~~~~~~~~~~~~i~LiDTpG 100 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLA---GKKKGF-S--LGSTV---------QSHTKGIWMWCVPHPKKPGHILVLLDTEG 100 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHT---TCSSCS-C--CCCSS---------SCCCCSEEEEEEECSSSTTCEEEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHc---CCCCcc-c--cCCCC---------CCceeEEEEeecccccCCCceEEEecCCC
Confidence 456789999999999999999995 322111 1 01111 111111111111 12467899999999
Q ss_pred CcchHH------HHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc
Q 004038 165 HVDFTL------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206 (777)
Q Consensus 165 ~~df~~------~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~ 206 (777)
..+... ....++...-..++|+|+..++..++..++..+...
T Consensus 101 i~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 101 LGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp BCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred cCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 875322 122223332223788999999999998887776554
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.97 E-value=3.3e-05 Score=77.40 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=87.1
Q ss_pred EEEEE-eCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccccchhhhhhcceeEeee-EEEEEecCeEEEEEeCCCC-
Q 004038 92 NIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNKHRINIIDTPGH- 165 (777)
Q Consensus 92 nI~ii-G~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDTPG~- 165 (777)
.|+|+ +..|+||||++-.|... .| ..-..+.+.+....++... .+-...+-.. ...--...+.+.+||||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~-~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR-GSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH-SCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC-CCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Confidence 35554 67899999999998543 34 3233344444333333322 0000000000 0000024578999999997
Q ss_pred cchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc-CCCEEEEEEccCCCC-cchHhHHHHHHHHhCCC
Q 004038 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 238 (777)
Q Consensus 166 ~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~iiviNKiD~~~-~~~~~~~~~i~~~l~~~ 238 (777)
.. ..+..++..+|.+|+++.+...........++.+++. +.+..+|+|++|... ....+..+.+++ ++..
T Consensus 80 ~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 80 ED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp SS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred Cc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 54 3556788999999999998876566666777777773 788889999999765 334445555555 6654
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.92 E-value=1.5e-05 Score=83.77 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=44.2
Q ss_pred EEeCCCCc-chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 159 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 159 liDTPG~~-df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
+=+.|||. ....++...+..+|+++.|+||.++.......+-+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 34679997 5678899999999999999999988766543333333 5799999999999875
No 226
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.90 E-value=7.6e-06 Score=88.79 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=50.5
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCC----------CCC-chHHHHHHHHHHH----cCCCEEEEEEcc
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV----------AGV-EPQSETVWRQADK----YGVPRICFVNKM 217 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~----------~g~-~~~~~~~~~~~~~----~~~p~iiviNKi 217 (777)
+...+.+|||+|+..|...+..+++.+|++|+|+|.+ +.- .......++.+.. .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999987 111 1222334444432 478999999999
Q ss_pred CCC
Q 004038 218 DRL 220 (777)
Q Consensus 218 D~~ 220 (777)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 975
No 227
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.88 E-value=4.3e-05 Score=75.70 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=37.7
Q ss_pred EEEEEeCC------CCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH----HHHHH----cCCCEEEEEEcc-CCC
Q 004038 156 RINIIDTP------GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK----YGVPRICFVNKM-DRL 220 (777)
Q Consensus 156 ~i~liDTP------G~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~----~~~~~----~~~p~iiviNKi-D~~ 220 (777)
++..-.+| |+..+...+..++..+|++|+|||+++.-....++-+ ..+.. .++|++|+.||. |..
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34455566 6666777789999999999999999976332233322 22221 478999999996 665
Q ss_pred Cc
Q 004038 221 GA 222 (777)
Q Consensus 221 ~~ 222 (777)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 228
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.83 E-value=0.00018 Score=74.50 Aligned_cols=87 Identities=8% Similarity=-0.071 Sum_probs=61.8
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCC------Ccch-
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL------GANF- 224 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~------~~~~- 224 (777)
..+.+.|||||+..........++..+|.+|+|+.............++.+++.+++.+ +|+|++|.. ....
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 46789999999976532222333457899999999887766777778888888899987 899999842 1111
Q ss_pred -HhHHHHHHHHhCCCc
Q 004038 225 -FRTRDMIVTNLGAKP 239 (777)
Q Consensus 225 -~~~~~~i~~~l~~~~ 239 (777)
...++++.+.++...
T Consensus 207 ~~~~~~~~~~~~g~~~ 222 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGF 222 (262)
T ss_dssp CCCCHHHHHHHTTCSE
T ss_pred cccHHHHHHHHcCCCe
Confidence 234677777787643
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.79 E-value=1.7e-05 Score=83.34 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
.+..+|+++|.+|+|||||+|+|+ |.... .....+|+|.......+ +..+.++||||..+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~---~~~~~--------------~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA---KKNIA--------------KTGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH---TSCCC--------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHh---cCcee--------------ecCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 455789999999999999999996 22111 11123455655543222 45799999999864
No 230
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.68 E-value=8.2e-05 Score=76.82 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=58.0
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH------cCCCEE-EEEEccCCCCcchH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 225 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~------~~~p~i-iviNKiD~~~~~~~ 225 (777)
..+.+.+||||+.... ....++..+|.+|+|+.+..........+++.+.. .+++++ +|+|++|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4578999999997653 35667789999999999876444334444444432 256765 89999986544445
Q ss_pred hHHHHHHHHhCCC
Q 004038 226 RTRDMIVTNLGAK 238 (777)
Q Consensus 226 ~~~~~i~~~l~~~ 238 (777)
+..+.+++.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677788777754
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.67 E-value=9.3e-05 Score=86.22 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=41.6
Q ss_pred eEEEEEeCCCCcch---------HHHHHHHHHh-----cCeEEEEEeCCCCCc-hHHHHHHHHHHHcCCCEEEEEEccCC
Q 004038 155 HRINIIDTPGHVDF---------TLEVERALRV-----LDGAICLFDSVAGVE-PQSETVWRQADKYGVPRICFVNKMDR 219 (777)
Q Consensus 155 ~~i~liDTPG~~df---------~~~~~~~l~~-----aD~~ilVvda~~g~~-~~~~~~~~~~~~~~~p~iiviNKiD~ 219 (777)
-.+.|+|.||+..- ...+...++. ...+++++++..... .....+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999986531 2233333332 256677777664433 33345555555668999999999998
Q ss_pred CCc
Q 004038 220 LGA 222 (777)
Q Consensus 220 ~~~ 222 (777)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 754
No 232
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.64 E-value=0.00024 Score=74.81 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=59.5
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH------cCCCEE-EEEEccCCCCcchHh
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFFR 226 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~------~~~p~i-iviNKiD~~~~~~~~ 226 (777)
.+.+.|||||+.... ....++..+|.+|+|+.+...........++.+.. .+++++ +|+|++|........
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 231 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKS 231 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHH
Confidence 478999999997653 34567778999999999887655555555555544 367755 889999976544456
Q ss_pred HHHHHHHHhCC
Q 004038 227 TRDMIVTNLGA 237 (777)
Q Consensus 227 ~~~~i~~~l~~ 237 (777)
.++++.+.++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 67788888775
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.62 E-value=0.00015 Score=77.44 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCcc-----ccchhhhhhcceeEe-eeEEE---------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT-----MDWMEQEQERGITIT-SAATT--------- 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~-----~d~~~~e~~~g~Ti~-~~~~~--------- 149 (777)
.+...|+++|..|+||||++..|... .|........+..... ..+.......++.+- .....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 45678999999999999999998533 2211111111110000 000000002233322 11000
Q ss_pred -E---EecCeEEEEEeCCCCcchHHHHHHHHH------------hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EE
Q 004038 150 -T---YWNKHRINIIDTPGHVDFTLEVERALR------------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-IC 212 (777)
Q Consensus 150 -~---~~~~~~i~liDTPG~~df~~~~~~~l~------------~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ii 212 (777)
+ ...++.+.||||||...........+. .+|.+++|+|+..+ .......+.+. ..+++ -+
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~Gv 259 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGI 259 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEE
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEE
Confidence 0 014688999999998654322222221 26899999999865 22222222222 12444 47
Q ss_pred EEEccCCCCcchHhHHHHHHHHhCCC
Q 004038 213 FVNKMDRLGANFFRTRDMIVTNLGAK 238 (777)
Q Consensus 213 viNKiD~~~~~~~~~~~~i~~~l~~~ 238 (777)
|+||+|... ... .+.++...++..
T Consensus 260 Vltk~d~~~-~~g-~~~~~~~~~~~P 283 (320)
T 1zu4_A 260 ILTKMDSTS-KGG-IGLAIKELLNIP 283 (320)
T ss_dssp EEECGGGCS-CTT-HHHHHHHHHCCC
T ss_pred EEeCCCCCC-chh-HHHHHHHHHCcC
Confidence 899999643 222 344555566653
No 234
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.58 E-value=0.00019 Score=73.20 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=62.5
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcchHhHHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~~~~~~~~i 231 (777)
..+.+.+||||+..+. ....++..+|.+|+|+++..........+.+.+...+++ +.+|+||++. ....+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 4678999999987653 456778999999999998755455556666777777876 5689999983 2345677
Q ss_pred HHHhCCCceeEEec
Q 004038 232 VTNLGAKPLVVQLP 245 (777)
Q Consensus 232 ~~~l~~~~~~~~~p 245 (777)
.+.++..+....+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 88887544444555
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.57 E-value=0.00022 Score=75.56 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH----cCCCEE-EEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~i-iviNKiD~~~~~~~~~ 227 (777)
..+.+.|||||+..... .+..++..+|.+|+|+++...-......+++.++. .+++++ +|+|+++.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35789999999865421 23456788999999998775444555556666664 456655 899999842 34
Q ss_pred HHHHHHHhCCCce
Q 004038 228 RDMIVTNLGAKPL 240 (777)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (777)
.+++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6667777776544
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.57 E-value=0.00011 Score=78.71 Aligned_cols=145 Identities=17% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc----CCcceeeeeecCC-ccccchh-hhhhcceeEeeeEEEE-----------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATTT----------- 150 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~----g~~~~~g~v~~g~-~~~d~~~-~e~~~g~Ti~~~~~~~----------- 150 (777)
.+...|+++|..|+|||||++.|.... |.+.-.+. +... ...+... .-+..|+.+.......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~-D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS-DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee-cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 345689999999999999999996331 11111111 0000 0000000 0122233221111000
Q ss_pred --EecCeEEEEEeCCCCcc----hHHHHHHH--HHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 151 --YWNKHRINIIDTPGHVD----FTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 151 --~~~~~~i~liDTPG~~d----f~~~~~~~--l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
...++.+.++||+|... +..+.... .-..|-.++++|+..+. +....++.+.+.--..++++||+|.. +
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a 282 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-A 282 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-S
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-c
Confidence 01345678899999743 33333222 12469999999988762 33344444443223347889999963 3
Q ss_pred chHhHHHHHHHHhCC
Q 004038 223 NFFRTRDMIVTNLGA 237 (777)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (777)
..... -++...++.
