Query 004039
Match_columns 777
No_of_seqs 357 out of 2016
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 3E-101 6E-106 887.2 35.2 701 16-768 1-704 (714)
2 PRK10334 mechanosensitive chan 100.0 3.1E-37 6.7E-42 329.9 34.1 243 512-771 41-284 (286)
3 PRK11281 hypothetical protein; 100.0 1.8E-33 3.9E-38 342.0 44.8 221 541-770 872-1094(1113)
4 PRK10929 putative mechanosensi 100.0 2.7E-33 5.9E-38 339.2 31.9 243 512-769 846-1090(1109)
5 PF00924 MS_channel: Mechanose 100.0 1.2E-32 2.6E-37 279.7 23.2 203 549-755 2-206 (206)
6 PRK11465 putative mechanosensi 100.0 3.7E-30 8E-35 300.8 33.4 216 540-767 506-725 (741)
7 COG3264 Small-conductance mech 100.0 1.8E-30 3.9E-35 300.9 27.0 259 481-766 552-812 (835)
8 COG0668 MscS Small-conductance 100.0 5.9E-29 1.3E-33 267.0 32.1 214 546-769 86-302 (316)
9 COG5126 FRQ1 Ca2+-binding prot 92.8 0.23 4.9E-06 49.7 6.1 58 467-525 55-120 (160)
10 KOG0044 Ca2+ sensor (EF-Hand s 92.2 0.32 7E-06 50.0 6.4 85 465-550 61-152 (193)
11 PF00036 EF-hand_1: EF hand; 91.9 0.15 3.3E-06 36.4 2.6 28 498-525 1-28 (29)
12 PF13499 EF-hand_7: EF-hand do 91.2 0.44 9.5E-06 39.4 5.2 53 471-523 3-66 (66)
13 cd00052 EH Eps15 homology doma 90.7 0.76 1.6E-05 37.7 6.2 56 471-526 2-62 (67)
14 cd05022 S-100A13 S-100A13: S-1 90.2 1.5 3.2E-05 39.6 7.9 64 465-528 5-78 (89)
15 cd05026 S-100Z S-100Z: S-100Z 88.6 1.6 3.5E-05 39.4 7.0 62 465-526 7-82 (93)
16 cd05023 S-100A11 S-100A11: S-1 88.2 1.7 3.6E-05 39.2 6.8 62 466-527 7-82 (89)
17 cd00213 S-100 S-100: S-100 dom 88.0 2 4.4E-05 37.8 7.2 62 466-527 6-81 (88)
18 cd05030 calgranulins Calgranul 87.9 2 4.4E-05 38.3 7.2 62 465-526 5-80 (88)
19 smart00027 EH Eps15 homology d 87.7 2.1 4.6E-05 38.5 7.3 61 467-527 9-74 (96)
20 KOG0027 Calmodulin and related 87.6 1.3 2.9E-05 43.1 6.4 59 470-528 46-116 (151)
21 cd05029 S-100A6 S-100A6: S-100 86.7 1.5 3.3E-05 39.3 5.6 59 468-526 10-80 (88)
22 cd05025 S-100A1 S-100A1: S-100 85.5 3 6.5E-05 37.2 7.0 61 466-526 7-81 (92)
23 cd00051 EFh EF-hand, calcium b 83.9 2.7 5.8E-05 32.6 5.3 52 471-522 3-61 (63)
24 cd05031 S-100A10_like S-100A10 82.8 4.5 9.8E-05 36.3 6.9 61 465-525 5-79 (94)
25 KOG0034 Ca2+/calmodulin-depend 82.5 2.6 5.7E-05 43.2 5.9 61 468-528 66-135 (187)
26 PRK12309 transaldolase/EF-hand 82.3 2.3 5E-05 48.4 5.9 62 461-528 327-388 (391)
27 PF13833 EF-hand_8: EF-hand do 82.1 2.3 4.9E-05 33.9 4.2 42 484-525 4-53 (54)
28 PTZ00184 calmodulin; Provision 81.2 3.7 8.1E-05 38.6 6.1 58 469-526 48-113 (149)
29 PTZ00183 centrin; Provisional 80.9 3.9 8.5E-05 39.1 6.3 56 469-524 91-153 (158)
30 PF13405 EF-hand_6: EF-hand do 79.4 1.7 3.6E-05 31.0 2.4 26 499-524 2-27 (31)
31 KOG0028 Ca2+-binding protein ( 79.4 3.7 8E-05 41.1 5.4 56 472-527 73-136 (172)
32 PF13202 EF-hand_5: EF hand; P 78.8 1.5 3.3E-05 30.1 1.9 23 500-522 2-24 (25)
33 PLN02964 phosphatidylserine de 78.3 4 8.7E-05 49.3 6.4 58 468-525 179-243 (644)
34 PTZ00184 calmodulin; Provision 78.1 5.4 0.00012 37.5 6.1 56 468-523 84-146 (149)
35 cd05027 S-100B S-100B: S-100B 77.2 9.4 0.0002 34.2 7.0 62 466-527 6-81 (88)
36 PTZ00183 centrin; Provisional 74.5 8.4 0.00018 36.8 6.5 58 469-526 54-119 (158)
37 KOG1924 RhoA GTPase effector D 71.3 25 0.00055 42.9 10.3 13 56-68 533-545 (1102)
38 cd00252 SPARC_EC SPARC_EC; ext 69.1 13 0.00027 35.3 6.1 58 466-523 46-106 (116)
39 KOG1923 Rac1 GTPase effector F 62.1 39 0.00084 41.3 9.5 17 178-194 389-405 (830)
40 PF12763 EF-hand_4: Cytoskelet 59.8 32 0.0007 32.0 6.8 60 467-527 9-73 (104)
41 PF13499 EF-hand_7: EF-hand do 58.2 7.2 0.00016 32.1 2.1 29 499-527 2-30 (66)
42 KOG4812 Golgi-associated prote 58.0 59 0.0013 34.7 9.0 39 80-127 75-113 (262)
43 smart00054 EFh EF-hand, calciu 57.1 9.1 0.0002 24.6 2.1 26 499-524 2-27 (29)
44 smart00739 KOW KOW (Kyprides, 56.1 16 0.00036 24.9 3.3 21 608-628 1-26 (28)
45 PF09279 EF-hand_like: Phospho 55.1 18 0.00039 31.5 4.1 25 471-496 3-27 (83)
46 COG5126 FRQ1 Ca2+-binding prot 53.9 23 0.00051 35.5 5.2 54 471-524 95-155 (160)
47 KOG1924 RhoA GTPase effector D 53.9 59 0.0013 40.0 9.2 6 217-222 706-711 (1102)
48 PRK05886 yajC preprotein trans 52.6 55 0.0012 30.9 7.1 38 607-644 37-75 (109)
49 KOG0027 Calmodulin and related 50.9 29 0.00062 33.8 5.3 56 468-523 85-147 (151)
50 PRK13875 conjugal transfer pro 50.2 49 0.0011 38.3 7.5 33 573-605 171-209 (440)
51 KOG0034 Ca2+/calmodulin-depend 49.2 35 0.00075 35.2 5.7 65 461-526 27-96 (187)
52 PRK11465 putative mechanosensi 47.6 92 0.002 38.6 9.8 61 279-340 427-487 (741)
53 COG5346 Predicted membrane pro 46.7 1.2E+02 0.0026 29.2 8.3 14 577-590 115-128 (136)
54 PRK05585 yajC preprotein trans 46.0 50 0.0011 30.9 5.8 38 607-644 51-89 (106)
55 KOG0038 Ca2+-binding kinase in 44.3 70 0.0015 31.8 6.6 59 469-527 72-138 (189)
56 PF06084 Cytomega_TRL10: Cytom 43.1 14 0.0003 34.9 1.5 6 142-147 121-126 (150)
57 TIGR00739 yajC preprotein tran 42.5 70 0.0015 28.7 5.9 38 607-644 36-74 (84)
58 PRK11281 hypothetical protein; 38.8 42 0.00091 43.4 5.3 64 236-302 835-898 (1113)
59 COG1862 YajC Preprotein transl 38.0 1.2E+02 0.0025 28.2 6.7 37 609-645 44-81 (97)
60 cd00052 EH Eps15 homology doma 36.9 29 0.00063 28.1 2.5 25 501-525 3-27 (67)
61 cd05024 S-100A10 S-100A10: A s 36.3 1.5E+02 0.0033 27.1 7.1 61 466-527 6-78 (91)
62 cd04466 S1_YloQ_GTPase S1_YloQ 35.5 51 0.0011 27.3 3.8 29 607-635 36-67 (68)
63 cd05025 S-100A1 S-100A1: S-100 34.3 37 0.0008 30.2 2.9 29 497-525 9-39 (92)
64 PF09953 DUF2187: Uncharacteri 34.2 45 0.00098 27.9 3.1 20 609-628 4-24 (57)
65 PF03526 Microcin: Colicin E1 33.9 58 0.0012 26.9 3.5 35 322-356 8-42 (55)
66 PF09926 DUF2158: Uncharacteri 33.8 41 0.00088 27.7 2.7 20 609-628 1-22 (53)
67 cd05031 S-100A10_like S-100A10 33.6 47 0.001 29.7 3.4 28 498-525 9-38 (94)
68 cd05026 S-100Z S-100Z: S-100Z 33.4 37 0.00081 30.5 2.8 29 498-526 11-41 (93)
69 PF04156 IncA: IncA protein; 32.1 1.6E+02 0.0034 29.7 7.4 11 577-587 40-50 (191)
70 smart00027 EH Eps15 homology d 32.0 42 0.00091 30.1 2.9 28 498-525 11-38 (96)
71 PRK10263 DNA translocase FtsK; 31.5 1.9E+02 0.0042 38.1 9.3 23 733-755 928-950 (1355)
72 PF00467 KOW: KOW motif; Inte 31.4 70 0.0015 23.1 3.4 19 611-629 1-24 (32)
73 cd00213 S-100 S-100: S-100 dom 30.1 48 0.0011 29.0 2.9 29 497-525 8-38 (88)
74 PF15325 MRI: Modulator of ret 29.3 75 0.0016 29.4 3.9 12 179-190 89-100 (106)
75 PF14801 GCD14_N: tRNA methylt 29.3 34 0.00075 28.3 1.6 19 606-624 3-21 (54)
76 PRK10929 putative mechanosensi 28.6 77 0.0017 41.1 5.3 75 225-302 808-895 (1109)
77 COG4873 Uncharacterized protei 27.0 75 0.0016 27.4 3.2 44 586-633 5-49 (81)
78 PF07086 DUF1352: Protein of u 26.8 1.1E+02 0.0024 31.6 5.1 57 195-252 32-90 (186)
79 COG3071 HemY Uncharacterized e 26.5 3.2E+02 0.0069 31.4 9.0 52 318-369 40-91 (400)
80 cd05022 S-100A13 S-100A13: S-1 26.1 61 0.0013 29.2 2.8 27 499-525 10-37 (89)
81 PF10003 DUF2244: Integral mem 26.1 3.1E+02 0.0067 26.7 7.9 46 571-629 35-80 (140)
82 PF06107 DUF951: Bacterial pro 26.0 1.4E+02 0.003 25.1 4.6 42 609-650 2-49 (57)
83 KOG0036 Predicted mitochondria 25.2 1.4E+02 0.003 34.5 5.9 60 468-527 51-112 (463)
84 PF10951 DUF2776: Protein of u 24.8 4.3E+02 0.0092 29.4 9.2 112 213-335 197-310 (347)
85 KOG2643 Ca2+ binding protein, 24.1 19 0.0004 41.4 -1.1 51 473-524 206-260 (489)
86 KOG0044 Ca2+ sensor (EF-Hand s 23.3 1.8E+02 0.0039 30.2 5.9 54 470-523 28-90 (193)
87 PRK06531 yajC preprotein trans 22.7 2E+02 0.0044 27.3 5.7 38 609-647 37-77 (113)
88 PRK13889 conjugal transfer rel 22.6 1.1E+02 0.0025 39.2 5.2 43 607-649 599-651 (988)
89 cd00252 SPARC_EC SPARC_EC; ext 22.0 80 0.0017 30.0 2.9 29 495-523 46-74 (116)
90 cd00051 EFh EF-hand, calcium b 21.9 90 0.0019 23.6 2.8 28 499-526 2-29 (63)
91 TIGR02768 TraA_Ti Ti-type conj 21.7 1.2E+02 0.0026 37.7 5.1 43 607-649 606-658 (744)
92 PRK12281 rplX 50S ribosomal pr 21.6 1E+02 0.0023 27.1 3.3 23 608-630 6-33 (76)
93 PF08566 Pam17: Mitochondrial 21.5 3E+02 0.0066 28.1 6.9 31 566-596 71-101 (173)
94 PF11368 DUF3169: Protein of u 21.3 1.3E+02 0.0028 32.0 4.6 11 325-335 224-234 (248)
95 cd05027 S-100B S-100B: S-100B 20.9 89 0.0019 28.0 2.8 28 498-525 9-38 (88)
96 PF01941 AdoMet_Synthase: S-ad 20.6 3.6E+02 0.0077 31.1 8.0 86 665-751 155-244 (396)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.9e-101 Score=887.18 Aligned_cols=701 Identities=41% Similarity=0.692 Sum_probs=606.4
Q ss_pred ccccccCCCCcEEEEcCCCCCCCCcccccCCCCCCCCCCCCCcccccccccCCCCCCCcCccCCCCCCCCCCCCCchhhh
Q 004039 16 MSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAA 95 (777)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 95 (777)
|.|.+.+||.|+.++..+++..++. +.+ ++ ..-+| .| |+++ +|++.|-+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~----------~l~~~--~~-p~~~------~~~~~~~~~--- 50 (714)
T KOG4629|consen 1 MNEHRRSNGQELSYNVWDEEKSRAS------QIA--ES----------SLDIE--SP-PNSS------SPIFTPVSR--- 50 (714)
