Query 004042
Match_columns 777
No_of_seqs 358 out of 3358
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 2.3E-85 7.8E-90 785.4 58.2 683 30-776 1-727 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1.6E-49 5.4E-54 431.1 39.9 368 29-423 3-380 (389)
3 4f11_A Gamma-aminobutyric acid 100.0 2.8E-49 9.6E-54 437.0 37.6 390 26-456 9-426 (433)
4 4gpa_A Glutamate receptor 4; P 100.0 1.5E-47 5.1E-52 417.3 42.2 372 28-425 2-380 (389)
5 3om0_A Glutamate receptor, ion 100.0 3.9E-48 1.3E-52 422.0 36.4 368 30-423 3-381 (393)
6 3h6g_A Glutamate receptor, ion 100.0 9.5E-48 3.3E-52 419.3 37.0 369 29-423 2-383 (395)
7 1jdp_A NPR-C, atrial natriuret 100.0 1.2E-46 4.2E-51 416.7 40.2 359 27-419 5-397 (441)
8 3hsy_A Glutamate receptor 2; l 100.0 3.8E-47 1.3E-51 411.1 35.0 364 30-422 1-373 (376)
9 1dp4_A Atrial natriuretic pept 100.0 6E-47 2.1E-51 418.8 35.9 382 30-459 1-423 (435)
10 3saj_A Glutamate receptor 1; r 100.0 2.4E-46 8.3E-51 406.2 34.6 365 27-425 6-379 (384)
11 2e4u_A Metabotropic glutamate 100.0 4.1E-45 1.4E-49 415.1 42.2 387 28-459 11-485 (555)
12 3qek_A NMDA glutamate receptor 100.0 1.6E-45 5.6E-50 400.0 35.4 338 28-416 2-369 (384)
13 3sm9_A Mglur3, metabotropic gl 100.0 7.7E-45 2.6E-49 403.8 38.6 382 27-451 9-478 (479)
14 3ks9_A Mglur1, metabotropic gl 100.0 1E-43 3.6E-48 396.5 38.6 370 26-416 12-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 1.9E-44 6.7E-49 401.8 26.9 370 27-415 12-467 (481)
16 3h5l_A Putative branched-chain 100.0 1.8E-40 6.2E-45 364.8 27.0 348 27-411 10-393 (419)
17 3i45_A Twin-arginine transloca 100.0 2.8E-39 9.5E-44 351.5 34.8 356 29-424 3-367 (387)
18 4f06_A Extracellular ligand-bi 100.0 1.9E-39 6.5E-44 350.2 32.5 341 28-408 2-352 (371)
19 3ipc_A ABC transporter, substr 100.0 1.7E-38 5.8E-43 341.3 29.9 344 30-417 1-352 (356)
20 3td9_A Branched chain amino ac 100.0 4.2E-38 1.4E-42 339.6 31.6 341 29-418 14-364 (366)
21 4gnr_A ABC transporter substra 100.0 2.2E-38 7.4E-43 340.0 28.9 337 28-413 4-350 (353)
22 3hut_A Putative branched-chain 100.0 8.3E-38 2.8E-42 336.2 33.1 344 29-416 2-353 (358)
23 3i09_A Periplasmic branched-ch 100.0 2.6E-37 8.9E-42 334.5 33.9 334 29-407 2-342 (375)
24 1usg_A Leucine-specific bindin 100.0 1.4E-37 4.7E-42 332.8 31.4 339 30-411 1-345 (346)
25 3qel_B Glutamate [NMDA] recept 100.0 3.8E-38 1.3E-42 337.1 26.8 338 30-421 3-355 (364)
26 3lkb_A Probable branched-chain 100.0 3.8E-38 1.3E-42 343.2 27.0 351 28-419 4-377 (392)
27 3n0w_A ABC branched chain amin 100.0 4.1E-37 1.4E-41 333.4 31.0 335 29-407 4-346 (379)
28 4evq_A Putative ABC transporte 100.0 7.2E-37 2.5E-41 331.1 32.5 345 28-417 13-364 (375)
29 3eaf_A ABC transporter, substr 100.0 5.4E-37 1.9E-41 333.8 31.5 347 29-417 2-372 (391)
30 4eyg_A Twin-arginine transloca 100.0 1.1E-36 3.9E-41 328.6 32.0 346 28-416 3-359 (368)
31 3lop_A Substrate binding perip 100.0 9.2E-37 3.1E-41 328.7 29.4 337 29-409 3-354 (364)
32 3n0x_A Possible substrate bind 100.0 5.9E-37 2E-41 331.3 27.7 330 30-405 3-346 (374)