T Consensus 283 ~~G~~-l~~~~~~~~ 296 (328)
T 3e70_C 283 RGGAA-LSISYVIDA 296 (328)
T ss_dssp CCHHH-HHHHHHHTC
T ss_pred chhHH-HHHHHHHCC
Confidence 32222 234444554
No 237
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.57 E-value=0.00016 Score=78.98 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=41.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 156 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+.-+|+| +.+|........+.+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+...
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 34445554 678888888888999999999999986543333332322 27899999999998753
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.57 E-value=0.00018 Score=80.57 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=72.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee--ecCCcccc----chh-hhhhcceeEeeeEEEEE---------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMD----WME-QEQERGITITSAATTTY--------- 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v--~~g~~~~d----~~~-~e~~~g~Ti~~~~~~~~--------- 151 (777)
.+...|+|+|..|+|||||++.|...... ..|.+ ..+..+.. ... ....+++.+......+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 44568999999999999999999633110 01111 11111110 000 00122332221111000
Q ss_pred ----ecCeEEEEEeCCCCcch----HHH---HHHHHHh-----cCeEEEEEeCCCCCchHHHHHHHHHHH-cCCCEEEEE
Q 004038 152 ----WNKHRINIIDTPGHVDF----TLE---VERALRV-----LDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFV 214 (777)
Q Consensus 152 ----~~~~~i~liDTPG~~df----~~~---~~~~l~~-----aD~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~iivi 214 (777)
..++.+.||||+|.... ..+ +.+.++. -+-++||+|+..|.. ....++.+.+ .++ ..+|+
T Consensus 369 ~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIl 445 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITL 445 (503)
T ss_dssp HHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEE
T ss_pred HHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEE
Confidence 14567999999997532 222 2222221 357899999987732 2233333332 333 35789
Q ss_pred EccCCCCcchHhHHHHHHHHhCC
Q 004038 215 NKMDRLGANFFRTRDMIVTNLGA 237 (777)
Q Consensus 215 NKiD~~~~~~~~~~~~i~~~l~~ 237 (777)
||+|.. ... ..+-.+...++.
T Consensus 446 TKLD~t-akg-G~~lsi~~~~~~ 466 (503)
T 2yhs_A 446 TKLDGT-AKG-GVIFSVADQFGI 466 (503)
T ss_dssp ECGGGC-SCC-THHHHHHHHHCC
T ss_pred EcCCCc-ccc-cHHHHHHHHHCC
Confidence 999963 222 234445555664
No 239
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.55 E-value=0.00032 Score=72.79 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHH----HHH---H-HcCCCEEEEEEc-cCCCCc
Q 004038 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQA---D-KYGVPRICFVNK-MDRLGA 222 (777)
Q Consensus 163 PG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~----~~~---~-~~~~p~iiviNK-iD~~~~ 222 (777)
.|+..+...+..++..+|++|+|||+++.......+-+ ..+ . ..++|++|+.|| -|..++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 36777888899999999999999999876432222211 222 1 258999999997 477654
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.49 E-value=0.00048 Score=69.70 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCcchHhHHHHHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIV 232 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~~~~~~~~~i~ 232 (777)
.+.+.+||||+... .....++..+|.+|+|+++...........++.+.+.+.+. -+|+||+|..... ..++++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 186 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAE 186 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHH
Confidence 47899999998755 56778889999999999887655556667777777777765 4789999865432 3456666
Q ss_pred HHhCCC
Q 004038 233 TNLGAK 238 (777)
Q Consensus 233 ~~l~~~ 238 (777)
+.++..
T Consensus 187 ~~~~~~ 192 (237)
T 1g3q_A 187 DVMEVP 192 (237)
T ss_dssp HHHCSC
T ss_pred HHhCcc
Confidence 777754
No 241
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.49 E-value=0.00055 Score=70.56 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=61.4
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHhHHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~~~~~i 231 (777)
..+.+.|||||+... .....++..+|.+|+|+.+...........++.+.+.+.+.+ +|+|++|..... ..++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHH
Confidence 357899999998765 567778899999999998876555566667777777776665 789999865432 456677
Q ss_pred HHHhCCC
Q 004038 232 VTNLGAK 238 (777)
Q Consensus 232 ~~~l~~~ 238 (777)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7777764
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=0.00019 Score=76.21 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHhcCeEEEEEeCCCCC-chHH-HHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 174 RALRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 174 ~~l~~aD~~ilVvda~~g~-~~~~-~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
.+++.+|.+++|+|++++. .... .+++..+...++|+++|+||+|+..
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 4789999999999999764 3332 3455666778999999999999864
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.45 E-value=0.00034 Score=77.49 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=75.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCCc-cccchh-hhhhcceeEeeeEE-----E--------E
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWME-QEQERGITITSAAT-----T--------T 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~~-~~d~~~-~e~~~g~Ti~~~~~-----~--------~ 150 (777)
+...|+++|..|+||||++..|.... |........+.... ..+... .....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999996432 21111112121110 001000 01122332222100 0 0
Q ss_pred EecCeEEEEEeCCCCcch----HHHHHH--HHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc
Q 004038 151 YWNKHRINIIDTPGHVDF----TLEVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~~--~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~ 223 (777)
...++.+.||||||.... ..+... .+...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 114678999999997543 222211 22357999999999865 222233333322 344 467899999642 2
Q ss_pred hHhHHHHHHHHhCCC
Q 004038 224 FFRTRDMIVTNLGAK 238 (777)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (777)
.. ...++...+|..
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455566653
No 244
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.42 E-value=0.00072 Score=69.95 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHc--CCCEEEEEEccCCCCcchHhHHHH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iiviNKiD~~~~~~~~~~~~ 230 (777)
..+.+.|||||+..+ .....++..+|.+|+|+.+..........+++.+... ++++.+|+|++++.. ...+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 357899999999764 4567788889999999998765555555666777666 457789999995433 22334444
Q ss_pred HHH
Q 004038 231 IVT 233 (777)
Q Consensus 231 i~~ 233 (777)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 245
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.41 E-value=5.8e-05 Score=78.46 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcc-eeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~-~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
.+|+++|.+|+|||||+|+|. |... ..+ ...|+|....... .+..+++|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~---~~~~~~~~---------------~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK---GKRASSVG---------------AQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TTCC-------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHh---cccccccC---------------CCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 589999999999999999996 2211 111 1234554443222 1347899999998753
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.37 E-value=7.9e-05 Score=77.40 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=39.6
Q ss_pred CCCCcc-hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCC
Q 004038 162 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (777)
Q Consensus 162 TPG~~d-f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~ 221 (777)
-|||.. ...++...+..+|.++.|+||.++.......+- .+ ++|.++|+||+|+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 489874 356889999999999999999987655432211 22 899999999999875
No 247
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.32 E-value=0.00033 Score=76.39 Aligned_cols=54 Identities=11% Similarity=-0.073 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH--cCCCEEEEEEccCCCCc
Q 004038 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLGA 222 (777)
Q Consensus 165 ~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~iiviNKiD~~~~ 222 (777)
..+|........+.+|++++|+|+.+... .+...+.+ .++|+++|+||+|+...
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~----~~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG----SWLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHH----HCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcc----cHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 46788888888888999999999987421 11122222 37999999999998643
No 248
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.32 E-value=0.00047 Score=70.80 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=57.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcC---------CCEEEEEEccCCCCcch
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG---------VPRICFVNKMDRLGANF 224 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~---------~p~iiviNKiD~~~~~~ 224 (777)
.+.+.+||||+... .....++..+|.+|+|+++...-......+++.+...+ ...-+|+|++|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999998654 46788889999999999987655555556666665543 45678999998532111
Q ss_pred Hh--HHHHHHHHhCCC
Q 004038 225 FR--TRDMIVTNLGAK 238 (777)
Q Consensus 225 ~~--~~~~i~~~l~~~ 238 (777)
.. .++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 11 136677777764
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.30 E-value=0.00047 Score=73.15 Aligned_cols=146 Identities=17% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc---CCcceeeeeecCC-ccccchh-hhhhcceeEeeeE-------------EE
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA-------------TT 149 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~---g~~~~~g~v~~g~-~~~d~~~-~e~~~g~Ti~~~~-------------~~ 149 (777)
.+...|+++|.+|+||||++..|.... |........+... ...+... .-...|+.+-... ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345689999999999999999996332 2111111111100 0000000 0011233221100 00
Q ss_pred EEecCeEEEEEeCCCCcchHHHHH----HHHH--------hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEc
Q 004038 150 TYWNKHRINIIDTPGHVDFTLEVE----RALR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNK 216 (777)
Q Consensus 150 ~~~~~~~i~liDTPG~~df~~~~~----~~l~--------~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNK 216 (777)
....++.+.++||||......... ...+ ..|.+++|+|+..+ .......+.+.+. .+ .-+|+||
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~-~~i~gvVlTk 258 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-VNVTGIILTK 258 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc-CCCCEEEEeC
Confidence 011457799999999754333222 1111 26889999999843 2222222333222 33 3567899
Q ss_pred cCCCCcchHhHHHHHHHHhCCC
Q 004038 217 MDRLGANFFRTRDMIVTNLGAK 238 (777)
Q Consensus 217 iD~~~~~~~~~~~~i~~~l~~~ 238 (777)
+|.. +.... +-++...++..
