Query 004041
Match_columns 777
No_of_seqs 620 out of 3707
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.1E-37 7.2E-42 328.5 26.8 247 191-457 17-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-37 8.5E-42 329.3 23.7 252 190-456 35-290 (292)
3 1b7f_A Protein (SXL-lethal pro 99.9 7.1E-27 2.4E-31 226.9 18.6 165 196-451 3-167 (168)
4 1fxl_A Paraneoplastic encephal 99.9 2.3E-26 7.8E-31 222.8 20.1 164 196-450 2-165 (167)
5 1l3k_A Heterogeneous nuclear r 99.9 2.3E-26 7.9E-31 229.3 19.0 173 194-457 11-183 (196)
6 2qfj_A FBP-interacting repress 99.9 2.1E-26 7.1E-31 233.3 16.8 179 194-454 26-204 (216)
7 4f02_A Polyadenylate-binding p 99.9 9.7E-27 3.3E-31 235.7 13.5 161 195-363 14-182 (213)
8 4f02_A Polyadenylate-binding p 99.9 8E-26 2.7E-30 228.9 16.8 168 274-456 13-180 (213)
9 3md3_A Nuclear and cytoplasmic 99.9 2.6E-25 8.8E-30 215.2 18.5 164 277-454 1-164 (166)
10 2cjk_A Nuclear polyadenylated 99.9 1E-25 3.4E-30 218.6 14.1 155 195-443 2-156 (167)
11 3nmr_A Cugbp ELAV-like family 99.9 6.1E-25 2.1E-29 214.6 18.7 168 275-450 2-172 (175)
12 3nmr_A Cugbp ELAV-like family 99.9 4E-25 1.4E-29 215.9 16.0 162 195-360 2-175 (175)
13 3md3_A Nuclear and cytoplasmic 99.9 1.4E-24 4.8E-29 210.0 15.5 157 197-360 1-165 (166)
14 3tyt_A Heterogeneous nuclear r 99.9 1.7E-24 5.9E-29 217.2 15.1 165 275-452 3-202 (205)
15 1fje_B Nucleolin RBD12, protei 99.9 1E-24 3.5E-29 213.4 12.5 164 193-456 10-173 (175)
16 2g4b_A Splicing factor U2AF 65 99.9 6.6E-24 2.3E-28 206.8 15.9 152 275-442 3-163 (172)
17 3pgw_A U1-A; protein-RNA compl 99.9 2.7E-23 9.2E-28 219.7 21.7 238 194-442 7-272 (282)
18 2yh0_A Splicing factor U2AF 65 99.9 1.4E-23 4.7E-28 209.5 16.9 168 275-457 3-194 (198)
19 2g4b_A Splicing factor U2AF 65 99.9 6.4E-23 2.2E-27 199.8 16.7 152 195-359 3-171 (172)
20 3tyt_A Heterogeneous nuclear r 99.9 5E-23 1.7E-27 206.6 15.2 145 195-347 3-191 (205)
21 3sde_A Paraspeckle component 1 99.9 6.8E-23 2.3E-27 214.1 16.7 160 194-363 20-180 (261)
22 2yh0_A Splicing factor U2AF 65 99.9 1.6E-23 5.5E-28 209.0 10.2 156 195-363 3-195 (198)
23 2adc_A Polypyrimidine tract-bi 99.9 2.5E-22 8.6E-27 205.5 18.0 165 272-456 30-227 (229)
24 3sde_A Paraspeckle component 1 99.9 7.5E-23 2.6E-27 213.7 14.2 158 275-456 21-178 (261)
25 3smz_A Protein raver-1, ribonu 99.9 4E-22 1.4E-26 210.9 16.7 163 195-364 94-266 (284)
26 2adc_A Polypyrimidine tract-bi 99.9 6.8E-22 2.3E-26 202.3 17.4 156 193-362 31-228 (229)
27 1qm9_A Polypyrimidine tract-bi 99.9 7.6E-22 2.6E-26 197.1 15.8 153 276-444 3-188 (198)
28 1qm9_A Polypyrimidine tract-bi 99.9 8.1E-22 2.8E-26 196.9 13.9 152 196-361 3-196 (198)
29 2ghp_A U4/U6 snRNA-associated 99.9 5.4E-22 1.9E-26 210.7 12.9 161 195-362 116-291 (292)
30 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-18 8.6E-23 165.1 15.0 142 308-456 3-149 (158)
31 3pgw_S U1-70K; protein-RNA com 99.8 3.9E-18 1.3E-22 189.9 15.9 82 371-456 100-181 (437)
32 4f25_A Polyadenylate-binding p 99.7 2.9E-17 9.9E-22 148.8 8.0 95 196-292 5-113 (115)
33 4fxv_A ELAV-like protein 1; RN 99.7 8.5E-17 2.9E-21 141.4 10.6 81 372-456 18-98 (99)
34 2i2y_A Fusion protein consists 99.7 7.4E-17 2.5E-21 153.4 9.4 119 317-444 9-139 (150)
35 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-16 6.9E-21 151.5 11.7 83 371-457 37-119 (156)
36 4fxv_A ELAV-like protein 1; RN 99.7 1.9E-16 6.4E-21 139.2 9.3 83 193-275 16-98 (99)
37 3q2s_C Cleavage and polyadenyl 99.7 5.7E-17 1.9E-21 165.1 5.9 72 373-444 68-141 (229)
38 3s8s_A Histone-lysine N-methyl 99.6 1.1E-15 3.9E-20 136.9 10.9 71 372-442 5-75 (110)
39 1u6f_A Tcubp1, RNA-binding pro 99.6 2.5E-15 8.6E-20 140.8 12.5 83 371-457 40-122 (139)
40 1whw_A Hypothetical protein ri 99.6 2.4E-15 8.1E-20 132.2 11.4 82 372-457 7-88 (99)
41 2cqd_A RNA-binding region cont 99.6 4E-15 1.4E-19 134.8 13.0 81 371-456 15-95 (116)
42 2dnz_A Probable RNA-binding pr 99.6 2.3E-15 7.9E-20 131.1 10.9 72 372-443 4-75 (95)
43 2kn4_A Immunoglobulin G-bindin 99.6 1.3E-15 4.4E-20 146.1 9.6 132 225-364 2-152 (158)
44 2lxi_A RNA-binding protein 10; 99.6 5E-16 1.7E-20 134.3 6.0 82 373-458 1-84 (91)
45 3ex7_B RNA-binding protein 8A; 99.6 1.9E-15 6.6E-20 139.1 10.1 81 371-453 20-100 (126)
46 1x5t_A Splicing factor 3B subu 99.6 2E-15 6.8E-20 131.8 9.7 82 372-457 4-86 (96)
47 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.9E-15 6.4E-20 146.1 10.5 116 326-442 11-141 (165)
48 2div_A TRNA selenocysteine ass 99.6 2.2E-15 7.6E-20 132.4 10.0 86 372-457 8-94 (99)
49 2cq0_A Eukaryotic translation 99.6 3.4E-15 1.1E-19 132.3 10.9 83 371-457 13-95 (103)
50 2dgo_A Cytotoxic granule-assoc 99.6 1.4E-14 4.7E-19 131.0 15.1 83 371-457 13-95 (115)
51 2fy1_A RNA-binding motif prote 99.6 4.4E-15 1.5E-19 134.5 11.4 71 372-443 6-76 (116)
52 2lea_A Serine/arginine-rich sp 99.6 8.7E-16 3E-20 143.1 6.8 113 322-443 5-117 (135)
53 3md1_A Nuclear and cytoplasmic 99.6 5.8E-15 2E-19 125.1 11.1 79 374-456 2-80 (83)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.8E-15 1.3E-19 131.6 10.3 83 371-457 10-92 (102)
55 2cpz_A CUG triplet repeat RNA- 99.6 7.4E-15 2.5E-19 132.8 12.2 82 372-457 24-105 (115)
56 3bs9_A Nucleolysin TIA-1 isofo 99.6 5E-15 1.7E-19 126.7 10.5 71 372-442 5-75 (87)
57 3s8s_A Histone-lysine N-methyl 99.6 3.6E-15 1.2E-19 133.6 9.6 81 195-275 5-85 (110)
58 2lkz_A RNA-binding protein 5; 99.6 1.5E-15 5E-20 132.1 6.9 79 373-455 9-93 (95)
59 2dgs_A DAZ-associated protein 99.6 6E-15 2.1E-19 129.6 10.8 72 371-443 8-79 (99)
60 2cpf_A RNA binding motif prote 99.6 6.5E-15 2.2E-19 129.1 10.7 82 372-457 4-88 (98)
61 2dnm_A SRP46 splicing factor; 99.6 3.5E-15 1.2E-19 132.1 8.9 72 371-442 11-82 (103)
62 2do4_A Squamous cell carcinoma 99.6 1.1E-14 3.8E-19 128.1 11.8 82 371-457 15-96 (100)
63 1x5u_A Splicing factor 3B subu 99.6 7.9E-15 2.7E-19 130.3 10.8 72 371-442 13-84 (105)
64 2lxi_A RNA-binding protein 10; 99.6 1.6E-15 5.5E-20 131.1 6.0 81 197-277 2-84 (91)
65 2x1f_A MRNA 3'-END-processing 99.6 7.9E-15 2.7E-19 128.1 10.5 80 373-456 2-81 (96)
66 2cqc_A Arginine/serine-rich sp 99.6 1.4E-14 4.7E-19 126.2 11.9 81 371-455 13-93 (95)
67 1x5s_A Cold-inducible RNA-bind 99.6 9E-15 3.1E-19 129.2 10.9 74 371-444 10-83 (102)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.7E-15 2.3E-19 125.3 9.7 71 372-442 6-76 (85)
69 2lkz_A RNA-binding protein 5; 99.6 1.6E-15 5.5E-20 131.8 5.8 80 196-275 9-94 (95)
70 1x4c_A Splicing factor, argini 99.6 1.8E-14 6.1E-19 128.8 12.7 79 372-457 14-93 (108)
71 2d9p_A Polyadenylate-binding p 99.6 1.1E-14 3.8E-19 128.9 11.2 70 371-442 13-82 (103)
72 1x4h_A RNA-binding protein 28; 99.6 1.5E-14 5.1E-19 129.9 12.1 83 371-457 13-101 (111)
73 2dng_A Eukaryotic translation 99.6 1.6E-14 5.5E-19 127.9 12.0 80 371-456 13-92 (103)
74 2cph_A RNA binding motif prote 99.6 1.3E-14 4.3E-19 129.4 11.2 73 371-443 13-87 (107)
75 3ns6_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 131.1 7.6 70 373-442 6-81 (100)
76 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-14 4.5E-19 128.7 11.1 81 371-457 13-94 (104)
77 2cpe_A RNA-binding protein EWS 99.6 1.4E-14 4.7E-19 130.6 11.2 83 371-457 13-103 (113)
78 3lqv_A PRE-mRNA branch site pr 99.6 4.4E-15 1.5E-19 134.3 7.8 103 195-302 7-109 (115)
79 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-14 4.6E-19 129.0 10.7 82 371-452 11-93 (106)
80 3q2s_C Cleavage and polyadenyl 99.6 3E-15 1E-19 152.3 7.3 79 195-273 67-147 (229)
81 2e5h_A Zinc finger CCHC-type a 99.6 1.7E-14 5.7E-19 125.4 11.0 72 371-442 14-85 (94)
82 1oo0_B CG8781-PA, drosophila Y 99.6 1.3E-14 4.5E-19 130.1 10.6 82 371-456 24-105 (110)
83 1x4b_A Heterogeneous nuclear r 99.6 1.8E-14 6.2E-19 130.5 11.6 83 370-457 24-106 (116)
84 3p5t_L Cleavage and polyadenyl 99.6 3.7E-15 1.3E-19 128.5 6.7 80 197-276 2-83 (90)
85 3p5t_L Cleavage and polyadenyl 99.6 2.9E-15 9.8E-20 129.2 5.9 71 374-444 2-74 (90)
86 1p27_B RNA-binding protein 8A; 99.5 1.9E-14 6.5E-19 128.1 11.2 81 371-453 21-101 (106)
87 3ucg_A Polyadenylate-binding p 99.5 1.7E-14 5.8E-19 123.9 10.4 80 372-456 5-84 (89)
88 2dnh_A Bruno-like 5, RNA bindi 99.5 3E-14 1E-18 126.5 12.2 70 372-442 14-83 (105)
89 4f25_A Polyadenylate-binding p 99.5 1.5E-14 5.1E-19 130.8 10.4 78 373-456 5-82 (115)
90 2dgu_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 125.8 12.5 76 371-458 9-84 (103)
91 2do0_A HnRNP M, heterogeneous 99.5 4.7E-14 1.6E-18 127.3 13.6 80 371-455 13-92 (114)
92 2jrs_A RNA-binding protein 39; 99.5 2.1E-14 7.3E-19 128.2 11.1 73 371-443 24-96 (108)
93 2dhg_A TRNA selenocysteine ass 99.5 1.5E-14 5E-19 128.3 9.8 71 372-443 8-80 (104)
94 1s79_A Lupus LA protein; RRM, 99.5 1.5E-14 5.1E-19 127.9 9.8 77 372-450 10-86 (103)
95 2dh8_A DAZ-associated protein 99.5 1.8E-14 6.2E-19 128.0 10.5 83 371-458 14-96 (105)
96 2x1f_A MRNA 3'-END-processing 99.5 1.1E-14 3.8E-19 127.1 8.3 87 196-282 2-88 (96)
97 3md1_A Nuclear and cytoplasmic 99.5 1.8E-14 6.3E-19 121.9 9.5 80 197-276 2-81 (83)
98 2la6_A RNA-binding protein FUS 99.5 2.5E-14 8.6E-19 125.6 10.7 75 371-445 11-93 (99)
99 2cq3_A RNA-binding protein 9; 99.5 6E-14 2E-18 124.1 13.2 81 371-457 13-93 (103)
100 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.5E-14 5.1E-19 123.7 8.8 81 195-275 5-85 (87)
101 2dnz_A Probable RNA-binding pr 99.5 2.1E-14 7.3E-19 125.0 9.9 82 195-276 4-85 (95)
102 4a8x_A RNA-binding protein wit 99.5 1.6E-14 5.4E-19 123.8 8.9 70 373-442 4-74 (88)
103 1x4a_A Splicing factor, argini 99.5 5.5E-14 1.9E-18 125.8 12.6 80 371-457 20-99 (109)
104 2kxn_B Transformer-2 protein h 99.5 1.6E-14 5.4E-19 133.4 9.3 82 371-456 44-125 (129)
105 2cqi_A Nucleolysin TIAR; RNA r 99.5 6.6E-14 2.3E-18 123.8 13.0 81 371-457 13-93 (103)
106 2cq0_A Eukaryotic translation 99.5 1.6E-14 5.4E-19 127.9 8.9 83 194-276 13-95 (103)
107 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.5E-14 5.2E-19 123.1 8.1 80 194-273 5-84 (85)
108 2ywk_A Putative RNA-binding pr 99.5 3.5E-14 1.2E-18 123.6 10.5 71 371-442 14-84 (95)
109 1whw_A Hypothetical protein ri 99.5 2.1E-14 7E-19 126.1 8.9 84 194-277 6-89 (99)
110 2cqp_A RNA-binding protein 12; 99.5 2.2E-14 7.6E-19 125.6 8.7 80 372-455 14-93 (98)
111 1x5u_A Splicing factor 3B subu 99.5 2.4E-14 8.3E-19 127.1 9.0 84 194-277 13-96 (105)
112 2dgv_A HnRNP M, heterogeneous 99.5 3.5E-14 1.2E-18 122.8 9.8 70 372-443 7-76 (92)
113 2khc_A Testis-specific RNP-typ 99.5 3.1E-14 1.1E-18 129.3 10.0 74 371-444 38-111 (118)
114 3ulh_A THO complex subunit 4; 99.5 3.5E-14 1.2E-18 126.5 10.1 71 371-442 27-97 (107)
115 2dgo_A Cytotoxic granule-assoc 99.5 3.5E-14 1.2E-18 128.4 10.1 83 194-276 13-95 (115)
116 2cpz_A CUG triplet repeat RNA- 99.5 2.7E-14 9.3E-19 129.1 9.4 82 195-276 24-105 (115)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.8E-19 139.4 8.5 82 194-275 70-151 (165)
118 3ns6_A Eukaryotic translation 99.5 7.2E-15 2.5E-19 129.4 5.4 80 195-274 5-91 (100)
119 1x5t_A Splicing factor 3B subu 99.5 2.3E-14 8E-19 125.0 8.6 83 194-276 3-86 (96)
120 1sjq_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 124.6 9.9 78 371-458 14-93 (105)
121 2cqc_A Arginine/serine-rich sp 99.5 2.7E-14 9.2E-19 124.3 8.9 81 195-275 14-94 (95)
122 3n9u_C Cleavage and polyadenyl 99.5 3E-14 1E-18 135.9 9.9 71 372-442 54-126 (156)
123 1wez_A HnRNP H', FTP-3, hetero 99.5 1.7E-14 5.8E-19 127.4 7.5 70 372-444 14-83 (102)
124 2dgs_A DAZ-associated protein 99.5 3.6E-14 1.2E-18 124.6 9.6 82 194-276 8-89 (99)
125 1p1t_A Cleavage stimulation fa 99.5 2.2E-14 7.5E-19 127.1 8.3 74 371-444 6-79 (104)
126 2i2y_A Fusion protein consists 99.5 1.8E-14 6.2E-19 136.8 8.1 117 234-362 9-148 (150)
127 2e5h_A Zinc finger CCHC-type a 99.5 2.5E-14 8.5E-19 124.3 8.3 80 194-273 14-93 (94)
128 3beg_B Splicing factor, argini 99.5 2.4E-14 8.3E-19 129.4 8.5 78 372-456 15-93 (115)
129 2dnm_A SRP46 splicing factor; 99.5 1.8E-14 6.3E-19 127.5 7.5 83 194-276 11-93 (103)
130 2cqg_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.4E-18 121.9 13.0 81 371-457 13-93 (103)
131 1x5s_A Cold-inducible RNA-bind 99.5 2E-14 6.9E-19 126.9 7.6 83 194-276 10-92 (102)
132 2ek1_A RNA-binding protein 12; 99.5 2E-14 6.9E-19 125.1 7.3 71 372-442 14-84 (95)
133 2jwn_A Embryonic polyadenylate 99.5 4.5E-14 1.5E-18 129.4 10.0 81 371-456 34-114 (124)
134 2dgx_A KIAA0430 protein; RRM d 99.5 6.5E-14 2.2E-18 122.2 10.5 78 372-456 8-89 (96)
135 2div_A TRNA selenocysteine ass 99.5 4.9E-14 1.7E-18 123.7 9.7 83 194-276 7-94 (99)
136 2cpf_A RNA binding motif prote 99.5 3.2E-14 1.1E-18 124.7 8.4 82 195-276 4-88 (98)
137 2cq4_A RNA binding motif prote 99.5 2.8E-14 9.5E-19 128.8 8.2 80 371-455 23-102 (114)
138 3ucg_A Polyadenylate-binding p 99.5 4.8E-14 1.7E-18 121.0 9.3 80 196-276 6-85 (89)
139 1s79_A Lupus LA protein; RRM, 99.5 2.3E-14 7.8E-19 126.7 7.4 77 195-273 10-86 (103)
140 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-14 6.6E-19 127.0 7.0 82 195-276 11-92 (102)
141 2hvz_A Splicing factor, argini 99.5 2.2E-14 7.6E-19 126.4 7.4 84 197-285 1-100 (101)
142 1x4e_A RNA binding motif, sing 99.5 1E-14 3.6E-19 124.2 5.0 71 372-442 4-74 (85)
143 3s7r_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 119.4 10.3 71 371-442 9-79 (87)
144 3r27_A HnRNP L, heterogeneous 99.5 5.4E-14 1.8E-18 122.4 9.5 76 371-456 19-96 (100)
145 1x4e_A RNA binding motif, sing 99.5 3.1E-14 1.1E-18 121.2 7.9 81 194-274 3-83 (85)
146 1p27_B RNA-binding protein 8A; 99.5 4.2E-14 1.4E-18 125.8 9.0 82 194-275 21-102 (106)
147 2wbr_A GW182, gawky, LD47780P; 99.5 3.9E-14 1.3E-18 118.8 8.1 72 196-273 7-78 (89)
148 2do4_A Squamous cell carcinoma 99.5 4.5E-14 1.5E-18 124.2 8.9 82 194-276 15-96 (100)
149 2fc8_A NCL protein; structure 99.5 1E-13 3.5E-18 122.3 11.2 81 371-458 13-93 (102)
150 1x4d_A Matrin 3; structural ge 99.5 4.2E-14 1.4E-18 124.2 8.6 75 372-456 14-91 (102)
151 1x4h_A RNA-binding protein 28; 99.5 4.7E-14 1.6E-18 126.6 9.1 83 194-276 13-101 (111)
152 2ywk_A Putative RNA-binding pr 99.5 5.5E-14 1.9E-18 122.3 9.2 80 194-274 14-93 (95)
153 2cph_A RNA binding motif prote 99.5 4.7E-14 1.6E-18 125.7 8.9 84 194-277 13-98 (107)
154 2kxn_B Transformer-2 protein h 99.5 4.6E-14 1.6E-18 130.3 9.0 83 194-276 44-126 (129)
155 2jrs_A RNA-binding protein 39; 99.5 4.9E-14 1.7E-18 125.8 8.9 84 193-276 23-106 (108)
156 2dgp_A Bruno-like 4, RNA bindi 99.5 4.1E-14 1.4E-18 125.8 8.3 83 194-276 11-96 (106)
157 2mss_A Protein (musashi1); RNA 99.5 3E-14 1E-18 118.1 6.9 70 375-445 1-70 (75)
158 2fy1_A RNA-binding motif prote 99.5 6E-14 2.1E-18 127.0 9.4 82 194-276 5-86 (116)
159 2cpe_A RNA-binding protein EWS 99.5 5.1E-14 1.7E-18 126.8 8.9 84 194-277 13-104 (113)
160 2krb_A Eukaryotic translation 99.5 2.6E-14 8.8E-19 120.6 6.5 68 374-443 2-75 (81)
161 2la6_A RNA-binding protein FUS 99.5 5.2E-14 1.8E-18 123.6 8.6 80 194-273 11-98 (99)
162 2dhg_A TRNA selenocysteine ass 99.5 8.5E-14 2.9E-18 123.3 10.1 82 194-276 7-90 (104)
163 2fc9_A NCL protein; structure 99.5 1.2E-13 4.1E-18 121.7 11.0 79 371-457 13-91 (101)
164 2lcw_A RNA-binding protein FUS 99.2 2.4E-15 8.1E-20 136.4 0.0 82 371-456 5-94 (116)
165 2rs2_A Musashi-1, RNA-binding 99.5 8.3E-14 2.8E-18 124.6 10.1 81 371-456 23-103 (109)
166 2dng_A Eukaryotic translation 99.5 7.3E-14 2.5E-18 123.6 9.5 81 194-276 13-93 (103)
167 2cpi_A CCR4-NOT transcription 99.5 7E-14 2.4E-18 125.5 9.5 82 372-457 14-101 (111)
168 2mss_A Protein (musashi1); RNA 99.5 3E-14 1E-18 118.2 6.5 75 198-273 1-75 (75)
169 1sjq_A Polypyrimidine tract-bi 99.5 9.2E-14 3.2E-18 122.1 9.8 78 193-276 13-92 (105)
170 2khc_A Testis-specific RNP-typ 99.5 5.2E-14 1.8E-18 127.8 8.5 80 194-273 38-117 (118)
171 1x5o_A RNA binding motif, sing 99.5 1.3E-13 4.4E-18 124.4 11.1 84 372-456 24-111 (114)
172 2d9p_A Polyadenylate-binding p 99.5 6.2E-14 2.1E-18 124.0 8.7 81 194-276 13-93 (103)
173 2dgw_A Probable RNA-binding pr 99.5 1.1E-13 3.8E-18 119.4 10.1 78 372-456 9-86 (91)
174 3n9u_C Cleavage and polyadenyl 99.5 5.3E-14 1.8E-18 134.2 8.8 80 195-274 54-135 (156)
175 2cq1_A PTB-like protein L; RRM 99.5 2.3E-13 7.9E-18 119.6 12.1 76 371-456 13-90 (101)
176 2cqd_A RNA-binding region cont 99.5 7.3E-14 2.5E-18 126.5 9.2 81 194-275 15-95 (116)
177 3s7r_A Heterogeneous nuclear r 99.5 6E-14 2E-18 120.0 8.1 80 193-273 8-87 (87)
178 1wi8_A EIF-4B, eukaryotic tran 99.5 7.4E-14 2.5E-18 123.8 9.0 80 195-276 14-94 (104)
179 1wex_A Hypothetical protein (r 99.5 1.7E-13 5.7E-18 121.2 11.1 66 371-442 13-80 (104)
180 1oo0_B CG8781-PA, drosophila Y 99.5 7.2E-14 2.4E-18 125.2 8.8 82 194-275 24-105 (110)
181 3ulh_A THO complex subunit 4; 99.5 7.3E-14 2.5E-18 124.5 8.8 79 194-273 27-105 (107)
182 2dnq_A RNA-binding protein 4B; 99.5 1.5E-13 5.2E-18 118.3 10.5 73 372-456 7-79 (90)
183 2dnh_A Bruno-like 5, RNA bindi 99.5 7.3E-14 2.5E-18 124.0 8.8 82 194-276 13-97 (105)
184 3ex7_B RNA-binding protein 8A; 99.5 5.9E-14 2E-18 129.0 8.3 81 194-274 20-100 (126)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.9E-14 1E-18 125.4 5.9 72 371-444 17-89 (100)
186 2ek1_A RNA-binding protein 12; 99.5 4.2E-14 1.4E-18 123.1 6.8 80 195-274 14-93 (95)
187 2dgt_A RNA-binding protein 30; 99.5 2.1E-13 7E-18 118.0 11.0 75 371-457 8-82 (92)
188 2dh8_A DAZ-associated protein 99.5 7E-14 2.4E-18 124.2 8.2 82 194-276 14-95 (105)
189 2dgv_A HnRNP M, heterogeneous 99.5 1.4E-13 4.6E-18 119.1 9.8 81 194-276 6-86 (92)
190 4a8x_A RNA-binding protein wit 99.5 4.9E-14 1.7E-18 120.7 6.8 81 195-275 3-84 (88)
191 2m2b_A RNA-binding protein 10; 99.5 4.4E-14 1.5E-18 130.9 7.1 73 371-444 21-99 (131)
192 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.2E-14 1.5E-18 117.8 6.2 71 374-445 1-71 (77)
193 2cqp_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 123.5 6.9 81 195-275 14-94 (98)
194 2hgn_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 134.2 4.1 71 371-444 44-114 (139)
195 1wf1_A RNA-binding protein RAL 99.5 2.6E-13 9E-18 121.5 11.6 92 351-456 7-99 (110)
196 2wbr_A GW182, gawky, LD47780P; 99.5 1.1E-13 3.8E-18 116.0 8.4 64 373-442 7-70 (89)
197 2cpy_A RNA-binding protein 12; 99.5 2.2E-14 7.6E-19 129.5 4.5 70 371-442 13-83 (114)
198 1h2v_Z 20 kDa nuclear CAP bind 99.5 1E-13 3.5E-18 132.5 9.4 83 194-276 37-119 (156)
199 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.1E-13 1E-17 126.6 12.4 74 369-442 59-132 (140)
200 1p1t_A Cleavage stimulation fa 99.5 6.1E-14 2.1E-18 124.3 7.2 81 196-276 8-88 (104)
201 1wg5_A Heterogeneous nuclear r 99.5 1.9E-13 6.6E-18 121.1 10.4 77 372-452 14-91 (104)
202 2kt5_A RNA and export factor-b 99.5 1.3E-13 4.4E-18 126.4 9.5 79 371-452 33-111 (124)
203 2krb_A Eukaryotic translation 99.5 9.4E-14 3.2E-18 117.1 7.8 73 197-271 2-81 (81)
204 2cq3_A RNA-binding protein 9; 99.5 1.8E-13 6.2E-18 121.0 10.0 81 194-276 13-93 (103)
205 2nlw_A Eukaryotic translation 99.5 1E-13 3.4E-18 123.2 8.3 69 372-442 14-88 (105)
206 2cpx_A Hypothetical protein FL 99.5 5.5E-14 1.9E-18 127.0 6.7 73 371-443 23-95 (115)
207 1why_A Hypothetical protein ri 99.5 1.7E-13 5.8E-18 119.8 9.6 78 371-456 15-92 (97)
208 2jvr_A Nucleolar protein 3; RN 99.5 8.8E-14 3E-18 124.3 7.9 75 373-455 28-103 (111)
209 2cpd_A Apobec-1 stimulating pr 99.5 4.5E-13 1.5E-17 117.6 12.3 78 369-458 11-90 (99)
210 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.8E-14 1.3E-18 118.1 5.2 76 197-273 1-76 (77)
211 2ki2_A SS-DNA binding protein 99.5 4E-14 1.4E-18 121.9 5.3 73 374-447 2-74 (90)
212 2err_A Ataxin-2-binding protei 99.5 1.3E-13 4.4E-18 123.3 8.8 80 371-456 27-106 (109)