33 3sg0_A Extracellular ligand-bi 100.0 8.6E-36 2.9E-40 324.0 22.5 343 28-411 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 2.2E-33 7.4E-38 304.7 34.6 346 29-414 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 3.3E-34 1.1E-38 308.5 25.9 341 28-411 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 4.2E-28 1.5E-32 253.3 22.7 307 33-411 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 5.2E-28 1.8E-32 255.6 21.0 312 32-413 3-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 1.3E-21 4.4E-26 205.3 12.9 220 463-776 11-255 (312)
39 1pb7_A N-methyl-D-aspartate re 99.8 1.1E-20 3.8E-25 195.8 10.4 198 465-776 41-254 (292)
40 2rc8_A Glutamate [NMDA] recept 99.8 2.1E-20 7.2E-25 194.1 12.3 180 489-776 67-256 (294)
41 2a5s_A N-methyl-D-aspartate re 99.8 2.8E-20 9.5E-25 192.1 11.9 204 462-776 26-247 (284)
42 3g3k_A Glutamate receptor, ion 99.8 4.5E-20 1.5E-24 188.0 12.7 195 464-776 3-221 (259)
43 4h5g_A Amino acid ABC superfam 99.8 6.7E-20 2.3E-24 184.7 13.5 189 464-776 11-204 (243)
44 4gvo_A LMO2349 protein; struct 99.8 1.2E-19 4.1E-24 182.9 12.3 191 462-776 6-202 (243)
45 3kzg_A Arginine 3RD transport 99.8 1E-18 3.4E-23 175.3 15.6 185 465-776 3-197 (237)
46 4f3p_A Glutamine-binding perip 99.8 3E-18 1E-22 173.2 15.9 188 462-776 21-210 (249)
47 4dz1_A DALS D-alanine transpor 99.8 1.1E-17 3.8E-22 170.1 17.6 191 463-776 27-222 (259)
48 3k4u_A Binding component of AB 99.8 4.3E-18 1.5E-22 171.7 13.9 190 464-776 4-195 (245)
49 3kbr_A Cyclohexadienyl dehydra 99.8 2.1E-18 7.2E-23 173.1 11.5 191 463-776 13-205 (239)
50 1mqi_A Glutamate receptor 2; G 99.8 4.2E-18 1.4E-22 173.8 13.8 195 464-776 3-224 (263)
51 3del_B Arginine binding protei 99.8 7.6E-18 2.6E-22 169.4 14.9 184 464-776 10-199 (242)
52 3mpk_A Virulence sensor protei 99.7 1.8E-17 6.3E-22 169.4 16.5 189 462-776 29-220 (267)
53 3hv1_A Polar amino acid ABC up 99.7 8.5E-18 2.9E-22 172.0 13.2 189 463-776 19-215 (268)
54 3tql_A Arginine-binding protei 99.7 1.9E-17 6.4E-22 164.5 15.0 182 465-771 2-185 (227)
55 3i6v_A Periplasmic His/Glu/Gln 99.7 7.8E-18 2.7E-22 168.2 11.8 179 464-776 4-184 (232)
56 1ii5_A SLR1257 protein; membra 99.7 3E-17 1E-21 163.8 15.7 187 464-776 3-194 (233)
57 3h7m_A Sensor protein; histidi 99.7 4.1E-17 1.4E-21 162.9 16.1 187 463-776 9-197 (234)
58 2v3u_A Glutamate receptor delt 99.7 2.9E-17 1E-21 167.6 14.8 198 463-776 1-226 (265)
59 1wdn_A GLNBP, glutamine bindin 99.7 5E-17 1.7E-21 161.2 15.4 185 465-776 3-189 (226)
60 1lst_A Lysine, arginine, ornit 99.7 5.3E-17 1.8E-21 162.8 14.5 188 464-776 3-199 (239)
61 4eq9_A ABC transporter substra 99.7 5.9E-17 2E-21 163.2 12.6 188 464-776 7-202 (246)
62 2y7i_A STM4351; arginine-bindi 99.7 1.6E-16 5.5E-21 158.0 15.6 185 464-776 5-195 (229)
63 2iee_A ORF2, probable ABC tran 99.7 3.7E-17 1.3E-21 167.5 8.4 188 462-776 18-213 (271)
64 2q88_A EHUB, putative ABC tran 99.7 2.7E-16 9.1E-21 159.6 14.0 189 464-776 12-207 (257)