T Consensus 259 ~D~~-~~gG~-~l~~~~~~~~P 278 (306)
T 1vma_A 259 LDGT-AKGGI-TLAIARELGIP 278 (306)
T ss_dssp GGGC-SCTTH-HHHHHHHHCCC
T ss_pred CCCc-cchHH-HHHHHHHHCCC
Confidence 9964 33332 45566666653
No 250
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.22 E-value=0.001 Score=70.51 Aligned_cols=143 Identities=20% Similarity=0.151 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee--ecCCccc----cchhh-hhhcceeEeeeEEEE-----------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATM----DWMEQ-EQERGITITSAATTT----------- 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v--~~g~~~~----d~~~~-e~~~g~Ti~~~~~~~----------- 150 (777)
+...|+|+|+.|+|||||++.|....... .|.+ .....+. +.... ...+++.+-......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999996332111 0111 1000000 00000 011222211110000
Q ss_pred --EecCeEEEEEeCCCCcch----HHHHH---HHHH-----hcCeEEEEEeCCCCCchHHHHHHHHHH-HcCCCEEEEEE
Q 004038 151 --YWNKHRINIIDTPGHVDF----TLEVE---RALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVN 215 (777)
Q Consensus 151 --~~~~~~i~liDTPG~~df----~~~~~---~~l~-----~aD~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~iiviN 215 (777)
...+..+.++||+|..+. ..+.. .++. ..+.+++++|+..+.. ....+..+. ..++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 013456789999997532 22221 1111 2477899999987643 333333333 3344 578899
Q ss_pred ccCCCCcchHhHHHHHHHHhCCC
Q 004038 216 KMDRLGANFFRTRDMIVTNLGAK 238 (777)
Q Consensus 216 KiD~~~~~~~~~~~~i~~~l~~~ 238 (777)
|.|.. +... .+-.+...++..
T Consensus 256 h~d~~-a~gg-~~l~i~~~~~~p 276 (304)
T 1rj9_A 256 KLDGT-AKGG-VLIPIVRTLKVP 276 (304)
T ss_dssp CTTSS-CCCT-THHHHHHHHCCC
T ss_pred CCccc-cccc-HHHHHHHHHCCC
Confidence 99864 3322 334555666653
No 251
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.22 E-value=0.00021 Score=75.10 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=52.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC----CCch---H---------HHHHH---HHHHH----cC-CC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVEP---Q---------SETVW---RQADK----YG-VP 209 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~----g~~~---~---------~~~~~---~~~~~----~~-~p 209 (777)
.+.+.|||||+.. ...+..++..+|.+|+|+.+.. +... . ..+.+ +.++. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4689999999975 4667889999999999998862 2111 1 01112 33322 24 67
Q ss_pred EEEEEEccCCCC-cchHhHHHHHHH---HhCC
Q 004038 210 RICFVNKMDRLG-ANFFRTRDMIVT---NLGA 237 (777)
Q Consensus 210 ~iiviNKiD~~~-~~~~~~~~~i~~---~l~~ 237 (777)
+.+|+|++|... ....+..+.+++ .+|.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 789999999765 333444444544 3665
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.0011 Score=70.00 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=73.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeecCCccc-cch-hhhhhcceeEeeeE-----EEE--------
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATM-DWM-EQEQERGITITSAA-----TTT-------- 150 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~g~~~~-d~~-~~e~~~g~Ti~~~~-----~~~-------- 150 (777)
+...|+++|..|+||||++..|... .|........+...... ... ......|+.+-... ..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998533 22111111111111100 000 00111233222110 000
Q ss_pred EecCeEEEEEeCCCCcch----HHHHHHHH--HhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCC-EEEEEEccCCCCcc
Q 004038 151 YWNKHRINIIDTPGHVDF----TLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (777)
Q Consensus 151 ~~~~~~i~liDTPG~~df----~~~~~~~l--~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iiviNKiD~~~~~ 223 (777)
...++.+.|+||||.... ..++.... ...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 014678999999986532 22222222 247999999998854 222233333322 244 357899999653 2
Q ss_pred hHhHHHHHHHHhCCC
Q 004038 224 FFRTRDMIVTNLGAK 238 (777)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (777)
... .-++...++..
T Consensus 253 ~g~-~~~~~~~~~~p 266 (295)
T 1ls1_A 253 GGA-ALSARHVTGKP 266 (295)
T ss_dssp CHH-HHHHHHHHCCC
T ss_pred HHH-HHHHHHHHCcC
Confidence 232 33444555653
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.17 E-value=0.00066 Score=71.70 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=71.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh----cCCcceeeeeecCC-ccccchh-hhhhcceeEeeeE--EEE-----EecC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA--TTT-----YWNK 154 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~----~g~~~~~g~v~~g~-~~~d~~~-~e~~~g~Ti~~~~--~~~-----~~~~ 154 (777)
.+...|+++|..|+||||++..|... .|........+... ...+... .....|+.+.... ..+ ...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~ 182 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcC
Confidence 34578999999999999999999632 23211111111110 0000000 0111122211000 000 1256
Q ss_pred eEEEEEeCCCCcchHHHHH----HHHH--hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhHH
Q 004038 155 HRINIIDTPGHVDFTLEVE----RALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTR 228 (777)
Q Consensus 155 ~~i~liDTPG~~df~~~~~----~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~~ 228 (777)
+.+.|+||||......... ..+. ..|.+++|+|++.+.. ....+.+.+...++ .-+|+||+|... .... +
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~~-~~g~-~ 258 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDETT-SLGS-V 258 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTCS-CCHH-H
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCccc-chhH-H
Confidence 7899999999875433222 2222 2577899999987532 11222222222222 246779999753 2232 3
Q ss_pred HHHHHHhCC
Q 004038 229 DMIVTNLGA 237 (777)
Q Consensus 229 ~~i~~~l~~ 237 (777)
-++...++.
T Consensus 259 ~~~~~~~~~ 267 (296)
T 2px0_A 259 FNILAESKI 267 (296)
T ss_dssp HHHHHTCSC
T ss_pred HHHHHHHCc
Confidence 334444554
No 254
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.14 E-value=0.0019 Score=67.32 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~ 221 (777)
.+.+.|||||+.... ......+..+|.+|+|+.+...........++.+.+.+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~-~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTV-TDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTC-SHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchH-HHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 467999999997543 233445678999999999988777888888888888899887 8899999643
No 255
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.11 E-value=0.0032 Score=63.84 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=59.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCC---CEEEEEEccCCCCcchHhHHHH
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV---PRICFVNKMDRLGANFFRTRDM 230 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~---p~iiviNKiD~~~~~~~~~~~~ 230 (777)
.+.+.+||||+..+ .....++..+|.+|+|+............+++.+++.+. ..-+|+|++|..... ..++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~---~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI---TSDE 192 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS---CHHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC---CHHH
Confidence 47899999998764 355667889999999999876555666677777877763 357899999865322 2366
Q ss_pred HHHHhCCCc
Q 004038 231 IVTNLGAKP 239 (777)
Q Consensus 231 i~~~l~~~~ 239 (777)
+++.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 777787643
No 256
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.09 E-value=0.0015 Score=69.07 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=53.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCC
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~ 220 (777)
.+.+.|||||+..... ........+|.+|+|+.+...........++.+.+.+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3679999999976533 33344578999999999998888888888899988888876 889999864
No 257
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.09 E-value=0.0027 Score=56.27 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCC-ceeecceeEEeccCceeecceeecCCEEEE--cCCC-
Q 004038 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG-KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (777)
Q Consensus 387 ~~p~~~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~-~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 462 (777)
..|....|.+++.-=+ |.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+.+++|.+||.|++ .|..
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcc
Confidence 4566666666333334 8899999999999999999 333 3556666654 2477999999999998 3433
Q ss_pred cccccceec
Q 004038 463 DTITGETLC 471 (777)
Q Consensus 463 ~~~~GdtL~ 471 (777)
++..||+|.
T Consensus 104 ~I~~GdVLy 112 (116)
T 1xe1_A 104 KVKKGDVLE 112 (116)
T ss_dssp CCCTTCEEE
T ss_pred ccCCCcEEE
Confidence 577788775
No 258
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.02 E-value=0.0016 Score=68.30 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=54.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCc
Q 004038 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA 222 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~ 222 (777)
.+.+.|||||+..... ......+.+|.+|+|+.+...-.......++.+.+.+.+++ +|+||+|....
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 4679999999976532 34555677999999999998777888888899999998875 78999996543
No 259
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.01 E-value=0.0016 Score=72.35 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+.-.|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46678999999999999999999854
No 260
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.79 E-value=0.0065 Score=62.60 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=52.4
Q ss_pred CeEEEEEeCCCCcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH----cCCCE-EEEEEccCCCCcchHhH
Q 004038 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFRT 227 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-iiviNKiD~~~~~~~~~ 227 (777)
.+.+.||||||....... .......+|.+|+|+.+..........+++.+.. .+++. -+|+|+.+... ....
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHHH
Confidence 578999999996432110 1112246999999998875444444444555543 25665 57899997432 2456
Q ss_pred HHHHHHHhCCCc
Q 004038 228 RDMIVTNLGAKP 239 (777)
Q Consensus 228 ~~~i~~~l~~~~ 239 (777)
.+.+.+.++...
T Consensus 193 ~~~l~~~~~~~v 204 (269)
T 1cp2_A 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHcCCcc
Confidence 777888887653
No 261
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.61 E-value=0.0085 Score=62.59 Aligned_cols=84 Identities=10% Similarity=-0.109 Sum_probs=51.6
Q ss_pred CeEEEEEeCCCCcchHHH-HHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH----cCCCE-EEEEEccCCCCcchHhH
Q 004038 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFRT 227 (777)
Q Consensus 154 ~~~i~liDTPG~~df~~~-~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-iiviNKiD~~~~~~~~~ 227 (777)
.+.+.||||||....... .......+|.+|+|+.+...-......+++.+.. .+++. -+|+|+.+.. .....
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHHH
Confidence 578999999996421110 1112357999999998765333333344444443 36675 4788998742 23456
Q ss_pred HHHHHHHhCCCc
Q 004038 228 RDMIVTNLGAKP 239 (777)
Q Consensus 228 ~~~i~~~l~~~~ 239 (777)
.+.+.+.++...
T Consensus 196 ~~~l~~~~g~~~ 207 (289)
T 2afh_E 196 IIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHTSCE
T ss_pred HHHHHHHcCccc
Confidence 777878887653
No 262
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0096 Score=62.89 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cCCccccch-----hh-hhhcceeEeeeEEE-EE--------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQ-EQERGITITSAATT-TY-------- 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~-----~~-e~~~g~Ti~~~~~~-~~-------- 151 (777)
.+...++++|..|+|||||++.|...... ..|.+. .|..+.... .. ....++.+...... ..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 34568999999999999999999633110 011111 011111100 00 01123333222111 10
Q ss_pred -----ecCeEEEEEeCCCCcchHHHH-------HHHHH-----hcCeEEEEEeCCCCCchHHHHHHHHHH-HcCCCEEEE
Q 004038 152 -----WNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICF 213 (777)
Q Consensus 152 -----~~~~~i~liDTPG~~df~~~~-------~~~l~-----~aD~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~iiv 213 (777)
..+....++||.|...+.... ..++. ..+-+++|+|++.|...... ++.+. ..++ .+++
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~ii 252 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLI 252 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEE
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEE
Confidence 123456799999976532221 11221 24667999998877655433 23333 3454 4678
Q ss_pred EEccCCCCcchHhHHHHHHHHhCC
Q 004038 214 VNKMDRLGANFFRTRDMIVTNLGA 237 (777)
Q Consensus 214 iNKiD~~~~~~~~~~~~i~~~l~~ 237 (777)
++|+|.. +.....+ ++...++.