T ss_pred CCcccccCCCCCccccCCccccccc------hhh--he----------eccCC--CC-CCCC------CCceeeccc---
Confidence 6778899999999999999776522 111 11 11122 12 3333 667777665
Q ss_pred hhhhccccccccCCCCCCCCCCCCC-CCCCccccccccccccccCcCCCCCCCCCCCCCCCCCCCCcccCccCCCCCCCC
Q 004039 96 TLARRRSLARSVYSKPKSRFGEPSY-IDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMA 174 (777)
Q Consensus 96 ~~~~~~~~~~~~~~k~ksr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (777)
..+||+++.++.|++++.||.|+-+ .--+..++. +.++...+..| .++++.|+++... +++ .+..+...+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~-----~~~~~~~~~s~-~f~p~~~~~~n~~-~~~--~~~~s~~~a 121 (714)
T KOG4629|consen 51 GRVRRRSLPYILYSQEELRRTEYGETVRCTSRKMP-----SMIFFASKRSR-DFDPAEPNNRNRF-SNS--GETTSGELA 121 (714)
T ss_pred chhhhccccceecccccccccCCcceEEeccccCh-----Hhhhhhhhccc-ccCCCCCCCCCcc-cCc--ccccccccc
Confidence 6899999999999999999999866 332222211 22333333444 5677777777321 111 111112212
Q ss_pred CCCCCCCCCHHHHHhhHHHH-HhhcCCCcchhhHHHHHHHHHHHHhhcccccccccceeeehhhHHHHHHHHHHHHhHHH
Q 004039 175 SPRGPGEDDEEIYKKVKLIK-EKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLV 253 (777)
Q Consensus 175 ~~~~~~d~de~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~w~~~lw~W~~~~~v~~~G~lv 253 (777)
.+ ++|++|+++.+..+.. .++.++.++.+++|+.+++++..|+|+|.|........|++..|+|++.+++..||+|+
T Consensus 122 ~~--~~~~e~~~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv 199 (714)
T KOG4629|consen 122 PS--EKDEEESIFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLV 199 (714)
T ss_pred CC--cccccccccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHH
Confidence 11 1266667777777744 55578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHheeeEEEEeccccccceeeeeeeccchhhHHHHHHH-HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHH
Q 004039 254 TNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLA-LVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAF 332 (777)
Q Consensus 254 ~~w~~~i~vflie~nfl~~kk~lyfv~~l~~~v~~~~W~~-~~l~~~~~l~~~~v~~~~~~~~~l~~v~kiL~~~lv~a~ 332 (777)
+.|++.+++|+++.|++.|++++||++|+++.+|.|+|++ +++++|..+|+..+.+....+ .+.+++++ +|++++++
T Consensus 200 ~~~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~ 277 (714)
T KOG4629|consen 200 SSWFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEF 277 (714)
T ss_pred HhhHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHH
Confidence 9999999999999999999999999999999999999999 999999999999887765545 88899999 99999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHhhhhHHHHHHhcCCcchHHHhhcCCCCCCCCccccccccCCCcccccccchhh
Q 004039 333 LWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGK 412 (777)
Q Consensus 333 ~~l~ek~liq~iA~sfH~~~y~dRI~es~~~~~~L~~Ls~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (777)
+|++||+++|++|++||+++|++||||++|+||+|++||+||+ .+++||. +.++..+.......+ +.. +++++
T Consensus 278 ~~lv~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~---~e~~gr~-s~~~~~~s~~~~r~~--s~~-i~~~~ 350 (714)
T KOG4629|consen 278 MWLVKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPR---EEDVGRE-STFRAIFSPGLSRSG--SAK-IGMDK 350 (714)
T ss_pred HhhchhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCcc---ccccccc-ccceeeccccccchh--hcc-cccch
Confidence 9999999999999999999999999999999999999999999 4446775 323433333322221 112 78899
Q ss_pred hhcccccccchhhhHhhHHhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHHHhccCCCccccHHHHHh
Q 004039 413 VHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLR 492 (777)
Q Consensus 413 l~k~~~~~~sa~~~~~l~~~~~~~~l~ti~~~l~~~~~~~~~~~~~~i~s~~~A~alAr~If~~~~~~g~~~l~~eDl~~ 492 (777)
+|++++.++++|+|+.+++.+...|+++++..++.... ......+++|+++|+++|++||.+++.||..++++||+.+
T Consensus 351 l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~~--~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~ 428 (714)
T KOG4629|consen 351 LHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLSTS--KDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLR 428 (714)
T ss_pred hhhhhHhhhcHhhhhHHHHHHhccCcccCCcccccccc--ccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhh
Confidence 99999999999999999999999999999887665431 1123358999999999999999999999999999999999
Q ss_pred hccHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHhHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 004039 493 FMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATT 572 (777)
Q Consensus 493 f~~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~eRk~L~~Sl~d~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t 572 (777)
|+.+|+|+.+|.+|++...+.|+++.+++|++++|+||++|+++++|+++++++|++++.+++.++++++++.++|++.+
T Consensus 429 f~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~ 508 (714)
T KOG4629|consen 429 FMGDEEAERAFSLFEGASDENITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTS 508 (714)
T ss_pred cCCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccce
Confidence 99999999999999986444499999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCcEEEEecccccCC
Q 004039 573 KVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATK 652 (777)
Q Consensus 573 ~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~ 652 (777)
.+++.++++.++++|+|+++++++|.|+||+|+.|||||||||.|||+.+.|+||||++|+|.++||++++|||++|+++
T Consensus 509 ~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k 588 (714)
T KOG4629|consen 509 KLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTK 588 (714)
T ss_pred eeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEEecCCceEEEEEEEEEccccccccc
Q 004039 653 PISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGE 732 (777)
Q Consensus 653 ~I~N~sRS~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~ 732 (777)
+|.|++||+.|.+.++|.++..|+++|++.|+++|.+|++++|.+|.|.+.+.+.++++.|++.+.+++.|+.||||..+
T Consensus 589 ~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~ 668 (714)
T KOG4629|consen 589 AISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKE 668 (714)
T ss_pred hhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccCC
Q 004039 733 KNNRRSALITELKKFFEELEINYSLLPQQVHLHHIG 768 (777)
Q Consensus 733 r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~~ 768 (777)
++.||.+++.++.+.|+|+||+|.++|+++++.+.+
T Consensus 669 ~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~ 704 (714)
T KOG4629|consen 669 RWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP 704 (714)
T ss_pred HHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC
Confidence 999999999999999999999999999999999876
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=3.1e-37 Score=329.90 Aligned_cols=243 Identities=18% Similarity=0.294 Sum_probs=214.1
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 004039 512 GQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGT 591 (777)
Q Consensus 512 G~Is~~~l~~~vv~i~~eRk~L~~Sl~d~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~ 591 (777)
|.+..+.+..++.+.. +++ +-..+..+.+.+++.+++++++++++|..+|++++++++++|++++|+||++|+
T Consensus 41 ~~~~~~~i~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~ 113 (286)
T PRK10334 41 GLIIARMISNAVNRLM-ISR------KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQG 113 (286)
T ss_pred HHHHHHHHHHHHHHHH-Hhc------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444433 221 113467788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEE
Q 004039 592 TCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSI 671 (777)
Q Consensus 592 tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~~~~~i~~~V 671 (777)
+++|+ .||++|++.+||++||+|+++|..|+|++|++++|++++.||+.++|||+.+.++.|.|||+.+.++..+++.|
T Consensus 114 ~l~N~-~sGi~i~~~rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V 192 (286)
T PRK10334 114 SLSNL-AAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGV 192 (286)
T ss_pred HHHHH-HHHHHHHhcCCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEe
Confidence 99995 57899999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred eecCCHHHHHHHHHHHHHHHHhCCCCC-CCCcEEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHH
Q 004039 672 AFATPIEKIGMLKERIKLYLENNSLHW-HPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEE 750 (777)
Q Consensus 672 ~~~Td~ekIe~Lk~~I~~~l~s~p~~~-~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e 750 (777)
+|++|+++ +++.+++.++++|... .|.|.+.+.+++| +++++.+++|.+. ..++..+++++.+++++|++
T Consensus 193 ~y~~d~~~---~~~il~~~~~~~~~vl~~p~p~v~~~~~~d-ssi~~~v~~wv~~-----~~~~~~~~~~~~~I~~~f~~ 263 (286)
T PRK10334 193 AYDSDIDQ---VKQILTNIIQSEDRILKDREMTVRLNELGA-SSINFVVRVWSNS-----GDLQNVYWDVLERIKREFDA 263 (286)
T ss_pred cCCCCHHH---HHHHHHHHHHhCCceecCCCCEEEEEeeeC-ceEEEEEEEEEec-----chhHHHHHHHHHHHHHHHHH
Confidence 99999999 6777999999999987 6788999999999 8999999888753 34678899999999999999
Q ss_pred cCCcccCCCeeEEeccCCCCC
Q 004039 751 LEINYSLLPQQVHLHHIGTES 771 (777)
Q Consensus 751 ~GI~~~~P~~~V~l~~~~~~~ 771 (777)
+||++|+|++++++.+.+++.