65 3qax_A Probable ABC transporte 99.7 4.1E-16 1.4E-20 159.2 14.8 185 464-776 30-220 (268)
66 2pvu_A ARTJ; basic amino acid 99.7 4.8E-16 1.6E-20 159.3 13.9 187 463-776 40-230 (272)
67 2pyy_A Ionotropic glutamate re 99.7 3.4E-16 1.2E-20 155.4 11.7 186 465-776 3-190 (228)
68 2yjp_A Putative ABC transporte 99.6 4.7E-16 1.6E-20 161.1 12.8 186 464-776 54-243 (291)
69 1xt8_A Putative amino-acid tra 99.6 4.8E-16 1.6E-20 161.1 12.1 186 464-776 43-232 (292)
70 2vha_A Periplasmic binding tra 99.6 1.1E-15 3.7E-20 158.0 14.4 188 464-776 16-215 (287)
71 4i62_A Amino acid ABC transpor 99.6 9.2E-16 3.2E-20 156.7 13.1 188 464-776 38-231 (269)
72 2yln_A Putative ABC transporte 99.6 9E-16 3.1E-20 158.2 13.0 184 464-776 56-244 (283)
73 2v25_A Major cell-binding fact 99.5 8.3E-15 2.8E-19 148.6 10.2 187 464-776 37-228 (259)
74 2ozz_A Hypothetical protein YH 98.6 6.1E-08 2.1E-12 93.4 6.9 133 488-751 28-169 (231)
75 2h3h_A Sugar ABC transporter, 98.4 1.6E-05 5.5E-10 82.4 21.6 208 32-259 2-216 (313)
76 3ksm_A ABC-type sugar transpor 98.4 1.6E-05 5.6E-10 80.5 19.8 209 32-259 1-221 (276)
77 2qh8_A Uncharacterized protein 98.4 1.5E-05 5.3E-10 82.0 19.2 189 29-233 6-203 (302)
78 3brq_A HTH-type transcriptiona 98.3 7.7E-06 2.6E-10 83.9 16.3 211 29-259 17-236 (296)
79 2rjo_A Twin-arginine transloca 98.3 4E-05 1.4E-09 80.1 21.1 211 31-257 5-229 (332)
80 2qu7_A Putative transcriptiona 98.3 5.2E-06 1.8E-10 84.9 13.8 208 29-258 6-222 (288)
81 3brs_A Periplasmic binding pro 98.3 4.4E-05 1.5E-09 77.9 20.6 209 31-258 5-223 (289)
82 3d02_A Putative LACI-type tran 98.3 6.9E-05 2.4E-09 77.0 21.7 210 30-258 3-222 (303)
83 3rot_A ABC sugar transporter, 98.3 2.5E-05 8.6E-10 80.2 17.9 205 31-251 3-215 (297)
84 1tjy_A Sugar transport protein 98.2 9.3E-05 3.2E-09 76.7 22.0 205 33-258 5-221 (316)
85 1dbq_A Purine repressor; trans 98.2 4E-05 1.4E-09 78.2 18.9 210 30-258 6-222 (289)
86 3lkv_A Uncharacterized conserv 98.2 5.1E-05 1.7E-09 78.0 19.4 205 28-248 5-221 (302)
87 3n5l_A Binding protein compone 98.2 2.9E-06 9.8E-11 87.7 9.3 181 465-776 4-209 (310)
88 2x7x_A Sensor protein; transfe 98.2 7.4E-05 2.5E-09 77.8 20.0 210 30-259 5-222 (325)
89 3o1i_D Periplasmic protein TOR 98.2 3.1E-05 1.1E-09 79.7 16.9 205 30-249 4-218 (304)
90 2fn9_A Ribose ABC transporter, 98.2 7.7E-05 2.6E-09 76.1 19.8 197 32-248 3-215 (290)
91 3lft_A Uncharacterized protein 98.2 0.00018 6.1E-09 73.7 21.7 200 31-248 2-210 (295)
92 3gbv_A Putative LACI-family tr 98.2 7.1E-05 2.4E-09 76.9 18.5 213 29-259 6-232 (304)
93 2fvy_A D-galactose-binding per 98.1 0.00012 4E-09 75.5 20.0 204 32-247 3-226 (309)
94 3p7i_A PHND, subunit of alkylp 98.1 6.9E-06 2.4E-10 85.0 10.3 183 463-776 12-218 (321)
95 3c3k_A Alanine racemase; struc 98.1 0.00011 3.9E-09 74.7 19.3 199 30-252 7-212 (285)
96 3l49_A ABC sugar (ribose) tran 98.1 8.7E-05 3E-09 75.7 18.5 207 31-258 5-223 (291)
97 2h0a_A TTHA0807, transcription 98.1 2.2E-05 7.4E-10 79.6 13.5 202 33-256 1-212 (276)