T Consensus 253 iThlD~~-~~~g~~l-~~~~~~~~ 274 (302)
T 3b9q_A 253 LTKLDGS-ARGGCVV-SVVEELGI 274 (302)
T ss_dssp EECCSSC-SCTHHHH-HHHHHHCC
T ss_pred EeCCCCC-CccChhe-ehHHHHCC
Confidence 8999864 3333333 33344444
No 263
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.41 E-value=0.06 Score=57.98 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=49.7
Q ss_pred cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCc----------chHhHHHHHHHHhCCCceeEEeccC
Q 004038 179 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 179 aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
.+++++|.-+..-....+++.++.+++.|+|+. +|+|++..... .+...++++.+.++..+ ...+|+.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl~ 315 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPLL 315 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 478899988877777788889999999999995 78899986532 13456777777776533 3456643
No 264
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=96.38 E-value=0.0055 Score=67.51 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=55.8
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCc-------hHHHHHHHHHHHcCCC-----EEEEEEccCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-----RICFVNKMDRL 220 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-----~iiviNKiD~~ 220 (777)
..+.+.|||||+... ..+..++..+|.+|+|+.+..-.. ....+.++.+++.+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 357899999998765 557778899999999997753211 2223344555555543 3568999883
Q ss_pred CcchHhHHHHHHHHhCCCceeEEec
Q 004038 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
...-....+.+++.+|...+...+|
T Consensus 323 ~~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 323 KRDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp CHHHHHHHHHHHHHHTTSEECCC--
T ss_pred chhHHHHHHHHHHHhhHhhhceeCC
Confidence 2223456678888888765434455
No 265
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.25 E-value=0.014 Score=63.14 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=71.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeee-cCCccccch-----hh-hhhcceeEeeeEEE-EE--------
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQ-EQERGITITSAATT-TY-------- 151 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~-----~~-e~~~g~Ti~~~~~~-~~-------- 151 (777)
.+...|+++|..|+|||||+..|...... ..|.+. .|..+.... .. ....++.+...... ..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 34568999999999999999999643110 011110 011111100 00 01123332221110 00
Q ss_pred -----ecCeEEEEEeCCCCcchHHHH-------HHHHH-----hcCeEEEEEeCCCCCchHHHHHHHHHH-HcCCCEEEE
Q 004038 152 -----WNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICF 213 (777)
Q Consensus 152 -----~~~~~i~liDTPG~~df~~~~-------~~~l~-----~aD~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~iiv 213 (777)
..+....++||.|...+.... ..++. ..+-+++|+|++.|...... .+.+. ..++ .+++
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~ii 309 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLI 309 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEE
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEE
Confidence 023456899999976532221 11111 24567999998877655433 23333 3344 4678
Q ss_pred EEccCCCCcchHhHHHHHHHHhCC
Q 004038 214 VNKMDRLGANFFRTRDMIVTNLGA 237 (777)
Q Consensus 214 iNKiD~~~~~~~~~~~~i~~~l~~ 237 (777)
++|+|.. +..-..+ .+...++.
T Consensus 310 iThlD~~-~~gG~~l-si~~~~~~ 331 (359)
T 2og2_A 310 LTKLDGS-ARGGCVV-SVVEELGI 331 (359)
T ss_dssp EESCTTC-SCTHHHH-HHHHHHCC
T ss_pred EecCccc-ccccHHH-HHHHHhCC
Confidence 9999864 3333222 34444554
No 266
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.08 E-value=0.079 Score=56.35 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=48.4
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCc----------chHhHHHHHHHHhCCCceeEEeccC
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (777)
+.+++|+-+..-....+++.++.+++.|+|+. +|+|++..... ...+.++++.+.++..+ ...+|+.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 48899988877667788889999999999995 78899976521 13456777777776533 3455643
No 267
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.07 E-value=0.019 Score=61.11 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
++++.++|+|..|||||||++.|+..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 35778999999999999999999743
No 268
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.04 E-value=0.017 Score=63.34 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=56.9
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCc-------hHHHHHHHHHHHcCCC-----EEEEEEccCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-----RICFVNKMDRL 220 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-----~iiviNKiD~~ 220 (777)
..+.+.|||||+... ..+..++..+|.+|+|+.+..-.. ....+.++.+++.+.+ ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 457899999998765 346778889999999997753211 1222344445554433 24577887742
Q ss_pred CcchHhHHHHHHHHhCCCceeEEec
Q 004038 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
..-....+.+++.+|....+..+|
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred -hhHHHHHHHHHHHhcccccceecc
Confidence 223456778888888755444444
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.92 E-value=0.0061 Score=64.46 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHhcCeEEEEEeCCCCCchHH--HHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 175 ALRVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 175 ~l~~aD~~ilVvda~~g~~~~~--~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+..+|.+++|+|+.++..... .+++..+...++|.++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5788999999999997665443 23444556689999999999998754
No 270
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=95.84 E-value=0.058 Score=52.40 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=91.3
Q ss_pred cCCceeeEEEEEee--ccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeee
Q 004038 636 AGFPVVDVRAALVD--GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 713 (777)
Q Consensus 636 ~g~pv~~v~v~l~~--~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~ 713 (777)
-+.-+.||.|.++. |-.+ --...+-.|-..+.++|+..|+.+-..|...+.|.++-..+|.|...|.+.. .|.+
T Consensus 79 ~~~~l~nv~vVVtRyfGGi~---LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~ 154 (191)
T 2cve_A 79 EAQGLDRVAVLVVRYFGGVK---LGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAE 154 (191)
T ss_dssp HHTTBCSEEEEEEEECCSSC---CHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEE
T ss_pred HHcCCCcEEEEEEEEeCCcc---cCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceec
Confidence 35668898888874 2222 2334555678888899999999999999999999999999999999999988 9998
Q ss_pred eeccCCCeEEEEEEechhhhhchHHHhhccCCceEEE
Q 004038 714 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASY 750 (777)
Q Consensus 714 ~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~ 750 (777)
.+..+ .-+.++..+|..+.-.|...|..+|+|++.+
T Consensus 155 ~~y~~-~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 155 ETYTP-EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEEET-TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEcC-CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 88754 2288899999999999999999999999754
No 271
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=95.42 E-value=0.028 Score=48.39 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=59.9
Q ss_pred EEEEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCce---eecceeEEeccCceeecceeecCCEEEE--cCCCcccc
Q 004038 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (777)
Q Consensus 392 ~~V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~ 466 (777)
|-|-.++..+..|.+|-++|.+|+++.+..+.+.+++.- -++.+|-.+ ..+|+++.+|.=|+| .+.++++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~----KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRY----KDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECS----SSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhccc----ccccceECCCcEEEEEEcCcCCCCC
Confidence 445556666788999999999999999999999988753 356666544 467999999999998 35567899
Q ss_pred ccee
Q 004038 467 GETL 470 (777)
Q Consensus 467 GdtL 470 (777)
||+|
T Consensus 85 GD~I 88 (99)
T 1d1n_A 85 GDVI 88 (99)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9987
No 272
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.39 E-value=0.0042 Score=65.75 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
-..++|+|++|+|||||+|+|+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 4589999999999999999994
No 273
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.36 E-value=0.043 Score=54.36 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=92.2
Q ss_pred CCceeeEEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHcCCeeeeeeeEEEEEecCcchhhHHHHHhcCCceeeeeec
Q 004038 637 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGD 716 (777)
Q Consensus 637 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~ 716 (777)
+.-+.||.|.++.. |-...--...+-.|-..|.++|+..|+.+-..|...+.|.|+-..+|.|...|.+..+.|.+.+.
T Consensus 92 ~~~l~nv~vVVtRy-fGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y 170 (217)
T 1vi7_A 92 GSGVGEITAVVVRY-YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDY 170 (217)
T ss_dssp HHTCCSEEEECCEE-CCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred HcCCCCEEEEEEEE-eCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEe
Confidence 44678888888741 11112344556678888889999999999999999999999999999999999999999999987
Q ss_pred cCCCeEEEEEEechhhhhchHHHhhccCCceEEE
Q 004038 717 KPGGLKVVDALVPLAEMFQYVSALRGMTKGRASY 750 (777)
Q Consensus 717 ~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~ 750 (777)
.+ .+.++..+|..+.-.|...|..+|+|++.+
T Consensus 171 ~~--~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 171 QA--FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp SS--SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred cC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 53 488899999999999999999999999754
No 274
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.28 E-value=0.15 Score=54.49 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCC---c---------chHhHHHHHHHHhCCCceeEEecc
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG---A---------NFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~---~---------~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
+.+++|.-+..-....+++.+..+.+.|+|+. +|+|++.-.. . ..++.++++.+.++...-...+|.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 47888887776666778889999999999995 7889987321 1 124567778887764222344554
Q ss_pred C
Q 004038 247 G 247 (777)
Q Consensus 247 ~ 247 (777)
.