T Consensus 264 ~gI~ip~p~~~v~~~~~~~~~ 284 (286)
T PRK10334 264 AGISFPYPQMDVNFKRVKEDK 284 (286)
T ss_pred CCCcCCCCCeEEEeccCCccc
Confidence 999999999999998776653
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=341.99 Aligned_cols=221 Identities=16% Similarity=0.278 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCe
Q 004039 541 KTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGV 620 (777)
Q Consensus 541 ~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~ 620 (777)
.+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|++++|+ .||++|++++||+|||+|+|+|.
T Consensus 872 ~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNf-ISGiiIl~eRPfrIGD~I~I~~~ 950 (1113)
T PRK11281 872 QGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANF-VSGLIILFERPVRIGDTVTIGTF 950 (1113)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcCCCCEEEECCE
Confidence 35667788999999999999999999999999999999999999999999999995 57888999999999999999999
Q ss_pred eEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCC-ceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCC-
Q 004039 621 PLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPD-MSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHW- 698 (777)
Q Consensus 621 ~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~-~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~- 698 (777)
.|+|++|++++|+++++||+.|+|||+.+.++.|+|||+++. ++..++|+|+|++|+++ +++.+.+.++++|.+.
T Consensus 951 ~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~---v~~iL~eaa~~~p~Vl~ 1027 (1113)
T PRK11281 951 SGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEK---VRELLLQAATENPRVMK 1027 (1113)
T ss_pred EEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHcCccccc
Confidence 999999999999999999999999999999999999999875 68999999999999999 6777999999999987
Q ss_pred CCCcEEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccCCCC
Q 004039 699 HPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTE 770 (777)
Q Consensus 699 ~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~~~~ 770 (777)
+|.|.|.+.++++ +++.+.+++|.+ +.+.++..+++++.+|+++|+++||++|+|+++||+.+...+
T Consensus 1028 ~P~P~V~~~~fgd-ssi~~~lr~wv~----~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~~~ 1094 (1113)
T PRK11281 1028 EPEPQVFFLNFGA-STLDHELRLYVR----ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQKGD 1094 (1113)
T ss_pred CCCCEEEEEeccC-ceEEEEEEEEEc----CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCCcc
Confidence 7889999999999 899998888874 346788999999999999999999999999999999876554
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=339.22 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=213.5
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 004039 512 GQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGT 591 (777)
Q Consensus 512 G~Is~~~l~~~vv~i~~eRk~L~~Sl~d~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~ 591 (777)
|.+..+.+..++.+.+..| .+-..+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|+
T Consensus 846 ~~~l~r~l~~lle~~l~~~------~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ 919 (1109)
T PRK10929 846 TTQLVRNLPALLELALLQH------LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQE 919 (1109)
T ss_pred HHHHHHHHHHHHHHHHhhh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555444333222 2224578888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCC-ceEEEEEE
Q 004039 592 TCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPD-MSDTVEFS 670 (777)
Q Consensus 592 tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~-~~~~i~~~ 670 (777)
+++| |.||++|++++||+|||+|+|+|..|+|++|++++|+++++||..|+|||+.+.++.|+|||+++. ++..+.|+
T Consensus 920 ilsN-fiSGIiIL~erPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~Vg 998 (1109)
T PRK10929 920 IFAN-FISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIP 998 (1109)
T ss_pred HHHH-HHHHHHHHHhCCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEE
Confidence 9999 558899999999999999999999999999999999999999999999999999999999999876 68999999
Q ss_pred EeecCCHHHHHHHHHHHHHHHHhCCCCC-CCCcEEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHH
Q 004039 671 IAFATPIEKIGMLKERIKLYLENNSLHW-HPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFE 749 (777)
Q Consensus 671 V~~~Td~ekIe~Lk~~I~~~l~s~p~~~-~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~ 749 (777)
|+|++|+++ +++.+.+.++++|.+. +|.|.|.+.++++ +.+.+.+++|.+ +...++..+++++..|++.|+
T Consensus 999 V~Y~sDie~---v~~iL~eaa~~~~~VL~~P~P~V~~~~fgd-ssi~~elr~wv~----~~~~~~~v~~el~~~I~~~F~ 1070 (1109)
T PRK10929 999 APADANSEE---VTEILLTAARRCSLVLDNPAPEVFLVDLQQ-GIQIFELRIYAA----EMGHRMPLRHEIHQLILAGFR 1070 (1109)
T ss_pred eCCCCCHHH---HHHHHHHHHHhCccccCCCCCEEEEEecCC-CceEEEEEEEEc----ChhhHHHHHHHHHHHHHHHHH
Confidence 999999999 6777999999999987 6899999999998 888888887763 345788999999999999999
Q ss_pred HcCCcccCCCeeEEeccCCC
Q 004039 750 ELEINYSLLPQQVHLHHIGT 769 (777)
Q Consensus 750 e~GI~~~~P~~~V~l~~~~~ 769 (777)
++||++|+|+++||+.+.+.
T Consensus 1071 ~~GIeIPfPq~~v~i~~~~~ 1090 (1109)
T PRK10929 1071 EHGIDMPFPPFQMRLESLGG 1090 (1109)
T ss_pred HCCCcCCCCCeEEEeecCCC
Confidence 99999999999999987643
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=1.2e-32 Score=279.69 Aligned_cols=203 Identities=29% Similarity=0.438 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEe
Q 004039 549 KLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMN 628 (777)
Q Consensus 549 ~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~ 628 (777)
+++.++++++++++++.++|++.+++++++|++++++||++|++++|++ ||+++++++||++||||+|+|..|+|++|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhcC
Confidence 6788889999999999999999999999999999999999999999976 557788899999999999999999999999
Q ss_pred eeEEEEEecCCcEEEEecccccCCcEEeecC-CCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCCC-CCcEEEE
Q 004039 629 ILTTIFLKLSNEKISYPNSVLATKPISNYNR-SPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWH-PNHSVVV 706 (777)
Q Consensus 629 Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sR-S~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~~-p~~~V~v 706 (777)
|++|+++++||+.++|||+.+.++.|.|+|| ++.++..+.+.+++++|+++++++.+.+.+.+++++.... +.+.+.+
T Consensus 81 l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (206)
T PF00924_consen 81 LRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVVV 160 (206)
T ss_dssp SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEEE
T ss_pred cceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEEE
Confidence 9999999999999999999999999999999 8889999999999999999999999999999999998874 7788889
Q ss_pred EEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcc
Q 004039 707 KEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINY 755 (777)
Q Consensus 707 ~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~ 755 (777)
.++++ ++++++++++++. +++.+++..|++++.++++.|+++||++
T Consensus 161 ~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 161 DEIGD-SSLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEE-S-SSEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccC-CceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 98888 8999999988765 4578889999999999999999999975
No 6
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.98 E-value=3.7e-30 Score=300.79 Aligned_cols=216 Identities=16% Similarity=0.141 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECC
Q 004039 540 TKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDG 619 (777)
Q Consensus 540 ~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg 619 (777)
.++....+.+++.+++++++++++|..+|++++++++++|++|+++||++|++++|++ ||+||++++||+|||+|+++|
T Consensus 506 ~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i-sGi~Il~e~pf~vGD~I~v~g 584 (741)
T PRK11465 506 TRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII-TGVFIQFENGMNTGDLVTIGP 584 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999955 779999999999999999999
Q ss_pred eeEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCC---
Q 004039 620 VPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSL--- 696 (777)
Q Consensus 620 ~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~--- 696 (777)
++|+||+|++++|++|++||..++|||+.+.+ |.||+|. .++..+++.|+|++|++++.++.+++.+-+.++|.
T Consensus 585 ~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~~ 661 (741)
T PRK11465 585 LTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELMENEEIRG 661 (741)
T ss_pred eEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCccccc
Confidence 99999999999999999999999999999975 9999985 56788899999999999966654444433444554
Q ss_pred -CCCCCcEEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccC
Q 004039 697 -HWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHI 767 (777)
Q Consensus 697 -~~~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~ 767 (777)
...+...+.+.++++ +++.++++++.+ .+.+|..+.+++..+++.|+++||++|+|+. ++.+.
T Consensus 662 ~il~~p~~vgV~~lgd-Ssi~lrvr~~t~-----p~~qw~v~rel~~~IK~~Fde~GIeIP~~tv--~v~~~ 725 (741)
T PRK11465 662 LIIGEPNFAGIVGLTN-TAFTLRVSFTTL-----PLKQWTVRFALDSQVKKHFDLAGVRAPVQTY--QVLPA 725 (741)
T ss_pred cccCCCCeEEEEEecC-ceEEEEEEEEEC-----cchHHHHHHHHHHHHHHHHHHCCCCCCCCce--EeecC
Confidence 234445688999998 889999999763 4678899999999999999999999876554 55443
No 7
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.8e-30 Score=300.92 Aligned_cols=259 Identities=17% Similarity=0.239 Sum_probs=226.0
Q ss_pred CCccccHHHHHhhccHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHhHHHHhhccChhHHHHHHHHHHHHHHHHHHH
Q 004039 481 DSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTI 560 (777)
Q Consensus 481 g~~~l~~eDl~~f~~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~eRk~L~~Sl~d~~t~v~~L~~il~~iv~ii~i 560 (777)
|...|++-++.. +.-+| ..+....+.+.+|+......|-.+. ......+.+++.++++.++.