213 2dgx_A KIAA0430 protein; RRM d 99.5 1.2E-13 4.1E-18 120.5 8.4 79 195-276 8-90 (96)
214 2dnp_A RNA-binding protein 14; 99.5 2.3E-13 7.7E-18 117.2 10.0 75 371-457 7-81 (90)
215 2cpi_A CCR4-NOT transcription 99.5 8.9E-14 3.1E-18 124.8 7.7 86 195-280 14-105 (111)
216 2dis_A Unnamed protein product 99.5 1.7E-13 6E-18 122.4 9.4 72 372-443 7-82 (109)
217 2j76_E EIF-4B, EIF4B, eukaryot 99.4 8.6E-14 2.9E-18 122.5 7.2 81 194-276 17-98 (100)
218 2do0_A HnRNP M, heterogeneous 99.4 1.7E-13 5.8E-18 123.6 9.3 80 195-275 14-93 (114)
219 2m2b_A RNA-binding protein 10; 99.4 6E-14 2E-18 130.0 6.4 81 195-276 22-108 (131)
220 2ad9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.7E-18 123.6 9.1 66 371-442 29-96 (119)
221 2cq4_A RNA binding motif prote 99.4 6.2E-14 2.1E-18 126.5 6.3 77 196-273 25-101 (114)
222 2ki2_A SS-DNA binding protein 99.4 5.1E-14 1.7E-18 121.2 5.3 79 197-276 2-80 (90)
223 1x4a_A Splicing factor, argini 99.4 2.5E-13 8.6E-18 121.4 10.1 80 194-276 20-99 (109)
224 2dnn_A RNA-binding protein 12; 99.4 1.7E-13 5.9E-18 122.1 8.9 68 372-442 15-82 (109)
225 1x4g_A Nucleolysin TIAR; struc 99.4 3.5E-13 1.2E-17 120.5 10.9 76 372-457 24-99 (109)
226 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.9E-13 6.6E-18 120.8 9.2 81 194-276 13-93 (103)
227 1wez_A HnRNP H', FTP-3, hetero 99.4 8E-14 2.7E-18 123.1 6.5 78 194-274 13-90 (102)
228 1u6f_A Tcubp1, RNA-binding pro 99.4 1.3E-13 4.4E-18 129.1 8.2 82 195-276 41-122 (139)
229 2rs2_A Musashi-1, RNA-binding 99.4 1.6E-13 5.5E-18 122.7 8.5 83 193-276 22-104 (109)
230 1x4b_A Heterogeneous nuclear r 99.4 1.7E-13 5.8E-18 124.0 8.8 80 196-276 27-106 (116)
231 2cpj_A Non-POU domain-containi 99.4 2.8E-13 9.7E-18 118.8 9.9 66 371-442 13-78 (99)
232 2kvi_A Nuclear polyadenylated 99.4 2.7E-13 9.2E-18 118.3 9.6 72 371-450 8-80 (96)
233 2hvz_A Splicing factor, argini 99.4 2.9E-13 9.9E-18 119.2 9.9 66 374-444 1-66 (101)
234 2jwn_A Embryonic polyadenylate 99.4 1.3E-13 4.3E-18 126.5 7.8 81 195-276 35-115 (124)
235 1wg5_A Heterogeneous nuclear r 99.4 1.7E-13 5.8E-18 121.5 8.4 81 194-276 13-94 (104)
236 2kt5_A RNA and export factor-b 99.4 2.1E-13 7.2E-18 125.0 9.2 83 194-277 33-115 (124)
237 1wel_A RNA-binding protein 12; 99.4 8.6E-14 2.9E-18 127.6 6.4 74 371-445 23-96 (124)
238 1iqt_A AUF1, heterogeneous nuc 99.4 7.9E-14 2.7E-18 115.6 5.4 72 375-447 1-72 (75)
239 2dgw_A Probable RNA-binding pr 99.4 1.9E-13 6.6E-18 117.9 8.0 80 194-276 8-87 (91)
240 2cpy_A RNA-binding protein 12; 99.4 1E-13 3.4E-18 125.1 6.4 78 194-273 13-91 (114)
241 2dis_A Unnamed protein product 99.4 2E-13 6.9E-18 122.0 8.4 84 194-277 6-93 (109)
242 2cpj_A Non-POU domain-containi 99.4 1.9E-13 6.6E-18 119.9 8.0 84 194-283 13-96 (99)
243 1fjc_A Nucleolin RBD2, protein 99.4 2E-13 6.8E-18 119.0 8.0 78 371-457 14-91 (96)
244 2db1_A Heterogeneous nuclear r 99.4 1.2E-13 4E-18 125.5 6.7 78 194-273 15-95 (118)
245 1x4d_A Matrin 3; structural ge 99.4 1E-13 3.4E-18 121.8 6.0 80 195-280 14-96 (102)
246 2db1_A Heterogeneous nuclear r 99.4 1.6E-13 5.5E-18 124.6 7.6 69 372-442 16-87 (118)
247 2cqg_A TDP-43, TAR DNA-binding 99.4 3.6E-13 1.2E-17 119.1 9.4 81 194-276 13-93 (103)
248 2nlw_A Eukaryotic translation 99.4 1.7E-13 5.9E-18 121.6 7.3 81 195-277 14-101 (105)
249 1fj7_A Nucleolin RBD1, protein 99.4 3.1E-14 1.1E-18 125.5 2.3 79 372-456 16-94 (101)
250 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4.2E-18 128.5 6.3 82 195-276 46-127 (135)
251 1x4c_A Splicing factor, argini 99.4 3.8E-13 1.3E-17 120.0 9.3 76 194-276 13-93 (108)
252 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.6E-13 8.8E-18 127.1 8.5 80 194-273 61-140 (140)
253 1iqt_A AUF1, heterogeneous nuc 99.4 1E-13 3.5E-18 114.9 5.1 75 198-273 1-75 (75)
254 2dnn_A RNA-binding protein 12; 99.4 2.1E-13 7.2E-18 121.6 7.4 75 196-273 16-90 (109)
255 2hgl_A HNRPF protein, heteroge 99.4 1.3E-13 4.3E-18 128.1 6.1 76 372-451 43-121 (136)
256 2cqh_A IGF-II mRNA-binding pro 99.4 3.2E-13 1.1E-17 117.0 8.3 75 372-457 7-83 (93)
257 2hgl_A HNRPF protein, heteroge 99.4 1.3E-13 4.4E-18 128.0 6.1 78 194-273 42-122 (136)
258 2a3j_A U1 small nuclear ribonu 99.4 3.8E-13 1.3E-17 123.3 9.0 70 372-444 28-101 (127)
259 2ytc_A PRE-mRNA-splicing facto 99.4 5.8E-13 2E-17 113.2 9.5 66 371-442 10-76 (85)
260 2cq2_A Hypothetical protein LO 99.4 4.3E-13 1.5E-17 119.6 8.9 78 372-455 24-104 (114)
261 1wel_A RNA-binding protein 12; 99.4 7.3E-14 2.5E-18 128.1 4.0 79 194-273 23-101 (124)
262 2lmi_A GRSF-1, G-rich sequence 99.4 1.7E-13 5.7E-18 122.2 6.1 78 194-273 9-89 (107)
263 2jvo_A Nucleolar protein 3; nu 99.4 5.9E-13 2E-17 118.8 9.7 75 371-457 29-103 (108)
264 1x4g_A Nucleolysin TIAR; struc 99.4 8.5E-13 2.9E-17 118.0 10.7 81 191-277 20-100 (109)
265 2xnq_A Nuclear polyadenylated 99.4 8.6E-13 3E-17 115.3 10.4 74 371-456 20-94 (97)
266 3zzy_A Polypyrimidine tract-bi 99.4 9.2E-13 3.1E-17 120.2 10.8 80 372-458 27-107 (130)
267 2la4_A Nuclear and cytoplasmic 99.4 4.2E-13 1.4E-17 118.2 8.3 74 373-456 27-100 (101)
268 2e5j_A Methenyltetrahydrofolat 99.4 4.8E-13 1.6E-17 116.9 8.5 68 372-444 18-85 (97)
269 1whx_A Hypothetical protein ri 99.4 4.9E-13 1.7E-17 120.0 8.7 71 372-448 9-79 (111)
270 1x5o_A RNA binding motif, sing 99.4 5.2E-13 1.8E-17 120.4 8.9 76 194-270 23-98 (114)
271 2lmi_A GRSF-1, G-rich sequence 99.4 1.8E-13 6.2E-18 121.9 5.8 71 372-444 10-83 (107)
272 2la4_A Nuclear and cytoplasmic 99.4 9E-13 3.1E-17 116.0 10.0 77 193-275 24-100 (101)
273 2err_A Ataxin-2-binding protei 99.4 3.7E-13 1.3E-17 120.4 7.6 82 193-276 26-107 (109)
274 2jvr_A Nucleolar protein 3; RN 99.4 3.2E-13 1.1E-17 120.7 7.1 79 193-275 25-104 (111)
275 2dnq_A RNA-binding protein 4B; 99.4 9.1E-13 3.1E-17 113.4 9.7 75 194-276 6-80 (90)
276 2f3j_A RNA and export factor b 99.4 5E-13 1.7E-17 130.3 9.0 76 371-447 86-161 (177)
277 3lqv_A PRE-mRNA branch site pr 99.4 7.7E-13 2.6E-17 119.5 9.6 70 372-444 7-76 (115)
278 1nu4_A U1A RNA binding domain; 99.4 3.6E-13 1.2E-17 117.6 7.2 79 371-456 6-88 (97)
279 1x4f_A Matrin 3; structural ge 99.4 4E-13 1.4E-17 119.7 7.4 68 371-444 23-93 (112)
280 2e5i_A Heterogeneous nuclear r 99.4 1.6E-12 5.5E-17 118.1 11.5 79 371-457 23-102 (124)
281 3r27_A HnRNP L, heterogeneous 99.4 5E-13 1.7E-17 116.2 7.7 77 194-276 19-97 (100)
282 2e5g_A U6 snRNA-specific termi 99.4 1.5E-12 5.1E-17 113.0 10.7 65 372-442 7-71 (94)
283 2cq1_A PTB-like protein L; RRM 99.4 7.6E-13 2.6E-17 116.2 8.9 76 195-276 14-91 (101)
284 1x4f_A Matrin 3; structural ge 99.4 2.3E-13 8E-18 121.2 5.6 83 194-282 23-108 (112)
285 2f3j_A RNA and export factor b 99.4 4.4E-13 1.5E-17 130.7 8.0 82 194-276 86-167 (177)
286 1wg1_A KIAA1579 protein, homol 99.4 4E-13 1.4E-17 115.2 6.8 84 194-284 3-86 (88)
287 2hgn_A Heterogeneous nuclear r 99.4 2.1E-13 7.3E-18 126.9 5.3 80 194-276 44-123 (139)
288 2dha_A FLJ20171 protein; RRM d 99.4 4.3E-13 1.5E-17 122.2 7.1 79 193-273 20-102 (123)
289 2ad9_A Polypyrimidine tract-bi 99.4 6E-13 2.1E-17 119.9 7.9 76 195-276 30-107 (119)
290 2dha_A FLJ20171 protein; RRM d 99.4 3E-13 1E-17 123.2 5.9 75 373-451 23-101 (123)
291 1x5p_A Negative elongation fac 99.4 3.3E-12 1.1E-16 111.6 12.3 75 371-457 13-87 (97)
292 2xs2_A Deleted in azoospermia- 99.4 5.8E-13 2E-17 117.5 7.4 70 371-443 7-76 (102)
293 2j8a_A Histone-lysine N-methyl 99.4 5.1E-13 1.7E-17 119.5 7.0 77 374-454 3-93 (136)
294 2fc9_A NCL protein; structure 99.4 6.6E-13 2.3E-17 116.9 7.5 79 194-276 13-91 (101)
295 1fj7_A Nucleolin RBD1, protein 99.4 1.5E-13 5.2E-18 121.0 3.3 80 195-276 16-95 (101)
296 1whx_A Hypothetical protein ri 99.4 2.5E-13 8.4E-18 121.9 4.6 76 194-275 8-83 (111)
297 2a3j_A U1 small nuclear ribonu 99.4 1E-12 3.4E-17 120.5 8.6 80 195-277 28-111 (127)
298 1why_A Hypothetical protein ri 99.4 1.1E-12 3.7E-17 114.6 8.4 76 195-276 16-93 (97)
299 2fc8_A NCL protein; structure 99.4 9.2E-13 3.1E-17 116.2 8.0 80 194-276 13-92 (102)
300 1sjr_A Polypyrimidine tract-bi 99.4 3E-12 1E-16 121.3 11.7 80 372-457 45-124 (164)
301 3d2w_A TAR DNA-binding protein 99.4 1.2E-12 3.9E-17 112.5 8.1 75 371-456 9-83 (89)
302 2ytc_A PRE-mRNA-splicing facto 99.4 1.5E-12 5.1E-17 110.6 8.6 74 194-273 10-84 (85)
303 3beg_B Splicing factor, argini 99.4 8.6E-13 2.9E-17 119.2 7.5 71 194-271 14-84 (115)
304 2dnl_A Cytoplasmic polyadenyla 99.4 8.8E-13 3E-17 118.9 7.5 68 372-440 7-80 (114)
305 2cpx_A Hypothetical protein FL 99.4 3.2E-13 1.1E-17 121.9 4.6 82 195-276 24-105 (115)
306 2lcw_A RNA-binding protein FUS 99.0 6.5E-14 2.2E-18 126.8 0.0 83 194-276 5-95 (116)
307 2hgm_A HNRPF protein, heteroge 99.4 8.8E-13 3E-17 120.4 7.3 70 372-444 41-112 (126)
308 2e5j_A Methenyltetrahydrofolat 99.4 1.1E-12 3.8E-17 114.5 7.7 77 195-276 18-94 (97)
309 1wex_A Hypothetical protein (r 99.3 1.3E-12 4.5E-17 115.4 8.1 76 195-276 14-91 (104)
310 2jvo_A Nucleolar protein 3; nu 99.3 1.8E-12 6.2E-17 115.6 9.1 78 191-276 26-103 (108)
311 2e5g_A U6 snRNA-specific termi 99.3 3.1E-12 1.1E-16 111.0 10.4 76 195-276 7-82 (94)
312 2hgm_A HNRPF protein, heteroge 99.3 8.4E-13 2.9E-17 120.5 6.9 77 194-273 40-118 (126)
313 3pgw_S U1-70K; protein-RNA com 99.3 1.1E-12 3.7E-17 146.0 9.2 81 195-275 101-181 (437)
314 1fxl_A Paraneoplastic encephal 99.3 3.2E-12 1.1E-16 122.9 10.9 80 373-456 2-81 (167)
315 2dgt_A RNA-binding protein 30; 99.3 1.8E-12 6E-17 112.1 8.1 76 194-277 8-83 (92)
316 2dnp_A RNA-binding protein 14; 99.3 1.8E-12 6.3E-17 111.5 8.1 75 194-276 7-81 (90)
317 1b7f_A Protein (SXL-lethal pro 99.3 2.5E-12 8.4E-17 123.9 10.0 80 373-456 3-82 (168)
318 3egn_A RNA-binding protein 40; 99.3 3.9E-13 1.3E-17 126.5 4.0 82 371-456 43-129 (143)
319 2xnq_A Nuclear polyadenylated 99.3 2.9E-12 1E-16 111.9 9.4 77 192-276 18-95 (97)
320 2pe8_A Splicing factor 45; RRM 99.3 4.3E-12 1.5E-16 112.3 10.3 72 371-442 6-83 (105)
321 2dgu_A Heterogeneous nuclear r 99.3 1.8E-12 6.2E-17 114.6 7.8 74 195-276 10-83 (103)
322 2kvi_A Nuclear polyadenylated 99.3 2.3E-12 7.8E-17 112.3 8.1 75 194-276 8-83 (96)
323 2dnl_A Cytoplasmic polyadenyla 99.3 1.3E-12 4.6E-17 117.7 6.7 77 194-273 6-85 (114)
324 1nu4_A U1A RNA binding domain; 99.3 9.7E-13 3.3E-17 114.8 5.4 81 194-277 6-90 (97)
325 1wg1_A KIAA1579 protein, homol 99.3 2.8E-12 9.4E-17 109.9 8.1 71 373-454 5-75 (88)
326 2cpd_A Apobec-1 stimulating pr 99.3 4.5E-12 1.5E-16 111.1 9.2 75 195-277 14-90 (99)
327 2xs2_A Deleted in azoospermia- 99.3 1.1E-12 3.9E-17 115.6 5.4 77 195-274 8-84 (102)
328 2hzc_A Splicing factor U2AF 65 99.3 3.4E-12 1.2E-16 108.9 7.9 66 371-443 4-80 (87)
329 2e44_A Insulin-like growth fac 99.3 4.1E-12 1.4E-16 110.6 8.5 68 372-443 14-82 (96)
330 2j8a_A Histone-lysine N-methyl 99.3 1.7E-12 5.9E-17 116.1 6.1 80 197-276 3-96 (136)
331 1fjc_A Nucleolin RBD2, protein 99.3 1.2E-12 4.1E-17 114.1 4.8 77 195-276 15-91 (96)
332 1wf1_A RNA-binding protein RAL 99.3 3.4E-12 1.2E-16 114.3 7.7 73 195-275 26-99 (110)
333 2e44_A Insulin-like growth fac 99.3 2.6E-12 8.7E-17 111.9 6.7 78 195-276 14-92 (96)
334 2diu_A KIAA0430 protein; struc 99.3 5.7E-12 1.9E-16 106.7 8.4 77 196-282 9-90 (96)
335 2cqh_A IGF-II mRNA-binding pro 99.3 2.9E-12 9.9E-17 110.9 6.0 75 195-276 7-83 (93)
336 2diu_A KIAA0430 protein; struc 99.3 6.3E-12 2.2E-16 106.4 7.4 69 374-456 10-83 (96)
337 3egn_A RNA-binding protein 40; 99.3 1.3E-12 4.5E-17 122.8 3.6 79 194-275 43-129 (143)
338 1l3k_A Heterogeneous nuclear r 99.3 1E-11 3.5E-16 122.9 9.9 71 371-442 11-81 (196)
339 1wf0_A TDP-43, TAR DNA-binding 99.3 5.7E-12 1.9E-16 107.9 7.0 75 372-457 4-78 (88)
340 3zzy_A Polypyrimidine tract-bi 99.3 1.2E-11 4E-16 112.9 9.4 79 194-277 26-107 (130)
341 2hzc_A Splicing factor U2AF 65 99.3 9.3E-12 3.2E-16 106.1 8.2 71 195-272 5-86 (87)
342 1x5p_A Negative elongation fac 99.2 1.7E-11 6E-16 106.9 9.5 76 194-277 13-88 (97)
343 2qfj_A FBP-interacting repress 99.2 1.4E-11 4.9E-16 123.8 10.0 84 193-276 122-205 (216)
344 2voo_A Lupus LA protein; RNA-b 99.2 1.8E-11 6.1E-16 121.0 10.4 72 371-444 107-178 (193)
345 1sjr_A Polypyrimidine tract-bi 99.2 1.3E-11 4.5E-16 116.9 8.9 78 195-276 45-124 (164)
346 2e5i_A Heterogeneous nuclear r 99.2 2.3E-11 7.8E-16 110.5 9.7 76 196-277 25-103 (124)
347 2bz2_A Negative elongation fac 99.2 1.5E-11 5.1E-16 111.9 7.8 65 371-443 37-101 (121)
348 2cjk_A Nuclear polyadenylated 99.2 9.1E-12 3.1E-16 119.8 6.4 80 196-276 87-166 (167)
349 2pe8_A Splicing factor 45; RRM 99.2 3.5E-11 1.2E-15 106.4 9.6 81 194-274 6-92 (105)
350 2cq2_A Hypothetical protein LO 99.2 1.3E-11 4.5E-16 110.0 6.3 73 195-273 24-103 (114)
351 3d2w_A TAR DNA-binding protein 99.2 2.3E-11 7.8E-16 104.3 7.4 74 193-275 8-83 (89)
352 2voo_A Lupus LA protein; RNA-b 99.2 2.6E-11 8.8E-16 119.9 8.1 80 194-275 107-186 (193)
353 3v4m_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 106.6 7.6 72 372-443 4-87 (105)
354 1wf0_A TDP-43, TAR DNA-binding 99.2 1.7E-11 6E-16 104.8 5.4 75 195-276 4-78 (88)
355 3u1l_A PRE-mRNA-splicing facto 99.2 3.3E-11 1.1E-15 121.9 7.8 64 371-440 132-204 (240)
356 2bz2_A Negative elongation fac 99.2 4.7E-11 1.6E-15 108.7 7.9 76 193-276 36-111 (121)
357 2dit_A HIV TAT specific factor 99.1 2.2E-10 7.4E-15 102.8 11.5 78 371-456 13-101 (112)
358 3ue2_A Poly(U)-binding-splicin 99.1 7.3E-11 2.5E-15 106.5 8.1 73 372-444 19-100 (118)
359 3pgw_A U1-A; protein-RNA compl 99.1 9.7E-11 3.3E-15 123.1 10.1 69 371-442 7-79 (282)
360 2dit_A HIV TAT specific factor 99.1 2.4E-10 8.3E-15 102.4 9.2 83 193-279 12-105 (112)
361 1jmt_A Splicing factor U2AF 35 99.1 5.9E-11 2E-15 104.8 4.4 66 378-444 20-97 (104)
362 3u1l_A PRE-mRNA-splicing facto 99.1 1.1E-10 3.6E-15 118.2 6.8 78 193-276 131-229 (240)
363 1fje_B Nucleolin RBD12, protei 99.1 1.4E-10 4.9E-15 112.4 7.2 76 195-275 98-173 (175)
364 3tht_A Alkylated DNA repair pr 99.0 3.8E-10 1.3E-14 120.4 8.8 78 371-454 16-96 (345)
365 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4.2E-15 102.8 3.0 72 201-273 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.0 4.2E-10 1.4E-14 99.5 6.4 79 195-273 4-94 (105)
367 3ue2_A Poly(U)-binding-splicin 99.0 6.3E-10 2.2E-14 100.3 6.2 81 193-273 17-106 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.8E-09 9.5E-14 93.0 9.3 50 383-437 27-76 (100)
369 3s6e_A RNA-binding protein 39; 98.9 1.9E-09 6.6E-14 96.4 7.8 69 372-444 6-84 (114)
370 1owx_A Lupus LA protein, SS-B, 98.9 4.8E-09 1.6E-13 94.0 8.7 73 371-451 16-92 (121)
371 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.1E-08 3.6E-13 89.3 9.5 64 206-276 27-90 (100)
372 3tht_A Alkylated DNA repair pr 98.7 1.6E-08 5.5E-13 107.8 7.7 65 194-264 16-82 (345)
373 3s6e_A RNA-binding protein 39; 98.7 2.6E-08 8.9E-13 89.1 7.2 74 196-273 7-90 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.6 9.1E-08 3.1E-12 80.2 6.5 70 374-456 8-85 (91)
375 1owx_A Lupus LA protein, SS-B, 98.5 1.1E-07 3.6E-12 85.3 6.7 72 194-271 16-91 (121)
376 3dxb_A Thioredoxin N-terminall 98.5 9.2E-07 3.1E-11 89.1 12.5 64 384-447 140-207 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.5 2E-07 6.7E-12 78.2 6.1 71 195-274 6-84 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 6.1E-07 2.1E-11 75.6 5.2 62 372-442 14-84 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.2 8.5E-07 2.9E-11 74.7 4.7 71 194-273 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.0 3.7E-06 1.3E-10 84.6 5.8 66 208-273 141-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 97.9 1.7E-05 6E-10 67.9 6.6 63 374-442 22-89 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.7 4.5E-05 1.5E-09 65.5 6.2 73 193-271 18-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.4 0.00071 2.4E-08 57.7 9.5 86 195-289 7-99 (104)
384 1whv_A Poly(A)-specific ribonu 96.9 0.0018 6.1E-08 54.5 6.4 54 374-436 17-70 (100)
385 1uw4_A UPF3X; nonsense mediate 96.6 0.0051 1.8E-07 51.8 7.4 70 374-443 2-73 (91)
386 1uw4_A UPF3X; nonsense mediate 96.5 0.011 3.8E-07 49.7 8.8 70 197-266 2-73 (91)
387 3ctr_A Poly(A)-specific ribonu 96.4 0.0043 1.5E-07 52.4 5.5 54 374-436 7-60 (101)
388 2dhx_A Poly (ADP-ribose) polym 96.4 0.0068 2.3E-07 51.7 6.8 61 373-442 8-73 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.2 0.012 4.2E-07 51.7 7.9 62 373-442 24-85 (119)
390 1wey_A Calcipressin 1; structu 96.1 0.0068 2.3E-07 51.9 5.1 64 374-443 6-74 (104)
391 1wey_A Calcipressin 1; structu 96.0 0.0071 2.4E-07 51.8 5.0 73 196-274 5-82 (104)
392 1whv_A Poly(A)-specific ribonu 96.0 0.012 4.1E-07 49.5 6.1 53 198-259 18-70 (100)
393 3ctr_A Poly(A)-specific ribonu 95.6 0.013 4.4E-07 49.5 4.7 53 199-259 8-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 95.2 0.048 1.6E-06 48.0 7.5 70 196-273 24-94 (119)
395 2l08_A Regulator of nonsense t 95.0 0.035 1.2E-06 46.9 5.8 71 196-266 9-81 (97)
396 2l08_A Regulator of nonsense t 94.5 0.032 1.1E-06 47.2 4.2 71 373-443 9-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 92.9 0.055 1.9E-06 59.5 3.8 68 184-257 41-108 (464)
398 3p3d_A Nucleoporin 53; structu 91.1 0.17 6E-06 45.1 4.1 76 196-273 7-96 (132)
399 3p3d_A Nucleoporin 53; structu 91.1 0.17 5.9E-06 45.1 4.0 68 374-443 8-89 (132)
400 3pq1_A Poly(A) RNA polymerase; 90.6 0.1 3.5E-06 57.4 2.6 54 374-433 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 76.7 4.2 0.00014 45.4 7.5 56 373-437 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 62.9 12 0.0004 41.8 7.2 53 198-259 442-494 (507)
403 4eyt_A Telomerase associated p 51.9 47 0.0016 27.0 6.9 55 374-436 13-67 (129)
404 4eyt_A Telomerase associated p 45.4 59 0.002 26.4 6.6 57 194-258 10-66 (129)
405 3iz6_V 40S ribosomal protein S 32.2 16 0.00056 31.2 1.4 16 1-16 1-16 (108)
406 3lpe_A Putative transcription 30.0 1.6E+02 0.0053 24.2 7.2 52 223-298 40-91 (92)
407 3tj1_A RNA polymerase I-specif 29.4 12 0.0004 42.7 0.1 10 236-245 399-408 (649)
408 2g0c_A ATP-dependent RNA helic 24.7 1.5E+02 0.0052 22.9 6.0 53 385-446 13-70 (76)
409 3fry_A Probable copper-exporti 22.0 1.6E+02 0.0054 22.1 5.6 54 374-434 7-60 (73)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.1e-37 Score=328.53 Aligned_cols=247 Identities=21% Similarity=0.341 Sum_probs=220.6
Q ss_pred HhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 191 ~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
......++|||+|||..+|+++|+++|..|| |..|.+ ++++|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 89 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence 3445678999999999999999999999999 888887 456899999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccC
Q 004041 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350 (777)
Q Consensus 271 ~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~ 350 (777)
.++....+|||+|||..+++++|+++|..+| .|..+.++.+ ..++.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---~ 163 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFG--SLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---G 163 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcC--CeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 9999999999999999999999999999999 7889988877 35788999999999999999999999999877 5
Q ss_pred CCCccccccCCCCCCCcccccccceeecCCCCCCC-CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHH
Q 004041 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (777)
Q Consensus 351 ~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~ 429 (777)
++.|.|.++....... .....++|||+|||..+ ++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.