T Consensus 303 ~ 303 (334)
T 3iqw_A 303 L 303 (334)
T ss_dssp C
T ss_pred C
Confidence 3
No 275
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.18 E-value=0.21 Score=53.17 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=46.1
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCc-----------chHhHHHHHHHHhCCCceeEEecc
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLPV 246 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~-----------~~~~~~~~i~~~l~~~~~~~~~pi 246 (777)
+.+++|+.+.......+...++.+++.|+|+. +|+|++..... ...+.++++.+.++..++ ..+|.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~ 299 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQ 299 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecC
Confidence 47888888777666778889999999999986 78999983211 123456667777754333 45564
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.81 E-value=0.011 Score=63.69 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..++|+|++|+|||||+|.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 479999999999999999996
No 277
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.80 E-value=0.026 Score=59.47 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..++++|++|+|||||+|+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 278
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.80 E-value=0.022 Score=64.03 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
....|+++|.+|+||||+..+|....+........ ...|....+ ..|. .....++|+.|...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~----~~~d~~r~~-~~g~------------~~~~~ifd~~g~~~~ 100 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE----FNVGQYRRD-MVKT------------YKSFEFFLPDNEEGL 100 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE----EEHHHHHHH-HHCS------------CCCGGGGCTTCHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE----Eecchhhhh-hccC------------CCcccccCCCCHHHH
Confidence 34689999999999999999996443211000000 000000001 0110 012346788886322
Q ss_pred --HHHH--------HHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEE
Q 004038 169 --TLEV--------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (777)
Q Consensus 169 --~~~~--------~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiv 213 (777)
.... ..++..+++.++|+|++..-..+-..+++.+++.+.+++.+
T Consensus 101 r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 101 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2222 44455578889999999875444444556677777766544
No 279
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.72 E-value=0.13 Score=59.32 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=33.1
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCC
Q 004038 181 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (777)
Q Consensus 181 ~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~ 220 (777)
.+++|+.+.......+...++.+.+.|++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6899998887667778888899999998875 789999854
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.64 E-value=0.097 Score=56.40 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHhcCeEEEEEeCCCCCch--HHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 175 ALRVLDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 175 ~l~~aD~~ilVvda~~g~~~--~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
.+.++|.+++| ||..+... ...+++..+...++|.++|+||+|+...
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc
Confidence 35778999976 55543322 1223444556789999999999998754
No 281
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.61 E-value=0.41 Score=51.32 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=46.3
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCC-c----c--------hHhHHHHHHHHhCCCceeEEec
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-A----N--------FFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~-~----~--------~~~~~~~i~~~l~~~~~~~~~p 245 (777)
+.+++|+-+..-....+.+.++.+.+.|+|+. +|+|++.-.. . . -.+.++++.+.++.. ....+|
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~-~~~~~p 310 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDY-HLVKMP 310 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTS-EEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCC-CEEEec
Confidence 57888888777666778889999999999984 7899997543 1 1 234567777777432 234456
Q ss_pred cC
Q 004038 246 VG 247 (777)
Q Consensus 246 i~ 247 (777)
+.
T Consensus 311 l~ 312 (348)
T 3io3_A 311 LL 312 (348)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 282
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.52 E-value=0.087 Score=46.96 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=57.2
Q ss_pred EEEEEeecCCCce---EEEEEEEeeeecCCCeEEeCCCCce---eecceeEEeccCceeecceeecCCEEEE--cCCC-c
Q 004038 393 LAFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-D 463 (777)
Q Consensus 393 ~V~K~~~~~~~G~---l~~~RV~sG~l~~g~~v~~~~~~~~---~ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-~ 463 (777)
-|-.++..+..|. +|-++|.+|+++.+..+.+.+++.- -++.+|-++ ..+|+++.+|.=|+| .+.+ +
T Consensus 14 eVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrf----KdDVkEV~~G~ECGi~l~~fniD 89 (120)
T 2crv_A 14 SILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHH----KDDISVIKTGMDCGLSLDEEKVE 89 (120)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESS----SSCCSEECTTCEEEEECSCTTSC
T ss_pred EEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhccc----ccccceecCCCEEEEEEccCCCC
Confidence 3444444445577 9999999999999999999887743 356666544 467999999999998 4566 7
Q ss_pred ccccceec
Q 004038 464 TITGETLC 471 (777)
Q Consensus 464 ~~~GdtL~ 471 (777)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 88999883
No 283
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.47 E-value=0.14 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+.++|+|..|+|||||+++|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999743
No 284
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.41 E-value=0.064 Score=62.02 Aligned_cols=67 Identities=6% Similarity=0.057 Sum_probs=46.5
Q ss_pred hcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCE-EEEEEccCCCCc-----------chHhHHHHHHHHhCCCceeEEec
Q 004038 178 VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 178 ~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iiviNKiD~~~~-----------~~~~~~~~i~~~l~~~~~~~~~p 245 (777)
.+|.+++|+.+.......+...++.+++.|++. -+|+|+++-... ...+.++++++.++.+ + ..+|
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-v-~~iP 566 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASR-V-ALVP 566 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCSS-E-EEEE
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCCc-E-EEcc
Confidence 458999998877666667788888899999987 578999985421 1234566677777542 2 4555
Q ss_pred c
Q 004038 246 V 246 (777)
Q Consensus 246 i 246 (777)
.
T Consensus 567 ~ 567 (589)
T 1ihu_A 567 V 567 (589)
T ss_dssp C
T ss_pred C
Confidence 3
No 285
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.40 E-value=0.19 Score=49.80 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=61.9
Q ss_pred cCeEEEEEeCCCCcch--HH--HHHHHHHhc-CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHh
Q 004038 153 NKHRINIIDTPGHVDF--TL--EVERALRVL-DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (777)
Q Consensus 153 ~~~~i~liDTPG~~df--~~--~~~~~l~~a-D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~ 226 (777)
+.+.+.+|||||...- .. .....+... +.+|+|+++..+...+....++.++..+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3578999999976431 00 112222222 45888888866555566667777777888866 789999965444566
Q ss_pred HHHHHHHHhCCCceeEEeccCC
Q 004038 227 TRDMIVTNLGAKPLVVQLPVGA 248 (777)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~ 248 (777)
..+.+++.++.... -.+|...
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~~ 207 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWLA 207 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCCT
T ss_pred HHHHHHHHcCCCEE-EECCCCc
Confidence 77888888886544 3466443
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.23 E-value=0.09 Score=58.01 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~d 167 (777)
....-|+++|.+|+||||+...|....|.. ..+.... ..+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~-----------~i~~D~~---------------------------~~~~~ 297 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV-----------HVNRDTL---------------------------GSWQR 297 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCE-----------ECCGGGS---------------------------CSHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcE-----------EEccchH---------------------------HHHHH
Confidence 445689999999999999999996333211 1110000 01112
Q ss_pred hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccC
Q 004038 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (777)
Q Consensus 168 f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD 218 (777)
....+...+.. +..+|+|+......+-....+.++..+.++.+|.-.++
T Consensus 298 ~~~~~~~~l~~--g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 298 CVSSCQAALRQ--GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 22333334433 33456888876655555666777778888766654443
No 287
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.17 E-value=0.19 Score=55.69 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcCCc---ceeeeeecCCccccc--hhhhhhcceeEeeeEEEEEe---cCeEEE
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRN---YKIGEVHEGTATMDW--MEQEQERGITITSAATTTYW---NKHRIN 158 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~---~~~g~v~~g~~~~d~--~~~e~~~g~Ti~~~~~~~~~---~~~~i~ 158 (777)
..++..|+|+|..++|||+|+|.|+...+.. .-.|..+.......+ ......+||-+-.....+.. .+..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3567889999999999999999876432110 000000000000000 11123356554443333322 235799
Q ss_pred EEeCCCCcchH-----HHHHHHHH--hcCeEEEEEeCCCCCchHHHHHHHHHH
Q 004038 159 IIDTPGHVDFT-----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQAD 204 (777)
Q Consensus 159 liDTPG~~df~-----~~~~~~l~--~aD~~ilVvda~~g~~~~~~~~~~~~~ 204 (777)
|+||.|..|-. ...+.++. .++..|+ .....+..+..+.+..+-
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~Iy--N~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEE--EEESSCCHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHhhheee--cccccCCHHHHHHHHHHH
Confidence 99999976531 12333333 4555444 444455666666655443
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.66 E-value=0.041 Score=54.19 Aligned_cols=29 Identities=7% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
+..+.+-|+|+|++|+|||||+++|+...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44556789999999999999999998543
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.65 E-value=0.031 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+.++|+|++|+|||||++.|+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999964
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.64 E-value=0.43 Score=45.74 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+...|+++|.+|+||||++..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999963
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.54 E-value=0.043 Score=52.90 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+.++|+|++|+|||||++.|+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999743
No 292
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.42 E-value=1.3 Score=44.97 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=52.3
Q ss_pred CeEEEEEeCCCCc-----ch-HHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCC-CCcchH
Q 004038 154 KHRINIIDTPGHV-----DF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDR-LGANFF 225 (777)
Q Consensus 154 ~~~i~liDTPG~~-----df-~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~-~~~~~~ 225 (777)
++.+.+||+||-. +. .....-+-....-+|+|+|+..|....+...++.+...++++. +|+||+.. .....+
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~ 205 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAA 205 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHHH
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhhh
Confidence 5679999999742 11 1112223334567899999998777777777777888899986 68899842 221223
Q ss_pred hHHHHHHHH
Q 004038 226 RTRDMIVTN 234 (777)
Q Consensus 226 ~~~~~i~~~ 234 (777)
...+.|++.
T Consensus 206 ~~~~~le~~ 214 (251)
T 3fgn_A 206 SNRSALARI 214 (251)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 345566554
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.40 E-value=0.042 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
+++|+|++|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996443
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.99 E-value=0.065 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+|+|.+|+|||||++.|.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999995
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.66 E-value=0.051 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+.++|+|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999743
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.50 E-value=0.073 Score=52.51 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+|+|++|+|||||++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999995
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.46 E-value=0.074 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
...|+|+|++|||||||++.|...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 357999999999999999999744
No 298
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.39 E-value=0.1 Score=42.87 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=54.8
Q ss_pred eEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEE
Q 004038 686 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASY 750 (777)
Q Consensus 686 ~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~ 750 (777)
....+.|+-..+|.|...|.+..+.|.+.+.. ..+.++..+|..+.-.|...|..+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~--~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ--AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE--EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc--CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 45678999999999999999999999999985 4589999999999999999999999999743
No 299
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.35 E-value=0.34 Score=49.26 Aligned_cols=29 Identities=24% Similarity=-0.033 Sum_probs=24.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
......|+++|.+|+||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999975544
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.32 E-value=0.1 Score=49.57 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+...|+|+|.+|+|||||.+.|....|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 346899999999999999999975444
No 301
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.26 E-value=0.55 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+-..++|+|++|+|||||+..|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.17 E-value=0.088 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
+...|+|+|++|+|||||++.|+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45679999999999999999997443
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.13 E-value=0.081 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+-..++|+|+.|||||||++.|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999963
No 304
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.96 E-value=0.64 Score=50.23 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=28.7
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCC
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA 190 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~ 190 (777)
..+.+.+||||... ...+...+..+|.+++|+.+..
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 45789999999544 3577788999999999987764
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.93 E-value=0.093 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999964444
No 306
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.92 E-value=0.33 Score=51.26 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=46.3
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH----cCCCEE-EEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~i-iviNKiD~~~~~~~~~ 227 (777)
+.+.+.++|+||-..... ...++..||.+|+|+.+..-.......+++.++. .+.+.. +++|+.+.. ..