T Consensus 552 g~~~isl~~ll~---------avl~~---~~~~~l~r~~~~~L~~~vl~r~~~~------~G~r~~I~t~~~Y~~~~i~~ 613 (835)
T COG3264 552 GVESITLGALLQ---------AVLLF---LITYVLTRNLPGWLEVRVLQRLDLD------AGTRYSITTLLGYLLIAIGG 613 (835)
T ss_pred ceeEeeHHHHHH---------HHHHH---HHHHHHHHHHHHHHHHHHHHhcccC------cchHHHHHHHHHHHHHHHHH
Confidence 677777777663 11111 1144555566666666555554443 35667889999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCc
Q 004039 561 IVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNE 640 (777)
Q Consensus 561 ii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~ 640 (777)
++.++.+|++.+++-.++|++++++||++|++.+| |.||+.|++++||+|||+|++++.+|+|.+|+.+.|+++++||+
T Consensus 614 l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~N-FVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~ 692 (835)
T COG3264 614 LVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSN-FVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRK 692 (835)
T ss_pred HHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHH-hhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCC
Confidence 99999999999999999999999999999999999 67889999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCcEEeecCCC-CceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCC-CCCcEEEEEEecCCceEEEE
Q 004039 641 KISYPNSVLATKPISNYNRSP-DMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHW-HPNHSVVVKEIENVNKIKIA 718 (777)
Q Consensus 641 ~V~IPNS~L~t~~I~N~sRS~-~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~-~p~~~V~v~~i~d~~~l~l~ 718 (777)
.|++||+.+.+..+.||+.++ ..+..+.++++|++|+++ +++.+.+..+++|++. +|+|.|.+.++++ +.+++.
T Consensus 693 ~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~---V~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~-s~L~fE 768 (835)
T COG3264 693 EVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPEL---VRELLLEAAREHPRVLKDPAPEVFFTAFGA-SSLDFE 768 (835)
T ss_pred eEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHH---HHHHHHHHHHhCCCccCCCCCeeEeecccc-cceeEE
Confidence 999999999999999999776 578999999999999999 6888999999999997 7999999999999 999999
Q ss_pred EEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEecc
Q 004039 719 LYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHH 766 (777)
Q Consensus 719 v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~ 766 (777)
++++.. +...+...++++...|.+.|+|+||++|+|+++|++++
T Consensus 769 Lr~~v~----~~~~~~~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~~ 812 (835)
T COG3264 769 LRVYVA----ELGDRMPVRSELNRAILDRFRENGIEIPFPQREVRLKN 812 (835)
T ss_pred EEEEee----ccccccchHHHHHHHHHHHHHHcCCCCCCchHheEecC
Confidence 998874 45556669999999999999999999999999999997
No 8
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.9e-29 Score=266.98 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEEC-CeeEEE
Q 004039 546 QLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVD-GVPLLV 624 (777)
Q Consensus 546 ~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Id-g~~G~V 624 (777)
.+.++..++++++++++++..+|++.+++++++|.+|+++||++|++++|++ +|+|+.++|||++||+|+++ +..|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~-~Gi~il~~~~f~vGD~I~i~~~~~G~V 164 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPFKVGDWIEIGSGVEGTV 164 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHhheecCcCcCCEEEECCCceEEE
Confidence 7899999999999999999999999999999999999999999999999965 66888889999999999999 799999
Q ss_pred EEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCC--CCCc
Q 004039 625 EEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHW--HPNH 702 (777)
Q Consensus 625 eeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~--~p~~ 702 (777)
++|++++|+++++||+.+++||+.+.+..|.|++|.+.++..+.+.|+|++|+++ +++.+++.++..+.+. .|.+
T Consensus 165 ~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~ 241 (316)
T COG0668 165 EDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEK---ALKILKEVLEELPEVLKIEPEP 241 (316)
T ss_pred EEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHH---HHHHHHHHHHhcccccccCCCc
Confidence 9999999999999999999999999999999999998888999999999999999 5666777777777775 7889
Q ss_pred EEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccCCC
Q 004039 703 SVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGT 769 (777)
Q Consensus 703 ~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~~~ 769 (777)
.+.+.++++ +++.+.++++... ...+..++++...++++++++||++|+|++.++..+.+.
T Consensus 242 ~v~~~~~~~-~~~~i~v~~~t~~-----~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~~~ 302 (316)
T COG0668 242 VIGVSELGD-SGINIRVRFWTNP-----EDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGELEL 302 (316)
T ss_pred EEEEeeccC-CceEEEEEEEecc-----hhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCCCc
Confidence 999999999 9999999988743 337889999999999999999999999999999544433
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=92.82 E-value=0.23 Score=49.67 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhccCCCccccHHHHHhhc--------cHHHHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 467 RAAAFYIFRNVAQHDSKYIEEEDLLRFM--------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 467 ~alAr~If~~~~~~g~~~l~~eDl~~f~--------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
.+.+.+||..+-. |..++.+++|+.++ ..++...||.+||.|++|.|+..+|+.++..
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 3678899999987 99999999998876 3688999999999999999999999998874
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=92.18 E-value=0.32 Score=50.04 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHhHHHHhhc
Q 004039 465 EARAAAFYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHAL 537 (777)
Q Consensus 465 ~A~alAr~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~eRk~L~~Sl 537 (777)
++...|+++|..+..-+..+|..++|..-+ ..+-..-+|.++|.|++|.|++++|.+.+..+|.--......
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~- 139 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP- 139 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC-
Confidence 467899999999999889999999976532 256677889999999999999999999998888543332222
Q ss_pred cChhHHHHHHHHH
Q 004039 538 TDTKTAVKQLDKL 550 (777)
Q Consensus 538 ~d~~t~v~~L~~i 550 (777)
.+.++.....+.+
T Consensus 140 ~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 140 EDEETPEERVDKI 152 (193)
T ss_pred cccccHHHHHHHH
Confidence 2333444444443
No 11
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=91.87 E-value=0.15 Score=36.40 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=24.4
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 498 EVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 498 ea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
|+..+|..||.|++|.|+.+|+...+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999887643
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.21 E-value=0.44 Score=39.41 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=43.5
Q ss_pred HHHHHHhccCCCccccHHHHHhhcc-------H----HHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 471 FYIFRNVAQHDSKYIEEEDLLRFMI-------K----EEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 471 r~If~~~~~~g~~~l~~eDl~~f~~-------~----eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
+++|..+-..+..+|+.++|..++. . +.+..+|..+|.+.+|.|+.+++.+++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5788999888999999999987541 2 345667999999999999999998753
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.73 E-value=0.76 Score=37.67 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=46.3
Q ss_pred HHHHHHhccCCCccccHHHHHhhc-----cHHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 471 FYIFRNVAQHDSKYIEEEDLLRFM-----IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 471 r~If~~~~~~g~~~l~~eDl~~f~-----~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
+.+|..+...+..+|+.+++..++ .++++...|..+|.+.+|.|+.+++...+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467888877778899999988765 56788999999999999999999988776554
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=90.18 E-value=1.5 Score=39.63 Aligned_cols=64 Identities=5% Similarity=0.095 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcc-CCCccccHHHHHhhc--------cH-HHHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 004039 465 EARAAAFYIFRNVAQ-HDSKYIEEEDLLRFM--------IK-EEVDLVFPLIEGWDKGQIDRKALTDWVVKVYN 528 (777)
Q Consensus 465 ~A~alAr~If~~~~~-~g~~~l~~eDl~~f~--------~~-eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~ 528 (777)
.|..--+.+|..+.. .|..+|+.++|...+ .. +++...|.-+|.|++|.|+.++|...+..+..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 456677889999998 889999999987754 23 67889999999999999999999887776543
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.57 E-value=1.6 Score=39.40 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcc-CCCc-cccHHHHHhhccH------------HHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 465 EARAAAFYIFRNVAQ-HDSK-YIEEEDLLRFMIK------------EEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 465 ~A~alAr~If~~~~~-~g~~-~l~~eDl~~f~~~------------eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
.|-.-++++|..+.. .|.. +|+.++|...+.. +++..++.-+|.+++|.|+.++|...+..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 466778889999995 4654 6999999887632 468899999999999999999998877654
No 16
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=88.19 E-value=1.7 Score=39.20 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhc-cCCCc-cccHHHHHhhccH------------HHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 466 ARAAAFYIFRNVA-QHDSK-YIEEEDLLRFMIK------------EEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 466 A~alAr~If~~~~-~~g~~-~l~~eDl~~f~~~------------eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
|-..-..+|..+. ..|.. +|+.++|..++.. .+++..|.-+|.|.+|.|+.+++..++..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4455577888844 44644 9999999988744 4688999999999999999999998887654
No 17
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=88.05 E-value=2 Score=37.80 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcc--CCCccccHHHHHhhcc------------HHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 466 ARAAAFYIFRNVAQ--HDSKYIEEEDLLRFMI------------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 466 A~alAr~If~~~~~--~g~~~l~~eDl~~f~~------------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
...-.+.+|..+.. .|..+|+.++|..++. .+++...|..+|.+.+|.|+.+++...+....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34557788999988 6888999999887652 57789999999999999999999988877653
No 18
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=87.92 E-value=2 Score=38.30 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhccCC--CccccHHHHHhhcc------------HHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 465 EARAAAFYIFRNVAQHD--SKYIEEEDLLRFMI------------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 465 ~A~alAr~If~~~~~~g--~~~l~~eDl~~f~~------------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
+|-.-...+|...+..+ ..+|+.++|...+. ++++...|..+|.+.+|.|+.++|...+...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35556678899998753 56999999987663 6789999999999999999999998877654
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=87.74 E-value=2.1 Score=38.51 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccCCCccccHHHHHhhc-----cHHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 467 RAAAFYIFRNVAQHDSKYIEEEDLLRFM-----IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 467 ~alAr~If~~~~~~g~~~l~~eDl~~f~-----~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
..-.+.+|..+...+..+|+.+++.+.+ .++++...|..+|.+.+|.|+.++|...+..+.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 3466788999988788899999998865 467889999999999999999999988776654
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=87.60 E-value=1.3 Score=43.12 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCccccHHHHHhhcc------------HHHHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 004039 470 AFYIFRNVAQHDSKYIEEEDLLRFMI------------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYN 528 (777)
Q Consensus 470 Ar~If~~~~~~g~~~l~~eDl~~f~~------------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~ 528 (777)
.+.++..+-..|...|..++|...+. .++..+||.+||.|++|.|+.++|+..+.+...