T Consensus 164 g~~i~v~~a~~~~~~~--~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 164 PRTLYVHWTDAGQLTP--ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp TEECEEEECCGGGCCT--TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred CcEEEEEECCCCCCCc--ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 8999999987654332 22456899999999995 999999999999999999999986 7899999999999999999
Q ss_pred HHHHHhCCCeeCCCcceEEEEEeecCCC
Q 004041 430 TCAKSINNAELGEGDNKAKVRARLSRPL 457 (777)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (777)
+|+..|||..|.| ..+.+.++.+.
T Consensus 241 ~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 241 EAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHhCCCccCC----eEEEEEEecCC
Confidence 9999999999986 45555555543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.5e-37 Score=329.33 Aligned_cols=252 Identities=20% Similarity=0.312 Sum_probs=208.4
Q ss_pred HHhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004041 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 190 ~~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (777)
.+.....++|||+|||+.+|+++|+++|..||.|..|.|+.+... ++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 334567789999999999999999999999999999999987643 58999999999999999995 899999999999
Q ss_pred cCCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceecc
Q 004041 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (777)
Q Consensus 270 V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (777)
|.++ ..++|||+|||..+++++|+++|..+|. .|..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 112 v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--- 184 (292)
T 2ghp_A 112 VSHL-TECTLWMTNFPPSYTQRNIRDLLQDINV-VALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI--- 184 (292)
T ss_dssp EEEC-CSCEEEEECCCTTCCHHHHHHHHHHTTC-CCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---
T ss_pred EEEC-CCCEEEEECCCCCCCHHHHHHHHHHhCC-CeEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---
Confidence 9887 4679999999999999999999999992 47788887664 367899999999999999999999999887
Q ss_pred CCCCccccccCCCCCCCc--ccccccceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCC-CCCcccEEEEEeccH
Q 004041 350 VDRPAKVSFADSFIDPGD--EIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMP-SAKRKDFGFVTFDTH 425 (777)
Q Consensus 350 ~~~~i~v~~a~~~~~~~~--~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~-~g~~kg~afV~F~~~ 425 (777)
.++.|.|.++.+...... ......++|||+|||.. +++++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 589999999876544332 23456689999999999 99999999999999999999999876 599999999999999
Q ss_pred HHHHHHHHHhCCCeeCCCcceEEEEEeecCC
Q 004041 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 426 ~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
++|.+|+ .|||..|.| ..|.+.++.+
T Consensus 265 ~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 9999999 999999986 4455555544
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=7.1e-27 Score=226.90 Aligned_cols=165 Identities=20% Similarity=0.406 Sum_probs=148.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999988766532
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcc
Q 004041 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (777)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~ 355 (777)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (168)
T 1b7f_A 83 GGE----------------------------------------------------------------------------- 85 (168)
T ss_dssp CSS-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred ccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 004041 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (777)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l 435 (777)
....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 012278999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeeCCCcceEEEEE
Q 004041 436 NNAELGEGDNKAKVRA 451 (777)
Q Consensus 436 ~g~~~~g~~~~~~v~~ 451 (777)
||..|.|+...+.|..
T Consensus 152 ~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCCCTTCSSCCEEEE
T ss_pred cCCEecCCCeEEEEEe
Confidence 9999988666666643
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=2.3e-26 Score=222.84 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=146.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999888765431
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCcc
Q 004041 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (777)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~ 355 (777)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh
Q 004041 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (777)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l 435 (777)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|
T Consensus 85 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 85 --------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp --------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 011267999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeeCCCcceEEEE
Q 004041 436 NNAELGEGDNKAKVR 450 (777)
Q Consensus 436 ~g~~~~g~~~~~~v~ 450 (777)
||..|.|..+.+.|.
T Consensus 151 ~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 151 NGQKPSGATEPITVK 165 (167)
T ss_dssp TTCCCTTCSSCCEEE
T ss_pred cCCccCCCccceEEE
Confidence 999999866555554
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2.3e-26 Score=229.30 Aligned_cols=173 Identities=27% Similarity=0.502 Sum_probs=143.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4567899999999999999999999999999999999999999999999999999999999985 888899998887765
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004041 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
...... . .
T Consensus 90 ~~~~~~---------------------------------~-------~-------------------------------- 97 (196)
T 1l3k_A 90 VSREDS---------------------------------Q-------R-------------------------------- 97 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCcccc---------------------------------c-------c--------------------------------
Confidence 321100 0 0
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004041 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.......++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.
T Consensus 98 -------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 98 -------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred -------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 0000123789999999999999999999999999999999999899999999999999999999998
Q ss_pred HhCCCeeCCCcceEEEEEeecCCC
Q 004041 434 SINNAELGEGDNKAKVRARLSRPL 457 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~~ 457 (777)
. ++..|.| ..|.+.++.++
T Consensus 165 ~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 165 Q-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp C-SCCEETT----EECEEEECC--
T ss_pred h-CCcEECC----EEEEEEecCCh
Confidence 5 8999987 33444444443
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.1e-26 Score=233.32 Aligned_cols=179 Identities=20% Similarity=0.438 Sum_probs=146.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999999988654
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004041 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
..... .. .....+..
T Consensus 106 ~~~~~----------~~------------------------------------------~~~~~~~~------------- 120 (216)
T 2qfj_A 106 SNIGQ----------AQ------------------------------------------PIIDQLAE------------- 120 (216)
T ss_dssp SCCGG----------GH------------------------------------------HHHHHHHH-------------
T ss_pred CCccc----------cc------------------------------------------hhhhhhhc-------------
Confidence 32210 00 00000000
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004041 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|+.
T Consensus 121 ---------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 121 ---------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp ---------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ---------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 01223799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCCcceEEEEEeec
Q 004041 434 SINNAELGEGDNKAKVRARLS 454 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~ 454 (777)
.|||..|.|. .+.|..+..
T Consensus 186 ~l~g~~~~g~--~i~V~~a~~ 204 (216)
T 2qfj_A 186 SMNLFDLGGQ--YLRVGKAVT 204 (216)
T ss_dssp HHTTCBCSSS--BCEEEECSS
T ss_pred HccCCEeCCc--EEEEEEecC
Confidence 9999999863 344444433
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=9.7e-27 Score=235.69 Aligned_cols=161 Identities=25% Similarity=0.399 Sum_probs=147.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+|+++|+++|.+||.|+.|+|++++.+++++|||||+|.+.++|.+||..||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred --------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCce
Q 004041 275 --------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (777)
Q Consensus 275 --------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i 346 (777)
...+|||+|||+.+|+++|+++|.+|| .|..|.|+.+. +.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcC--CeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999 89999998873 44699999999999999999999999887
Q ss_pred eccCCCCccccccCCCC
Q 004041 347 LFGVDRPAKVSFADSFI 363 (777)
Q Consensus 347 ~~~~~~~i~v~~a~~~~ 363 (777)
.+++|.|.++.+..
T Consensus 169 ---~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 169 ---NDRKVFVGRFKSRK 182 (213)
T ss_dssp ---TTEECEEEECCCHH
T ss_pred ---CCEEEEEEEcCCCc
Confidence 68999999987643
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=8e-26 Score=228.95 Aligned_cols=168 Identities=20% Similarity=0.349 Sum_probs=143.4
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004041 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
.+.++|||+|||+.+|+++|+++|++|| .|..|.|+++ ..+++++|||||+|.+.++|.+|++.+++..+ .++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCcc
Confidence 4567999999999999999999999999 8999999987 46788999999999999999999999998876 5788
Q ss_pred ccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004041 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 354 i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
+.+.++..... ......++|||+|||..+++++|+++|.+||.|..|.|+++. +.++|||||+|.+.++|++||+
T Consensus 87 i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 87 VRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHH
Confidence 88887754322 122345789999999999999999999999999999999884 4579999999999999999999
Q ss_pred HhCCCeeCCCcceEEEEEeecCC
Q 004041 434 SINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
.|||..|.| ..|.+.++++
T Consensus 162 ~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 162 KMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHTTCEETT----EECEEEECCC
T ss_pred HhCCCEECC----EEEEEEEcCC
Confidence 999999987 3344444443
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-25 Score=215.17 Aligned_cols=164 Identities=21% Similarity=0.402 Sum_probs=145.2
Q ss_pred CCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccc
Q 004041 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (777)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v 356 (777)
++|||+|||..+|+++|+++|+++| .|..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+ .++.+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG--PIANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS--CEEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC--CeEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEE
Confidence 4799999999999999999999999 79999998774 467899999999999999999999999887 5899999
Q ss_pred cccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004041 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
.++...... .....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||
T Consensus 74 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 74 NWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp EECCCCCCC---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEcCCCCCC---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 988665432 22456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcceEEEEEeec
Q 004041 437 NAELGEGDNKAKVRARLS 454 (777)
Q Consensus 437 g~~~~g~~~~~~v~~~~~ 454 (777)
|..|.| ..+.+.++
T Consensus 151 g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 151 GQDLNG----RPLRINWA 164 (166)
T ss_dssp TCEETT----EECEEEES
T ss_pred CCccCC----cEEEEEec
Confidence 999987 44444444
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=1e-25 Score=218.62 Aligned_cols=155 Identities=25% Similarity=0.514 Sum_probs=136.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457899999999999999999999999999999999988999999999999999999999995 467888877665431
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
.. .
T Consensus 80 ~~--------------~--------------------------------------------------------------- 82 (167)
T 2cjk_A 80 PR--------------D--------------------------------------------------------------- 82 (167)
T ss_dssp CH--------------H---------------------------------------------------------------
T ss_pred ch--------------h---------------------------------------------------------------
Confidence 10 0
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004041 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
.....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 83 --------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 83 --------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp --------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred --------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 00112689999999999999999999999999999999998899999999999999999999998
Q ss_pred hCCCeeCCC
Q 004041 435 INNAELGEG 443 (777)
Q Consensus 435 l~g~~~~g~ 443 (777)
||+..|.|.
T Consensus 148 ~~~~~~~g~ 156 (167)
T 2cjk_A 148 NKFIDFKDR 156 (167)
T ss_dssp CSEECSSSS
T ss_pred CCCEEeCCe
Confidence 899999863
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=6.1e-25 Score=214.58 Aligned_cols=168 Identities=26% Similarity=0.504 Sum_probs=145.2
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCC--CCcceEEEeecChhHHHHHHHHHcCCceeccCCC
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG--MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g--~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (777)
+.++|||+|||+.+|+++|+++|.+|| .|..|.++.+. .++ .++|||||+|.+.++|.+|++.|++..+..+..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG--AVYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 457899999999999999999999999 79999998874 343 7899999999999999999999999888766678
Q ss_pred CccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004041 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 353 ~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
.+.+.++...... ....++|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+
T Consensus 79 ~~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 79 PIQMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp CCEEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred ceEEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 8888877654433 2345899999999999999999999999999999999985 5899999999999999999999
Q ss_pred HHhCCCeeCCC-cceEEEE
Q 004041 433 KSINNAELGEG-DNKAKVR 450 (777)
Q Consensus 433 ~~l~g~~~~g~-~~~~~v~ 450 (777)
..|||..+.++ ...+.|.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEE
T ss_pred HHhcCCcccCCCCCCeEEE
Confidence 99999988753 3444443
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=4e-25 Score=215.87 Aligned_cols=162 Identities=28% Similarity=0.534 Sum_probs=144.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCC--CCcceEEEEecCHHHHHHHHHhccCCeee---ccccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCG 269 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g--~~~g~afV~F~s~e~A~~Al~~l~~~~~~---gr~i~ 269 (777)
+.++|||+|||+.+|+++|+++|.+||.|..|+|+.+..++ .++|||||+|.+.++|.+|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998876 89999999999999999999999998775 45555
Q ss_pred cCCCC-------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHc
Q 004041 270 VTPSQ-------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (777)
Q Consensus 270 V~~a~-------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (777)
+.++. ..++|||+|||..+|+++|+++|++|| .|..+.++.+. ++.++|||||+|.+.++|.+|++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 55442 457899999999999999999999999 79999998873 58889999999999999999999999
Q ss_pred CCceeccCCCCccccccC
Q 004041 343 KRDVLFGVDRPAKVSFAD 360 (777)
Q Consensus 343 ~~~i~~~~~~~i~v~~a~ 360 (777)
+..+..+.+++|.|.|++
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 988876667999998874
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=209.98 Aligned_cols=157 Identities=25% Similarity=0.487 Sum_probs=143.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC--
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-- 274 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~-- 274 (777)
++|||+|||..+++++|+++|.+||.|..|.|+.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4799999999999999999999999999999998864 7789999999999999999999999999999999997763
Q ss_pred ------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceec
Q 004041 275 ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (777)
Q Consensus 275 ------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~ 348 (777)
...+|||+|||..+++++|+++|++|| .|..+.++.+ ..++.++|||||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 346899999999999999999999999 7899999877 36788899999999999999999999999887
Q ss_pred cCCCCccccccC
Q 004041 349 GVDRPAKVSFAD 360 (777)
Q Consensus 349 ~~~~~i~v~~a~ 360 (777)
.++.|.|.|+.
T Consensus 155 -~g~~i~v~~a~ 165 (166)
T 3md3_A 155 -NGRPLRINWAA 165 (166)
T ss_dssp -TTEECEEEESC
T ss_pred -CCcEEEEEecC
Confidence 58999998875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=1.7e-24 Score=217.24 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=138.5
Q ss_pred CCCCccccccc-ccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCC
Q 004041 275 DSDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (777)
Q Consensus 275 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (777)
+.++|||+||+ +.+++++|+++|.+|| .|..|+++.+. +|||||+|.+.++|.+|++.||+..+ .+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--~v~~v~i~~~~------~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--NVEKVKFMKSK------PGAAMVEMADGYAVDRAITHLNNNFM---FGQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS--CEEEEEECTTS------TTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--CeEEEEEecCC------CCEEEEEECCHHHHHHHHHHhCCCEE---CCce
Confidence 45789999999 8999999999999999 89999998652 79999999999999999999999887 5888
Q ss_pred ccccccCCCCCCC--------------------------------cccccccceeecCCCCCCCCHHHHHHHhhccCCe-
Q 004041 354 AKVSFADSFIDPG--------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEI- 400 (777)
Q Consensus 354 i~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v- 400 (777)
|.|.++....... ..+..+.++|||+|||+.+++++|+++|++||.|
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 9998875321100 0011345689999999999999999999999999
Q ss_pred -EEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 401 -TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 401 -~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.+......+.+.
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 899988774 55679999999999999999999999999987655444443
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=1e-24 Score=213.36 Aligned_cols=164 Identities=18% Similarity=0.332 Sum_probs=136.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||..+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 356788999999999999999999999998766 333444668899999999999999999995 999999999998877
Q ss_pred CCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCC
Q 004041 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (777)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (777)
+.....
T Consensus 88 ~~~~~~-------------------------------------------------------------------------- 93 (175)
T 1fje_B 88 PKGRDS-------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCSSC--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 643210
Q ss_pred CccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHH
Q 004041 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (777)
Q Consensus 353 ~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~ 432 (777)
......++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|.+|+
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 000133899999999999999999999999988666 457889999999999999999999
Q ss_pred HHhCCCeeCCCcceEEEEEeecCC
Q 004041 433 KSINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
..|||..|.| ..|.+.++++
T Consensus 154 ~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 154 EEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHTEEEETT----EEEEEEECSS
T ss_pred HHhCCCEECC----eEEEEEecCC
Confidence 9999999986 4566666654
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=6.6e-24 Score=206.79 Aligned_cols=152 Identities=23% Similarity=0.445 Sum_probs=134.4
Q ss_pred CCCCcccccccccccHHHHHHHHhhc----CCc-----ceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCc
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHY----GVD-----NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~~-----~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~ 345 (777)
+.++|||+|||..+|+++|+++|+++ |.. .|..+.+... +|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45689999999999999999999999 532 4556665433 899999999999999999 788877
Q ss_pred eeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccH
Q 004041 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425 (777)
Q Consensus 346 i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~ 425 (777)
+ .++++.|.++...... ...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.
T Consensus 75 ~---~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F---QGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E---TTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e---cCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 6 5899999987654433 2358999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCCeeCC
Q 004041 426 DAAVTCAKSINNAELGE 442 (777)
Q Consensus 426 ~~A~~A~~~l~g~~~~g 442 (777)
++|.+|+..|||..|.|
T Consensus 147 ~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp THHHHHHHHHTTCEETT
T ss_pred HHHHHHHHHcCCCEECC
Confidence 99999999999999987
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=2.7e-23 Score=219.69 Aligned_cols=238 Identities=15% Similarity=0.213 Sum_probs=141.2
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (777)
...++|||+|||+.+++++|+ ++|.+||.|..|+|+. +++++|||||+|.+.++|.+||+.||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456789999999999999976 8999999999999885 578999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeec--ChhHHHHH---HHHHcCC
Q 004041 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS--SRSDAMDA---FKRLQKR 344 (777)
Q Consensus 270 V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~--s~e~A~~A---l~~l~~~ 344 (777)
|.++.....+...... ...+......-.+... ...................+.+.-. ....+..+ +..+.+.
T Consensus 84 v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKG-TFVERDRKREKRKPKS--QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEeccCcchhhhhcC-Ccccchhhhhhhhccc--cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9988554432221111 1111000000000000 0000000000000000000000000 00000000 0000000
Q ss_pred ceecc-CCC-----CccccccCCC------------CCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEe
Q 004041 345 DVLFG-VDR-----PAKVSFADSF------------IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA 406 (777)
Q Consensus 345 ~i~~~-~~~-----~i~v~~a~~~------------~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~ 406 (777)
.-... .+. .....+.... .........+.++|||+|||..+++++|+++|.+||.|..|.|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 000 0000000000 00001122356889999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC-C
Q 004041 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-E 442 (777)
Q Consensus 407 ~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~-g 442 (777)
.+. +|||||+|.+.++|.+||..|||..|. |
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 663 589999999999999999999999998 5
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=1.4e-23 Score=209.51 Aligned_cols=168 Identities=20% Similarity=0.355 Sum_probs=139.4
Q ss_pred CCCCcccccccccccHHHHHHHHhhcC----Cc-----ceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCc
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHYG----VD-----NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G----~~-----~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~ 345 (777)
..++|||+|||+.+|+++|+++|.++| .. .|..+.+. .++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999994 22 34455443 34899999999999999999 788876
Q ss_pred eeccCCCCccccccCCCCCCC---------------cccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCC
Q 004041 346 VLFGVDRPAKVSFADSFIDPG---------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410 (777)
Q Consensus 346 i~~~~~~~i~v~~a~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~ 410 (777)
+ .++.|.|.++....... .......++|||+|||..+++++|+++|.+||.|..|.|+.+..
T Consensus 75 ~---~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F---QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp E---TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred E---cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 6 58899999876543211 11124568999999999999999999999999999999999988
Q ss_pred CCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeecCCC
Q 004041 411 SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457 (777)
Q Consensus 411 ~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (777)
++.++|||||+|.+.++|.+|+..|||..|.| ..+.+.++++.
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999999986 45555666553
No 19
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.89 E-value=6.4e-23 Score=199.80 Aligned_cols=152 Identities=25% Similarity=0.482 Sum_probs=136.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcc----C-------ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
..++|||+|||+.+|+++|+++|.+| | .|..+.+. .++|||||+|.+.++|.+|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 66666654 34899999999999999999 7999999
Q ss_pred eccccccCCCCC------CCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHH
Q 004041 264 NGKQCGVTPSQD------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (777)
Q Consensus 264 ~gr~i~V~~a~~------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~A 337 (777)
.|+.|.|.++.. .++|||+|||..+++++|+++|++|| .|..+.++.+. .++.++|||||+|.+.++|.+|
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTS--CEEEEEEEECT-TTCSEEEEEEEEESSTTHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcC--CceEEEEEecC-CCCCcceEEEEEeCCHHHHHHH
Confidence 999999988754 38899999999999999999999999 78999998873 5788999999999999999999
Q ss_pred HHHHcCCceeccCCCCcccccc
Q 004041 338 FKRLQKRDVLFGVDRPAKVSFA 359 (777)
Q Consensus 338 l~~l~~~~i~~~~~~~i~v~~a 359 (777)
++.|++..+ .++.|.|.|+
T Consensus 153 ~~~l~g~~~---~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQL---GDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEE---TTEECEEEEC
T ss_pred HHHcCCCEE---CCeEEEEEeC
Confidence 999999877 5888988876
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=5e-23 Score=206.62 Aligned_cols=145 Identities=25% Similarity=0.318 Sum_probs=127.8
Q ss_pred CcceEEEeCCC-CCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLD-KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp-~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..++|||+||| +.+++++|+++|.+||.|..|+|+.+ .+|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 89999999999999999999999864 3799999999999999999999999999999998754
Q ss_pred C-------------------------------------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEE
Q 004041 274 Q-------------------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310 (777)
Q Consensus 274 ~-------------------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l 310 (777)
. +.++|||+|||+.+|+++|+++|++||.+.+..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 2 123599999999999999999999999433388888
Q ss_pred eecCCCCCCCcceEEEeecChhHHHHHHHHHcCCcee
Q 004041 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (777)
Q Consensus 311 ~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (777)
+.+. +..++||||+|.+.++|.+|+..||+..+.
T Consensus 158 ~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 158 FSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp CSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred EcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 7663 455799999999999999999999998873
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=6.8e-23 Score=214.09 Aligned_cols=160 Identities=26% Similarity=0.472 Sum_probs=145.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+|+++|+++|..||.|..|.|.+ ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4567899999999999999999999999999999964 3799999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCc-eeccCCC
Q 004041 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD-VLFGVDR 352 (777)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~-i~~~~~~ 352 (777)
.+..+|||+|||..+|+++|+++|..|| .|..|.|+.+ .++.++|||||+|.+.++|.+|+..|++.. +....++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 9999999999999999999999999999 8999999888 478899999999999999999999995544 4455688
Q ss_pred CccccccCCCC
Q 004041 353 PAKVSFADSFI 363 (777)
Q Consensus 353 ~i~v~~a~~~~ 363 (777)
++.|.++....
T Consensus 170 ~i~v~~~~~~~ 180 (261)
T 3sde_A 170 PVIVEPMEQFD 180 (261)
T ss_dssp BCEEEECCCEE
T ss_pred eEEEeeccccC
Confidence 99999887543
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.89 E-value=1.6e-23 Score=208.97 Aligned_cols=156 Identities=23% Similarity=0.429 Sum_probs=137.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccC-----------ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG-----------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G-----------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
..++|||+|||+.+++++|+++|.+|| .|..+.+ +.++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 357899999999999999999999994 4444444 456899999999999999999 7999999
Q ss_pred eccccccCCCC--------------------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCC
Q 004041 264 NGKQCGVTPSQ--------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317 (777)
Q Consensus 264 ~gr~i~V~~a~--------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~ 317 (777)
.|+.|.|.++. ..++|||+|||..+++++|+++|.+|| .|..|.++.+. .+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~-~~ 152 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFNLVKDS-AT 152 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--CEEEEEEEECT-TT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CccEEEEeecC-CC
Confidence 99999998763 337899999999999999999999999 78999988773 57
Q ss_pred CCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCC
Q 004041 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI 363 (777)
Q Consensus 318 g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~ 363 (777)
+.++|||||+|.+.++|.+|++.|++..+ .++.|.|.++.+..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLVQRASVGA 195 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEECEEEESCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCC
Confidence 88899999999999999999999999887 68999999987643
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=2.5e-22 Score=205.53 Aligned_cols=165 Identities=16% Similarity=0.331 Sum_probs=137.9
Q ss_pred CCCCCCCcccccccc-cccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccC
Q 004041 272 PSQDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350 (777)
Q Consensus 272 ~a~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~ 350 (777)
...+.++|||+|||. .+++++|+++|++|| .|..|.++.+. ++||||+|.+.++|.+|++.|++..+ .
