BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004039
         (777 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|B Chain B, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|C Chain C, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|D Chain D, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|E Chain E, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|F Chain F, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|2OAU|G Chain G, Mechanosensitive Channel Of Small Conductance (Mscs)
 pdb|4HWA|A Chain A, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|B Chain B, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|C Chain C, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|D Chain D, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|E Chain E, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|F Chain F, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
 pdb|4HWA|G Chain G, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
           State)
          Length = 306

 Score = 37.7 bits (86), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 567 MGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEE 626
           +G+ T  VI  L +  +A       +   +   ++ V    PF  G+   + GV   V  
Sbjct: 109 VGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVM-FRPFRAGEYVDLGGVAGTVLS 167

Query: 627 MNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKI 680
           + I +T       + I  PN  +    I N++R P   +     +A+ + I+++
Sbjct: 168 VQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV 221


>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|B Chain B, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|C Chain C, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|D Chain D, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|E Chain E, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|F Chain F, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
 pdb|4AGE|G Chain G, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
          Length = 286

 Score = 37.0 bits (84), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 567 MGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEE 626
           +G+ T  VI  L +  +A       +   +   ++ V    PF  G+   + GV   V  
Sbjct: 89  VGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVM-FRPFRAGEYVDLGGVAGTVLS 147

Query: 627 MNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKI 680
           + I +T       + I  PN  +    I N++R P   +     +A+ + I+++
Sbjct: 148 VQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV 201


>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|B Chain B, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|C Chain C, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|D Chain D, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|E Chain E, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|F Chain F, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
 pdb|4AGF|G Chain G, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
          Length = 286

 Score = 36.2 bits (82), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 567 MGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEE 626
           +G+ T  VI  L +  +A       +   +   ++ V    PF  G+   + GV   V  
Sbjct: 89  VGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLCVM-FRPFRAGEYVDLGGVAGTVLS 147

Query: 627 MNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKI 680
           + I +T       + I  PN  +    I N++R P   +     +A+ + I+++
Sbjct: 148 VQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV 201


>pdb|2VV5|A Chain A, The Open Structure Of Mscs
 pdb|2VV5|B Chain B, The Open Structure Of Mscs
 pdb|2VV5|C Chain C, The Open Structure Of Mscs
 pdb|2VV5|D Chain D, The Open Structure Of Mscs
 pdb|2VV5|E Chain E, The Open Structure Of Mscs
 pdb|2VV5|F Chain F, The Open Structure Of Mscs
 pdb|2VV5|G Chain G, The Open Structure Of Mscs
          Length = 286

 Score = 35.4 bits (80), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 567 MGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEE 626
           +G+ T  VI  L +  +        +   +   ++ V    PF  G+   + GV   V  
Sbjct: 89  VGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVM-FRPFRAGEYVDLGGVAGTVLS 147

Query: 627 MNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKI 680
           + I +T       + I  PN  +    I N++R P   +     +A+ + I+++
Sbjct: 148 VQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,378,828
Number of Sequences: 62578
Number of extensions: 766791
Number of successful extensions: 1564
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 8
length of query: 777
length of database: 14,973,337
effective HSP length: 106
effective length of query: 671
effective length of database: 8,340,069
effective search space: 5596186299
effective search space used: 5596186299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)