T Consensus 46 l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 46 LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 45566667767888899999887553 238899999999999999999999998887653
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=86.69 E-value=1.5 Score=39.32 Aligned_cols=59 Identities=7% Similarity=0.190 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcc-CC-CccccHHHHHhhc----------cHHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 468 AAAFYIFRNVAQ-HD-SKYIEEEDLLRFM----------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 468 alAr~If~~~~~-~g-~~~l~~eDl~~f~----------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
..-=.+|..++. .| ..+|+.++|..++ .++++.+.|.-+|.|++|.|+.++|...+.++
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 344467888886 45 5699999987765 35778999999999999999999998877764
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=85.54 E-value=3 Score=37.23 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhc-cCCCc-cccHHHHHhhcc------------HHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 466 ARAAAFYIFRNVA-QHDSK-YIEEEDLLRFMI------------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 466 A~alAr~If~~~~-~~g~~-~l~~eDl~~f~~------------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
|..-.+.+|..+. ..|.. .|+.++|...+. +++++.+|..+|.+.+|.|+.+++...+..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 5566788999996 77888 499999877653 4678999999999999999999998766554
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=83.86 E-value=2.7 Score=32.57 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=40.9
Q ss_pred HHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHH
Q 004039 471 FYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDW 522 (777)
Q Consensus 471 r~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~ 522 (777)
+.+|..+...+...|..+++...+ ..+++..+|..+|.+++|.|+.+++...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 456777766667789999987755 3467888999999999999999988764
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.77 E-value=4.5 Score=36.29 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcc-CC-CccccHHHHHhhc------------cHHHHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 465 EARAAAFYIFRNVAQ-HD-SKYIEEEDLLRFM------------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 465 ~A~alAr~If~~~~~-~g-~~~l~~eDl~~f~------------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
.|..-.+.+|..+.. .| ..+|+.++|...+ ..+++...|..+|.+++|.|+.+++...+..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 345566778888876 55 5899999988654 3367889999999999999999999776543
No 25
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=82.50 E-value=2.6 Score=43.23 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=50.5
Q ss_pred HHHHHHHHHhccCCCcc-ccHHHHHhhc--------cHHHHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 004039 468 AAAFYIFRNVAQHDSKY-IEEEDLLRFM--------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYN 528 (777)
Q Consensus 468 alAr~If~~~~~~g~~~-l~~eDl~~f~--------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~ 528 (777)
-++.+|+..+...+... |.+++|.+.+ ..+...-||.++|.+.+|.|+++++...+...+.
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 47889999998766666 9999998854 2346788999999999999999999998887664
No 26
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=82.27 E-value=2.3 Score=48.41 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccccHHHHHhhccHHHHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 004039 461 TSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYN 528 (777)
Q Consensus 461 ~s~~~A~alAr~If~~~~~~g~~~l~~eDl~~f~~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~ 528 (777)
.+....+...+.+|..+-..|..+|+.+++.. ++..|..||.|++|.|+.++|...+...|+
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 33345678889999999999999999999853 678999999999999999999998887764
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=82.12 E-value=2.3 Score=33.86 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=33.2
Q ss_pred cccHHHHHhh--------ccHHHHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 484 YIEEEDLLRF--------MIKEEVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 484 ~l~~eDl~~f--------~~~eea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
.|+.++|..+ +.++++..+|..+|.+.+|.|+.+++...+.+
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4556665552 45678999999999999999999999887653
No 28
>PTZ00184 calmodulin; Provisional
Probab=81.22 E-value=3.7 Score=38.59 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHHHHHhccCCCccccHHHHHhhcc--------HHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 469 AAFYIFRNVAQHDSKYIEEEDLLRFMI--------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 469 lAr~If~~~~~~g~~~l~~eDl~~f~~--------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
..+++|..+...+...+..++|..++. .+.+..+|..+|.+++|.|+.+++..++..+
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 567888888887888999999987543 2467899999999999999999998887653
No 29
>PTZ00183 centrin; Provisional
Probab=80.89 E-value=3.9 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHHH
Q 004039 469 AAFYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWVV 524 (777)
Q Consensus 469 lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~vv 524 (777)
..+.+|..+...+..+|+.++|..++ ..+++..+|..||.+++|.|+.+++...+.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 45788998888888899999988764 467889999999999899999998876543
No 30
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=79.44 E-value=1.7 Score=31.00 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHH
Q 004039 499 VDLVFPLIEGWDKGQIDRKALTDWVV 524 (777)
Q Consensus 499 a~~af~lfd~d~~G~Is~~~l~~~vv 524 (777)
-..+|..+|.|.+|.|+.++|...+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 35789999999999999999988765
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=79.35 E-value=3.7 Score=41.08 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=46.0
Q ss_pred HHHHHhccCCCccccHHHHHhhc--------cHHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 472 YIFRNVAQHDSKYIEEEDLLRFM--------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 472 ~If~~~~~~g~~~l~~eDl~~f~--------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
++-.-+.+.|...|+.+||.+.+ +.+++..+|.+||.|.+|.|+...|+....+..
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC
Confidence 34455666788999999998864 568999999999999999999999988776643
No 32
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=78.83 E-value=1.5 Score=30.12 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHhhhhhcccccchhhHHHHHHH
Q 004039 500 DLVFPLIEGWDKGQIDRKALTDW 522 (777)
Q Consensus 500 ~~af~lfd~d~~G~Is~~~l~~~ 522 (777)
+.+|..+|.|++|.|+.+|+...
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45899999999999999999874
No 33
>PLN02964 phosphatidylserine decarboxylase
Probab=78.29 E-value=4 Score=49.29 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 468 AAAFYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 468 alAr~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
..++++|..+...|...|..++|..++ .+++...+|..||.|++|.|+.++|+..+..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 458889998888888999999998754 3567999999999999999999999987766
No 34
>PTZ00184 calmodulin; Provisional
Probab=78.11 E-value=5.4 Score=37.51 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=47.4
Q ss_pred HHHHHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 468 AAAFYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 468 alAr~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
..++.+|..+...|..+|+.+++..++ ..+++..+|..+|.+++|.|+.+++...+
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 456788999988889999999998764 56788999999999999999999887654
No 35
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=77.16 E-value=9.4 Score=34.24 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhc-cCCCc-cccHHHHHhhcc------------HHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 466 ARAAAFYIFRNVA-QHDSK-YIEEEDLLRFMI------------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 466 A~alAr~If~~~~-~~g~~-~l~~eDl~~f~~------------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
|-.--+.+|..+. ..|.. +|..++|...+. +++++..+.-+|.+++|.|..+++...+..+.
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4556678899997 56777 599999876543 35689999999999999999999988776543
No 36
>PTZ00183 centrin; Provisional
Probab=74.48 E-value=8.4 Score=36.77 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCCccccHHHHHhhcc--------HHHHHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 469 AAFYIFRNVAQHDSKYIEEEDLLRFMI--------KEEVDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 469 lAr~If~~~~~~g~~~l~~eDl~~f~~--------~eea~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
....+|..+...+...|..++|...+. .++...+|..+|.+++|.|+..++..++...
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 466778778777888899998876542 4567899999999999999999999888653
No 37
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.26 E-value=25 Score=42.94 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=5.9
Q ss_pred CCcccccccccCC
Q 004039 56 EPVTAGFAAKSVP 68 (777)
Q Consensus 56 ~~~~~~~~~~~~~ 68 (777)
.+|++|..+..||
T Consensus 533 ~pp~gG~g~pppP 545 (1102)
T KOG1924|consen 533 LPPTGGTGPPPPP 545 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 3344454444444
No 38
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=69.09 E-value=13 Score=35.34 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCCCccccHHHHHhhc---cHHHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 466 ARAAAFYIFRNVAQHDSKYIEEEDLLRFM---IKEEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 466 A~alAr~If~~~~~~g~~~l~~eDl~~f~---~~eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
-+.-++-.|..+-.-+..+|+.++|..+. ....+...|..+|.+.+|.||.+++...+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45667788888888888899999998763 24567889999999999999999998766
No 39
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=62.07 E-value=39 Score=41.35 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHhhHHHH
Q 004039 178 GPGEDDEEIYKKVKLIK 194 (777)
Q Consensus 178 ~~~d~de~~~~~~~~~~ 194 (777)
-.+++||-++++.++++
T Consensus 389 f~~~~De~Il~~lD~~~ 405 (830)
T KOG1923|consen 389 FHELNDEKILEALDFSR 405 (830)
T ss_pred hhhhhHHHHHHhhhHHH
Confidence 55889998999776643
No 40
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=59.76 E-value=32 Score=32.01 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCCCccccHHHHHhhc-----cHHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 467 RAAAFYIFRNVAQHDSKYIEEEDLLRFM-----IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 467 ~alAr~If~~~~~~g~~~l~~eDl~~f~-----~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
++-...+|..+. ++..+|+-++...|| +.+....++.+-|.|.+|.++.++|.-.+.=++
T Consensus 9 ~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 9 KQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 456778998876 577899999998876 468889999999999999999999877665443
No 41
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=58.24 E-value=7.2 Score=32.07 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=25.9
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 499 VDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 499 a~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
...+|..||.|++|.|+.+++..++....
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999988765
No 42
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=57.97 E-value=59 Score=34.73 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCchhhhhhhhccccccccCCCCCCCCCCCCCCCCCccc
Q 004039 80 SSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSYIDDNAFD 127 (777)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ksr~~~~~~~~~~~~~ 127 (777)
-.|+.=-|+|++.+ ..--+.+.-++|++| +++|..+.++
T Consensus 75 ~~p~~~~ki~~~ss---~~~d~~~~d~vfp~~------~a~p~~tslp 113 (262)
T KOG4812|consen 75 ILPPPYSKIPQESS---DIQDGAMFDSVFPNL------SAKPVATSLP 113 (262)
T ss_pred CCCCccccccccch---hhhchhhccccCCCC------CCCCccccCc
Confidence 34444456777763 445556666777776 3446666655
No 43
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=57.14 E-value=9.1 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHH
Q 004039 499 VDLVFPLIEGWDKGQIDRKALTDWVV 524 (777)
Q Consensus 499 a~~af~lfd~d~~G~Is~~~l~~~vv 524 (777)
...+|..+|.+.+|.|+.+++..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 35678889999899999998887664
No 44
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=56.12 E-value=16 Score=24.87 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=16.7
Q ss_pred CccCCcEEEE-----CCeeEEEEEEe
Q 004039 608 PFDVGDRCVV-----DGVPLLVEEMN 628 (777)
Q Consensus 608 PFdVGDrV~I-----dg~~G~VeeI~ 628 (777)
+|.+||.|.| .|..|+|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5789999999 35678888874
No 45
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=55.09 E-value=18 Score=31.53 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred HHHHHHhccCCCccccHHHHHhhccH
Q 004039 471 FYIFRNVAQHDSKYIEEEDLLRFMIK 496 (777)
Q Consensus 471 r~If~~~~~~g~~~l~~eDl~~f~~~ 496 (777)
+.||.+++. +..+++.++|.+|+..