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G--~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~---~ 98 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---H 98 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHT--CEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---S
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---C
Confidence 345678999999999 999999999999999 79999998764 78999999999999999999999877 5
Q ss_pred CCCccccccCCCCCCC------------------------------cccccccceeecCCCCCCCCHHHHHHHhhccC-C
Q 004041 351 DRPAKVSFADSFIDPG------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYG-E 399 (777)
Q Consensus 351 ~~~i~v~~a~~~~~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G-~ 399 (777)
++.|.|.++....... .....+.++|||+|||..+++++|+++|.+|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 8999998876431100 01123468999999999999999999999999 9
Q ss_pred eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC-CCcceEEEEEeecCC
Q 004041 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGDNKAKVRARLSRP 456 (777)
Q Consensus 400 v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~-g~~~~~~v~~~~~~~ 456 (777)
|..|.|+.. .+|||||+|.+.++|.+|+..|||..|. + ..+.+.++++
T Consensus 179 i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~~ 227 (229)
T 2adc_A 179 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSKS 227 (229)
T ss_dssp EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECSS
T ss_pred eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEecC
Confidence 999999653 3789999999999999999999999997 5 3344455443
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=7.5e-23 Score=213.74 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=136.2
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
..++|||+|||..+|+++|+++|..|| .|..|.+.++ +|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~l 88 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYG--EPSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL---KSRPL 88 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGC--CCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE---CCcee
Confidence 446899999999999999999999999 7888888654 89999999999999999999999877 58999
Q ss_pred cccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004041 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
.|.++.. .++|||+|||..+|+++|+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..
T Consensus 89 ~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 89 RIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 9998754 478999999999999999999999999999999999 5899999999999999999999999
Q ss_pred hCCCeeCCCcceEEEEEeecCC
Q 004041 435 INNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 435 l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
||+..+........|.+.++.+
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCC
T ss_pred hcCCeEEecCCCceEEEeeccc
Confidence 9654443222234455555443
No 25
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=4e-22 Score=210.87 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=150.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||+.+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999998763
Q ss_pred ---------CCCCcccccccccc-cHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCC
Q 004041 275 ---------DSDTLFLGNICKTW-TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (777)
Q Consensus 275 ---------~~~~l~V~nLp~~~-te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (777)
..++|||+|||..+ ++++|+++|+.|| .|..+.|+.+. ++.++|+|||+|.+.++|.+|+..|++.
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 34689999999995 9999999999999 78888888774 6888999999999999999999999998
Q ss_pred ceeccCCCCccccccCCCCC
Q 004041 345 DVLFGVDRPAKVSFADSFID 364 (777)
Q Consensus 345 ~i~~~~~~~i~v~~a~~~~~ 364 (777)
.+ .+++|.|.|+.+...
T Consensus 250 ~~---~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 SL---GGSHLRVSFCAPGPP 266 (284)
T ss_dssp EE---TTEECEEEECCSSSC
T ss_pred cc---CCeEEEEEEecCCCc
Confidence 88 689999999876543
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=6.8e-22 Score=202.32 Aligned_cols=156 Identities=27% Similarity=0.377 Sum_probs=137.9
Q ss_pred cCCcceEEEeCCCC-CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004041 193 KRKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 193 ~~~~~~lfV~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (777)
....++|||+|||+ .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578899999999 99999999999999999999999764 7899999999999999999999999999999997
Q ss_pred CCCC-----------------------------------------CCCcccccccccccHHHHHHHHhhcCCcceeEeEE
Q 004041 272 PSQD-----------------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310 (777)
Q Consensus 272 ~a~~-----------------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l 310 (777)
++.. .++|||+|||..+++++|+++|.+||. .|..|.+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC-CEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC-CeeEEEE
Confidence 6632 367999999999999999999999982 4778888
Q ss_pred eecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCC
Q 004041 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (777)
Q Consensus 311 ~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~ 362 (777)
+.. .++||||+|.+.++|.+|+..|++..+. .+++|.|.|+.+.
T Consensus 185 ~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK------DRKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKST 228 (229)
T ss_dssp CSS------STTCEEEEESSHHHHHHHHHHHTTCBSS--SSCBCEEEECSSC
T ss_pred EEC------CCcEEEEEECCHHHHHHHHHHHCCCccC--CCCeEEEEEecCC
Confidence 653 2799999999999999999999998772 3899999998753
No 27
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=7.6e-22 Score=197.09 Aligned_cols=153 Identities=16% Similarity=0.318 Sum_probs=131.6
Q ss_pred CCCcccccccc-cccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCc
Q 004041 276 SDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (777)
Q Consensus 276 ~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i 354 (777)
.++|||+|||. .+++++|+++|.+|| .|..|.++.+. +|||||+|.+.++|.+|+..|++..+ .++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G--~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC--CCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee---cCeEE
Confidence 46899999999 999999999999999 78899888763 78999999999999999999999877 58899
Q ss_pred cccccCCCCCCC------------------------------cccccccceeecCCCCCCCCHHHHHHHhhccC-CeEEE
Q 004041 355 KVSFADSFIDPG------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYG-EITKI 403 (777)
Q Consensus 355 ~v~~a~~~~~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G-~v~~v 403 (777)
.|.++....... .....+.++|||+|||..+++++|+++|.+|| .|..|
T Consensus 72 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v 151 (198)
T 1qm9_A 72 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 151 (198)
T ss_dssp EEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEE
T ss_pred EEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEE
Confidence 998876432110 01123468999999999999999999999999 99999
Q ss_pred EEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC-CCc
Q 004041 404 ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGD 444 (777)
Q Consensus 404 ~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~-g~~ 444 (777)
.|+.+. +|||||+|.+.++|.+|+..|||..|. +..
T Consensus 152 ~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 152 KFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp EESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred EEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 997642 789999999999999999999999998 543
No 28
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=8.1e-22 Score=196.88 Aligned_cols=152 Identities=28% Similarity=0.391 Sum_probs=135.1
Q ss_pred cceEEEeCCCC-CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 196 EFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 196 ~~~lfV~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
.++|||+|||. .+++++|+++|.+||.|..|+|+.+. +|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999998763 7899999999999999999999999999999996552
Q ss_pred -----------------------------------------CCCCcccccccccccHHHHHHHHhhcCCcceeEeEEeec
Q 004041 275 -----------------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313 (777)
Q Consensus 275 -----------------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d 313 (777)
+.++|||+|||..+++++|+++|.++|. .|..+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTS-CCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCC-CceEEEEEeC
Confidence 1467999999999999999999999982 4777887654
Q ss_pred CCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCC
Q 004041 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (777)
Q Consensus 314 ~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~ 361 (777)
. +|+|||+|.+.++|.+|+..|++..+. .+++|.|.|+.+
T Consensus 157 ~------~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 D------RKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKS 196 (198)
T ss_dssp T------SSCEEEECSSHHHHHHHHHHHTSSCCS--SCCSCCEEEECC
T ss_pred C------CcEEEEEeCCHHHHHHHHHHhcCCccC--CCCeEEEEeecc
Confidence 2 799999999999999999999998772 389999999865
No 29
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=5.4e-22 Score=210.74 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=139.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...+|||+|||+.+++++|+++|..|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 477899999999999999999999999 999999998765 788999999999999999999999999999999999875
Q ss_pred C-------------CCCCccccccccc-ccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHH
Q 004041 274 Q-------------DSDTLFLGNICKT-WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (777)
Q Consensus 274 ~-------------~~~~l~V~nLp~~-~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (777)
. ..++|||+|||.. +++++|+++|.+|| .|..|.++.+...++.++|||||+|.+.++|.+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 3 2368999999999 99999999999999 79999998874435889999999999999999999
Q ss_pred HHcCCceeccCCCCccccccCCC
Q 004041 340 RLQKRDVLFGVDRPAKVSFADSF 362 (777)
Q Consensus 340 ~l~~~~i~~~~~~~i~v~~a~~~ 362 (777)
.|++..+ .++.|.|.|+.+.
T Consensus 272 ~l~g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLL---GNREISVSLADKK 291 (292)
T ss_dssp GGTTEEE---TTEEEEEEECCCC
T ss_pred HhcCCEE---CCcEEEEEEecCC
Confidence 9999876 5899999998753
No 30
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.5e-18 Score=165.13 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=104.6
Q ss_pred eEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceec----cCCCCccccccC-CCCCCCcccccccceeecCCCC
Q 004041 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF----GVDRPAKVSFAD-SFIDPGDEIMAQVKTVFVDGLP 382 (777)
Q Consensus 308 i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~----~~~~~i~v~~a~-~~~~~~~~~~~~~~~l~V~nLp 382 (777)
+.|+.+. .+++||+||+|.+.++|.+|++.+++..... ..+......... .............++|||+|||
T Consensus 3 ~kl~ln~---~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILNG---KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEC---SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEecC---ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4455442 3579999999999999999998876432110 011111111111 1111122233456899999999
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEeecCC
Q 004041 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 383 ~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.| ..+.+.++++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 999999999999999999999999999899999999999999999999999999999986 3344444444
No 31
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=3.9e-18 Score=189.93 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=73.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..||+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----RRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC----EEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 3444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
|.++.+
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 444444
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=2.9e-17 Score=148.79 Aligned_cols=95 Identities=22% Similarity=0.418 Sum_probs=71.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
..+|||+|||+.+++++|+++|.+||.|..|+|+.+. +.++|||||+|.+.++|++||+.||+..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999875 44799999999999999999999999999999999987632
Q ss_pred --------------CCCcccccccccccHHH
Q 004041 276 --------------SDTLFLGNICKTWTKEA 292 (777)
Q Consensus 276 --------------~~~l~V~nLp~~~te~~ 292 (777)
.++|||+|||..+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 25799999999998763
No 33
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=141.43 Aligned_cols=81 Identities=25% Similarity=0.467 Sum_probs=74.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+|+++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|++||+.|||..|.| ..+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 44789999999999999999999999999999999999999999999999999999999999999999987 45555
Q ss_pred eecCC
Q 004041 452 RLSRP 456 (777)
Q Consensus 452 ~~~~~ 456 (777)
.+++|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 66665
No 34
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=7.4e-17 Score=153.44 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=99.5
Q ss_pred CCCCcceEEEeecChhHHHHHHHHH-cCCceeccCCCCccccccCCCC-----------CCCcccccccceeecCCCCCC
Q 004041 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFI-----------DPGDEIMAQVKTVFVDGLPAS 384 (777)
Q Consensus 317 ~g~~kg~afV~F~s~e~A~~Al~~l-~~~~i~~~~~~~i~v~~a~~~~-----------~~~~~~~~~~~~l~V~nLp~~ 384 (777)
....+|+++|+|.+.++|.+|++.+ ++..+ .+ .+.+.++.... ..........++|||+|||+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 3466899999999999999999999 77766 35 77777765421 112233345689999999999
Q ss_pred CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 385 ~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|.|..
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 999999999999999999999876 4889999999999999999999999998733
No 35
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2e-16 Score=151.47 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=74.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 355899999999999999999999999999999999999999999999999999999999999999999986 4444
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 4555443
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=139.23 Aligned_cols=83 Identities=23% Similarity=0.427 Sum_probs=78.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
-...++|||+|||+.+|+++|+++|.+||.|..|+|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004041 273 SQD 275 (777)
Q Consensus 273 a~~ 275 (777)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 764
No 37
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=5.7e-17 Score=165.11 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=68.6
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
.++|||+||++.+|+++|+++|.+|| .|+.|.|++++.+++++|||||+|.+.++|++||..||+..|.+..
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 47899999999999999999999999 9999999999999999999999999999999999999999999744
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=136.85 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=68.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.++|||+||++.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999987
No 39
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=140.83 Aligned_cols=83 Identities=19% Similarity=0.454 Sum_probs=74.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+||..|||..|.+ ..|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KRLK 115 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 445899999999999999999999999999999999999999999999999999999999999999999986 3455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 5555543
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=132.17 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=73.3
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.+ ..+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 45899999999999999999999999999999999999899999999999999999999999999999986 33444
Q ss_pred eecCCC
Q 004041 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.++++.
T Consensus 83 ~~a~~~ 88 (99)
T 1whw_A 83 LPSTIK 88 (99)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 555443
No 41
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=134.84 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=72.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||..||+ .|.+ ..|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----RKAN 89 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----EEEE
Confidence 4558999999999999999999999999999999999999999999999999999999999999998 8876 3444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 445443
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=131.12 Aligned_cols=72 Identities=25% Similarity=0.488 Sum_probs=68.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999873
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=1.3e-15 Score=146.15 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=106.5
Q ss_pred EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC-------eeecccccc------------CCCCCCCCccccccc
Q 004041 225 EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-------VINGKQCGV------------TPSQDSDTLFLGNIC 285 (777)
Q Consensus 225 ~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-------~~~gr~i~V------------~~a~~~~~l~V~nLp 285 (777)
.++|+++.. .++|||||+|.+.++|++|++.+++. .+.+..... .......+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466776644 68999999999999999999887632 222222211 112345799999999
Q ss_pred ccccHHHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCC
Q 004041 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364 (777)
Q Consensus 286 ~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~ 364 (777)
+.+++++|+++|++|| .|..|.|+.+. .++.++|||||+|.+.++|.+|++.|++..+ .+++|.|.++.....
T Consensus 80 ~~~~~~~l~~~F~~~G--~v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYG--RVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHS--CEEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcC--CeEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCC
Confidence 9999999999999999 78999998773 5788999999999999999999999998776 589999999876543
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=5e-16 Score=134.29 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=72.0
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC-CeeCCCcceEEEE
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKVR 450 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v~ 450 (777)
+++|||+|||..+|+++|+++|++|| .|..|.|++++.++.++|||||+|.+.++|++||+.|++ ..|.| ..|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEE
Confidence 37899999999999999999999999 899999999999999999999999999999999998754 56776 5566
Q ss_pred EeecCCCC
Q 004041 451 ARLSRPLQ 458 (777)
Q Consensus 451 ~~~~~~~~ 458 (777)
+.++.|+.
T Consensus 77 V~~a~~~~ 84 (91)
T 2lxi_A 77 MHYSDPKP 84 (91)
T ss_dssp EECCCSCC
T ss_pred EEEcCCCC
Confidence 66666543
No 45
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.9e-15 Score=139.08 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=72.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.+.. +.|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP--ISVD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE--EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998743 4444
Q ss_pred Eee
Q 004041 451 ARL 453 (777)
Q Consensus 451 ~~~ 453 (777)
.+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 443
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=131.81 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=73.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v-~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
..++|||+|||..+++++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||..|||..|.+ ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 35899999999999999999999999999999 999998899999999999999999999999999999986 4455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++.+.
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 5555543
No 47
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=1.9e-15 Score=146.09 Aligned_cols=116 Identities=23% Similarity=0.355 Sum_probs=69.5
Q ss_pred EeecChhHHHHHHHHHcCCceeccCCCCccccccCCC---------------CCCCcccccccceeecCCCCCCCCHHHH
Q 004041 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---------------IDPGDEIMAQVKTVFVDGLPASWDEDRV 390 (777)
Q Consensus 326 V~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~---------------~~~~~~~~~~~~~l~V~nLp~~~t~~dL 390 (777)
.+|...++|..|+..|+...... .++.+...+.... ..+........++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~-kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHR-KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccc-cCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 67778888888887776644321 1233333221100 1111222344578999999999999999
Q ss_pred HHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 391 ~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 9999999999999999999999999999999999999999999999999986
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=132.36 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=78.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeE-EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~-~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
..++|||+|||..+++++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|++|+..|||..|.+....+.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 458999999999999999999999999999 9999999999999999999999999999999999999999877566677
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 7777653
No 49
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=132.25 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=74.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 4555
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 5666553
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=1.4e-14 Score=131.05 Aligned_cols=83 Identities=20% Similarity=0.394 Sum_probs=74.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 455899999999999999999999999999999999998899999999999999999999999999999987 4455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 89 V~~a~~~ 95 (115)
T 2dgo_A 89 TNWATRK 95 (115)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 5555543
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=134.53 Aligned_cols=71 Identities=24% Similarity=0.462 Sum_probs=67.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
..++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34899999999999999999999999999999999998 899999999999999999999999999999873
No 52
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=8.7e-16 Score=143.11 Aligned_cols=113 Identities=16% Similarity=0.268 Sum_probs=71.7
Q ss_pred ceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCCCCCCcccccccceeecCCCCCCCCHHHHHHHhhccCCeE
Q 004041 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401 (777)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~ 401 (777)
-++|+++.+...+..|++.+++.... +. ....+..+ .......++|||+|||..+++++|+++|++||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~---g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM---GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCC---CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 45677888888888888887765442 11 11222222 12224568999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 402 ~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.|.|+.+..+++++|||||+|.+.++|++||..|||..|.|.
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 999999988999999999999999999999999999999874
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=5.8e-15 Score=125.07 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=72.3
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEee
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (777)
.+|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.| ..+.+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 4455555
Q ss_pred cCC
Q 004041 454 SRP 456 (777)
Q Consensus 454 ~~~ 456 (777)
+++
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 544
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=131.62 Aligned_cols=83 Identities=24% Similarity=0.531 Sum_probs=75.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+ ..+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 4555
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 86 V~~a~~~ 92 (102)
T 2cqb_A 86 VNLAKPM 92 (102)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 5666554
No 55
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=7.4e-15 Score=132.84 Aligned_cols=82 Identities=20% Similarity=0.441 Sum_probs=74.7
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..||+..|.+ ..|.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 45899999999999999999999999999999999999899999999999999999999999999999986 45556
Q ss_pred eecCCC
Q 004041 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.++++.
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 666554
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=126.70 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=68.0
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999987
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=133.63 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||+.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 3
No 58
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=132.09 Aligned_cols=79 Identities=13% Similarity=0.307 Sum_probs=70.1
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCC--eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe----eCCCcce
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE----LGEGDNK 446 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~--v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~----~~g~~~~ 446 (777)
-++|||+|||+.+|+++|+++|++||. |..|.|++++.+++++|||||+|.+.++|++||+.|||.. |+|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G---- 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG---- 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT----
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC----
Confidence 389999999999999999999999995 6799999999999999999999999999999999999974 765
Q ss_pred EEEEEeecC
Q 004041 447 AKVRARLSR 455 (777)
Q Consensus 447 ~~v~~~~~~ 455 (777)
..|.+.+++
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 445555554
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=129.59 Aligned_cols=72 Identities=21% Similarity=0.522 Sum_probs=68.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||. ||+..|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 345899999999999999999999999999999999999999999999999999999999998 999999873
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=129.08 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=73.0
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP---SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~---~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+.. ++.++|||||+|.+.++|++||..|||..|.+ ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 458999999999999999999999999999999998876 66899999999999999999999999999986 45
Q ss_pred EEEeecCCC
Q 004041 449 VRARLSRPL 457 (777)
Q Consensus 449 v~~~~~~~~ 457 (777)
+.+.++++.
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 555666543
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=132.12 Aligned_cols=72 Identities=24% Similarity=0.419 Sum_probs=69.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345899999999999999999999999999999999999999999999999999999999999999999987
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=128.14 Aligned_cols=82 Identities=20% Similarity=0.416 Sum_probs=73.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.+ ..+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345899999999999999999999999999999999998 89999999999999999999999999999986 3455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 5555543
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.9e-15 Score=130.29 Aligned_cols=72 Identities=24% Similarity=0.365 Sum_probs=69.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 345899999999999999999999999999999999999899999999999999999999999999999987
No 64
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=131.06 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=74.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc-CCeeeccccccCCCC
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK-NPVINGKQCGVTPSQ 274 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~-~~~~~gr~i~V~~a~ 274 (777)
.+|||+|||+.+|+++|+++|.+|| .|..|+|++++.++.++|||||+|.+.++|++||+.|+ +..|.|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999999999999999999999999999999875 557999999999986
Q ss_pred CCC
Q 004041 275 DSD 277 (777)
Q Consensus 275 ~~~ 277 (777)
+..
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=7.9e-15 Score=128.06 Aligned_cols=80 Identities=16% Similarity=0.436 Sum_probs=72.8
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.| ..+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987 445555
Q ss_pred ecCC
Q 004041 453 LSRP 456 (777)
Q Consensus 453 ~~~~ 456 (777)
++++
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 66
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=126.17 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=73.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.+ ..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999999986 4455
Q ss_pred EeecC
Q 004041 451 ARLSR 455 (777)
Q Consensus 451 ~~~~~ 455 (777)
+.+++
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 55543
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=129.19 Aligned_cols=74 Identities=23% Similarity=0.514 Sum_probs=69.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.+..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998744
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=6.7e-15 Score=125.29 Aligned_cols=71 Identities=24% Similarity=0.496 Sum_probs=68.5
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999999999999999999999999999998999999999999999999999999999999987
No 69
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=131.83 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=74.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCc--eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC----eeeccccc
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE--VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQCG 269 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~--v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~----~~~gr~i~ 269 (777)
-.||||+|||+.+|+++|+++|++||. |..|+|++++.+++++|||||+|.+.++|.+||+.||+. .|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 457999999999999999999999995 679999999999999999999999999999999999986 58999999
Q ss_pred cCCCCC
Q 004041 270 VTPSQD 275 (777)
Q Consensus 270 V~~a~~ 275 (777)
|.++++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998764
No 70
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=128.78 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=67.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc-ceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD-NKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~-~~~~v~ 450 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.++. ....|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4589999999999999999999999999999999876 69999999999999999999999998622 224556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++.+.
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 6666553
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=128.86 Aligned_cols=70 Identities=26% Similarity=0.509 Sum_probs=66.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||..|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35589999999999999999999999999999999998 89999999999999999999999999999986
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=129.88 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=74.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC------CCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN------NAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~------g~~~~g~~ 444 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| +..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-- 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-- 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC--
Confidence 345899999999999999999999999999999999999999999999999999999999999999 999986
Q ss_pred ceEEEEEeecCCC
Q 004041 445 NKAKVRARLSRPL 457 (777)
Q Consensus 445 ~~~~v~~~~~~~~ 457 (777)
..|.+.++.+.
T Consensus 91 --~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 --RQLKVDLAVTR 101 (111)
T ss_dssp --CEEEEECCCCC
T ss_pred --EEEEEEECCCC
Confidence 34455555543
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.6e-14 Score=127.87 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=71.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+|| |..|.|+.+..+++++|||||+|.+.++|++|| .|||..|.+ ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----RSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----EECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----eEEE
Confidence 3458999999999999999999999997 999999999999999999999999999999999 899999986 4455
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 87 V~~a~~ 92 (103)
T 2dng_A 87 VDIAEG 92 (103)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 555554
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=129.42 Aligned_cols=73 Identities=22% Similarity=0.474 Sum_probs=68.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeec-CCCCCcccEEEEEeccHHHHHHHHHHh-CCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN-MPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~-~~~g~~kg~afV~F~~~~~A~~A~~~l-~g~~~~g~ 443 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||..| |+..|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 45589999999999999999999999999999999999 789999999999999999999999999 99999873
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=3.8e-15 Score=131.15 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=68.0
Q ss_pred cceeecCCCCC------CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 373 VKTVFVDGLPA------SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~------~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.++|||+|||. .+++++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|++||..|||..|.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 48999999999 99999999999999999999999999999999999999999999999999999999986
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=128.67 Aligned_cols=81 Identities=23% Similarity=0.522 Sum_probs=71.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~-g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.+.++|||+|||..+++++|+++|.+|| |..|.|+.+..+ ++++|||||+|.+.++|++|| .||+..|.+ ..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----KRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----EEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----cEE
Confidence 3458999999999999999999999999 999999999887 999999999999999999999 899999986 445
Q ss_pred EEeecCCC
Q 004041 450 RARLSRPL 457 (777)
Q Consensus 450 ~~~~~~~~ 457 (777)
.+.++++.
T Consensus 87 ~V~~a~~~ 94 (104)
T 1wi8_A 87 RVDVADQA 94 (104)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 55555543
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=130.59 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=74.6
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|++||..|||..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3458999999999999999999999999999 69999998999999999999999999999999999999986
Q ss_pred CcceEEEEEeecCCC
Q 004041 443 GDNKAKVRARLSRPL 457 (777)
Q Consensus 443 ~~~~~~v~~~~~~~~ 457 (777)
..+.+.++++.
T Consensus 93 ----~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 ----SKLKVSLARKK 103 (113)
T ss_dssp ----EECEEECSSCC
T ss_pred ----CEEEEEECCCC
Confidence 45556666553
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=4.4e-15 Score=134.30 Aligned_cols=103 Identities=16% Similarity=0.304 Sum_probs=92.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||+.+++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4578999999999999999999999999999999865 4569999999999999999999999999999999999886
Q ss_pred CCCCcccccccccccHHHHHHHHhhcCC
Q 004041 275 DSDTLFLGNICKTWTKEALKEKLKHYGV 302 (777)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~ 302 (777)
.... ..+++...++++|.++|+++|.
T Consensus 84 ~~~~--~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA--FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH--TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh--hhhhhHhHhHHHHHHHHHHhCC
Confidence 5432 2778888999999999999983
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.3e-14 Score=129.03 Aligned_cols=82 Identities=15% Similarity=0.381 Sum_probs=71.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCee-CCCcceEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~-~g~~~~~~v 449 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||..|||..+ .+....+.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999999886 222344444
Q ss_pred EEe
Q 004041 450 RAR 452 (777)
Q Consensus 450 ~~~ 452 (777)
..+
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 433
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=3e-15 Score=152.32 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccC--ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
..++|||+||++.+|+++|+++|.+|| .|+.|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 004041 273 S 273 (777)
Q Consensus 273 a 273 (777)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 5
No 81
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=125.38 Aligned_cols=72 Identities=28% Similarity=0.546 Sum_probs=68.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986
No 82
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1.3e-14 Score=130.05 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=73.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEEE
Confidence 445899999999999999999999999999999999999999999999999999999999999999999986 3444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 100 V~~a~~ 105 (110)
T 1oo0_B 100 VDWCFV 105 (110)
T ss_dssp EEESEE
T ss_pred EEEccc
Confidence 444443
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=130.50 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=74.4
Q ss_pred ccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004041 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||.. |+..|.+ ..|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l 98 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVV 98 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEE
Confidence 34568999999999999999999999999999999999999999999999999999999999997 9999986 455
Q ss_pred EEeecCCC
Q 004041 450 RARLSRPL 457 (777)
Q Consensus 450 ~~~~~~~~ 457 (777)
.+.++.+.