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-----~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-----hH
Confidence 346789999997643221 1245778999999997653211122233333332 233443 567865432 23
Q ss_pred HHHHHHHhCCCceeEEec
Q 004038 228 RDMIVTNLGAKPLVVQLP 245 (777)
Q Consensus 228 ~~~i~~~l~~~~~~~~~p 245 (777)
++++.+.++...+ -.+|
T Consensus 236 v~~~a~~~~~~~l-g~IP 252 (314)
T 3fwy_A 236 VDRFCKETNFRRL-AHMP 252 (314)
T ss_dssp HHHHHHHHTCCEE-EEEC
T ss_pred HHHHHHHhCCeEE-EEec
Confidence 4566666765432 3444
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.89 E-value=0.092 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+...|+|+|..|+|||||++.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999996
No 308
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.82 E-value=0.079 Score=50.59 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.--++++|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3478999999999999999864
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.81 E-value=0.08 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+...++|+|+.|+|||||++.|..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999963
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.71 E-value=0.11 Score=50.83 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
+...|+|+|.+|+|||||++.|....|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3568999999999999999999755443
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.65 E-value=0.1 Score=49.10 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..|+|+|.+|+||||+.+.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
No 312
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.62 E-value=0.1 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+-..++|+|+.|||||||++.|+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45568999999999999999999743
No 313
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.53 E-value=0.095 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
..--.++++|+.|+|||||++.|..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445799999999999999999963
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.37 E-value=0.12 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
..|+|+|.+|+||||+.+.| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 47999999999999999999 55553
No 315
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.36 E-value=0.53 Score=53.00 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=57.9
Q ss_pred EEEEeecCCCceEEEEEEEeeeecCCCeEEeCCCCcee---ecceeEEeccCceeecceeecCCEEEE--cCCCcccccc
Q 004038 394 AFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE---RIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (777)
Q Consensus 394 V~K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~---ki~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gd 468 (777)
|-.+|..+..|.++-++|..|++++|..+.+.+++... +|.+|... ..+|+++..|.-|+| .+..++..||
T Consensus 413 v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~----k~~v~e~~~g~ecgi~~~~~~~~~~gd 488 (501)
T 1zo1_I 413 VRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRF----KDDVNEVRNGMECGIGVKNYNDVRTGD 488 (501)
T ss_dssp EEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEET----TEEESEEETTCCEEEEBCCCTTCCTTC
T ss_pred EEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhccc----CccccEECCCCEEEEEEcCcCCCCCCC
Confidence 44556556679999999999999999999998887533 45555443 478999999999998 4456788899
Q ss_pred eec
Q 004038 469 TLC 471 (777)
Q Consensus 469 tL~ 471 (777)
+|-
T Consensus 489 ~~~ 491 (501)
T 1zo1_I 489 VIE 491 (501)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 316
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.36 E-value=0.13 Score=52.08 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
...|+|+|.+|+|||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4589999999999999999997555654
No 317
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.35 E-value=0.13 Score=52.91 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV 123 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v 123 (777)
.--.++|+|+.|+|||||++.| .|.....|.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l---~Gl~~~~G~I 76 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLL---YRFYDAEGDI 76 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH---TTSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHH---hccCCCCeEE
Confidence 3457999999999999999999 4544333443
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.34 E-value=0.12 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
...|+|+|.+|+|||||++.|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.33 E-value=0.16 Score=49.47 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..+.+.|+|+|.+|+||||+.+.|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45567899999999999999999976555
No 320
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.18 E-value=0.13 Score=50.19 Aligned_cols=28 Identities=21% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+..+|+|+|.+|+||||+...|....|
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999975544
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.18 E-value=0.12 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+.+.|+|+|..|+|||||+++|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.10 E-value=0.14 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+.|+|+|.+|+|||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.08 E-value=0.12 Score=50.73 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
.+.+.|+|+|.+|+|||||++.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455789999999999999999997654
No 324
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.92 E-value=0.29 Score=51.74 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+.+.|.|.+|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999754
No 325
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.89 E-value=0.11 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
+--.++|+|+.|||||||++.| +|...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l---~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNII---GCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHH---hcCCC
Confidence 3457999999999999999999 45543
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.84 E-value=0.18 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+..+|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
No 327
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.84 E-value=0.11 Score=52.03 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l---~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYIL---GLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCCHHHHHHHH---hcCC
Confidence 347899999999999999999 4654
No 328
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.83 E-value=0.14 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 329
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.83 E-value=0.98 Score=46.87 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..++.+.|.+|+|||||+.+|...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 358999999999999999999644
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.83 E-value=0.67 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
...|+++|.+|+||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.75 E-value=0.18 Score=48.52 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+...|+++|.+|+||||+.+.|....|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999975444
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.72 E-value=0.16 Score=48.47 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+.++|+|+|.+|+||||+...|....|
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999975544
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.69 E-value=0.13 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
..++++|.+|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999963
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.67 E-value=0.16 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..|+|+|.+|+||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999964444
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.51 E-value=0.079 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..|+|+|.+|+|||||++.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 336
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.48 E-value=0.18 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l---~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARM---AGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCcHHHHHHHH---hCCC
Confidence 347899999999999999999 4654
No 337
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.35 E-value=0.14 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
-.++|+|+.|+|||||++.|. |...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~---Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA---GIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH---TSSC
T ss_pred EEEEEECCCCCCHHHHHHHHh---CCCC
Confidence 579999999999999999994 6543
No 338
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.26 E-value=0.98 Score=51.27 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred EEEEEEEeecCC---CceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc--C-CCcc
Q 004038 391 AGLAFKIMSDPF---VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--G-LKDT 464 (777)
Q Consensus 391 ~~~V~K~~~~~~---~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--g-l~~~ 464 (777)
.+-|-+++..+. .|.++-++|..|+++++..+.+.+++.....++|-.+. +...+|+++..|.=|+|. + ..++
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~~ 527 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIEF 527 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccCC
Confidence 445555554442 57899999999999999999999887654444444443 345789999999999984 4 5568
Q ss_pred ccccee
Q 004038 465 ITGETL 470 (777)
Q Consensus 465 ~~GdtL 470 (777)
+.||+|
T Consensus 528 ~~gd~i 533 (537)
T 3izy_P 528 KVGDAI 533 (537)
T ss_dssp SCCCEE
T ss_pred CCCCEE
Confidence 889987
No 339
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.21 E-value=0.14 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348899999999999999998553
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.20 E-value=0.16 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999974
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.18 E-value=0.2 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999754
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.17 E-value=0.23 Score=49.61 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=26.5
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 84 ~~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
.....+.+.|.|+|.+||||+|.+..|....|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 334567788999999999999999999866654
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.15 E-value=0.19 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...|+++|.+|+||||+.+.|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999975444
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.06 E-value=0.16 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999964
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.96 E-value=0.21 Score=48.08 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+.+.|+|+|.+|+||||+.+.|....|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999975544
No 346
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.95 E-value=0.14 Score=50.72 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll 111 (777)
.++|+|+.|+|||||++.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999995
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.89 E-value=0.2 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHH
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..+...|+|+|.+|+|||||++.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3556789999999999999999985
No 348
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.88 E-value=0.15 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
+--.++|+|+.|+|||||++.| +|..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l---~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCI---NFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHH---hcCC
Confidence 3457899999999999999999 4544
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.85 E-value=0.21 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+|+|.+|+|||||++.|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999996
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.84 E-value=0.2 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+...|+|.|.+|+||||+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999643
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.82 E-value=0.17 Score=49.53 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..|+|+|.+|+||||+.+.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999995
No 352
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.81 E-value=0.16 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|+|||||++.|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34479999999999999999993
No 353
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.80 E-value=0.15 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|+|||||++.|.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34578999999999999999993
No 354
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.79 E-value=0.16 Score=51.53 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.--.++|+|+.|+|||||++.| +|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l---~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLL---ERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 3457999999999999999999 46543
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.79 E-value=0.16 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
--.++|+|+.|+|||||++.|.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999994
No 356
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.78 E-value=0.21 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...|+|+|.+|+||||+...|....|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975545
No 357
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.77 E-value=0.18 Score=53.11 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+-..++|+|++|+|||||++.|+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4556899999999999999999963
No 358
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.77 E-value=0.15 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|||||||++.| +|...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l---~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNF---NGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHH---HcCCC
Confidence 347899999999999999999 46543
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.77 E-value=0.19 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999975544
No 360
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.77 E-value=0.16 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l---~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVI---TGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCCHHHHHHHH---hCCC
Confidence 347999999999999999999 4544
No 361
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.72 E-value=0.17 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
--.++|+|+.|+|||||++.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999995
No 362
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.72 E-value=0.2 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+--.++|+|++|+|||||++.|+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHH
Confidence 344589999999999999999996
No 363
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.71 E-value=0.19 Score=49.00 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+...|+|+|.+|+|||||.+.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999963
No 364
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.68 E-value=0.16 Score=50.60 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
-.++|+|+.|+|||||++.| +|...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l---~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTI---STYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999999 46543
No 365
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=89.66 E-value=0.95 Score=45.33 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=60.5
Q ss_pred cCeEEEEEeCCCCc-----chHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEE-EEEEccCCCCcchHh
Q 004038 153 NKHRINIIDTPGHV-----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (777)
Q Consensus 153 ~~~~i~liDTPG~~-----df~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-iviNKiD~~~~~~~~ 226 (777)
.++.+.+||+||.. +......-+.....-+|+|+++..+....+...++.+...++++. +|+|+++........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 35789999999732 111112222223356899999998877777777788888899976 788999865444566
Q ss_pred HHHHHHHHhCCCc
Q 004038 227 TRDMIVTNLGAKP 239 (777)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (777)
..+.+++.++...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7888888888754
No 366
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.65 E-value=0.34 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
---+.|.|++|+|||||+-.+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 347889999999999999988644
No 367
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.54 E-value=0.17 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
--.++|+|+.|+|||||++.|.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999993
No 368
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.54 E-value=0.17 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.++|+|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999863
No 369
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.53 E-value=0.24 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999975544
No 370
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=89.50 E-value=2.2 Score=43.14 Aligned_cols=83 Identities=10% Similarity=-0.094 Sum_probs=52.6
Q ss_pred cCeEEEEEeCCCCcc-----hHHHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCcchHhH
Q 004038 153 NKHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 227 (777)
Q Consensus 153 ~~~~i~liDTPG~~d-----f~~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~~~~~~ 227 (777)
..+.+.+||.+|... ......-+-....-+|+|+++..|....+...++.++..+++.=+|+|+++....-.+.+
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~~~~~~~~ 209 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSIS 209 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTCCHHHHHT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCccchhhhh
Confidence 357899999997431 111112222233458999999988767777778888888999557899998654223333
Q ss_pred HHHHHHHh
Q 004038 228 RDMIVTNL 235 (777)
Q Consensus 228 ~~~i~~~l 235 (777)
.-.+++..