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~ 27 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLRE 27 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHH
Confidence 578999987 8999999999999954
No 46
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=53.94 E-value=23 Score=35.54 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHHH
Q 004039 471 FYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWVV 524 (777)
Q Consensus 471 r~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~vv 524 (777)
+..|.-+-.-+..+|...++.+++ .+++++..+..+|.|++|.|+.++++..+.
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 344666667778899999999876 578999999999999999999999987654
No 47
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=53.94 E-value=59 Score=40.00 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.2
Q ss_pred HHhhcc
Q 004039 217 CLVASL 222 (777)
Q Consensus 217 ~l~~~~ 222 (777)
.+++|+
T Consensus 706 IflgS~ 711 (1102)
T KOG1924|consen 706 IFLGSF 711 (1102)
T ss_pred HHHhhc
Confidence 333333
No 48
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=52.57 E-value=55 Score=30.93 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCccCCcEEEE-CCeeEEEEEEeeeEEEEEecCCcEEEE
Q 004039 607 HPFDVGDRCVV-DGVPLLVEEMNILTTIFLKLSNEKISY 644 (777)
Q Consensus 607 hPFdVGDrV~I-dg~~G~VeeI~Ll~Tvfrt~Dg~~V~I 644 (777)
.-..+||+|.. +|..|+|.+|+=-+.++...+|..+.+
T Consensus 37 ~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 34689999975 889999999985444455445555543
No 49
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=50.92 E-value=29 Score=33.80 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=46.2
Q ss_pred HHHHHHHHHhccCCCccccHHHHHhhc-------cHHHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 468 AAAFYIFRNVAQHDSKYIEEEDLLRFM-------IKEEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 468 alAr~If~~~~~~g~~~l~~eDl~~f~-------~~eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
.--+.+|+-+-..|..+|+.++|..++ ..++....+..+|.|++|.|..+++...+
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 355777888888899999999999876 45788999999999999999877765543
No 50
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=50.19 E-value=49 Score=38.27 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHH------HHHhhhhHHHHHHHHHhhhh
Q 004039 573 KVIVFLSSQFVAA------AFVFGTTCRTIFEAIIFVFV 605 (777)
Q Consensus 573 ~lla~lgs~~Lal------gFafq~tl~nif~SgIFIfv 605 (777)
.+++..|.+++.+ .|...+.+++++.++|=+|+
T Consensus 171 yl~tlAG~iLLpFGg~~wTsf~Aek~lg~Vis~GiKLmV 209 (440)
T PRK13875 171 KLTTLAGFVLIPFALFGKTAFLAERVLGNVVSSGIKVLV 209 (440)
T ss_pred HHHHhhHHHhhccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665 34566777777777765554
No 51
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=49.25 E-value=35 Score=35.17 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHhccC-CCccccHHHHHhhc---cHHHHHHhhhhhcccccch-hhHHHHHHHHHHH
Q 004039 461 TSEMEARAAAFYIFRNVAQH-DSKYIEEEDLLRFM---IKEEVDLVFPLIEGWDKGQ-IDRKALTDWVVKV 526 (777)
Q Consensus 461 ~s~~~A~alAr~If~~~~~~-g~~~l~~eDl~~f~---~~eea~~af~lfd~d~~G~-Is~~~l~~~vv~i 526 (777)
.|..|.++|..+ |.++..+ ++.+++.++|.... .+--+..++..|+.+.+|. |+.+++.+.+.-.
T Consensus 27 fs~~EI~~L~~r-F~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 27 FSANEIERLYER-FKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred cCHHHHHHHHHH-HHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh
Confidence 355667666655 9999998 89999999998754 3456889999999998899 9999998876543
No 52
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=47.61 E-value=92 Score=38.60 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=39.9
Q ss_pred eeccchhhHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004039 279 VHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLL 340 (777)
Q Consensus 279 v~~l~~~v~~~~W~~~~l~~~~~l~~~~v~~~~~~~~~l~~v~kiL~~~lv~a~~~l~ek~l 340 (777)
+..++ ++.+++|++..+.+|..+-....-.+..-...++.+.++++.++++.+.|.+-+.+
T Consensus 427 l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ 487 (741)
T PRK11465 427 LKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASL 487 (741)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 78889999999999985422111011122456677888888888888888775533
No 53
>COG5346 Predicted membrane protein [Function unknown]
Probab=46.66 E-value=1.2e+02 Score=29.21 Aligned_cols=14 Identities=36% Similarity=0.226 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhh
Q 004039 577 FLSSQFVAAAFVFG 590 (777)
Q Consensus 577 ~lgs~~LalgFafq 590 (777)
+.+++.+|++|+++
T Consensus 115 ~Gtv~alAlaFv~~ 128 (136)
T COG5346 115 GGTVFALALAFVIG 128 (136)
T ss_pred cchHHHHHHHHHHh
Confidence 33445566666665
No 54
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.04 E-value=50 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.4
Q ss_pred CCccCCcEEE-ECCeeEEEEEEeeeEEEEEecCCcEEEE
Q 004039 607 HPFDVGDRCV-VDGVPLLVEEMNILTTIFLKLSNEKISY 644 (777)
Q Consensus 607 hPFdVGDrV~-Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~I 644 (777)
.-..+||+|. ++|..|+|.+|+=-+.++...+|..+.+
T Consensus 51 ~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~ 89 (106)
T PRK05585 51 SSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKI 89 (106)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3468999995 5899999999987555566666755554
No 55
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=44.30 E-value=70 Score=31.85 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHhccCCCccccHHHHHhhc--------cHHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 469 AAFYIFRNVAQHDSKYIEEEDLLRFM--------IKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 469 lAr~If~~~~~~g~~~l~~eDl~~f~--------~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
.-+||-.-|...|+..++++||++.| ++..|.-||...|.|+++.|-...+...+...-
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT 138 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT 138 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh
Confidence 44677777888999999999998844 234678899999999999998888888776654
No 56
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=43.13 E-value=14 Score=34.93 Aligned_cols=6 Identities=50% Similarity=1.027 Sum_probs=3.6
Q ss_pred CCCCCC
Q 004039 142 SPYRTS 147 (777)
Q Consensus 142 ~~~~~~ 147 (777)
-||||+
T Consensus 121 ipyrp~ 126 (150)
T PF06084_consen 121 IPYRPC 126 (150)
T ss_pred cCCCcc
Confidence 467664
No 57
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.47 E-value=70 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCccCCcEEEE-CCeeEEEEEEeeeEEEEEecCCcEEEE
Q 004039 607 HPFDVGDRCVV-DGVPLLVEEMNILTTIFLKLSNEKISY 644 (777)
Q Consensus 607 hPFdVGDrV~I-dg~~G~VeeI~Ll~Tvfrt~Dg~~V~I 644 (777)
.-..+||+|.. +|..|+|.+++=-+.++...+|..+.+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 44689999976 789999999986555555555555443
No 58
>PRK11281 hypothetical protein; Provisional
Probab=38.80 E-value=42 Score=43.41 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHheeeEEEEeccccccceeeeeeeccchhhHHHHHHHHHHHHHHHH
Q 004039 236 EVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLL 302 (777)
Q Consensus 236 ~lw~W~~~~~v~~~G~lv~~w~~~i~vflie~nfl~~kk~lyfv~~l~~~v~~~~W~~~~l~~~~~l 302 (777)
.++.-...+++++.|++++.++.+++-.++..+.-......| .+.+-+..++|++.+++++..+
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~~---~i~~li~y~I~~i~iliaL~~l 898 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTSY---AITTLLTYIIIAVGAVTAFSTL 898 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555666777777777665443222222222222223 3455566677777777776654
No 59
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=38.00 E-value=1.2e+02 Score=28.19 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=27.1
Q ss_pred ccCCcEEEE-CCeeEEEEEEeeeEEEEEecCCcEEEEe
Q 004039 609 FDVGDRCVV-DGVPLLVEEMNILTTIFLKLSNEKISYP 645 (777)
Q Consensus 609 FdVGDrV~I-dg~~G~VeeI~Ll~Tvfrt~Dg~~V~IP 645 (777)
...||.|.. +|..|+|.+|+=-+-++.-.||..+.+-
T Consensus 44 L~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 44 LKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFE 81 (97)
T ss_pred ccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEE
Confidence 579999976 7799999999876555554466666543
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=36.93 E-value=29 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=22.0
Q ss_pred HhhhhhcccccchhhHHHHHHHHHH
Q 004039 501 LVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 501 ~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
.+|..+|.+++|.|+.++++..+..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5889999999999999999987754
No 61
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=36.30 E-value=1.5e+02 Score=27.09 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhccCCCccccHHHHHhhc--------c----HHHHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 466 ARAAAFYIFRNVAQHDSKYIEEEDLLRFM--------I----KEEVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 466 A~alAr~If~~~~~~g~~~l~~eDl~~f~--------~----~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
|-..--.+|..++. +..+|+..+|...+ . ++.++.+|.-+|.+.+|.++.+|+...|..+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 33444567888883 45588888876643 2 45678999999999999999999988777654
No 62
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=35.53 E-value=51 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCccCCcEEEEC---CeeEEEEEEeeeEEEEE
Q 004039 607 HPFDVGDRCVVD---GVPLLVEEMNILTTIFL 635 (777)
Q Consensus 607 hPFdVGDrV~Id---g~~G~VeeI~Ll~Tvfr 635 (777)
...-|||||.++ +..+.|+++--+.+.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 456899999874 45678888877777664
No 63
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=34.27 E-value=37 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHhhhhhc-ccccc-hhhHHHHHHHHHH
Q 004039 497 EEVDLVFPLIE-GWDKG-QIDRKALTDWVVK 525 (777)
Q Consensus 497 eea~~af~lfd-~d~~G-~Is~~~l~~~vv~ 525 (777)
++..++|.+|| .+++| .|+.++|+..+..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 45678999997 99999 5999999988754
No 64
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=34.19 E-value=45 Score=27.91 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.3
Q ss_pred ccCCcEEEE-CCeeEEEEEEe
Q 004039 609 FDVGDRCVV-DGVPLLVEEMN 628 (777)
Q Consensus 609 FdVGDrV~I-dg~~G~VeeI~ 628 (777)
-+|||.|++ +|.+|.|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 479999999 78899998876
No 65
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=33.88 E-value=58 Score=26.91 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHH
Q 004039 322 WTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDR 356 (777)
Q Consensus 322 kiL~~~lv~a~~~l~ek~liq~iA~sfH~~~y~dR 356 (777)
+.|..++++++++=.-|-+|+-||..|-.+-|+.+
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 45778889999999999999999999999988876
No 66
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=33.83 E-value=41 Score=27.69 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.7
Q ss_pred ccCCcEEEE--CCeeEEEEEEe
Q 004039 609 FDVGDRCVV--DGVPLLVEEMN 628 (777)
Q Consensus 609 FdVGDrV~I--dg~~G~VeeI~ 628 (777)
|.+||.|.+ +|-.++|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999999 78999999874
No 67
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=33.61 E-value=47 Score=29.68 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.3
Q ss_pred HHHHhhhhhcc-cc-cchhhHHHHHHHHHH
Q 004039 498 EVDLVFPLIEG-WD-KGQIDRKALTDWVVK 525 (777)
Q Consensus 498 ea~~af~lfd~-d~-~G~Is~~~l~~~vv~ 525 (777)
+...+|..||. |+ +|.|+.++++..+..