T Consensus 99 ~V~~a~~~ 106 (116)
T 1x4b_A 99 EPKRAVAR 106 (116)
T ss_dssp EEECCSSC
T ss_pred EEEECCCC
Confidence 66666554
No 84
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=3.7e-15 Score=128.50 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=72.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccC--ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
.+|||+|||+.+++++|+++|.+|| .|..|+|+.++.+++++|||||+|.+.++|++|++.||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=2.9e-15 Score=129.24 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=65.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
.+|||+|||..+++++|+++|.+|| .|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999998743
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=128.06 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=72.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.|.. +.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP--ISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE--EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998743 4444
Q ss_pred Eee
Q 004041 451 ARL 453 (777)
Q Consensus 451 ~~~ 453 (777)
.+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 433
No 87
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.7e-14 Score=123.92 Aligned_cols=80 Identities=10% Similarity=0.321 Sum_probs=72.8
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+ .|||..|.| ..+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEE
Confidence 3589999999999999999999999999999999999989999999999999999999999 899999987 44555
Q ss_pred eecCC
Q 004041 452 RLSRP 456 (777)
Q Consensus 452 ~~~~~ 456 (777)
.++++
T Consensus 80 ~~a~~ 84 (89)
T 3ucg_A 80 IPKRT 84 (89)
T ss_dssp EETTT
T ss_pred EEccC
Confidence 56554
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=3e-14 Score=126.54 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=66.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45899999999999999999999999999999999997 79999999999999999999999999999986
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=1.5e-14 Score=130.81 Aligned_cols=78 Identities=23% Similarity=0.401 Sum_probs=68.4
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
..+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||..|||..|.| ..+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEE
Confidence 3689999999999999999999999999999999985 4579999999999999999999999999987 334444
Q ss_pred ecCC
Q 004041 453 LSRP 456 (777)
Q Consensus 453 ~~~~ 456 (777)
++.+
T Consensus 79 ~a~~ 82 (115)
T 4f25_A 79 RFKS 82 (115)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 4443
No 90
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=3.4e-14 Score=125.78 Aligned_cols=76 Identities=24% Similarity=0.554 Sum_probs=66.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|++ +||||+|.+.++|++||..||+..|.+ ..+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEG----ENIE 76 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCC----CEEE
Confidence 4558999999999999999999999999999999873 499999999999999999999999986 4555
Q ss_pred EeecCCCC
Q 004041 451 ARLSRPLQ 458 (777)
Q Consensus 451 ~~~~~~~~ 458 (777)
+.++++..
T Consensus 77 v~~a~~~~ 84 (103)
T 2dgu_A 77 IVFAKPPD 84 (103)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 55555543
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=127.27 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=71.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 87 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPMH 87 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEEE
Confidence 345899999999999999999999999999999999987 59999999999999999999999999999986 3344
Q ss_pred EeecC
Q 004041 451 ARLSR 455 (777)
Q Consensus 451 ~~~~~ 455 (777)
+.+++
T Consensus 88 v~~a~ 92 (114)
T 2do0_A 88 VKMDE 92 (114)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 44444
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=128.20 Aligned_cols=73 Identities=26% Similarity=0.479 Sum_probs=69.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|.|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4458999999999999999999999999999999999999999999999999999999999999999999873
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=128.34 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=67.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe-eCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKN-YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-LGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~-~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~-~~g~ 443 (777)
+.++|||+|||..+++++|+++|.+ ||.|..|.|+.+. +++++|||||+|.+.++|.+||..||+.. |.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 4589999999999999999999999 9999999999998 99999999999999999999999999999 8863
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=127.86 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=70.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
..++|||+|||..+|+++|+++|++||.|..|.|+++.. ++++|||||+|.+.++|++||. +|+..|.|..+.+.+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 348999999999999999999999999999999999987 9999999999999999999999 9999999866555443
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=127.96 Aligned_cols=83 Identities=22% Similarity=0.431 Sum_probs=74.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|.+ ..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~l~ 88 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RNID 88 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999998 9999987 4566
Q ss_pred EeecCCCC
Q 004041 451 ARLSRPLQ 458 (777)
Q Consensus 451 ~~~~~~~~ 458 (777)
+.++.+..
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 66666543
No 96
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=1.1e-14 Score=127.15 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=80.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46799999999999999999999999999999999988999999999999999999999999999999999999999977
Q ss_pred CCCcccc
Q 004041 276 SDTLFLG 282 (777)
Q Consensus 276 ~~~l~V~ 282 (777)
.......
T Consensus 82 ~~~~~~~ 88 (96)
T 2x1f_A 82 SDISGVS 88 (96)
T ss_dssp SSGGGHH
T ss_pred CCCCCcc
Confidence 7655443
No 97
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=1.8e-14 Score=121.95 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=76.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCC
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (777)
++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999987654
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=125.62 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=70.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~--------v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45589999999999999999999999999999 9999999999999999999999999999999999999987
Q ss_pred Ccc
Q 004041 443 GDN 445 (777)
Q Consensus 443 ~~~ 445 (777)
..+
T Consensus 91 ~~l 93 (99)
T 2la6_A 91 NPI 93 (99)
T ss_dssp SBC
T ss_pred cEE
Confidence 443
No 99
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6e-14 Score=124.13 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=70.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||..|||..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 4558999999999999999999999999999999998854 389999999999999999999999999986 4445
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 5555443
No 100
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=123.71 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=75.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999998765
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 101
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=124.95 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=77.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 102
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=123.79 Aligned_cols=70 Identities=20% Similarity=0.427 Sum_probs=66.5
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC-cccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK-RKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~-~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|++|+..|||..|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 48999999999999999999999999999999999887765 89999999999999999999999999987
No 103
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.5e-14 Score=125.77 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=69.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|++||+.||+..|.+ ..|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 34589999999999999999999999999999999654 5679999999999999999999999999986 4556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 6666553
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.6e-14 Score=133.39 Aligned_cols=82 Identities=26% Similarity=0.384 Sum_probs=73.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|. .|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~----~l~ 119 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR----RIR 119 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----CCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE----EEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999873 344
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 455444
No 105
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-14 Score=123.84 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=70.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||..||+..|.+ ..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 34589999999999999999999999999999999998543 68999999999999999999999999986 4555
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 5666553
No 106
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=127.87 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=78.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 107
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=1.5e-14 Score=123.05 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=76.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999875
No 108
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=123.56 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=67.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+.. ++++|||||+|.+.++|++|+..|||..|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3458999999999999999999999999999999999875 8999999999999999999999999999986
No 109
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=126.13 Aligned_cols=84 Identities=33% Similarity=0.471 Sum_probs=78.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6554
No 110
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=125.64 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=71.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.|||..|.+ ..+.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 89 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVKL 89 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEE
Confidence 34899999999999999999999999999989899988999999999999999999999999999999987 33444
Q ss_pred eecC
Q 004041 452 RLSR 455 (777)
Q Consensus 452 ~~~~ 455 (777)
.+++
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 4443
No 111
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=127.14 Aligned_cols=84 Identities=26% Similarity=0.436 Sum_probs=78.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
....
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 6543
No 112
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=3.5e-14 Score=122.81 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=66.0
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +++++|||||+|.+.++|++|+..|||..|.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4589999999999999999999999999999999984 788999999999999999999999999999874
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.1e-14 Score=129.30 Aligned_cols=74 Identities=22% Similarity=0.428 Sum_probs=69.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45689999999999999999999999999999999999989999999999999999999999999999998733
No 114
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=3.5e-14 Score=126.54 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=68.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 445899999999999999999999999999999999998 99999999999999999999999999999987
No 115
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=3.5e-14 Score=128.37 Aligned_cols=83 Identities=24% Similarity=0.514 Sum_probs=78.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 554
No 116
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=2.7e-14 Score=129.10 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=77.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|+|+.+..++.+++||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45779999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=1.7e-14 Score=139.36 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=77.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 118
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=7.2e-15 Score=129.39 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=75.8
Q ss_pred CcceEEEeCCCC------CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec-cc
Q 004041 195 KEFEVFVGGLDK------DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQ 267 (777)
Q Consensus 195 ~~~~lfV~nLp~------~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-r~ 267 (777)
..++|||+|||+ .+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCC
Q 004041 268 CGVTPSQ 274 (777)
Q Consensus 268 i~V~~a~ 274 (777)
|.|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9998763
No 119
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=124.96 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=77.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEE-EEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
...++|||+|||..+++++|+++|.+||.|..| .|+.++.++.+++||||+|.+.++|++|+..||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999 9999988999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 7544
No 120
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=124.56 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=67.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC--CeeCCCcceEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGDNKAK 448 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g--~~~~g~~~~~~ 448 (777)
.+.++|||+|||+.+++++|+++|.+||.|+.|.|+++ +|||||+|.+.++|++||..|++ ..|.| ..
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~ 83 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QP 83 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC----EE
Confidence 34589999999999999999999999999999999875 78999999999999999998874 67876 55
Q ss_pred EEEeecCCCC
Q 004041 449 VRARLSRPLQ 458 (777)
Q Consensus 449 v~~~~~~~~~ 458 (777)
+.+.+++++.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 6666665543
No 121
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=124.28 Aligned_cols=81 Identities=27% Similarity=0.487 Sum_probs=76.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999998875
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=135.93 Aligned_cols=71 Identities=11% Similarity=0.269 Sum_probs=67.7
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||+.+++++|+++|.+|| .|..|.|+.+..+|+++|||||+|.+.++|++||..|||..|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 348999999999999999999999999 99999999999999999999999999999999999999999987
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=127.41 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=64.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..++|||+|||+.+|+++|+++|.+||.| .|.|+.++ +++++|||||+|.+.++|++||. +|+..|.+..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 44899999999999999999999999955 99999997 89999999999999999999995 8999998643
No 124
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=124.59 Aligned_cols=82 Identities=29% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 346789999999999999999999999999999999998899999999999999999999999 9999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=127.13 Aligned_cols=74 Identities=19% Similarity=0.512 Sum_probs=69.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|++.|||..|.|..
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 45589999999999999999999999999999999999989999999999999999999999999999998743
No 126
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=1.8e-14 Score=136.84 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=103.9
Q ss_pred CCCCcceEEEEecCHHHHHHHHHhc-cCCeeeccccccCCCC----------------------CCCCcccccccccccH
Q 004041 234 TKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTPSQ----------------------DSDTLFLGNICKTWTK 290 (777)
Q Consensus 234 ~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~~a~----------------------~~~~l~V~nLp~~~te 290 (777)
....+|+++|+|.+.+.|++|++.| |+..+.| .|.+.++. ..++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3567899999999999999999999 8988988 88876653 2478999999999999
Q ss_pred HHHHHHHhhcCCcceeEeEEeecCCCCCCCcceEEEeecChhHHHHHHHHHcCCceeccCCCCccccccCCC
Q 004041 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (777)
Q Consensus 291 ~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~i~v~~a~~~ 362 (777)
++|+++|.+|| .|..|.++.+ ++|||||+|.+.++|.+|+..|++..+ .+++|.|.|+.+.
T Consensus 88 ~~l~~~F~~~G--~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYG--PLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHS--CEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCC
T ss_pred HHHHHHHHhhC--CEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCC
Confidence 99999999999 7999998866 489999999999999999999999877 5899999998653
No 127
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=124.26 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34567999999999999999999999999999999999888999999999999999999999999999999999999875
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.4e-14 Score=129.42 Aligned_cols=78 Identities=19% Similarity=0.418 Sum_probs=64.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce-EEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK-AKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~-~~v~ 450 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|..+. +.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999865 6999999999999999999999999985522 1234
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+....+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 444443
No 129
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=127.47 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 130
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=121.94 Aligned_cols=81 Identities=20% Similarity=0.417 Sum_probs=70.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||. ++..|.| ..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eEEE
Confidence 345899999999999999999999999999999999999999999999999999999999998 4677876 4455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++.+.
T Consensus 87 v~~a~~~ 93 (103)
T 2cqg_A 87 CKLPNSK 93 (103)
T ss_dssp EECCCTT
T ss_pred EEecCCC
Confidence 5555543
No 131
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=126.91 Aligned_cols=83 Identities=30% Similarity=0.609 Sum_probs=77.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 132
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=2e-14 Score=125.13 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=67.5
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||..+++++|+++|.+||.|..|.++.+..+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34899999999999999999999999999999999998999999999999999999999999999999987
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=4.5e-14 Score=129.45 Aligned_cols=81 Identities=11% Similarity=0.283 Sum_probs=72.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|.| ..+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 108 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIK 108 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999 799999987 4455
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 109 V~~a~~ 114 (124)
T 2jwn_A 109 VLPKRT 114 (124)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 555554
No 134
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=122.23 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=69.3
Q ss_pred ccceeecCCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004041 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..+ +|||||+|.+.++|++||..|||..|.| .
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS----K 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 34899999999999999999 99999999999999988765 7899999999999999999999999986 4
Q ss_pred EEEEeecCC
Q 004041 448 KVRARLSRP 456 (777)
Q Consensus 448 ~v~~~~~~~ 456 (777)
.+.+.++++
T Consensus 81 ~l~V~~a~~ 89 (96)
T 2dgx_A 81 KILVSLATG 89 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 455555554
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=123.70 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=77.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCcee-EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccc----c
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT-EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ----C 268 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~-~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~----i 268 (777)
...++|||+|||..+++++|+++|.+||.|. .|+|+.++.++.++|||||+|.+.++|++|++.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 9999999989999999999999999999999999999999999 8
Q ss_pred ccCCCCCC
Q 004041 269 GVTPSQDS 276 (777)
Q Consensus 269 ~V~~a~~~ 276 (777)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88877544
No 136
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=124.66 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=76.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCC---CCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+.. ++.+++||||+|.+.++|++||..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999998876 56899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004041 272 PSQDS 276 (777)
Q Consensus 272 ~a~~~ 276 (777)
++...
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 88654
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=128.81 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=72.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|| .|||..|.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 45589999999999999999999999999999999999999999999999999999999999 999999986 3444
Q ss_pred EeecC
Q 004041 451 ARLSR 455 (777)
Q Consensus 451 ~~~~~ 455 (777)
+.+++
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 44444
No 138
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.8e-14 Score=121.05 Aligned_cols=80 Identities=25% Similarity=0.538 Sum_probs=75.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|+ .||+..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 467999999999999999999999999999999999889999999999999999999999 8999999999999988754
Q ss_pred C
Q 004041 276 S 276 (777)
Q Consensus 276 ~ 276 (777)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=126.69 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...+|||+|||+++|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456799999999999999999999999999999999877 9999999999999999999999 8999999999998754
No 140
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=127.03 Aligned_cols=82 Identities=26% Similarity=0.519 Sum_probs=77.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46779999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 91 ~~ 92 (102)
T 2cqb_A 91 PM 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=126.43 Aligned_cols=84 Identities=32% Similarity=0.497 Sum_probs=76.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC-
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~- 275 (777)
++|||+|||..+++++|+++|.+||.|..|.|+.+ +++||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 689999999999999999999999999999999987732
Q ss_pred ---------------CCCccccccc
Q 004041 276 ---------------SDTLFLGNIC 285 (777)
Q Consensus 276 ---------------~~~l~V~nLp 285 (777)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 3578999886
No 142
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-14 Score=124.16 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=68.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|+..|||..|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 45899999999999999999999999999999999999999999999999999999999999999999875
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=7.4e-14 Score=119.40 Aligned_cols=71 Identities=15% Similarity=0.392 Sum_probs=66.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|++ +++..|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 345899999999999999999999999999999999999999999999999999999999996 68888876
No 144
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=122.36 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=66.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe--eCCCcceEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGEGDNKAK 448 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~--~~g~~~~~~ 448 (777)
.+.++|||+|||..+|+++|+++|.+||.|..|.|++. +|||||+|.+.++|.+|+..||+.. |.| ..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~ 88 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG----HP 88 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cE
Confidence 45689999999999999999999999999999999854 7899999999999999999999986 555 45
Q ss_pred EEEeecCC
Q 004041 449 VRARLSRP 456 (777)
Q Consensus 449 v~~~~~~~ 456 (777)
+.+.+++.
T Consensus 89 i~V~~S~~ 96 (100)
T 3r27_A 89 AFVNYSTS 96 (100)
T ss_dssp EEEEECSC
T ss_pred EEEEeccc
Confidence 66666654
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=121.17 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=76.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999875
Q ss_pred C
Q 004041 274 Q 274 (777)
Q Consensus 274 ~ 274 (777)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=125.82 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=77.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 147
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=3.9e-14 Score=118.79 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=68.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..-|+|+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.+.++|.+|++.||+..+.|+.|.|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45699999999999999999999999999999975 5999999999999999999999999999999999876
No 148
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-14 Score=124.23 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=76.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446779999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
.+.
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 149
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=122.34 Aligned_cols=81 Identities=23% Similarity=0.455 Sum_probs=70.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|..|+ .|.|+.+..+++++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eEEE
Confidence 4558999999999999999999999874 67888888899999999999999999999999999999986 4556
Q ss_pred EeecCCCC
Q 004041 451 ARLSRPLQ 458 (777)
Q Consensus 451 ~~~~~~~~ 458 (777)
+.++++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 66666543
No 150
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=124.22 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=64.1
Q ss_pred ccceeecCCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCC--eeCCCcceEE
Q 004041 372 QVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA--ELGEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V~nLp~-~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~--~~~g~~~~~~ 448 (777)
+.++|||+|||+ .+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|.+||..||+. .|.| ..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 83 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG----KP 83 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC----cE
Confidence 568999999999 9999999999999999999999875 579999999999999999999865 4776 34
Q ss_pred EEEeecCC
Q 004041 449 VRARLSRP 456 (777)
Q Consensus 449 v~~~~~~~ 456 (777)
|.+.+++.
T Consensus 84 l~V~~a~~ 91 (102)
T 1x4d_A 84 VRVHLSQK 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 44455443
No 151
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=126.55 Aligned_cols=83 Identities=28% Similarity=0.453 Sum_probs=77.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc------CCeeeccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK------NPVINGKQ 267 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~------~~~~~gr~ 267 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346679999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cccCCCCCC
Q 004041 268 CGVTPSQDS 276 (777)
Q Consensus 268 i~V~~a~~~ 276 (777)
|.|.++...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999988554
No 152
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=5.5e-14 Score=122.31 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=75.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+.. +.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3457899999999999999999999999999999999875 889999999999999999999999999999999999887
Q ss_pred C
Q 004041 274 Q 274 (777)
Q Consensus 274 ~ 274 (777)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=125.66 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=78.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHhc-cCCeeeccccccC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d-~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~ 271 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34677999999999999999999999999999999998 778999999999999999999999999 9999999999999
Q ss_pred CCCCCC
Q 004041 272 PSQDSD 277 (777)
Q Consensus 272 ~a~~~~ 277 (777)
++....
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 886554
No 154
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=4.6e-14 Score=130.25 Aligned_cols=83 Identities=28% Similarity=0.457 Sum_probs=78.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 155
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=125.84 Aligned_cols=84 Identities=26% Similarity=0.542 Sum_probs=78.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8654
No 156
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=4.1e-14 Score=125.85 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee---ecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~---~gr~i~V 270 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4567899999999999999999999999999999999988999999999999999999999999999887 8899999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 888554
No 157
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=3e-14 Score=118.14 Aligned_cols=70 Identities=23% Similarity=0.476 Sum_probs=66.2
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
+|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ ||+..|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 99999987543
No 158
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.49 E-value=6e-14 Score=127.01 Aligned_cols=82 Identities=28% Similarity=0.564 Sum_probs=76.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
....+|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 159
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=126.84 Aligned_cols=84 Identities=25% Similarity=0.379 Sum_probs=78.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCcee--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (777)
...++|||+|||+.+++++|+++|.+||.|. .|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred cccccCCCCCCC
Q 004041 266 KQCGVTPSQDSD 277 (777)
Q Consensus 266 r~i~V~~a~~~~ 277 (777)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999886543
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=120.56 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=63.9
Q ss_pred ceeecCCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 374 KTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 374 ~~l~V~nLp~~~------t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
++|||+|||..+ ++++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++|+..|||..|.|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 689999999999 789999999999999999988 45889999999999999999999999999999875
No 161
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=123.59 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (777)
...++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred cccccCCC
Q 004041 266 KQCGVTPS 273 (777)
Q Consensus 266 r~i~V~~a 273 (777)
+.|.|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999765
No 162
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.5e-14 Score=123.34 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc-cCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCe-eeccccccC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT 271 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~-~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~-~~gr~i~V~ 271 (777)
...++|||+|||+.+++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34678999999999999999999999 9999999999998 89999999999999999999999999999 999999999
Q ss_pred CCCCC
Q 004041 272 PSQDS 276 (777)
Q Consensus 272 ~a~~~ 276 (777)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88544
No 163
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=121.69 Aligned_cols=79 Identities=24% Similarity=0.403 Sum_probs=68.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 84 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIR 84 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEE
Confidence 345899999999999999999999999977 55665 678999999999999999999999999999986 4556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6666553
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-15 Score=136.36 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~--------v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+++|.+||.|.. |.|+.++.+++++|||||+|.+.++|++||..|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34589999999999999999999999999998 9999998899999999999999999999999999999986
Q ss_pred CcceEEEEEeecCC
Q 004041 443 GDNKAKVRARLSRP 456 (777)
Q Consensus 443 ~~~~~~v~~~~~~~ 456 (777)
..+.+.++++
T Consensus 85 ----~~l~V~~a~~ 94 (116)
T 2lcw_A 85 ----NPIKVSFATR 94 (116)
Confidence 3444455544
No 165
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=8.3e-14 Score=124.60 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=69.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..+ +..|.| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999976 588876 3444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++.+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 444443
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=123.57 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=75.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+|| |..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3467899999999999999999999997 999999999999999999999999999999999 89999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 167
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=125.52 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=71.4
Q ss_pred ccceeecCCCCCCCCHHHHH---HHhhccCCeEEEEEeecCCCC---CcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 372 QVKTVFVDGLPASWDEDRVR---ELLKNYGEITKIELARNMPSA---KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~---~~F~~~G~v~~v~i~~~~~~g---~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ +++|||||+|.+.++|++||+.|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 34899999999999999999 999999999999999887654 556999999999999999999999999986
Q ss_pred eEEEEEeecCCC
Q 004041 446 KAKVRARLSRPL 457 (777)
Q Consensus 446 ~~~v~~~~~~~~ 457 (777)
..+.+.++.++
T Consensus 91 -r~l~V~~a~~k 101 (111)
T 2cpi_A 91 -RTLKASLGTTK 101 (111)
T ss_dssp -EEEEEESCCCC
T ss_pred -EEEEEEecccc
Confidence 45555665543
No 168
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=3e-14 Score=118.20 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
+|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998899999999999999999999998 9999999999998764
No 169
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.2e-14 Score=122.14 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=70.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeecccccc
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGV 270 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V 270 (777)
+....+|||+|||+.+|+++|+++|.+||.|+.|.|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445778999999999999999999999999999999864 7999999999999999999886 47899999999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 998654
No 170
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=5.2e-14 Score=127.85 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999765
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=124.37 Aligned_cols=84 Identities=18% Similarity=0.411 Sum_probs=72.8
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc----ceE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD----NKA 447 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~----~~~ 447 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.+.. ...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45899999999999999999999999999999999998 8999999999999999999999999999996533 123
Q ss_pred EEEEeecCC
Q 004041 448 KVRARLSRP 456 (777)
Q Consensus 448 ~v~~~~~~~ 456 (777)
.+.+.++.|
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 344555544
No 172
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-14 Score=124.04 Aligned_cols=81 Identities=32% Similarity=0.546 Sum_probs=75.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35677999999999999999999999999999999987 7899999999999999999999999999999999999987
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 544
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=119.43 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=69.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|++||. ||+..|.+ ..|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~v 81 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIEV 81 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEEE
Confidence 44899999999999999999999999 9999999999 789999999999999999999999 99999986 33444
Q ss_pred eecCC
Q 004041 452 RLSRP 456 (777)
Q Consensus 452 ~~~~~ 456 (777)
.++.+
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 44443
No 174
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=134.18 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=75.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccC--ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
..++|||+|||+.+++++|+++|.+|| .|..|+|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004041 273 SQ 274 (777)
Q Consensus 273 a~ 274 (777)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 175
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.3e-13 Score=119.55 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=64.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh--CCCeeCCCcceEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI--NNAELGEGDNKAK 448 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l--~g~~~~g~~~~~~ 448 (777)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|.+|+..| ++..|.| ..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 82 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN----QP 82 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC----cE
Confidence 45689999999999999999999999999999998865 789999999999999999977 4667876 44
Q ss_pred EEEeecCC
Q 004041 449 VRARLSRP 456 (777)
Q Consensus 449 v~~~~~~~ 456 (777)
+.+.++++
T Consensus 83 l~V~~a~~ 90 (101)
T 2cq1_A 83 IYIQYSNH 90 (101)
T ss_dssp CEEEECSC
T ss_pred EEEEEcCc
Confidence 55555554
No 176
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.3e-14 Score=126.48 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=76.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|+|+.++.++++++||||+|.+.++|++||..|++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4567899999999999999999999999999999999988999999999999999999999999998 899999999887
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 177
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=6e-14 Score=119.98 Aligned_cols=80 Identities=26% Similarity=0.546 Sum_probs=73.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999997 578889999998875
Q ss_pred C
Q 004041 273 S 273 (777)
Q Consensus 273 a 273 (777)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-14 Score=123.78 Aligned_cols=80 Identities=23% Similarity=0.499 Sum_probs=75.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..++|||+|||+.+++++|+++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999 999999999887 899999999999999999999 89999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 179
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=121.20 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=59.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe--eCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~--~~g 442 (777)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|.+|+..||+.. |.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45589999999999999999999999999999999864 7899999999999999999987654 665
No 180
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=7.2e-14 Score=125.21 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=77.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 181
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=7.3e-14 Score=124.47 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999987 8999999999999999999999999999999999999765
No 182
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=118.28 Aligned_cols=73 Identities=22% Similarity=0.503 Sum_probs=64.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..||+..|.+. .+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v 74 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----NINV 74 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc----EEEE
Confidence 45899999999999999999999999999999997 56999999999999999999999999863 3444
Q ss_pred eecCC
Q 004041 452 RLSRP 456 (777)
Q Consensus 452 ~~~~~ 456 (777)
.++++
T Consensus 75 ~~a~~ 79 (90)
T 2dnq_A 75 EASKN 79 (90)
T ss_dssp ECSSC
T ss_pred EECCC
Confidence 45444
No 183
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=7.3e-14 Score=124.00 Aligned_cols=82 Identities=23% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec---ccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING---KQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g---r~i~V 270 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346789999999999999999999999999999999987 78999999999999999999999999999988 99999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 887543
No 184
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=5.9e-14 Score=129.04 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred C
Q 004041 274 Q 274 (777)
Q Consensus 274 ~ 274 (777)
.