T Consensus 210 ~p~le~~~ 217 (242)
T 3qxc_A 210 LPYIELFN 217 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 44444443
No 371
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.41 E-value=0.33 Score=52.92 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeee
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV 123 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v 123 (777)
.--.++|+|+.|+|||||++.|. |.....|.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~ia---Gl~~~~G~I 77 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFL---RLLNTEGEI 77 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH---TCSEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHh---CCCCCCeEE
Confidence 34578999999999999999994 655444554
No 372
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.41 E-value=0.18 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l---~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAI---AGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCCHHHHHHHH---hCCC
Confidence 347899999999999999999 4554
No 373
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.35 E-value=0.18 Score=51.87 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.+--.++|+|+.|+|||||++.| +|...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l---~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCL---NLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHH---HcCCC
Confidence 34457899999999999999999 46543
No 374
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.35 E-value=0.18 Score=53.02 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..++++|++|+|||||+|.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999994
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.30 E-value=0.25 Score=48.36 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
..+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.30 E-value=0.21 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
..|+|+|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997543
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.27 E-value=0.23 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
..+...|+|+|.+|+|||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999853
No 378
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.21 E-value=0.2 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|+|||||++.|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999995
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.20 E-value=0.2 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
--.++|+|++|+|||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.10 E-value=0.26 Score=49.85 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+...|+|+|..|+|||||++.|....|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446799999999999999999964333
No 381
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.10 E-value=0.23 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
+|+|+|.+|+||||+++.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999755553
No 382
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.10 E-value=0.2 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
+--.++|+|+.|+|||||++.| +|..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l---~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRII---STLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHH---hcCC
Confidence 3447999999999999999999 4654
No 383
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.09 E-value=0.15 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=16.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+...|+|+|.+|+|||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999996
No 384
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.09 E-value=1.2 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..+.+.|.|.+|+|||||+.++....|
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 347899999999999999999975554
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.08 E-value=0.25 Score=48.92 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..+|+|+|.+|+||||+...|....|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999976555
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.06 E-value=0.32 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+.|+|+|.+|+||||+.+.|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 387
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.05 E-value=0.17 Score=48.47 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+...++++|++|+|||||+.++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999996
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.02 E-value=0.26 Score=49.15 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+...|+|+|.+|+||||+++.|....|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999975554
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.00 E-value=0.24 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975555
No 390
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.99 E-value=0.2 Score=49.53 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
--.++|+|++|+|||||+..|+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999996
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.96 E-value=0.25 Score=48.01 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
...|+|+|.+|+||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 392
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.93 E-value=0.82 Score=46.16 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred eeeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004038 684 PIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 751 (777)
Q Consensus 684 Pi~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~ 751 (777)
--|++.|.+|.+|.+.+++.|.+- |.|..++..+++.....+.+|-----.+.+.|++.|+|.|.+.
T Consensus 183 a~m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 183 EKVRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 458899999999999999999654 7887777554355677788998766678889999999998764
No 393
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.85 E-value=1.2 Score=46.92 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
...+|.|.|.+|+|||+|+.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999644
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.84 E-value=0.3 Score=47.49 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
....|+|+|.+|+||||+.+.|....|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999975545
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.82 E-value=0.25 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
++...|+|+|.+|+||||+++.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999964
No 396
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.80 E-value=0.26 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=21.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHH
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..+...|+|+|.+|+|||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999985
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.79 E-value=0.21 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.--.++|+|+.|+|||||++.|.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34579999999999999999993
No 398
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.76 E-value=0.23 Score=47.60 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
..|+|.|.+|+||||+++.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997543
No 399
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.75 E-value=0.28 Score=47.76 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...|+|.|.+|+||||+++.|....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999975444
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.75 E-value=0.28 Score=49.91 Aligned_cols=28 Identities=18% Similarity=-0.041 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
+...|+|+|..|+|||||++.|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3458999999999999999999755454
No 401
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.74 E-value=0.21 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.018 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|+|||||++.|.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 33478999999999999999993
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.71 E-value=0.21 Score=51.62 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|+|||||++.|.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999993
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.70 E-value=0.32 Score=49.26 Aligned_cols=29 Identities=14% Similarity=-0.038 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
.+..+|+|+|.+|+||||++..|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35678999999999999999999755553
No 404
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.66 E-value=0.21 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...|+|.|.+|+||||+.+.|....|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999975544
No 405
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.50 E-value=0.22 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l---~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLL---LGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHH---TTSS
T ss_pred CCEEEEECCCCCCHHHHHHHH---hCCC
Confidence 347899999999999999999 4554
No 406
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.48 E-value=0.24 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+|+|+|.+|+||||+...|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999975544
No 407
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.45 E-value=1 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
...+++.|.|.+|+|||||+..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999963
No 408
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.43 E-value=0.28 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+|+|..|+|||||++.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999996
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.40 E-value=0.2 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
-.+++|+|.+|+|||||++.|+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999996
No 410
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.40 E-value=1.5 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+-..+.|.|.+|+|||||+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999743
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.31 E-value=0.28 Score=48.62 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...|+|+|.+|+||||+.+.|....|
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976555
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.14 E-value=0.29 Score=48.28 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
...|+|.|.+|+||||+.+.|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999995
No 413
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.07 E-value=0.31 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+.|+|+|.+|+||||+.+.|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999976555
No 414
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.04 E-value=0.24 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=22.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHH
Q 004038 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 86 ~~~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
...+...|+|+|..|+|||||++.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999985
No 415
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.01 E-value=0.31 Score=45.86 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..||+|.|.+|+||||+...|....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35999999999999999999965444
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.96 E-value=0.32 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..+|+|..|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999975443
No 417
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.80 E-value=1.7 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+|.|.|.+|+|||+|+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 418
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.78 E-value=0.35 Score=49.06 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+...|+|.|.+|+||||+.+.|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999975444
No 419
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.73 E-value=0.27 Score=52.96 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
-.|+|+|++|+|||||+++|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999996
No 420
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.59 E-value=0.28 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~ 117 (777)
--.++|+|+.|+|||||++.| +|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l---~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI---SGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred CEEEEEECCCCCCHHHHHHHH---hCCC
Confidence 347899999999999999999 4654
No 421
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.58 E-value=2.7 Score=42.81 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
....+++.|.|.+|+|||+|+.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 355689999999999999999999643
No 422
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.54 E-value=1.7 Score=43.41 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=25.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh---cCCcceeeeeec
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE 125 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~---~g~~~~~g~v~~ 125 (777)
..||.+.|.+|+||||++-++... .|.....+.+++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 468999999999999997777433 354444555544
No 423
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.47 E-value=0.27 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+--.++|+|+.|||||||++.|.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHh
Confidence 34578999999999999999994
No 424
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.47 E-value=0.26 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
....++++|.+|+|||||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999996
No 425
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.46 E-value=0.29 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
++|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999975545
No 426
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.42 E-value=0.35 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+|+|.|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975444
No 427
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.36 E-value=0.29 Score=51.07 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.+--.++|+|+.|+|||||++.| +|...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l---~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMI---MGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHH---TTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHH---hcCCC
Confidence 34457999999999999999999 46543
No 428
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.28 E-value=0.23 Score=52.95 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+++|+|++|+|||||++.|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999999995
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.24 E-value=1 Score=41.34 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..+|.|.|.+|+|||+|+.++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999995
No 430
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.22 E-value=0.36 Score=50.26 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 87 ~~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
..+...|.++|.+|+|||||+..|....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999997544
No 431
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.16 E-value=0.2 Score=52.79 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
..--.++|+|+.|+|||||++.|+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHH
Confidence 344589999999999999999984
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.13 E-value=0.33 Score=45.73 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+.|+|+|.+|+||||+.+.|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975544
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.09 E-value=0.38 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976555
No 434
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.09 E-value=0.9 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+++.|.|.+|+|||+|+..+..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999963
No 435
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.07 E-value=0.38 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999976555
No 436
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.06 E-value=1 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+---+.|.|++|+|||||+-.+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH
Confidence 3446899999999999999988644
No 437
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.98 E-value=0.38 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
No 438
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.94 E-value=0.36 Score=54.56 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+|+|+|++|||||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.83 E-value=0.43 Score=47.76 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+..+|+|+|.+|+||||+...|....|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999976555
No 440
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.70 E-value=0.32 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|+|||||++.|. |...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~ia---Gl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLA---GFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH---TSSC
T ss_pred CCEEEEECCCCchHHHHHHHHh---cCCC
Confidence 3478999999999999999994 6543
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.63 E-value=1.2 Score=46.24 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
....+|.|.|.+|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988633
No 442
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.63 E-value=0.37 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
...-.|+|+|++|+|||||++.|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445899999999999999999963
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.45 E-value=0.36 Score=46.25 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 444
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.32 E-value=1.4 Score=47.39 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
+-+.+.|.|.+|+|||||+-.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999998743
No 445
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.17 E-value=0.84 Score=51.70 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred cCeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEcc
Q 004038 179 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (777)
Q Consensus 179 aD~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKi 217 (777)
..+-++|+|++.+-..+-..+.+.+++.+.+++++--.+
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~ 155 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVC 155 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC
Confidence 356788999998877766666677777788766554333
No 446
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.16 E-value=0.35 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|+|||||++.|. |...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIA---GLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH---TSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHh---CCCC
Confidence 3478999999999999999994 6543
No 447
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.07 E-value=0.46 Score=49.24 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+...|+|+|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999996
No 448
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.04 E-value=1.3 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+-..+.|.|++|+|||||+..++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.98 E-value=0.43 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004038 92 NIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999754
No 450
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.94 E-value=0.36 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.--.++|+|+.|+|||||++.|. |...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLA---GIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH---TSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHH---CCCC
Confidence 33478999999999999999994 6543
No 451
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.94 E-value=0.51 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+++.|.|.+|+|||||+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999643
No 452
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.93 E-value=0.34 Score=52.21 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
...++|+|..|+|||||++.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999996
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.84 E-value=0.42 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
..+|+|+|.+|+||||+.+.|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999975444
No 454
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=85.84 E-value=2.2 Score=46.08 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=17.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004038 91 RNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll 111 (777)
+.+.+.|..|+||||+.-+|.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la 23 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAA 23 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHH
Confidence 456788999999999998884
No 455
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.83 E-value=0.2 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004038 92 NIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999643
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.75 E-value=0.42 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+|+|+|.+|+||||+.+.|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975555
No 457
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.71 E-value=0.38 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.--.++|+|+.|+|||||++.|. |...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIA---GIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH---TSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHh---cCCC
Confidence 33478999999999999999994 6543
No 458
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.71 E-value=0.39 Score=46.25 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll 111 (777)
-|+|.|.+|+||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999996
No 459
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.65 E-value=0.4 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.-.|+|+|++|+|||||+++|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999743
No 460
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.65 E-value=0.39 Score=52.10 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|+|||||++.|. |...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~ia---Gl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIA---GLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH---TSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHH---cCCC
Confidence 3478999999999999999994 6543
No 461
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=85.63 E-value=1.1 Score=44.87 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=53.2
Q ss_pred eeEEEEEecCcchhhHHHHHhcCCceeeeeeccCCCeEEEEEEechhhhhchHHHhhccCCceEEEEE
Q 004038 685 IMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIM 752 (777)
Q Consensus 685 i~~~eI~~p~~~~g~V~~~l~~rrg~i~~~~~~~g~~~~i~a~~P~~e~~g~~~~Lrs~T~G~a~~~~ 752 (777)
-|++.|.+|.+|.|.+++.|.+ -|.|..++-.+++.....+.+|-.---.+.+.|++.|+|.|.+..