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 45679999997 86 699999999987754
No 68
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=33.44 E-value=37 Score=30.52 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=23.6
Q ss_pred HHHHhhhhhc-ccccc-hhhHHHHHHHHHHH
Q 004039 498 EVDLVFPLIE-GWDKG-QIDRKALTDWVVKV 526 (777)
Q Consensus 498 ea~~af~lfd-~d~~G-~Is~~~l~~~vv~i 526 (777)
.+..+|..|| .|++| .|+.++|+..+...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 4567899999 57898 59999999987653
No 69
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.13 E-value=1.6e+02 Score=29.75 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 004039 577 FLSSQFVAAAF 587 (777)
Q Consensus 577 ~lgs~~LalgF 587 (777)
.+|.+++|+|.
T Consensus 40 ~lg~~~lAlg~ 50 (191)
T PF04156_consen 40 ILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHHH
Confidence 34444455444
No 70
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=31.99 E-value=42 Score=30.07 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHH
Q 004039 498 EVDLVFPLIEGWDKGQIDRKALTDWVVK 525 (777)
Q Consensus 498 ea~~af~lfd~d~~G~Is~~~l~~~vv~ 525 (777)
+...+|..||.+++|.|+.++++..+..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 4678999999999999999999887754
No 71
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.51 E-value=1.9e+02 Score=38.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcc
Q 004039 733 KNNRRSALITELKKFFEELEINY 755 (777)
Q Consensus 733 r~~rRs~l~~~I~k~l~e~GI~~ 755 (777)
+..+-..+-..|...|....|++
T Consensus 928 kvs~I~~La~dLA~aL~a~~vRI 950 (1355)
T PRK10263 928 KAARISNLSRDLARSLSTVAVRV 950 (1355)
T ss_pred CHHHHHHHHHHHHHHhcCCccce
Confidence 33344444445555555444444
No 72
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=31.45 E-value=70 Score=23.14 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCcEEEE-----CCeeEEEEEEee
Q 004039 611 VGDRCVV-----DGVPLLVEEMNI 629 (777)
Q Consensus 611 VGDrV~I-----dg~~G~VeeI~L 629 (777)
+||+|.| .|..|.|.+|.-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 6999999 568999999864
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=30.15 E-value=48 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.8
Q ss_pred HHHHHhhhhhcc--cccchhhHHHHHHHHHH
Q 004039 497 EEVDLVFPLIEG--WDKGQIDRKALTDWVVK 525 (777)
Q Consensus 497 eea~~af~lfd~--d~~G~Is~~~l~~~vv~ 525 (777)
++...+|..||. +++|.|+.+++...+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 356789999999 89999999999987754
No 74
>PF15325 MRI: Modulator of retrovirus infection
Probab=29.29 E-value=75 Score=29.40 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=7.0
Q ss_pred CCCCCHHHHHhh
Q 004039 179 PGEDDEEIYKKV 190 (777)
Q Consensus 179 ~~d~de~~~~~~ 190 (777)
++|+|||.+|-|
T Consensus 89 eeeEdeD~lKYV 100 (106)
T PF15325_consen 89 EEEEDEDALKYV 100 (106)
T ss_pred ccchhhHHHHHH
Confidence 345667767643
No 75
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=29.26 E-value=34 Score=28.25 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=10.1
Q ss_pred cCCccCCcEEEECCeeEEE
Q 004039 606 MHPFDVGDRCVVDGVPLLV 624 (777)
Q Consensus 606 ~hPFdVGDrV~Idg~~G~V 624 (777)
..||+.||||.+-+..|.-
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~ 21 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRK 21 (54)
T ss_dssp --S--TT-EEEEEETT--E
T ss_pred cCCCCCCCEEEEccCCCCe
Confidence 4699999999997766653
No 76
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.65 E-value=77 Score=41.06 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=43.2
Q ss_pred cccccceeeeh-------------hhHHHHHHHHHHHHhHHHHHHHheeeEEEEeccccccceeeeeeeccchhhHHHHH
Q 004039 225 DELEKSVIWGL-------------EVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIW 291 (777)
Q Consensus 225 ~~~~~~~~w~~-------------~lw~W~~~~~v~~~G~lv~~w~~~i~vflie~nfl~~kk~lyfv~~l~~~v~~~~W 291 (777)
.-|.+.++|.. .++.-.+.+++++.|+.++.|+.+++--.+....-+.....|| +.+-+..++|
T Consensus 808 s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~I~ 884 (1109)
T PRK10929 808 GFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYLLM 884 (1109)
T ss_pred HHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHHHH
Confidence 45788889873 5676666678888899888888776633221111111122233 3344455666
Q ss_pred HHHHHHHHHHH
Q 004039 292 LALVLITWVLL 302 (777)
Q Consensus 292 ~~~~l~~~~~l 302 (777)
++.+++++..+
T Consensus 885 ~ig~l~~L~~l 895 (1109)
T PRK10929 885 LIGGLVGFSMI 895 (1109)
T ss_pred HHHHHHHHHHc
Confidence 66666555543
No 77
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.98 E-value=75 Score=27.38 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHhhhhHHHHHHHHHhhhhcCCccCCcEEEE-CCeeEEEEEEeeeEEE
Q 004039 586 AFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVV-DGVPLLVEEMNILTTI 633 (777)
Q Consensus 586 gFafq~tl~nif~SgIFIfv~hPFdVGDrV~I-dg~~G~VeeI~Ll~Tv 633 (777)
.|.+++.+-. +.+. ..+.--.|||.|++ ||..|.|++++=-+..
T Consensus 5 ~~~~~~a~~~-~~~~---~~m~~a~vgniief~dgl~g~vek~nensvi 49 (81)
T COG4873 5 AKYFQKALLC-LKER---KLMKIAKVGNIIEFKDGLTGVVEKVNENSVI 49 (81)
T ss_pred HHHHHhhhhh-hcee---eEeeeeeccceEEEcccceeeeeeecCCcEE
Confidence 3555555544 3342 23556789999998 8999999999855433
No 78
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=26.77 E-value=1.1e+02 Score=31.58 Aligned_cols=57 Identities=18% Similarity=0.416 Sum_probs=32.3
Q ss_pred HhhcCCCcchhhHHHHHHHHHHHHhhcccccccccceeeehhhHH--HHHHHHHHHHhHH
Q 004039 195 EKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWK--WCLLVLVIFSGML 252 (777)
Q Consensus 195 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~w~~~lw~--W~~~~~v~~~G~l 252 (777)
..|.+++++++++.+++++.++-+.+... ..+.+..+=....|. ||+-++.+++|.+
T Consensus 32 ~~Ks~lk~l~~~h~ll~l~~~a~v~~~~L-~~i~~~~~p~p~~Wey~~~lS~ip~~~G~~ 90 (186)
T PF07086_consen 32 QLKSRLKKLILFHALLWLLMAAKVSVDIL-LEISELQIPSPYQWEYIWCLSLIPSLLGLL 90 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCChhHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888877665543332 112222222223332 6666666677763
No 79
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.50 E-value=3.2e+02 Score=31.44 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHhhhhHHHHHH
Q 004039 318 DYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQT 369 (777)
Q Consensus 318 ~~v~kiL~~~lv~a~~~l~ek~liq~iA~sfH~~~y~dRI~es~~~~~~L~~ 369 (777)
++.+-+++.+++..++++++.++..+...++|.+.||.+=+--+-+-+..+-
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra~~~~~eg 91 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRARKALNEG 91 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888899999999999999999999999965554444444443
No 80
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=26.11 E-value=61 Score=29.23 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=24.3
Q ss_pred HHHhhhhhcc-cccchhhHHHHHHHHHH
Q 004039 499 VDLVFPLIEG-WDKGQIDRKALTDWVVK 525 (777)
Q Consensus 499 a~~af~lfd~-d~~G~Is~~~l~~~vv~ 525 (777)
...+|..||. +++|.|+.++|+..+..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 4679999999 99999999999998876
No 81
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=26.10 E-value=3.1e+02 Score=26.71 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEee
Q 004039 571 TTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNI 629 (777)
Q Consensus 571 ~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~L 629 (777)
...++.++|.-.++++++|.-.. +--+..+.|.|++....|.+.+-
T Consensus 35 aW~Vl~F~glev~~l~~a~~~~~-------------r~~~~~E~I~l~~~~~~~~~~~~ 80 (140)
T PF10003_consen 35 AWPVLPFAGLEVLALWYAFRRNY-------------RHARDYERITLSPDDLLVVRVDP 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------hhCcCcEEEEEeCCeeEEEEEcC
Confidence 35566666666666666665433 33456788888887766766653
No 82
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=26.03 E-value=1.4e+02 Score=25.10 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.9
Q ss_pred ccCCcEEEE------CCeeEEEEEEeeeEEEEEecCCcEEEEeccccc
Q 004039 609 FDVGDRCVV------DGVPLLVEEMNILTTIFLKLSNEKISYPNSVLA 650 (777)
Q Consensus 609 FdVGDrV~I------dg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~ 650 (777)
|++||.|+. ++....|.++|.=.-.=-.--|+.|.+|-+.+.
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDikikC~gCg~~imlpR~~fe 49 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADIKIKCLGCGRQIMLPRSKFE 49 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcEEEEECCCCCEEEEeHHHHH
Confidence 789999999 567889998886554333445788888866653
No 83
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=25.19 E-value=1.4e+02 Score=34.48 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHHHhccCCCccccHHHHHhhccHH--HHHHhhhhhcccccchhhHHHHHHHHHHHH
Q 004039 468 AAAFYIFRNVAQHDSKYIEEEDLLRFMIKE--EVDLVFPLIEGWDKGQIDRKALTDWVVKVY 527 (777)
Q Consensus 468 alAr~If~~~~~~g~~~l~~eDl~~f~~~e--ea~~af~lfd~d~~G~Is~~~l~~~vv~i~ 527 (777)
.+|+.+|.-.......-+..++|.+|+... +....|.-+|.+.||.|...|+.+.+.++.