T Consensus 100 ~ 100 (126)
T 3ex7_B 100 F 100 (126)
T ss_dssp E
T ss_pred c
Confidence 4
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=125.45 Aligned_cols=72 Identities=25% Similarity=0.521 Sum_probs=65.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecC-CCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~-~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||..+++++|+++|.+|| |..|.|+.+. .+++++|||||+|.+.++|.+|| .|||..|.|..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 4558999999999999999999999999 9999999998 68999999999999999999999 89999998743
No 186
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=4.2e-14 Score=123.11 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=75.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||+.+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35789999999999999999999999999999999988899999999999999999999999999999999999998764
No 187
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=117.99 Aligned_cols=75 Identities=16% Similarity=0.442 Sum_probs=66.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|++|+..|||..|.+ ..+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 75 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQG----KRMH 75 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 34589999999999999999999999999999999844 99999999999999999999999986 5556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 6666553
No 188
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7e-14 Score=124.16 Aligned_cols=82 Identities=27% Similarity=0.513 Sum_probs=77.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||.. ++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4567899999999999999999999999999999999988999999999999999999999998 999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 93 ~~~ 95 (105)
T 2dh8_A 93 TPR 95 (105)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 189
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=1.4e-13 Score=119.06 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=75.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999973 7889999999999999999999999999999999999987
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 190
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=120.71 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=75.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCC-CcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~-~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999877665 8999999999999999999999999999999999876
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 191
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=130.86 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=68.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEE--EEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCC----eeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA----ELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~--v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~----~~~g~~ 444 (777)
...++|||+|||+.+|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+. +|.+||..|||. .|.|..
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45589999999999999999999999999976 99999999999999999999999 999999999999 898744
No 192
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.2e-14 Score=117.83 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=66.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+..|+ ..|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 479999999999999999999999999999999999899999999999999999999999999 88887443
No 193
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=123.47 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=76.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45779999999999999999999999999999899888899999999999999999999999999999999999998775
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.46 E-value=1.8e-14 Score=134.24 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||+.+|+++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|.+..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 3458999999999999999999999999 67999999975 999999999999999999999 79999998743
No 195
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=2.6e-13 Score=121.55 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=72.5
Q ss_pred CCCccccccCCCCCCCcccccccceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHH
Q 004041 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (777)
Q Consensus 351 ~~~i~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~ 429 (777)
+.++.+..+....... .....++|||+|||.. +++++|+++|.+||.|..|.| ++|||||+|.+.++|+
T Consensus 7 g~~~~~~~s~~~~~~~--~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 7 GMSLKLQASNVTNKND--PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp SCCCCCCCCCSCCSCC--CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CcccccccCCCCCCCC--CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4556665554432222 2234589999999999 999999999999999999998 3779999999999999
Q ss_pred HHHHHhCCCeeCCCcceEEEEEeecCC
Q 004041 430 TCAKSINNAELGEGDNKAKVRARLSRP 456 (777)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (777)
+||..||+..|.+ ..+.+.++++
T Consensus 77 ~A~~~l~g~~~~g----~~l~V~~a~~ 99 (110)
T 1wf1_A 77 AAVLGENGRVLAG----QTLDINMAGE 99 (110)
T ss_dssp HHHHHHTTCEETT----EECCEEESCC
T ss_pred HHHHHcCCCEECC----eEEEEEECCC
Confidence 9999999999987 4445555543
No 196
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.1e-13 Score=116.03 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=60.5
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.-|||+||++.+|+++|+++|.+||+|..|.|.. ++|||||+|.+.++|.+|++.||+..|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 36799999999999999999999999999999975 48999999999999999999999999987
No 197
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-14 Score=129.48 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCe-EEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v-~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||+.+++++|+++|.+||.| ..|.|+.+. +++++|||||+|.+.++|++||.. |+..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 345899999999999999999999999999 899999998 899999999999999999999986 9999986
No 198
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=1e-13 Score=132.52 Aligned_cols=83 Identities=16% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 199
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=3.1e-13 Score=126.56 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=70.0
Q ss_pred cccccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 369 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999986
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=124.26 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=76.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 45799999999999999999999999999999999988999999999999999999999999999999999999988754
Q ss_pred C
Q 004041 276 S 276 (777)
Q Consensus 276 ~ 276 (777)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 201
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=121.09 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=68.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
..++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. |+..|.+. .+.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr--~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR--YIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS--CCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc--EEEEE
Confidence 4589999999999999999999999999987 888888 7899999999999999999999997 99999864 34444
Q ss_pred Ee
Q 004041 451 AR 452 (777)
Q Consensus 451 ~~ 452 (777)
..
T Consensus 90 ~~ 91 (104)
T 1wg5_A 90 KS 91 (104)
T ss_dssp EE
T ss_pred EC
Confidence 44
No 202
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=126.43 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=71.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++|+..|||..|.| ..+.|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEE
Confidence 456899999999999999999999999999999999998 89999999999999999999999999999986 334444
Q ss_pred Ee
Q 004041 451 AR 452 (777)
Q Consensus 451 ~~ 452 (777)
.+
T Consensus 110 ~a 111 (124)
T 2kt5_A 110 LV 111 (124)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 203
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=9.4e-14 Score=117.07 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=68.0
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc-ccc
Q 004041 197 FEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCG 269 (777)
Q Consensus 197 ~~lfV~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr-~i~ 269 (777)
++|||+|||..+ ++++|+++|.+||.|..|.|+ ..+++++|||||+|.+.++|.+|+..||+..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 579999999999 789999999999999999987 46789999999999999999999999999999999 888
Q ss_pred cC
Q 004041 270 VT 271 (777)
Q Consensus 270 V~ 271 (777)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 204
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=120.99 Aligned_cols=81 Identities=25% Similarity=0.479 Sum_probs=74.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4567899999999999999999999999999999998754 38999999999999999999999999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 544
No 205
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=123.18 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=64.5
Q ss_pred ccceeecCCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~------t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||..+ ++++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++||..|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34899999999999 789999999999999999998 4688999999999999999999999999999987
No 206
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.5e-14 Score=127.00 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=61.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|++||..|||..|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3558999999999999999999999999994332222222788999999999999999999999999999863
No 207
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=119.80 Aligned_cols=78 Identities=18% Similarity=0.413 Sum_probs=65.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++|++.||+..|.+.+..+ .
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l--~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL--R 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC--E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE--E
Confidence 34589999999999999999999999999999999864 679999999999999999999999998322334 4
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444444
No 208
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=8.8e-14 Score=124.32 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=65.1
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
.++|||+|||+.+++++|+++|.+|| .|..|.|... .++|||||+|.+.++|++||+.|||..|.| ..|.+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V 99 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRG----SVITV 99 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 38999999999999999999999999 8999998643 478999999999999999999999999987 34444
Q ss_pred eecC
Q 004041 452 RLSR 455 (777)
Q Consensus 452 ~~~~ 455 (777)
.+++
T Consensus 100 ~~a~ 103 (111)
T 2jvr_A 100 ERDD 103 (111)
T ss_dssp EESC
T ss_pred EECC
Confidence 4443
No 209
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.5e-13 Score=117.55 Aligned_cols=78 Identities=26% Similarity=0.518 Sum_probs=67.8
Q ss_pred cccccceeecCCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004041 369 IMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 369 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~--G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
...+.++|||+|||..+++++|+++|.+| |.|..|.+. +|||||+|.+.++|++||..|||..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDG---- 78 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETT----
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 34556899999999999999999999999 999999875 5599999999999999999999999986
Q ss_pred EEEEEeecCCCC
Q 004041 447 AKVRARLSRPLQ 458 (777)
Q Consensus 447 ~~v~~~~~~~~~ 458 (777)
..+.+.++++..
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 556666766543
No 210
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-14 Score=118.12 Aligned_cols=76 Identities=28% Similarity=0.538 Sum_probs=72.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999998889999999999999999999999999 9999999998764
No 211
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=4e-14 Score=121.89 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=68.3
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+ |.+|+..|||..|.|..+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999754333
No 212
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=123.35 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=69.8
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 455899999999999999999999999999999999885 4589999999999999999999999999987 3444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++++
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444443
No 213
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=120.52 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45689999999999999999 99999999999999988665 889999999999999999999999999999999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 988654
No 214
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=117.20 Aligned_cols=75 Identities=17% Similarity=0.390 Sum_probs=65.6
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+++ ||||+|.+.++|++||..|||..|.+ ..+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 74 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKG----KRIN 74 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 34589999999999999999999999999999999844 99999999999999999999999986 4455
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 5555543
No 215
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=124.85 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=77.3
Q ss_pred CcceEEEeCCCCCCCHHHHH---HHhhccCceeEEEEeeCCCCC---CCcceEEEEecCHHHHHHHHHhccCCeeecccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQTK---KNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~~g---~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (777)
...+|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45679999999999999999 999999999999999887644 566999999999999999999999999999999
Q ss_pred ccCCCCCCCCcc
Q 004041 269 GVTPSQDSDTLF 280 (777)
Q Consensus 269 ~V~~a~~~~~l~ 280 (777)
.|.++....+.+
T Consensus 94 ~V~~a~~k~~~~ 105 (111)
T 2cpi_A 94 KASLGTTKYCSY 105 (111)
T ss_dssp EEESCCCCSCSS
T ss_pred EEEecccccccc
Confidence 999987765433
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=122.42 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=66.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCC-eEEEEEe-ecCCCCCcccEEEEEeccHHHHHHHHHHhC--CCeeCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELA-RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~-v~~v~i~-~~~~~g~~kg~afV~F~~~~~A~~A~~~l~--g~~~~g~ 443 (777)
..++|||+|||..+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+|+..|| +..|.|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 3489999999999999999999999998 9999998 788889999999999999999999999996 5788863
No 217
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=8.6e-14 Score=122.45 Aligned_cols=81 Identities=21% Similarity=0.490 Sum_probs=73.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCC-CCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
...++|||+|||+.+++++|+++|.+|| |..|.|+.+. .+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4567899999999999999999999999 9999999987 58999999999999999999999 8999999999999988
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7654
No 218
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=123.59 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=74.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999999986 58899999999999999999999999999999999998774
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 219
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=130.00 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=75.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeE--EEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC----eeecccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQC 268 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~--v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~----~~~gr~i 268 (777)
...+|||+|||+.+|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+. +|.+||..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3567999999999999999999999999976 99999999999999999999999 999999999999 9999999
Q ss_pred ccCCCCCC
Q 004041 269 GVTPSQDS 276 (777)
Q Consensus 269 ~V~~a~~~ 276 (777)
.|.++...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99988654
No 220
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=123.60 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=60.3
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC--CeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g--~~~~g 442 (777)
.+.++|||+|||+.+++++|+++|.+||.|+.|.|+++ +|||||+|.+.++|.+||..|++ ..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34589999999999999999999999999999999976 78999999999999999999884 57776
No 221
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.2e-14 Score=126.50 Aligned_cols=77 Identities=27% Similarity=0.454 Sum_probs=73.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 467999999999999999999999999999999999999999999999999999999999 89999999999999875
No 222
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=5.1e-14 Score=121.25 Aligned_cols=79 Identities=29% Similarity=0.532 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCC
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (777)
++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.+ |.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999889999999999999999 99999999999999999999987554
No 223
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=121.42 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34678999999999999999999999999999999654 557999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=122.13 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=63.8
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...+|||+|||+.+++++|+++|.+| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 34799999999999999999999999 899999999875 999999999999999999999 699999986
No 225
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=120.54 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=67.5
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.| ..+.+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 93 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKC 93 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEE
Confidence 3489999999999999999999999999999999876 7899999999999999999999999986 45555
Q ss_pred eecCCC
Q 004041 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.++++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4g_A 94 YWGKES 99 (109)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 666543
No 226
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=120.81 Aligned_cols=81 Identities=22% Similarity=0.399 Sum_probs=74.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ +++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34678999999999999999999999999999999987543 6899999999999999999999999999999999987
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 553
No 227
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8e-14 Score=123.05 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
....+|||+|||+.+|+++|+++|.+||. +.|+|+.++ +++++|||||+|.+.++|++||+ +|+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45678999999999999999999999994 599999987 89999999999999999999995 7999999999998765
Q ss_pred C
Q 004041 274 Q 274 (777)
Q Consensus 274 ~ 274 (777)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=129.11 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=77.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|..||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999998875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 121 ~~ 122 (139)
T 1u6f_A 121 SG 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 229
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=1.6e-13 Score=122.71 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=74.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3456789999999999999999999999999999999998899999999999999999999999864 899999999987
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7543
No 230
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=124.01 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=75.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 46799999999999999999999999999999999989999999999999999999999997 99999999999998865
Q ss_pred C
Q 004041 276 S 276 (777)
Q Consensus 276 ~ 276 (777)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 231
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=118.81 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=61.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|++.|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45589999999999999999999999999999999865 7899999999999999999999999987
No 232
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.7e-13 Score=118.29 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=63.4
Q ss_pred cccceeecCCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004041 371 AQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.+.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|.|..+.+.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3458999999998 99999999999999999999985 67999999999999999999999999975544444
Q ss_pred E
Q 004041 450 R 450 (777)
Q Consensus 450 ~ 450 (777)
.
T Consensus 80 a 80 (96)
T 2kvi_A 80 S 80 (96)
T ss_dssp E
T ss_pred c
Confidence 3
No 233
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=119.23 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=61.7
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+..|||..|.|..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 47999999999999999999999999999999877 5889999999999999999999999998733
No 234
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=1.3e-13 Score=126.47 Aligned_cols=81 Identities=25% Similarity=0.510 Sum_probs=76.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4578999999999999999999999999999999999889999999999999999999999 799999999999999875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 235
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=121.49 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=73.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeE-EEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE-VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~-v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....+|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34678999999999999999999999999987 888887 7899999999999999999999997 99999999999977
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 6443
No 236
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=2.1e-13 Score=124.98 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456789999999999999999999999999999999987 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 004041 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 237
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.6e-14 Score=127.61 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=67.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
...++|||+|||+.+++++|+++|.+||.|..|.++.+..+++++|||||+|.+.++|++||. ||+..|.+..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 345899999999999999999999999999987777777799999999999999999999999 99999987543
No 238
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=7.9e-14 Score=115.58 Aligned_cols=72 Identities=26% Similarity=0.518 Sum_probs=66.3
Q ss_pred eeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004041 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 375 ~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+. +++..|.|..+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999998 5888898754433
No 239
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=117.89 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=74.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
....+|||+|||+.+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456789999999999999999999999 9999999998 789999999999999999999999 9999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 240
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=125.15 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCce-eEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEV-TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v-~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
...++|||+|||+.+|+++|+++|.+||.| ..|+|+.+. +++++|||||+|.+.++|++||+. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 346789999999999999999999999999 899999987 899999999999999999999997 99999999999987
Q ss_pred C
Q 004041 273 S 273 (777)
Q Consensus 273 a 273 (777)
+
T Consensus 91 a 91 (114)
T 2cpy_A 91 V 91 (114)
T ss_dssp E
T ss_pred C
Confidence 6
No 241
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2e-13 Score=122.02 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=76.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCc-eeEEEEe-eCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeeccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLM-MNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCG 269 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~-v~~v~i~-~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~ 269 (777)
...++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred cCCCCCCC
Q 004041 270 VTPSQDSD 277 (777)
Q Consensus 270 V~~a~~~~ 277 (777)
|.++....
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99886543
No 242
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=119.89 Aligned_cols=84 Identities=35% Similarity=0.512 Sum_probs=77.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45678999999999999999999999999999999843 789999999999999999999999999999999999
Q ss_pred CCCCCccccc
Q 004041 274 QDSDTLFLGN 283 (777)
Q Consensus 274 ~~~~~l~V~n 283 (777)
.....+.+++
T Consensus 87 ~~~~~~~~g~ 96 (99)
T 2cpj_A 87 CHSASLTSGP 96 (99)
T ss_dssp SCCSCCCCCC
T ss_pred CCCCCCCCCC
Confidence 8888877765
No 243
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2e-13 Score=119.03 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=67.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 355899999999999999999999999988666 3468899999999999999999999999999986 4566
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 6666554
No 244
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-13 Score=125.47 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCc---eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...++|||+|||+.+|+++|+++|..||. |..|+|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35678999999999999999999999999 89999999876 9999999999999999999999 9999999999998
Q ss_pred CCC
Q 004041 271 TPS 273 (777)
Q Consensus 271 ~~a 273 (777)
.++
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 245
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=121.80 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=71.4
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC--CeeeccccccC
Q 004041 195 KEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVT 271 (777)
Q Consensus 195 ~~~~lfV~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V~ 271 (777)
...+|||+|||+ .+|+++|+++|.+||.|+.|.|+++ ++||||+|.+.++|..|++.||+ ..|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467899999999 9999999999999999999999864 58999999999999999999885 46999999999
Q ss_pred CCCCCCCcc
Q 004041 272 PSQDSDTLF 280 (777)
Q Consensus 272 ~a~~~~~l~ 280 (777)
++.....|.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x4d_A 88 LSQKYKRIK 96 (102)
T ss_dssp EECCCTTSS
T ss_pred ECCCCCCCC
Confidence 987665544
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.6e-13 Score=124.60 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=65.3
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||+.+|+++|+++|.+||. |..|.|+.+.. ++++|||||+|.+.++|++||. ||+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 4488999999999999999999999999 89999999976 9999999999999999999999 99999986
No 247
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.6e-13 Score=119.08 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=74.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 3456799999999999999999999999999999999988999999999999999999999994 67899999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 248
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=121.63 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=74.0
Q ss_pred CcceEEEeCCCCCC------CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc-c
Q 004041 195 KEFEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-Q 267 (777)
Q Consensus 195 ~~~~lfV~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr-~ 267 (777)
..++|||+|||+.+ |+++|+++|.+||.|..|.|+ ..+++++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35689999999999 789999999999999999988 46789999999999999999999999999999998 9
Q ss_pred cccCCCCCCC
Q 004041 268 CGVTPSQDSD 277 (777)
Q Consensus 268 i~V~~a~~~~ 277 (777)
|.|.++.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999886543
No 249
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=3.1e-14 Score=125.46 Aligned_cols=79 Identities=8% Similarity=0.199 Sum_probs=68.0
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|.. .++.+..+++++|||||+|.+.++|++||+ |||..|.+. .+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----EIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB----CCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc----EEEE
Confidence 4589999999999999999999999999887 666776788999999999999999999998 999999863 3444
Q ss_pred eecCC
Q 004041 452 RLSRP 456 (777)
Q Consensus 452 ~~~~~ 456 (777)
.++++
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 44444
No 250
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.42 E-value=1.2e-13 Score=128.49 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=77.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35679999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 251
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.8e-13 Score=120.04 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=70.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec-----ccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-----KQC 268 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-----r~i 268 (777)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35678999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred ccCCCCCC
Q 004041 269 GVTPSQDS 276 (777)
Q Consensus 269 ~V~~a~~~ 276 (777)
.|.++...
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99887654
No 252
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=127.07 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=75.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
....+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999998764
No 253
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=1e-13 Score=114.89 Aligned_cols=75 Identities=29% Similarity=0.609 Sum_probs=70.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999988999999999999999999999995 888999999988653
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=121.56 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=69.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..+|||+|||+.+|+++|+++|.+| .|..|.|+.+.. ++++|||||+|.+.++|++|| .||+..|.|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999 899999999865 999999999999999999999 58999999999998765
No 255
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=1.3e-13 Score=128.05 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
..++|||+|||+.+|+++|+++|.+||. |..|.|+.+.. |+++|||||+|.+.++|++||+ ||+..|.+ ..+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--r~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH--RYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS--SEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC--EEEE
Confidence 4489999999999999999999999999 88999999987 9999999999999999999999 99999986 3344
Q ss_pred EEE
Q 004041 449 VRA 451 (777)
Q Consensus 449 v~~ 451 (777)
|..
T Consensus 119 V~~ 121 (136)
T 2hgl_A 119 VFK 121 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 256
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.2e-13 Score=116.97 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=63.3
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC-CeeCCCcceEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKV 449 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~-v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v 449 (777)
..++|||+|||..+++++|+++|.+||. |..+.|. ++|||||+|.+.++|++|+..||| ..|.+ ..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEE
Confidence 4589999999999999999999999999 5555553 378999999999999999999999 99986 445
Q ss_pred EEeecCCC
Q 004041 450 RARLSRPL 457 (777)
Q Consensus 450 ~~~~~~~~ 457 (777)
.+.++++.
T Consensus 76 ~v~~a~~~ 83 (93)
T 2cqh_A 76 EVDYSVSK 83 (93)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 55565543
No 257
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1.3e-13 Score=127.96 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCc---eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...++|||+|||+.+|+++|+++|.+||. |..|+|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34678999999999999999999999999 89999999877 9999999999999999999999 9999999999998
Q ss_pred CCC
Q 004041 271 TPS 273 (777)
Q Consensus 271 ~~a 273 (777)
.++
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 258
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=123.34 Aligned_cols=70 Identities=13% Similarity=0.283 Sum_probs=63.0
Q ss_pred ccceeecCCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+.++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|.+||..|||..|.|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 45899999999999999876 6999999999988854 5788999999999999999999999999998743
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=113.21 Aligned_cols=66 Identities=26% Similarity=0.459 Sum_probs=61.7
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHh-CCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l-~g~~~~g 442 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|+..| |+..|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 34589999999999999999999999999999999874 789999999999999999999 9999987
No 260
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.3e-13 Score=119.61 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=64.1
Q ss_pred ccceeec--CCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCee-CCCcceEE
Q 004041 372 QVKTVFV--DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V--~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~-~g~~~~~~ 448 (777)
++++||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||+.| ..-.....
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4588999 779999999999999999999999988643 78999999999999999999999988 21112344
Q ss_pred EEEeecC
Q 004041 449 VRARLSR 455 (777)
Q Consensus 449 v~~~~~~ 455 (777)
+.+.+++
T Consensus 98 l~v~~a~ 104 (114)
T 2cq2_A 98 LYLNFVE 104 (114)
T ss_dssp CEEEEES
T ss_pred EEEEecc
Confidence 5555544
No 261
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.3e-14 Score=128.11 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+|+++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345789999999999999999999999999987777777789999999999999999999999 9999999999999876
No 262
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=122.20 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCc---eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...++|||+|||+.+|+++|+++|..||. |..|.|+.+.. ++++|||||+|.+.++|++||. ||+..|.|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45678999999999999999999999998 89999999877 9999999999999999999999 9999999999998
Q ss_pred CCC
Q 004041 271 TPS 273 (777)
Q Consensus 271 ~~a 273 (777)
.++
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 263
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=5.9e-13 Score=118.76 Aligned_cols=75 Identities=16% Similarity=0.405 Sum_probs=66.6
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 96 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLE 96 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 455899999999999999999999999999999998 6799999999999999999999999986 4556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 6666543
No 264
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.5e-13 Score=117.97 Aligned_cols=81 Identities=27% Similarity=0.542 Sum_probs=74.3
Q ss_pred HhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 191 ~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
......++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004041 271 TPSQDSD 277 (777)
Q Consensus 271 ~~a~~~~ 277 (777)
.++....
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9986654
No 265
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=8.6e-13 Score=115.27 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=64.5
Q ss_pred cccceeecCCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004041 371 AQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
...++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|.| ..+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 87 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKL 87 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT----EEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 3458999999998 99999999999999999999984 6799999999999999999999999986 444
Q ss_pred EEeecCC
Q 004041 450 RARLSRP 456 (777)
Q Consensus 450 ~~~~~~~ 456 (777)
.+.++++
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 4455543
No 266
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=9.2e-13 Score=120.25 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=69.9
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccE-EEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
+...|||+||++.+|+++|+++|++||.|..|.|+.. .+|| |||+|.+.++|++|++.|||..|.++ .+.++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~Lr 99 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLR 99 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEE
Confidence 3467889999999999999999999999999998764 2678 99999999999999999999999863 46778
Q ss_pred EeecCCCC
Q 004041 451 ARLSRPLQ 458 (777)
Q Consensus 451 ~~~~~~~~ 458 (777)
+.++++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 88887643
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.2e-13 Score=118.17 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=65.5
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
.++|||+|||..+++++|+++|.+||.|..|.|++ ++|||||+|.+.++|.+|+..|||..|.| ..+.+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 96 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTG 96 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 48999999999999999999999999999999983 47899999999999999999999999987 445555
Q ss_pred ecCC
Q 004041 453 LSRP 456 (777)
Q Consensus 453 ~~~~ 456 (777)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 5543
No 268
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=116.90 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=61.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..++|||+|||..+++++|+++|.+||.|. +.|+.+ .++|||||+|.+.++|++||..|||..|.|..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 458999999999999999999999999997 676654 56889999999999999999999999998743
No 269
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.9e-13 Score=119.95 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=63.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+. ++|||||+|.+.++|++||..|||..|.+..+.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 358999999999999999999999999999999875 47899999999999999999999999987544333
No 270
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.2e-13 Score=120.38 Aligned_cols=76 Identities=13% Similarity=0.344 Sum_probs=69.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345789999999999999999999999999999999987 8999999999999999999999999999996555443
No 271
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=121.94 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=66.2
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..++|||+|||+.+|+++|+++|..||. |..|.|+.+.. |+++|||||+|.+.++|++||. ||+..|.+..
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 4589999999999999999999999998 89999999987 9999999999999999999999 9999998744
No 272
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=9e-13 Score=116.03 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=71.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||..+++++|+++|.+||.|..|+|+ .++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456889999999999999999999999999999997 3589999999999999999999999999999999998
Q ss_pred CCC
Q 004041 273 SQD 275 (777)
Q Consensus 273 a~~ 275 (777)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 273
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.7e-13 Score=120.38 Aligned_cols=82 Identities=26% Similarity=0.496 Sum_probs=74.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|||..+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|++|+..||+..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999874 34899999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7543
No 274
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.39 E-value=3.2e-13 Score=120.67 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccC-ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (777)
....++|||+|||+.+++++|+++|.+|| .|..|.|.. ..++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578899999999999999999999999 899998863 2478999999999999999999999999999999998
Q ss_pred CCCC
Q 004041 272 PSQD 275 (777)
Q Consensus 272 ~a~~ 275 (777)
++..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7753
No 275
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=113.38 Aligned_cols=75 Identities=23% Similarity=0.500 Sum_probs=69.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 356789999999999999999999999999999997 579999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 276
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=5e-13 Score=130.31 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=70.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
...++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||..|||..|.+..+.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999998744333
No 277
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.39 E-value=7.7e-13 Score=119.46 Aligned_cols=70 Identities=11% Similarity=0.329 Sum_probs=64.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4589999999999999999999999999999999875 456899999999999999999999999998743
No 278
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.39 E-value=3.6e-13 Score=117.56 Aligned_cols=79 Identities=19% Similarity=0.405 Sum_probs=68.8
Q ss_pred cccceeecCCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004041 371 AQVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
.+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---- 78 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----
Confidence 345899999999999999999 9999999999999874 46788999999999999999999999999986
Q ss_pred EEEEEeecCC
Q 004041 447 AKVRARLSRP 456 (777)
Q Consensus 447 ~~v~~~~~~~ 456 (777)
..+.+.++++
T Consensus 79 ~~l~v~~a~~ 88 (97)
T 1nu4_A 79 KPMRIQYAKT 88 (97)
T ss_dssp EECEEEECSS
T ss_pred cEEEEEEccC
Confidence 4455555554
No 279
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4e-13 Score=119.72 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=60.0
Q ss_pred cccceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC--CeeCCCc
Q 004041 371 AQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g--~~~~g~~ 444 (777)
.+.++|||+|||+. +++++|+++|.+||.|..|.|++. +|||||+|.+.++|++||..||+ ..|.|..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 45689999999998 999999999999999999999753 78999999999999999998865 4577643
No 280
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=1.6e-12 Score=118.12 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=67.1
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccE-EEEEeccHHHHHHHHHHhCCCeeCCCcceEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (777)
.....|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|.+|++.|||..|.++. +.+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l 94 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTL 94 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEE
Confidence 34466789999999999999999999999999999753 276 999999999999999999999998643 456
Q ss_pred EEeecCCC
Q 004041 450 RARLSRPL 457 (777)
Q Consensus 450 ~~~~~~~~ 457 (777)
++.++++.