T Consensus 169 ~m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 169 EMEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 4788999999999999999954 467877775543456677889987656788899999999997654
No 462
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.62 E-value=2.3 Score=43.75 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+.|.+.|.+|+|||||+.++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999744
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.53 E-value=0.51 Score=47.59 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
+...|+|.|.+|+||||+.+.|....|
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999975544
No 464
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.49 E-value=0.39 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|+|||||++.|. |...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIA---GLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH---TSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHH---cCCC
Confidence 3478999999999999999994 6543
No 465
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.47 E-value=3.8 Score=44.60 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
-..++|+|.+|+|||||+..|+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 3579999999999999999775
No 466
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.42 E-value=0.4 Score=51.86 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcce-eeee
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEV 123 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~-~g~v 123 (777)
+--.++|+|+.|+|||||++.|. |.... .|.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I 68 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRI 68 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHH---cCCCCCceEE
Confidence 34578999999999999999994 65432 3444
No 467
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.41 E-value=0.51 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g~ 116 (777)
+|.|+|.+||||+|.+..|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999866664
No 468
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.32 E-value=0.75 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
.+.++++|++|+|||||+++|....
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3459999999999999999997443
No 469
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.10 E-value=3 Score=45.99 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 85 ~~~~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
......+-|.+.|++|+|||+|+.++...+|
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445678999999999999999999975544
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.94 E-value=0.54 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975555
No 471
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.91 E-value=1.3 Score=44.23 Aligned_cols=43 Identities=14% Similarity=-0.019 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHHcCCCEEEEEEccCCCCc
Q 004038 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (777)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iiviNKiD~~~~ 222 (777)
+.-+++||-..-+.....+.+..+...++++|++.-..|-.+.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCC
Confidence 4567888877655554555666665679999999988886543
No 472
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.82 E-value=0.57 Score=47.34 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+.++++|++|+|||||++++...
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999643
No 473
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.80 E-value=0.5 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHH
Q 004038 90 YRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
-..++|+|++|+|||||+..|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999999999996
No 474
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.74 E-value=0.57 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
+...|+|+|.+|+||||+++.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999853
No 475
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.63 E-value=6.3 Score=41.00 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=25.9
Q ss_pred CeEEEEEeCCCCCc-hHHHH-HHHHHHH--cCCCEEEEEEccCCCC
Q 004038 180 DGAICLFDSVAGVE-PQSET-VWRQADK--YGVPRICFVNKMDRLG 221 (777)
Q Consensus 180 D~~ilVvda~~g~~-~~~~~-~~~~~~~--~~~p~iiviNKiD~~~ 221 (777)
+..++++|=.+.+. ..... ++..+.. .++.+|+.-|..+...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGII 150 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSC
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccC
Confidence 67788888887776 44333 3344444 3566777777766443
No 476
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.58 E-value=4.4 Score=47.92 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=53.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcceeeeeecCCccccchhhhhhcceeEeeeEEEEEecCeEEEEEeCCCCcch
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDTPG~~df 168 (777)
...++.+.|.+|+|||+|+.+|....+. ....++. +.+++.+ ++.. .+=..||+..+
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~--~~~~i~~-s~~~~~~--------~~~~------------l~g~~~g~~g~ 543 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM-SEYMERH--------TVSR------------LIGAPPGYVGF 543 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG-GGCSSSS--------CCSS------------SCCCCSCSHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcC--CEEEEec-hhhcchh--------hHhh------------hcCCCCCCcCc
Confidence 3458999999999999999999755531 1111110 0000000 0000 00113565433
Q ss_pred H--HHHHHHHHhcCeEEEEEeCCCCCchHHHHHHHHHHH
Q 004038 169 T--LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205 (777)
Q Consensus 169 ~--~~~~~~l~~aD~~ilVvda~~g~~~~~~~~~~~~~~ 205 (777)
. .....+++.+...++++|=.+...+.....+.++..
T Consensus 544 ~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 544 DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 2 224566778888999999888777766665555444
No 477
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.48 E-value=4.9 Score=42.73 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+++.|.|.+|+|||||++.+...
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999744
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.39 E-value=0.7 Score=45.03 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.....|+|+|.+|+||||+.+.|....|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999975434
No 479
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.27 E-value=3.2 Score=41.12 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004038 91 RNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 91 ~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+.|.|.+|+|||+|+-.++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47889999999999999887643
No 480
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.23 E-value=4.3 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
..++.|.|.+|+|||||+..+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999999997443
No 481
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.12 E-value=0.35 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
--.++|+|+.|+|||||++.|. |...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIA---GFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHH---TSSC
T ss_pred CCEEEEECCCCccHHHHHHHHH---cCCC
Confidence 3478999999999999999994 6543
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.92 E-value=2 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
-..+.|.|.+|+|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 457888999999999999998744
No 483
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.54 E-value=0.57 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004038 92 NIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
-++|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999644
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.35 E-value=0.77 Score=45.95 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.+...|+|+|.+|+||||+.+.|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999975444
No 485
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.29 E-value=0.78 Score=45.94 Aligned_cols=27 Identities=22% Similarity=0.083 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
.+...|+|.|.+|+||||+++.|....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999997443
No 486
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.28 E-value=0.59 Score=48.55 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHH
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.+--.++|+|++|+|||||+..|.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 334578999999999999999986
No 487
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.25 E-value=2.3 Score=45.52 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...+.|.|.|.+|+|||+|+.++....+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456899999999999999999975443
No 488
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=83.17 E-value=4 Score=46.87 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=56.9
Q ss_pred CCeEEEEE--EEeecCCCceEEEEEEEeeeecCCCeEEeCCCCceeecceeEEeccCceeecceeecCCEEEEc--CC--
Q 004038 388 EPFAGLAF--KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL-- 461 (777)
Q Consensus 388 ~p~~~~V~--K~~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~ki~~i~~~~g~~~~~v~~a~aGdIv~i~--gl-- 461 (777)
+|..+.|. .++..+. |.++-++|..|++++|..|.. +++. ..++|-.+. +...+|+++.+|.-|+|. +.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~-~~k~~v~~~~~g~e~gi~~~~~~~ 536 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ-DKGENLKSASRGQKVAMAIKDAVY 536 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE-ETTEEESEEETTCCEEEEEETCCB
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc-ccCccccccCCCCEEEEEEeCccc
Confidence 45555433 2444455 899999999999999999998 5553 444444444 234789999999999983 43
Q ss_pred -Ccccccceecc
Q 004038 462 -KDTITGETLCD 472 (777)
Q Consensus 462 -~~~~~GdtL~~ 472 (777)
+++..||.|-.
T Consensus 537 ~~~~~~~d~~~~ 548 (594)
T 1g7s_A 537 GKTIHEGDTLYV 548 (594)
T ss_dssp TTTBCTTCEEEE
T ss_pred CCCCCCCCEEEE
Confidence 46788998854
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.16 E-value=3.3 Score=43.55 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
...+.|.+.|.+|+|||+|+.++....
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345789999999999999999997443
No 490
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.99 E-value=0.74 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
.|+|.|.+|+||||+.+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999975544
No 491
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.82 E-value=0.76 Score=47.21 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+.|+|+|++|+|||||+++|...
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcChHHHHHHHHHHH
Confidence 345999999999999999999643
No 492
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.75 E-value=0.83 Score=46.21 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
..+.|.++|.+|+|||||+.++....
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 34679999999999999999996443
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.73 E-value=0.61 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHH
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVL 111 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll 111 (777)
.-..++|+|+.|+|||||++.|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999995
No 494
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.67 E-value=0.35 Score=52.03 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhcCCcc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNY 118 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~g~~~ 118 (777)
.--.++|+|+.|+|||||++.|. |...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~ia---Gl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIA---GLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHH---TSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCC
Confidence 34478999999999999999994 6543
No 495
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.66 E-value=0.64 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
..+++.|.|.+|+|||||+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999643
No 496
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.63 E-value=3 Score=54.22 Aligned_cols=26 Identities=31% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~ 113 (777)
.+.++|.+.|++|+|||+|+-++...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999744
No 497
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.60 E-value=0.73 Score=48.91 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Q 004038 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (777)
Q Consensus 90 ~~nI~iiG~~~~GKSTL~~~Ll~~~g 115 (777)
...++++|++|+|||||++.+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35799999999999999999975544
No 498
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.58 E-value=1.8 Score=48.57 Aligned_cols=26 Identities=8% Similarity=-0.155 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 89 ~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
+-.-+.|.|.+|+|||||+-.++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34568899999999999999987543
No 499
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.47 E-value=9.9 Score=39.99 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004038 92 NIGIMAHIDAGKTTTTERVLF 112 (777)
Q Consensus 92 nI~iiG~~~~GKSTL~~~Ll~ 112 (777)
.+.|.|++|+|||||+-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999888763
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.45 E-value=2.1 Score=45.76 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhc
Q 004038 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (777)
Q Consensus 88 ~~~~nI~iiG~~~~GKSTL~~~Ll~~~ 114 (777)
...+.|.|.|.+|+|||+|+.++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999997443
Done!