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhC
Confidence 466677766655455567788888887543 445677777777888888888777766543
No 84
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=24.76 E-value=4.3e+02 Score=29.37 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=55.8
Q ss_pred HHHHHHhhcc-cccccccceeeehhhHHHHHHHHHHHHhHHHHHHHheeeEEEEeccccccceeeeeeeccchhhHHHHH
Q 004039 213 CTVGCLVASL-TWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIW 291 (777)
Q Consensus 213 ~~~~~l~~~~-~i~~~~~~~~w~~~lw~W~~~~~v~~~G~lv~~w~~~i~vflie~nfl~~kk~lyfv~~l~~~v~~~~W 291 (777)
|++++|++-. +|..+-+-..-.-|=|+|..|+ +..|.+---|...+++.-..... --.=|.+-||-. .-|
T Consensus 197 ~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lV--l~mGsi~~l~Gl~vl~~~~~~~~---~~~G~ilIGLGl----vCy 267 (347)
T PF10951_consen 197 CICTSLIALVATIARQIRNTYSEKERWKWPKLV--LVMGSISILWGLYVLLASSGPAN---NAPGYILIGLGL----VCY 267 (347)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHhhhhHHHH--HHHhhHHHHhhhheEEecCCccc---CCcceeeeehhh----HHH
Confidence 5666666433 4545555555666889998754 55677666677665544433322 223355555543 112
Q ss_pred HHHHHH-HHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 004039 292 LALVLI-TWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWL 335 (777)
Q Consensus 292 ~~~~l~-~~~~l~~~~v~~~~~~~~~l~~v~kiL~~~lv~a~~~l 335 (777)
.+..=+ ....+.++..+-. +.-..+. |...|.|+|++|.++=
T Consensus 268 SIsSKViLLA~vWr~~f~LA-nRIPlIP-V~TaL~CLFlaAFlfE 310 (347)
T PF10951_consen 268 SISSKVILLAKVWRREFKLA-NRIPLIP-VLTALACLFLAAFLFE 310 (347)
T ss_pred HHHHHHHHHHHHHHhhcchh-ccCCchH-HHHHHHHHHHHHHHHH
Confidence 211110 1111122222111 1122232 5568999999987653
No 85
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=24.13 E-value=19 Score=41.41 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHhccCC----CccccHHHHHhhccHHHHHHhhhhhcccccchhhHHHHHHHHH
Q 004039 473 IFRNVAQHD----SKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVV 524 (777)
Q Consensus 473 If~~~~~~g----~~~l~~eDl~~f~~~eea~~af~lfd~d~~G~Is~~~l~~~vv 524 (777)
||+.+-..| .+||-+-.++- .+...-+.||.+||.|+||.|.++|+.....
T Consensus 206 iF~~lg~~GLIsfSdYiFLlTlLS-~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 206 IFYKLGESGLISFSDYIFLLTLLS-IPERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred eEEEcCCCCeeeHHHHHHHHHHHc-cCcccceeeeeeeecCCCCcccHHHHHHHHH
No 86
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=23.29 E-value=1.8e+02 Score=30.19 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHHHhccCC-CccccHHHHHh----hcc----HHHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 470 AFYIFRNVAQHD-SKYIEEEDLLR----FMI----KEEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 470 Ar~If~~~~~~g-~~~l~~eDl~~----f~~----~eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
-+.+|++|...- .-.++.+++.. |++ ..-+..+|..||.+.||.|+.+++...+
T Consensus 28 i~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~al 90 (193)
T KOG0044|consen 28 IQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICAL 90 (193)
T ss_pred HHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 345566665522 34566666654 443 4568899999999999999998855544
No 87
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.70 E-value=2e+02 Score=27.32 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=25.6
Q ss_pred ccCCcEEE-ECCeeEEEEEEeee--EEEEEecCCcEEEEecc
Q 004039 609 FDVGDRCV-VDGVPLLVEEMNIL--TTIFLKLSNEKISYPNS 647 (777)
Q Consensus 609 FdVGDrV~-Idg~~G~VeeI~Ll--~Tvfrt~Dg~~V~IPNS 647 (777)
..+||+|. ++|..|+|.+|+-- +.++.. +|..+.+=-+
T Consensus 37 Lk~GD~VvT~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~r~ 77 (113)
T PRK06531 37 IQKGDEVVTIGGLYGTVDEVDTEAKTIVLDV-DGVYLTFELA 77 (113)
T ss_pred cCCCCEEEECCCcEEEEEEEecCCCEEEEEE-CCEEEEEEhh
Confidence 57999997 58999999999852 233333 6665554333
No 88
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.56 E-value=1.1e+02 Score=39.16 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCccCCcEEEE----------CCeeEEEEEEeeeEEEEEecCCcEEEEecccc
Q 004039 607 HPFDVGDRCVV----------DGVPLLVEEMNILTTIFLKLSNEKISYPNSVL 649 (777)
Q Consensus 607 hPFdVGDrV~I----------dg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L 649 (777)
+.|.+||+|.+ ||..|+|++|+=-..+++..||..|.++...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHc
Confidence 57999999976 56789999997655555555778887775544
No 89
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=22.04 E-value=80 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.9
Q ss_pred cHHHHHHhhhhhcccccchhhHHHHHHHH
Q 004039 495 IKEEVDLVFPLIEGWDKGQIDRKALTDWV 523 (777)
Q Consensus 495 ~~eea~~af~lfd~d~~G~Is~~~l~~~v 523 (777)
....+..+|..+|.|++|.|+.++|....
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 35678899999999999999999998643
No 90
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=21.94 E-value=90 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHH
Q 004039 499 VDLVFPLIEGWDKGQIDRKALTDWVVKV 526 (777)
Q Consensus 499 a~~af~lfd~d~~G~Is~~~l~~~vv~i 526 (777)
...+|..+|.+.+|.|+.+++...+...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3567889999999999999998877654
No 91
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.75 E-value=1.2e+02 Score=37.72 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCccCCcEEEE----------CCeeEEEEEEeeeEEEEEecCCcEEEEecccc
Q 004039 607 HPFDVGDRCVV----------DGVPLLVEEMNILTTIFLKLSNEKISYPNSVL 649 (777)
Q Consensus 607 hPFdVGDrV~I----------dg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L 649 (777)
..|.+||+|.+ ||..|+|.+|.=-..+++..+|+.+.+|...+
T Consensus 606 ~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~ 658 (744)
T TIGR02768 606 RKFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEY 658 (744)
T ss_pred ceecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHh
Confidence 57999999976 56789999997555555555678888886554
No 92
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=21.58 E-value=1e+02 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=19.1
Q ss_pred CccCCcEEEE-----CCeeEEEEEEeee
Q 004039 608 PFDVGDRCVV-----DGVPLLVEEMNIL 630 (777)
Q Consensus 608 PFdVGDrV~I-----dg~~G~VeeI~Ll 630 (777)
++..||+|.| -|.+|.|.+|..-
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~ 33 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLPK 33 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcC
Confidence 7899999998 3678999998653
No 93
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=21.48 E-value=3e+02 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=24.2
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhhHHHH
Q 004039 566 LMGIATTKVIVFLSSQFVAAAFVFGTTCRTI 596 (777)
Q Consensus 566 ilGi~~t~lla~lgs~~LalgFafq~tl~ni 596 (777)
++|+++--++..++.+..++||.++.++.|.
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~ 101 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQ 101 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 5688876666666677788999999988884
No 94
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.32 E-value=1.3e+02 Score=32.02 Aligned_cols=11 Identities=9% Similarity=0.685 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 004039 325 VTVQIGAFLWL 335 (777)
Q Consensus 325 ~~~lv~a~~~l 335 (777)
.++++.+++|+
T Consensus 224 la~lvl~~I~i 234 (248)
T PF11368_consen 224 LAILVLIIIWI 234 (248)
T ss_pred HHHHHHHHHHH
Confidence 34444444544
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=20.88 E-value=89 Score=27.97 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=23.6
Q ss_pred HHHHhhhhhc-ccccc-hhhHHHHHHHHHH
Q 004039 498 EVDLVFPLIE-GWDKG-QIDRKALTDWVVK 525 (777)
Q Consensus 498 ea~~af~lfd-~d~~G-~Is~~~l~~~vv~ 525 (777)
....+|..|| .|++| .|+.++|+..+..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 3568999998 68999 5999999998765
No 96
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=20.64 E-value=3.6e+02 Score=31.08 Aligned_cols=86 Identities=15% Similarity=0.314 Sum_probs=62.2
Q ss_pred EEEEEEEeecCCHHHHHHHHHHHHHHHHhCCC-CCCC--CcEEEEEEecCCceEEEEEEEEE-cccccccccHHHHHHHH
Q 004039 665 DTVEFSIAFATPIEKIGMLKERIKLYLENNSL-HWHP--NHSVVVKEIENVNKIKIALYCNH-TMNFQEFGEKNNRRSAL 740 (777)
Q Consensus 665 ~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~-~~~p--~~~V~v~~i~d~~~l~l~v~v~~-~~N~qn~~~r~~rRs~l 740 (777)
....|.|.|. |+...|.+--.+.+++.+... .-.| .-++.++++-+.+.+++++-+-. ...-.+..+|+.++.++
T Consensus 155 NDTS~gVGyA-PlS~~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG~R~g~~i~LTvA~a~v~r~v~~~~~Y~~~k~~v 233 (396)
T PF01941_consen 155 NDTSFGVGYA-PLSETEKLVLETERYLNSPEFKKKFPEVGEDIKVMGLREGDKITLTVAMAFVDRYVSSLDEYFERKEEV 233 (396)
T ss_pred CCccceeccC-CccHHHHHHHHHHHHhccccccccCCCcCCCeEEEEEEeCCEEEEEEEhhhhhhhcCCHHHHHHHHHHH
Confidence 3456788887 777777788888999987531 1122 35788889988788999887643 22234677888999998
Q ss_pred HHHHHHHHHHc
Q 004039 741 ITELKKFFEEL 751 (777)
Q Consensus 741 ~~~I~k~l~e~ 751 (777)
...+.+...+.
T Consensus 234 ~~~v~~~a~~~ 244 (396)
T PF01941_consen 234 KEEVEDYAAKY 244 (396)
T ss_pred HHHHHHHHHHh
Confidence 88888887774
Done!