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 66676654
No 281
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=116.23 Aligned_cols=77 Identities=27% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCe--eeccccccC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV--INGKQCGVT 271 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~--~~gr~i~V~ 271 (777)
....+|||+|||..+|+++|+++|.+||.|+.|.|++ .+|||||+|.+.++|.+|++.|++.. |.|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3467899999999999999999999999999999984 37899999999999999999998764 789999999
Q ss_pred CCCCC
Q 004041 272 PSQDS 276 (777)
Q Consensus 272 ~a~~~ 276 (777)
++...
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 87643
No 282
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=113.01 Aligned_cols=65 Identities=20% Similarity=0.406 Sum_probs=58.8
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
..++|||+|||..+++++|+++|.+||.|..| +.+..+++ ||||+|.+.++|++||. |||..|.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 34799999999999999999999999999987 55555554 99999999999999999 99999987
No 283
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.6e-13 Score=116.21 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=68.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V~~ 272 (777)
...+|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4568999999999999999999999999999988853 7999999999999999999874 6789999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 8543
No 284
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.3e-13 Score=121.25 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=73.4
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeecccccc
Q 004041 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V 270 (777)
....+|||+|||++ +++++|+++|.+||.|+.|.|++ ++|||||+|.+.++|..|++.|+ +..|.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34678999999998 99999999999999999999974 47999999999999999999886 45699999999
Q ss_pred CCCCCCCCcccc
Q 004041 271 TPSQDSDTLFLG 282 (777)
Q Consensus 271 ~~a~~~~~l~V~ 282 (777)
.++.....+.++
T Consensus 97 ~~a~~~~~~~~~ 108 (112)
T 1x4f_A 97 DLSEKYKKLVSG 108 (112)
T ss_dssp EEECSCSSSSCC
T ss_pred EECccccccccC
Confidence 999877766654
No 285
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.38 E-value=4.4e-13 Score=130.69 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=76.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 544
No 286
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=4e-13 Score=115.16 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=76.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346789999999999999999999999 99999884 56899999999999999999999999999999999999
Q ss_pred CCCCCcccccc
Q 004041 274 QDSDTLFLGNI 284 (777)
Q Consensus 274 ~~~~~l~V~nL 284 (777)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88877777663
No 287
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=2.1e-13 Score=126.92 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+++|+++|+++|.+|| |+.|.|+.++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999 77999999876 999999999999999999999 68999999999999776
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 288
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.3e-13 Score=122.21 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCce----eEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccc
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV----TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v----~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (777)
.....+|||+|||+.+|+++|+++|.+||.| ..|.|+.+ .+++++|||||+|.+.++|++||+. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567889999999999999999999999875 68999988 5799999999999999999999996 9999999998
Q ss_pred ccCCC
Q 004041 269 GVTPS 273 (777)
Q Consensus 269 ~V~~a 273 (777)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 88654
No 289
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6e-13 Score=119.94 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc--CCeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V~~ 272 (777)
...+|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4678999999999999999999999999999999864 7999999999999999999887 4689999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 8544
No 290
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=123.24 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=65.4
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCe----EEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEI----TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v----~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
..+|||+|||+.+|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||.. |+..|.+. .+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR--~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR--YIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC--EEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe--EEE
Confidence 3799999999999999999999999975 68999988 4899999999999999999999985 88888753 344
Q ss_pred EEE
Q 004041 449 VRA 451 (777)
Q Consensus 449 v~~ 451 (777)
|..
T Consensus 99 V~~ 101 (123)
T 2dha_A 99 LFR 101 (123)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 291
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-12 Score=111.55 Aligned_cols=75 Identities=16% Similarity=0.385 Sum_probs=64.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
...++|||+|| .+++++|+++|.+||.|..|.|. +++|||||+|.+.++|++||..|||..|.+ ..+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 80 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLK 80 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEE
Confidence 34589999996 89999999999999999999985 458899999999999999999999999986 4556
Q ss_pred EeecCCC
Q 004041 451 ARLSRPL 457 (777)
Q Consensus 451 ~~~~~~~ 457 (777)
+.++++.
T Consensus 81 v~~a~~~ 87 (97)
T 1x5p_A 81 VNIARKQ 87 (97)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 6666553
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=5.8e-13 Score=117.48 Aligned_cols=70 Identities=21% Similarity=0.456 Sum_probs=65.2
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++|+. ++..|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 345899999999999999999999999999999999998 99999999999999999999998 88888763
No 293
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.1e-13 Score=119.52 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=66.8
Q ss_pred ceeecCCC----CCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEecc----HHH----HHHHHH--HhCCCe
Q 004041 374 KTVFVDGL----PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT----HDA----AVTCAK--SINNAE 439 (777)
Q Consensus 374 ~~l~V~nL----p~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~----~~~----A~~A~~--~l~g~~ 439 (777)
+.|||+|| |+.+++.+|+++|+.||.|..|.++.|+.||+++|||||+|.+ +.+ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCCcceEEEEEeec
Q 004041 440 LGEGDNKAKVRARLS 454 (777)
Q Consensus 440 ~~g~~~~~~v~~~~~ 454 (777)
|.| +.+++.+.
T Consensus 83 I~G----r~irV~ln 93 (136)
T 2j8a_A 83 IMG----FKFEVILN 93 (136)
T ss_dssp ETT----EEEEEEEC
T ss_pred ecC----cEEEEEEC
Confidence 997 44444443
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=116.90 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.| .|+.+ .++++++||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 356789999999999999999999999977 45555 67889999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-13 Score=121.04 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=72.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4578999999999999999999999999888 666666778999999999999999999999 99999999999999885
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 296
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.5e-13 Score=121.92 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+. +++||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467899999999999999999999999999998863 5789999999999999999999999999999999987
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 297
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=120.51 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=72.0
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...+|||+|||+.+++++|+ ++|++||.|+.|.+.. +++++|||||+|.+.++|..|+..||+..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46789999999999999876 6999999999988753 5788999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004041 271 TPSQDSD 277 (777)
Q Consensus 271 ~~a~~~~ 277 (777)
.++....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9886553
No 298
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=114.63 Aligned_cols=76 Identities=16% Similarity=0.398 Sum_probs=69.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee--ccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~--gr~i~V~~ 272 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++|++.||+..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4567999999999999999999999999999998753 789999999999999999999999999 99999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 299
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.2e-13 Score=116.18 Aligned_cols=80 Identities=24% Similarity=0.468 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|..| ..|.++.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 456779999999999999999999977 36788888888999999999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 300
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=3e-12 Score=121.35 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=68.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
...+|||+||++.+|+++|+++|++||.|..|.|... .++|||||+|.+.++|++|++.|||..|.++.. .+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--~L~V 118 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRI 118 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS--CEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc--EEEE
Confidence 3478999999999999999999999999999999754 257899999999999999999999999976443 4555
Q ss_pred eecCCC
Q 004041 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.++++.
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 666654
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.2e-12 Score=112.49 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=60.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEE
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (777)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|+ .|++..+.+.++ .|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~--~v~ 77 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGI--SVH 77 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTE--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCE--EEE
Confidence 45589999999999999999999999999999999874 6899999999999987 367777764444 444
Q ss_pred EeecCC
Q 004041 451 ARLSRP 456 (777)
Q Consensus 451 ~~~~~~ 456 (777)
+.++.+
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 455544
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=110.63 Aligned_cols=74 Identities=28% Similarity=0.507 Sum_probs=68.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc-cCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~~ 272 (777)
...++|||+|||..+++++|+++|.+||.|..|.|+. +++||||+|.+.++|.+|+..| ++..|.|+.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 3456799999999999999999999999999999986 3789999999999999999999 99999999999987
Q ss_pred C
Q 004041 273 S 273 (777)
Q Consensus 273 a 273 (777)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 303
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=8.6e-13 Score=119.18 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (777)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 34678999999999999999999999999999999854 899999999999999999999999999996654
No 304
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.8e-13 Score=118.92 Aligned_cols=68 Identities=21% Similarity=0.452 Sum_probs=61.4
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCcccEEEEEeccHHHHHHHHHHh---CCCee
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSI---NNAEL 440 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~A~~A~~~l---~g~~~ 440 (777)
..++|||+|||..+++++|+++|.+||.|. +.++.+..+ |+++|||||+|.+.++|++||+.| ||+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 348999999999999999999999999999 888888777 799999999999999999999998 55433
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.2e-13 Score=121.91 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=70.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45789999999999999999999999998443332222368899999999999999999999999999999999999885
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 104 ~~ 105 (115)
T 2cpx_A 104 NK 105 (115)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.5e-14 Score=126.79 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=77.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (777)
....+|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34567999999999999999999999999998 8999988889999999999999999999999999999999
Q ss_pred cccccCCCCCC
Q 004041 266 KQCGVTPSQDS 276 (777)
Q Consensus 266 r~i~V~~a~~~ 276 (777)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999988544
No 307
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=8.8e-13 Score=120.41 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=63.1
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeE--EEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~--~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
..++|||+|||+.+|+++|+++|++| .|+ .|.|+.++. |+++|||||+|.+.++|++||. +++..|.+..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 34789999999999999999999999 566 899999976 9999999999999999999998 5778888643
No 308
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=114.53 Aligned_cols=77 Identities=26% Similarity=0.417 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|. +.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456899999999999999999999999997 66665 3678999999999999999999999999999999998876
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 309
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.3e-12 Score=115.43 Aligned_cols=76 Identities=28% Similarity=0.315 Sum_probs=68.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC--CeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V~~ 272 (777)
...+|||+|||+.+++++|+++|.+||.|..|.|+++ ++||||+|.+.++|.+|++.|++ ..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568999999999999999999999999999998753 78999999999999999998865 458999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8654
No 310
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.35 E-value=1.8e-12 Score=115.60 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=71.2
Q ss_pred HhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 191 ~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
......++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567889999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 988654
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=110.95 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=67.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||+.+++++|+++|.+||.|..| +.+..+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45689999999999999999999999999987 55555554 99999999999999999 99999999999999875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 312
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=8.4e-13 Score=120.54 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCcee--EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~--~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (777)
....+|||+|||+.+|+++|+++|.+| .|+ .|.|+.++. |+++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 566 899999877 99999999999999999999995 7789999999987
Q ss_pred CC
Q 004041 272 PS 273 (777)
Q Consensus 272 ~a 273 (777)
++
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 313
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=1.1e-12 Score=145.98 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=76.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+|+++|.++|.+||.|+.|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34679999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 314
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=3.2e-12 Score=122.85 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=72.0
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|+..|||..|.+ ..+.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC----ceEEEE
Confidence 3799999999999999999999999999999999999899999999999999999999999999999986 334444
Q ss_pred ecCC
Q 004041 453 LSRP 456 (777)
Q Consensus 453 ~~~~ 456 (777)
++.+
T Consensus 78 ~~~~ 81 (167)
T 1fxl_A 78 YARP 81 (167)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 4443
No 315
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=112.05 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4567899999999999999999999999999999973 39999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
....
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6543
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=111.45 Aligned_cols=75 Identities=24% Similarity=0.511 Sum_probs=69.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|++ +||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999999973 39999999999999999999999999999999988
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 317
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.34 E-value=2.5e-12 Score=123.92 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=72.5
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.+ ..+.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN----KRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC----cEEEEE
Confidence 4899999999999999999999999999999999999899999999999999999999999999999986 344445
Q ss_pred ecCC
Q 004041 453 LSRP 456 (777)
Q Consensus 453 ~~~~ 456 (777)
++.+
T Consensus 79 ~~~~ 82 (168)
T 1b7f_A 79 YARP 82 (168)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 5544
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.33 E-value=3.9e-13 Score=126.51 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=66.5
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEE-----eecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL-----ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i-----~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
.+.++|||+|||..+|+++|+.+|.+||.|..|.| +....+++++|||||+|.+.++|.+||..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 34589999999999999999999999999876410 1112368899999999999999999999999999986
Q ss_pred eEEEEEeecCC
Q 004041 446 KAKVRARLSRP 456 (777)
Q Consensus 446 ~~~v~~~~~~~ 456 (777)
..+.+.++++
T Consensus 120 -~~l~V~~a~~ 129 (143)
T 3egn_A 120 -KPMVVQFARS 129 (143)
T ss_dssp -EECEEEECCC
T ss_pred -cEEEEEECCC
Confidence 4445555544
No 319
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.33 E-value=2.9e-12 Score=111.87 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=70.0
Q ss_pred hcCCcceEEEeCCCC-CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 192 RKRKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 192 ~~~~~~~lfV~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
.....++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678899999998 99999999999999999999983 789999999999999999999999999999999
Q ss_pred CCCCCC
Q 004041 271 TPSQDS 276 (777)
Q Consensus 271 ~~a~~~ 276 (777)
.++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887543
No 320
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=4.3e-12 Score=112.32 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=63.9
Q ss_pred cccceeecCCCCC-----CCCHHHHHHHhhccCCeEEEEEeecCCC-CCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPA-----SWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~-----~~t~~dL~~~F~~~G~v~~v~i~~~~~~-g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.++++|+|.||.. ..++++|+++|++||.|..|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999999973 2378999999999999999999998654 6889999999999999999999999999987
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=1.8e-12 Score=114.55 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=68.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 35679999999999999999999999999999987 4599999999999999999999999999999999885
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 322
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.3e-12 Score=112.32 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 194 RKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 194 ~~~~~lfV~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
...++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4577899999998 99999999999999999999984 68999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 7443
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=117.70 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=66.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCC---CCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
...++|||+|||+.+++++|+++|.+||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3467899999999999999999999999999 888887776 7899999999999999999999884 366766665
Q ss_pred CCC
Q 004041 271 TPS 273 (777)
Q Consensus 271 ~~a 273 (777)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 324
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=9.7e-13 Score=114.83 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=73.7
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (777)
...++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|..|+..||+..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999 9999999999999873 467889999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004041 270 VTPSQDSD 277 (777)
Q Consensus 270 V~~a~~~~ 277 (777)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99886654
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=2.8e-12 Score=109.86 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=62.9
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEEe
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (777)
.++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|++|+..|||..|.| ..+.+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~ 73 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQ 73 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEE
Confidence 4899999999999999999999999 99999885 568999999999999999999999999987 334444
Q ss_pred ec
Q 004041 453 LS 454 (777)
Q Consensus 453 ~~ 454 (777)
++
T Consensus 74 ~a 75 (88)
T 1wg1_A 74 LQ 75 (88)
T ss_dssp EC
T ss_pred Ec
Confidence 44
No 326
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.5e-12 Score=111.11 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcc--CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQV--GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~--G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
..++|||+|||+.+++++|+++|.+| |.|..|.+. ++||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45789999999999999999999999 899988875 57999999999999999999999999999999998
Q ss_pred CCCCC
Q 004041 273 SQDSD 277 (777)
Q Consensus 273 a~~~~ 277 (777)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=1.1e-12 Score=115.59 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999997 89999999999999999999999 8889999999887653
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=3.4e-12 Score=108.87 Aligned_cols=66 Identities=14% Similarity=0.424 Sum_probs=60.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNY----G-------EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~----G-------~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~ 439 (777)
.+.++|||+|||..+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345899999999999999999999999 8 8999999765 789999999999999999 999999
Q ss_pred eCCC
Q 004041 440 LGEG 443 (777)
Q Consensus 440 ~~g~ 443 (777)
|.|.
T Consensus 77 ~~g~ 80 (87)
T 2hzc_A 77 FQGQ 80 (87)
T ss_dssp ETTE
T ss_pred ECCe
Confidence 9873
No 329
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.1e-12 Score=110.62 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=61.6
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v-~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
..++|||+|||..+++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||..|||..|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34899999999999999999999999999999 588776544 499999999999999999999999873
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.7e-12 Score=116.11 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.6
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecC----HHH----HHHHHH--hccCCe
Q 004041 197 FEVFVGGL----DKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT----VEQ----ARQAVT--ELKNPV 262 (777)
Q Consensus 197 ~~lfV~nL----p~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s----~e~----A~~Al~--~l~~~~ 262 (777)
.+|||+|| |+.+++.+|+++|+.||.|..|.++.|+.||.++|||||+|.+ .+. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 9999999999999999999999999999999999999999996 322 888888 789999
Q ss_pred eeccccccCCCCCC
Q 004041 263 INGKQCGVTPSQDS 276 (777)
Q Consensus 263 ~~gr~i~V~~a~~~ 276 (777)
|.|+.|+|......
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999865444
No 331
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.30 E-value=1.2e-12 Score=114.07 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45789999999999999999999999988766 3457889999999999999999999999999999999998875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
+.
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.30 E-value=3.4e-12 Score=114.26 Aligned_cols=73 Identities=27% Similarity=0.528 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..++|||+|||+. +++++|+++|.+||.|..|.| +++||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999 999999999999999999998 4789999999999999999999999999999999987
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=111.93 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEE-EEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..++|||+|||+.+++++|+++|.+||.|..| .|+.+..++ .|||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45779999999999999999999999999999 577765543 3999999999999999999999999999999987
Q ss_pred CCC
Q 004041 274 QDS 276 (777)
Q Consensus 274 ~~~ 276 (777)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 334
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=106.66 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=67.7
Q ss_pred cceEEEeCCCCCCCHHH----HHHHhhcc-CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 196 EFEVFVGGLDKDVVGDD----LRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~----L~~~f~~~-G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
.+.|||+|||+.+++++ |.++|.+| |+|..| ++ |+|||.|.+.++|.+|++.|++..|.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999888 55899999 599988 23 99999999999999999999999999999999
Q ss_pred CCCCCCCCcccc
Q 004041 271 TPSQDSDTLFLG 282 (777)
Q Consensus 271 ~~a~~~~~l~V~ 282 (777)
.++.....++..
T Consensus 79 ~~A~~~sd~~~~ 90 (96)
T 2diu_A 79 SFTPKNRELCET 90 (96)
T ss_dssp ESSCCSCCCCCC
T ss_pred EecCCCcceeEe
Confidence 999887766543
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.9e-12 Score=110.92 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=67.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCc-eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccC-CeeeccccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-PVINGKQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~-~~~~gr~i~V~~ 272 (777)
..++|||+|||+.+++++|+++|.+||. |..+.+. +++||||+|.+.++|.+|++.||+ ..|.|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4567999999999999999999999999 6655553 478999999999999999999999 999999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8554
No 336
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=6.3e-12 Score=106.38 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=57.6
Q ss_pred ceeecCCCCCCCCHHH----HHHHhhcc-CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEE
Q 004041 374 KTVFVDGLPASWDEDR----VRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~d----L~~~F~~~-G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (777)
+.|||+|||+.+++++ |+++|.+| |.|..| ++ |||||+|.+.++|++|++.|||..|.|+ .
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr----~ 75 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN----R 75 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS----C
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc----e
Confidence 3499999999999887 55899999 599888 23 8999999999999999999999999973 3
Q ss_pred EEEeecCC
Q 004041 449 VRARLSRP 456 (777)
Q Consensus 449 v~~~~~~~ 456 (777)
+++.+++.
T Consensus 76 i~v~~A~~ 83 (96)
T 2diu_A 76 IIVSFTPK 83 (96)
T ss_dssp CEEESSCC
T ss_pred EEEEecCC
Confidence 44455543
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=122.83 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEE--------EEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV--------RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v--------~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (777)
...++|||+|||+.+|+++|+++|.+||.|..| .+. .++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 356789999999999999999999999998764 332 468899999999999999999999999999999
Q ss_pred cccccCCCCC
Q 004041 266 KQCGVTPSQD 275 (777)
Q Consensus 266 r~i~V~~a~~ 275 (777)
+.|.|.++..
T Consensus 120 ~~l~V~~a~~ 129 (143)
T 3egn_A 120 KPMVVQFARS 129 (143)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEECCC
Confidence 9999998754
No 338
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.26 E-value=1e-11 Score=122.90 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=67.0
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 4558999999999999999999999999999999999999999999999999999999999975 8899986
No 339
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.7e-12 Score=107.86 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=60.7
Q ss_pred ccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceEEEEE
Q 004041 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (777)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++ |++..+.... +.|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g--~~l~v 72 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKG--ISVHI 72 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETT--EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCC--EEEEE
Confidence 3489999999999999999999999999999999865 58899999999999975 4555554333 55556
Q ss_pred eecCCC
Q 004041 452 RLSRPL 457 (777)
Q Consensus 452 ~~~~~~ 457 (777)
.++.++
T Consensus 73 ~~a~~~ 78 (88)
T 1wf0_A 73 SNAEPK 78 (88)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 666553
No 340
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.26 E-value=1.2e-11 Score=112.92 Aligned_cols=79 Identities=24% Similarity=0.279 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHhccCCeeec--ccccc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGV 270 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~-afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V 270 (777)
..-..|||+||++.+|+++|.++|++||.|..|.|+.. .++| |||+|.+.++|++|++.||+..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34456889999999999999999999999999998863 3677 9999999999999999999999998 88999
Q ss_pred CCCCCCC
Q 004041 271 TPSQDSD 277 (777)
Q Consensus 271 ~~a~~~~ 277 (777)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9886653
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.26 E-value=9.3e-12 Score=106.11 Aligned_cols=71 Identities=23% Similarity=0.475 Sum_probs=65.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcc----C-------ceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
..++|||+|||+.+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45789999999999999999999999 8 8999988753 799999999999999999 9999999
Q ss_pred eccccccCC
Q 004041 264 NGKQCGVTP 272 (777)
Q Consensus 264 ~gr~i~V~~ 272 (777)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999998864
No 342
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.7e-11 Score=106.88 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|| .+++++|+++|.+||.|..|.|. .+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34678999996 89999999999999999999984 46899999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 274 QDSD 277 (777)
Q Consensus 274 ~~~~ 277 (777)
....
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 343
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.25 E-value=1.4e-11 Score=123.80 Aligned_cols=84 Identities=23% Similarity=0.475 Sum_probs=78.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
.....+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 7554
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.24 E-value=1.8e-11 Score=121.03 Aligned_cols=72 Identities=24% Similarity=0.448 Sum_probs=64.4
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
...++|||+|||..+++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|++|+..+ +..|.|..
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~ 178 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETD 178 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEE
Confidence 345899999999999999999999999999999999886 5889999999999999999999755 45888743
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=1.3e-11 Score=116.91 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec--cccccCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTP 272 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V~~ 272 (777)
.-.+|||+||++.+|+++|+++|++||.|..|.|+.. .+++||||+|.+.++|+.|++.||+..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4466999999999999999999999999999999753 257899999999999999999999999966 9999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8765
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=2.3e-11 Score=110.53 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=67.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHhccCCeeec--cccccCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGVTP 272 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~-afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V~~ 272 (777)
-..|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.||+..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999999752 276 9999999999999999999999988 5889998
Q ss_pred CCCCC
Q 004041 273 SQDSD 277 (777)
Q Consensus 273 a~~~~ 277 (777)
+....
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 87654
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.22 E-value=1.5e-11 Score=111.93 Aligned_cols=65 Identities=17% Similarity=0.361 Sum_probs=58.9
Q ss_pred cccceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
...++|||+|| .+++++|+++|.+||.|..|.|. .++|||||+|.+.++|++||..|||..|.|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34589999996 69999999999999999999986 4588999999999999999999999999863
No 348
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=9.1e-12 Score=119.84 Aligned_cols=80 Identities=21% Similarity=0.468 Sum_probs=75.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (777)
..+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5679999999999999999999999999999999998899999999999999999999998 899999999999998765
Q ss_pred C
Q 004041 276 S 276 (777)
Q Consensus 276 ~ 276 (777)
.
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=3.5e-11 Score=106.44 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCC-----CCCHHHHHHHhhccCceeEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHhccCCeeeccc
Q 004041 194 RKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (777)
Q Consensus 194 ~~~~~lfV~nLp~-----~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~ 267 (777)
....+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999973 2478999999999999999999988654 688999999999999999999999999999999
Q ss_pred cccCCCC
Q 004041 268 CGVTPSQ 274 (777)
Q Consensus 268 i~V~~a~ 274 (777)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998763
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=110.01 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=63.5
Q ss_pred CcceEEE--eCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee-----eccc
Q 004041 195 KEFEVFV--GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-----NGKQ 267 (777)
Q Consensus 195 ~~~~lfV--~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~-----~gr~ 267 (777)
...+||| +||++.+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|++|++.||+..| .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4567999 77999999999999999999999988763 378999999999999999999999988 5677
Q ss_pred cccCCC
Q 004041 268 CGVTPS 273 (777)
Q Consensus 268 i~V~~a 273 (777)
|.|.++
T Consensus 98 l~v~~a 103 (114)
T 2cq2_A 98 LYLNFV 103 (114)
T ss_dssp CEEEEE
T ss_pred EEEEec
Confidence 766543
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.20 E-value=2.3e-11 Score=104.33 Aligned_cols=74 Identities=28% Similarity=0.459 Sum_probs=60.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCe--eecccccc
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV--INGKQCGV 270 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~--~~gr~i~V 270 (777)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345678999999999999999999999999999999864 68999999999999984 34444 45888888
Q ss_pred CCCCC
Q 004041 271 TPSQD 275 (777)
Q Consensus 271 ~~a~~ 275 (777)
.++.+
T Consensus 79 ~~a~~ 83 (89)
T 3d2w_A 79 SNAEP 83 (89)
T ss_dssp EECC-
T ss_pred EEcCC
Confidence 77654
No 352
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=2.6e-11 Score=119.91 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 345789999999999999999999999999999999875 48899999999999999999998665 5899999999876
Q ss_pred CC
Q 004041 274 QD 275 (777)
Q Consensus 274 ~~ 275 (777)
.+
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=3.3e-11 Score=106.58 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=61.7
Q ss_pred ccceeecCCCC--CCCC--------HHHHHHHhhccCCeEEEEEeecCCC--CCcccEEEEEeccHHHHHHHHHHhCCCe
Q 004041 372 QVKTVFVDGLP--ASWD--------EDRVRELLKNYGEITKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (777)
Q Consensus 372 ~~~~l~V~nLp--~~~t--------~~dL~~~F~~~G~v~~v~i~~~~~~--g~~kg~afV~F~~~~~A~~A~~~l~g~~ 439 (777)
++++|+|.||- ..+. +++|+++|++||.|..|.|+++..+ +.++|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788898883 3332 4799999999999999999988755 4689999999999999999999999999
Q ss_pred eCCC
Q 004041 440 LGEG 443 (777)
Q Consensus 440 ~~g~ 443 (777)
|.|+
T Consensus 84 f~GR 87 (105)
T 3v4m_A 84 FANR 87 (105)
T ss_dssp ETTE
T ss_pred eCCC
Confidence 9873
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.7e-11 Score=104.79 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=63.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4678999999999999999999999999999999854 689999999999999865432 345688999998875
Q ss_pred CC
Q 004041 275 DS 276 (777)
Q Consensus 275 ~~ 276 (777)
+.
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.16 E-value=3.3e-11 Score=121.89 Aligned_cols=64 Identities=28% Similarity=0.516 Sum_probs=60.1
Q ss_pred cccceeecCCCCCCC---------CHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCee
Q 004041 371 AQVKTVFVDGLPASW---------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~---------t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~ 440 (777)
...++|||+||+..+ ++++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 456899999999998 79999999999999999999864 78999999999999999999999999
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.16 E-value=4.7e-11 Score=108.66 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=68.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCC
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (777)
....++|||+|| .+++++|+++|.+||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345788999996 69999999999999999999986 4689999999999999999999999999999999998
Q ss_pred CCCC
Q 004041 273 SQDS 276 (777)
Q Consensus 273 a~~~ 276 (777)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7654
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.2e-10 Score=102.76 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=63.2
Q ss_pred cccceeecCCCCCCCC-----------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCe
Q 004041 371 AQVKTVFVDGLPASWD-----------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t-----------~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~ 439 (777)
.++++|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|++||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568999999955432 5899999999999999966 443 379999999999999999999999999
Q ss_pred eCCCcceEEEEEeecCC
Q 004041 440 LGEGDNKAKVRARLSRP 456 (777)
Q Consensus 440 ~~g~~~~~~v~~~~~~~ 456 (777)
|.+ ..|.+.++.+
T Consensus 89 ~~g----r~l~v~~a~~ 101 (112)
T 2dit_A 89 FGG----RQITAQAWDG 101 (112)
T ss_dssp ETT----EECEEEECCS
T ss_pred ECC----cEEEEEEeCC
Confidence 986 3444455444
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=7.3e-11 Score=106.49 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=62.8
Q ss_pred ccceeecCCCCCC-----CCHHHHHHHhhccCCeEEEEEeecCC----CCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPAS-----WDEDRVRELLKNYGEITKIELARNMP----SAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~-----~t~~dL~~~F~~~G~v~~v~i~~~~~----~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
++++|+|.||-.. -.+++|+++|++||.|..|.|+++.. ++.++|||||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4588999998432 23689999999999999999998864 46778999999999999999999999999997
Q ss_pred Cc
Q 004041 443 GD 444 (777)
Q Consensus 443 ~~ 444 (777)
+.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 33
No 359
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.13 E-value=9.7e-11 Score=123.08 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.1
Q ss_pred cccceeecCCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 371 AQVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~dL~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.++|||+|||..+++++|+ ++|.+||.|..|.|++ +++++|||||+|.+.++|.+||..|||..|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 345899999999999999977 8999999999999886 67889999999999999999999999999987
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.4e-10 Score=102.45 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=69.8
Q ss_pred cCCcceEEEeCCCCCCC-----------HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCC
Q 004041 193 KRKEFEVFVGGLDKDVV-----------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~t-----------e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (777)
.....+|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|.+|+..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34577899999954432 5799999999999999966 443 37999999999999999999999999
Q ss_pred eeeccccccCCCCCCCCc
Q 004041 262 VINGKQCGVTPSQDSDTL 279 (777)
Q Consensus 262 ~~~gr~i~V~~a~~~~~l 279 (777)
.|.|+.|.|.++......
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999988665443
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=5.9e-11 Score=104.85 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=56.4
Q ss_pred cCCCCCCCCHHHHHHHh------------hccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCc
Q 004041 378 VDGLPASWDEDRVRELL------------KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (777)
Q Consensus 378 V~nLp~~~t~~dL~~~F------------~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (777)
+.||++.+++++|+++| ++||.|..|.|+++.. ++++|||||+|.+.++|++|+..|||+.|.|..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56677777777666555 9999999999998764 789999999999999999999999999999743
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.07 E-value=1.1e-10 Score=118.24 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=69.9
Q ss_pred cCCcceEEEeCCCCCC---------CHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004041 193 KRKEFEVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~---------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
.....+|||+||+..+ ++++|+++|.+||.|..|+|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457889999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ------------eccccccCCCCCC
Q 004041 264 ------------NGKQCGVTPSQDS 276 (777)
Q Consensus 264 ------------~gr~i~V~~a~~~ 276 (777)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999988544
No 363
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.07 E-value=1.4e-10 Score=112.43 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCC
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (777)
...+|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46789999999999999999999999987765 4568899999999999999999999999999999999998875
Q ss_pred C
Q 004041 275 D 275 (777)
Q Consensus 275 ~ 275 (777)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=3.8e-10 Score=120.37 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=63.8
Q ss_pred cccceeecCC--CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC-cceE
Q 004041 371 AQVKTVFVDG--LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-DNKA 447 (777)
Q Consensus 371 ~~~~~l~V~n--Lp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~-~~~~ 447 (777)
.++++|||+| |+..+|+++|+++|++||.|..|.|.. +||||||+|.+.++|++||+.|||+.+.+. +..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4568999999 578899999999999999999988754 378999999999999999999999998421 2333
Q ss_pred EEEEeec
Q 004041 448 KVRARLS 454 (777)
Q Consensus 448 ~v~~~~~ 454 (777)
.+.+.+.
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 4444444
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.99 E-value=1.2e-10 Score=102.77 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=60.9
Q ss_pred EeCCCCCCCHHHHHHHh------------hccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccc
Q 004041 201 VGGLDKDVVGDDLRKVF------------SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (777)
Q Consensus 201 V~nLp~~~te~~L~~~f------------~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (777)
+.||++.+++++|+++| ++||.|..|.|+++.. ++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666666665555 9999999999998754 7899999999999999999999999999999999
Q ss_pred ccCCC
Q 004041 269 GVTPS 273 (777)
Q Consensus 269 ~V~~a 273 (777)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98764
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.99 E-value=4.2e-10 Score=99.47 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=67.6
Q ss_pred CcceEEEeCC--CCCC--------CHHHHHHHhhccCceeEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHhccCCe
Q 004041 195 KEFEVFVGGL--DKDV--------VGDDLRKVFSQVGEVTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPV 262 (777)
Q Consensus 195 ~~~~lfV~nL--p~~~--------te~~L~~~f~~~G~v~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (777)
...+|.|.|+ |... .+++|+++|++||.|+.|.|+++..+ +.++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567899998 3333 24789999999999999999987654 3679999999999999999999999999
Q ss_pred eeccccccCCC
Q 004041 263 INGKQCGVTPS 273 (777)
Q Consensus 263 ~~gr~i~V~~a 273 (777)
|.|+.|.|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999998764
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=6.3e-10 Score=100.30 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=70.1
Q ss_pred cCCcceEEEeCCCC-----CCCHHHHHHHhhccCceeEEEEeeCCC----CCCCcceEEEEecCHHHHHHHHHhccCCee
Q 004041 193 KRKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (777)
Q Consensus 193 ~~~~~~lfV~nLp~-----~~te~~L~~~f~~~G~v~~v~i~~d~~----~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (777)
.....+|+|.||-. +-.+++|++.|.+||.|..|.|+++.. ++.++||+||+|.+.++|.+|++.||+..|
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 34678899999942 224689999999999999999998754 356789999999999999999999999999
Q ss_pred eccccccCCC
Q 004041 264 NGKQCGVTPS 273 (777)
Q Consensus 264 ~gr~i~V~~a 273 (777)
.|+.|.|.++
T Consensus 97 ~GR~i~v~~~ 106 (118)
T 3ue2_A 97 AGRKVVAEVY 106 (118)
T ss_dssp TTEECEEEEE
T ss_pred CCcEEEEEEc
Confidence 9999998765
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=93.02 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 004041 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 383 ~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g 437 (777)
..+++++|+++|.+||.|..|.|+ ++++|||||+|.+.++|++||..+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 568999999999999999999998 36799999999999999999998665
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.91 E-value=1.9e-09 Score=96.43 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccceeecCCCCCCCC----------HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeC
Q 004041 372 QVKTVFVDGLPASWD----------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (777)
Q Consensus 372 ~~~~l~V~nLp~~~t----------~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~ 441 (777)
++++|.|.||-.... +++|+++|++||.|..|.|.++. .+|||||+|.+.++|.+|+..|||+.|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457788888754322 36899999999999999997663 4899999999999999999999999999
Q ss_pred CCc
Q 004041 442 EGD 444 (777)
Q Consensus 442 g~~ 444 (777)
|+.
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 743
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=4.8e-09 Score=94.01 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=62.3
Q ss_pred cccceeecCCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEecc-HHHHHHHHHHhC--CCeeCCCcce
Q 004041 371 AQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT-HDAAVTCAKSIN--NAELGEGDNK 446 (777)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~-~~~A~~A~~~l~--g~~~~g~~~~ 446 (777)
.+...|+|+||+.. ++.++|+++|++||.|.+|+|+++.. +|||+|.+ ..+|..|+..|| +..|.+ ..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g--~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN--KE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS--SS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC--cE
Confidence 45689999999999 99999999999999999999998854 79999999 899999999995 566665 44
Q ss_pred EEEEE
Q 004041 447 AKVRA 451 (777)
Q Consensus 447 ~~v~~ 451 (777)
+++.+
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-08 Score=89.32 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCC
Q 004041 206 KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (777)
Q Consensus 206 ~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (777)
..+++++|+++|.+||.|..|.|+ ++++|||||+|.+.++|..||+.+++ +.++.|.|.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 458999999999999999999998 36799999999999999999998554 67999999887554
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=1.6e-08 Score=107.76 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=57.7
Q ss_pred CCcceEEEeC--CCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004041 194 RKEFEVFVGG--LDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 194 ~~~~~lfV~n--Lp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
....+|||+| |++.+|+++|+++|.+||.|..|.|.. .+|||||+|.+.++|++|++.||+..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 3456799999 588999999999999999999887753 4799999999999999999999999874
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.68 E-value=2.6e-08 Score=89.06 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred cceEEEeCCCCCCC----------HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec
Q 004041 196 EFEVFVGGLDKDVV----------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (777)
Q Consensus 196 ~~~lfV~nLp~~~t----------e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (777)
..+|.|.|+=.... +++|+++|++||.|+.|.|.++. .+|||||+|.+.++|.+|++.||+..|.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45688888854322 46789999999999999987642 48999999999999999999999999999
Q ss_pred cccccCCC
Q 004041 266 KQCGVTPS 273 (777)
Q Consensus 266 r~i~V~~a 273 (777)
+.|.|.++
T Consensus 83 R~i~v~~~ 90 (114)
T 3s6e_A 83 KMITAAYV 90 (114)
T ss_dssp EECEEEEE
T ss_pred EEEEEEEE
Confidence 99998764
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=9.1e-08 Score=80.24 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=55.2
Q ss_pred ceeecCCCCC----CCCH----HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcc
Q 004041 374 KTVFVDGLPA----SWDE----DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (777)
Q Consensus 374 ~~l~V~nLp~----~~t~----~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (777)
-||+|.-++. ++-. .+|.+.|.+||.|..|+|+.+ .+||+|.+.++|.+||. |||..|.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G--- 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN--- 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT---
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC---
Confidence 5666666552 2323 679999999999999999987 58999999999999998 99999987
Q ss_pred eEEEEEeecCC
Q 004041 446 KAKVRARLSRP 456 (777)
Q Consensus 446 ~~~v~~~~~~~ 456 (777)
+.+++.+.+|
T Consensus 76 -r~LkV~lkt~ 85 (91)
T 2dnr_A 76 -RTITIALKSP 85 (91)
T ss_dssp -EEEEEEECCC
T ss_pred -eEEEEEeCCC
Confidence 4455555543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.1e-07 Score=85.29 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecC-HHHHHHHHHhcc--CCeeeccccc
Q 004041 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT-VEQARQAVTELK--NPVINGKQCG 269 (777)
Q Consensus 194 ~~~~~lfV~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s-~e~A~~Al~~l~--~~~~~gr~i~ 269 (777)
...+.|+|+||+.. ++.++|+++|++||.|..|.|+.+.. +|||.|.+ ..+|+.|+..|| +..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45788999999999 99999999999999999999987644 59999999 899999999984 5566665555
Q ss_pred cC
Q 004041 270 VT 271 (777)
Q Consensus 270 V~ 271 (777)
+.
T Consensus 90 ~e 91 (121)
T 1owx_A 90 WE 91 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=9.2e-07 Score=89.14 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeecCC----CCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcceE
Q 004041 384 SWDEDRVRELLKNYGEITKIELARNMP----SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (777)
Q Consensus 384 ~~t~~dL~~~F~~~G~v~~v~i~~~~~----~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (777)
.-.+++|++.|.+||.|..|.|+++.. ++.++|++||+|.+.++|.+|+..|||+.|.|+.+.+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 345689999999999999999986543 4589999999999999999999999999999855433
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=2e-07 Score=78.23 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=59.8
Q ss_pred CcceEEEeCCCC----CCCH----HHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecc
Q 004041 195 KEFEVFVGGLDK----DVVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266 (777)
Q Consensus 195 ~~~~lfV~nLp~----~~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr 266 (777)
...||+|.-++. ++-. .+|.+.|.+||.|+.++|+.+. +||+|.+.++|.+||+ ||+..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345788887762 3333 6789999999999999999763 8999999999999999 999999999
Q ss_pred ccccCCCC
Q 004041 267 QCGVTPSQ 274 (777)
Q Consensus 267 ~i~V~~a~ 274 (777)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=6.1e-07 Score=75.59 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred ccceeecCCCCCC-----CCH----HHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 372 QVKTVFVDGLPAS-----WDE----DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 372 ~~~~l~V~nLp~~-----~t~----~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
+.-||+|.-++.. +-. .+|.+.|.+||.|..|+|+.+ -+||+|.+.++|.+||. |||..|.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3468888877632 222 568999999999999999987 59999999999999998 99999997
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=8.5e-07 Score=74.69 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCcceEEEeCCCCC-----CCH----HHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeee
Q 004041 194 RKEFEVFVGGLDKD-----VVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (777)
Q Consensus 194 ~~~~~lfV~nLp~~-----~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (777)
....||+|.-++.. +-. .+|.+.|.+||.|+.++|+.+. +||+|.+.++|.+||+ ||+..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34568999988743 222 5689999999999999999763 9999999999999999 9999999
Q ss_pred ccccccCCC
Q 004041 265 GKQCGVTPS 273 (777)
Q Consensus 265 gr~i~V~~a 273 (777)
|+.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.04 E-value=3.7e-06 Score=84.62 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhccCceeEEEEeeCCC----CCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCC
Q 004041 208 VVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (777)
Q Consensus 208 ~te~~L~~~f~~~G~v~~v~i~~d~~----~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (777)
..+++|.+.|.+||.|..|.|+.+.. ++..+|++||+|.+.++|.+|+..||+..+.|+.|.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 45678999999999999999986544 4588999999999999999999999999999999998765
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.7e-05 Score=67.94 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=59.5
Q ss_pred ceeecCCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNY-----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~-----G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
++|-|-|||..++...|+.|+..+ |.|+.|.+..+. +=|+|+|.+...|-+|...|||.+|.|
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecC
Confidence 789999999999999999999999 999999999884 489999999999999999999999986
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=4.5e-05 Score=65.45 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcc-----CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccc
Q 004041 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (777)
Q Consensus 193 ~~~~~~lfV~nLp~~~te~~L~~~f~~~-----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~ 267 (777)
+...++|-|-|||-+++...|+.|+..+ |.|+.|.++.+- +=|+|+|.+...|.+|.-.|++..|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3447889999999999999999999999 999999998763 34999999999999999999999999999
Q ss_pred cccC
Q 004041 268 CGVT 271 (777)
Q Consensus 268 i~V~ 271 (777)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9865
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00071 Score=57.65 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=70.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcc-----CceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccc
Q 004041 195 KEFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (777)
Q Consensus 195 ~~~~lfV~nLp~~~te~~L~~~f~~~-----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (777)
-..+|.|.|||..+.++.|.-+|..- |.|..|.... .-|+|+|.+...|++.|++ ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 35679999999999999999999872 4788888763 4599999999999999984 46678888888
Q ss_pred cCCC--CCCCCccccccccccc
Q 004041 270 VTPS--QDSDTLFLGNICKTWT 289 (777)
Q Consensus 270 V~~a--~~~~~l~V~nLp~~~t 289 (777)
|.+. .+..+|++.+|++.+.
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 8765 5667899999987754
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.89 E-value=0.0018 Score=54.52 Aligned_cols=54 Identities=17% Similarity=0.444 Sum_probs=45.7
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
..++| ++|..+...||.++|+.||.| .|..+.+- .|||.|.+.+.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999965 45555553 99999999999999999774
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.62 E-value=0.0051 Score=51.76 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=59.5
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC--cccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~--~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
++|.|.+||+.+|++++.+.+.....+....++....+.. .-.-|+|.|.+.+++..-.+.++|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5789999999999999999999999888888776654322 335799999999999999999999998764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.50 E-value=0.011 Score=49.69 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCC--CcceEEEEecCHHHHHHHHHhccCCeeecc
Q 004041 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVINGK 266 (777)
Q Consensus 197 ~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~--~~g~afV~F~s~e~A~~Al~~l~~~~~~gr 266 (777)
++|.|++||+.+|++++.+.+..+..+.-...+..+.+.. .-.-|||.|.+.+++......+++..|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4699999999999999999999998877777766544322 335699999999999999999999877543
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.40 E-value=0.0043 Score=52.36 Aligned_cols=54 Identities=17% Similarity=0.443 Sum_probs=45.9
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
..++| ++|..+...||.++|+.||.| .|..+.+- .|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999944 56655553 99999999999999999875
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.0068 Score=51.68 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=49.8
Q ss_pred cceeecCCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNY-----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~-----G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.++|.|.|||..+.++.|.-+|++- |.|..|.... +-|+|+|.+...|++.+++ ..+.|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 3789999999999999999999882 6788888764 3899999999999998763 2344543
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.24 E-value=0.012 Score=51.74 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=51.7
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g 442 (777)
.+.|.|-++|... ...|..+|++||.|+....... ..+..|.|.+..+|++||. .||..|.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 3778888999874 6778889999999998887322 4599999999999999987 79999975
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.0068 Score=51.92 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=54.2
Q ss_pred ceeecCCCCCCC-C----HHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 374 KTVFVDGLPASW-D----EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 374 ~~l~V~nLp~~~-t----~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
++|+|.||+..+ . ++.++++|..|+.+....+.+.- .-..|.|.+.++|.+|-..||+..|.|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCc
Confidence 789999998764 2 25789999999998887777653 2689999999999999999999999974
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.02 E-value=0.0071 Score=51.79 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=61.1
Q ss_pred cceEEEeCCCCCC-C----HHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeecccccc
Q 004041 196 EFEVFVGGLDKDV-V----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (777)
Q Consensus 196 ~~~lfV~nLp~~~-t----e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (777)
..+|+|.||+..+ + ...++.+|..|+++....+++. -.-..|.|.+.++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998754 2 3678999999999988887753 224799999999999999999999999999988
Q ss_pred CCCC
Q 004041 271 TPSQ 274 (777)
Q Consensus 271 ~~a~ 274 (777)
-.++
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7765
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.98 E-value=0.012 Score=49.52 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=43.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc
Q 004041 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (777)
.++| ++|..+...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999954 46666542 59999999999999999763
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.56 E-value=0.013 Score=49.48 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=43.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc
Q 004041 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (777)
Q Consensus 199 lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (777)
||+-++|..+...||.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999994 446666542 59999999999999999764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.24 E-value=0.048 Score=48.02 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=55.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeec-cccccCCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQCGVTPS 273 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-r~i~V~~a 273 (777)
..-|.|-++|... ...|..+|.+||.|++.... ....+..|.|.+..+|++||. .|+..|.+ -.|-|.++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5568899999885 66788899999999988862 134689999999999999999 48888864 44555544
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.04 E-value=0.035 Score=46.93 Aligned_cols=71 Identities=7% Similarity=0.064 Sum_probs=51.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCC--CcceEEEEecCHHHHHHHHHhccCCeeecc
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVINGK 266 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~--~~g~afV~F~s~e~A~~Al~~l~~~~~~gr 266 (777)
..+|.|+.||+.+|++++.+.+..+-.+.-...+..+.+.+ .-.-|||.|.+.++.......+++..|.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45699999999999999988887765543333332222211 224599999999999999999999877543
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.49 E-value=0.032 Score=47.18 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=54.0
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC--cccEEEEEeccHHHHHHHHHHhCCCeeCCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~--~kg~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (777)
+.+|.|+.||+.+|++++.+.+...=.+....++....+-. .-.-|+|.|.+.+++..-.+.++|..|.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 46899999999999999998887765554444443332211 224689999999999999999999998764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.93 E-value=0.055 Score=59.45 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=51.2
Q ss_pred chhhHHHHhcCCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHh
Q 004041 184 HHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (777)
Q Consensus 184 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~ 257 (777)
..+...+++....++|+|. +|...++.+|.++|++||+|..+.+..+. ..||.|+|.+.+++..++..
T Consensus 41 ~~~~~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 41 FSEMQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp CHHHHHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3445566677778899997 79999999999999999999999988542 37999999999999987764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.12 E-value=0.17 Score=45.08 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=51.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhccCceeEEE-EeeC--------CCCC-----CCcceEEEEecCHHHHHHHHHhccCC
Q 004041 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVR-LMMN--------PQTK-----KNKGFAFLRFATVEQARQAVTELKNP 261 (777)
Q Consensus 196 ~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~-i~~d--------~~~g-----~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (777)
...|.|-+.|...+ ..|...|++||.|++-. +... .... ....+..|+|.+..+|.+||. .|+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44578888866554 56678899999987622 1110 0001 124577999999999999999 5999
Q ss_pred eeeccccccCCC
Q 004041 262 VINGKQCGVTPS 273 (777)
Q Consensus 262 ~~~gr~i~V~~a 273 (777)
+|.|.-|-|.++
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 998876666554
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.08 E-value=0.17 Score=45.12 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=47.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEE-EEEeecC--------CC----C-CcccEEEEEeccHHHHHHHHHHhCCCe
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNM--------PS----A-KRKDFGFVTFDTHDAAVTCAKSINNAE 439 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~-v~i~~~~--------~~----g-~~kg~afV~F~~~~~A~~A~~~l~g~~ 439 (777)
.-|.|-+.|.... ..|.+.|++||.|.. +.+.... .. . ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577778876544 557788999999866 2221100 00 0 125689999999999999987 89999
Q ss_pred eCCC
Q 004041 440 LGEG 443 (777)
Q Consensus 440 ~~g~ 443 (777)
|.|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9873
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.61 E-value=0.1 Score=57.39 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=41.1
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHH
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~ 433 (777)
+.|||. ++..+++.+|.++|++||.|..+.+-.+. ..||.|+|.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 788997 78899999999999999999999887653 3699999999999887753
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.68 E-value=4.2 Score=45.42 Aligned_cols=56 Identities=16% Similarity=0.409 Sum_probs=45.6
Q ss_pred cceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCC
Q 004041 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (777)
Q Consensus 373 ~~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g 437 (777)
...++|+ +|..+...+|.++|+.||.| .|..+.+. .|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3566666 89999999999999999955 55554442 899999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.92 E-value=12 Score=41.76 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=42.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhcc
Q 004041 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (777)
Q Consensus 198 ~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (777)
.++|+ +|..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 45554 99999999999999999953 4554432 359999999999999999875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.87 E-value=47 Score=26.97 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=46.4
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhC
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~ 436 (777)
+-|.|-|+|..+-..++.-.....|---.|+.+. |-|+|.|.+.++-.-||..|-
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 5677899999999888888888888877888763 489999999999999998763
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=45.42 E-value=59 Score=26.39 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhccCceeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhc
Q 004041 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (777)
Q Consensus 194 ~~~~~lfV~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l 258 (777)
...+-|.|-|||..+-..++.-.....|--..|..+ .|.|.|.|.+.++...|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 346778999999999999888888888876667665 345999999999999999876
No 405
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.23 E-value=16 Score=31.17 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=4.2
Q ss_pred CCCcccccCCCCCccc
Q 004041 1 MPPRTVKRGAAGPRRT 16 (777)
Q Consensus 1 ~~~~~~k~~~~~~~~~ 16 (777)
|||+.++..+.+++.+
T Consensus 1 m~pk~~~~~k~~~~~~ 16 (108)
T 3iz6_V 1 MAPKKDKAPPPSSKPA 16 (108)
T ss_dssp --------CCCCCCCC
T ss_pred CCCcccccCHHHHHHH
Confidence 9999777766555443
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.03 E-value=1.6e+02 Score=24.17 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=35.2
Q ss_pred eeEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHhccCCeeeccccccCCCCCCCCcccccccccccHHHHHHHHh
Q 004041 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (777)
Q Consensus 223 v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (777)
|..|.+.. ...||.||++...++...++....+. +-||++ .++.+++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 45555442 37999999999999888888765443 233443 567777777664
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=29.44 E-value=12 Score=42.73 Aligned_cols=10 Identities=10% Similarity=0.517 Sum_probs=4.3
Q ss_pred CCcceEEEEe
Q 004041 236 KNKGFAFLRF 245 (777)
Q Consensus 236 ~~~g~afV~F 245 (777)
+++-.-||.|
T Consensus 399 ~sr~vQFl~F 408 (649)
T 3tj1_A 399 YTRSIQYIMF 408 (649)
T ss_dssp SCSSTTHHHH
T ss_pred cCccHHHHHH
Confidence 3343444444
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.72 E-value=1.5e+02 Score=22.91 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=33.6
Q ss_pred CCHHHHHHHhhccC-----CeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHHhCCCeeCCCcce
Q 004041 385 WDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (777)
Q Consensus 385 ~t~~dL~~~F~~~G-----~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (777)
+...+|..++..-+ .|-.|.|..+ |.||+-.... |..++..|++..+.+....
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~ 70 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLK 70 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEE
Confidence 55566666666543 4667888655 8899886654 6677888999888875443
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.02 E-value=1.6e+02 Score=22.13 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=41.6
Q ss_pred ceeecCCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCcccEEEEEeccHHHHHHHHHH
Q 004041 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (777)
Q Consensus 374 ~~l~V~nLp~~~t~~dL~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~A~~A~~~ 434 (777)
.++.|.++.-......|...+.+ -.|..+.+-.. .+.+.|+|.+.+....||..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 56889999888888999999998 77877776433 45788998866667777764
Done!