98 2vk2_A YTFQ, ABC transporter p 98.1 0.00017 5.8E-09 74.2 20.3 211 31-258 2-226 (306)
99 2iks_A DNA-binding transcripti 98.1 0.00014 4.9E-09 74.3 19.3 209 30-259 19-233 (293)
100 3h75_A Periplasmic sugar-bindi 98.1 0.00023 8E-09 74.8 21.4 214 31-259 3-241 (350)
101 3o74_A Fructose transport syst 98.1 8.9E-05 3E-09 74.8 17.5 207 32-259 3-215 (272)
102 2fep_A Catabolite control prot 98.1 0.0001 3.5E-09 75.2 17.9 210 29-258 14-230 (289)
103 3g1w_A Sugar ABC transporter; 98.1 0.00029 1E-08 72.3 21.3 210 32-259 5-221 (305)
104 2ioy_A Periplasmic sugar-bindi 98.0 0.00038 1.3E-08 70.6 21.2 205 33-259 3-216 (283)
105 3l6u_A ABC-type sugar transpor 98.0 0.00024 8.1E-09 72.5 19.7 208 29-258 6-227 (293)
106 2o20_A Catabolite control prot 98.0 0.00011 3.9E-09 76.6 17.4 208 30-257 62-273 (332)
107 3bbl_A Regulatory protein of L 98.0 7.9E-05 2.7E-09 76.0 15.7 209 31-259 4-224 (287)
108 2rgy_A Transcriptional regulat 98.0 6.2E-05 2.1E-09 76.9 14.9 209 30-258 7-224 (290)
109 3dbi_A Sugar-binding transcrip 98.0 9.6E-05 3.3E-09 77.4 16.5 211 30-259 60-278 (338)
110 3d8u_A PURR transcriptional re 98.0 0.00017 5.8E-09 72.8 17.8 206 32-257 4-215 (275)
111 8abp_A L-arabinose-binding pro 98.0 0.00033 1.1E-08 72.0 20.2 214 31-259 2-232 (306)
112 2hsg_A Glucose-resistance amyl 98.0 8E-05 2.7E-09 77.8 15.4 210 30-259 59-275 (332)
113 3k4h_A Putative transcriptiona 98.0 0.00013 4.5E-09 74.4 16.6 210 30-258 7-227 (292)
114 3clk_A Transcription regulator 98.0 5.2E-05 1.8E-09 77.4 13.5 208 30-257 7-219 (290)
115 3egc_A Putative ribose operon 97.9 8.3E-05 2.8E-09 76.0 13.9 210 30-259 7-222 (291)
116 1jx6_A LUXP protein; protein-l 97.9 0.00031 1.1E-08 73.5 18.5 208 28-248 40-258 (342)
117 3gyb_A Transcriptional regulat 97.9 7.6E-05 2.6E-09 75.7 12.7 205 30-259 4-212 (280)
118 3ctp_A Periplasmic binding pro 97.9 0.00011 3.8E-09 76.6 14.1 199 30-254 59-261 (330)
119 1qpz_A PURA, protein (purine n 97.9 0.00053 1.8E-08 71.7 18.9 209 31-258 58-273 (340)
120 3uif_A Sulfonate ABC transport 97.9 0.00011 3.9E-09 77.2 13.5 137 497-752 35-179 (348)
121 3jy6_A Transcriptional regulat 97.8 0.00071 2.4E-08 68.3 18.8 204 29-256 5-213 (276)
122 3hcw_A Maltose operon transcri 97.8 0.0012 4.1E-08 67.3 20.7 210 29-259 5-228 (295)
123 3gv0_A Transcriptional regulat 97.8 0.00098 3.4E-08 67.7 19.5 203 30-252 7-216 (288)
124 3tb6_A Arabinose metabolism tr 97.8 0.00026 8.9E-09 72.4 14.5 208 32-256 16-233 (298)
125 3m9w_A D-xylose-binding peripl 97.8 0.0011 3.7E-08 68.3 19.3 198 32-249 3-213 (313)
126 3g85_A Transcriptional regulat 97.8 0.00022 7.6E-09 72.6 13.8 207 29-257 9-222 (289)
127 3k9c_A Transcriptional regulat 97.8 0.0011 3.7E-08 67.4 18.6 206 30-258 11-220 (289)
128 3qk7_A Transcriptional regulat 97.7 0.00041 1.4E-08 70.9 14.9 209 30-259 5-223 (294)
129 3kke_A LACI family transcripti 97.7 0.00045 1.5E-08 70.9 15.3 208 29-258 13-232 (303)
130 2x26_A Periplasmic aliphatic s 97.7 0.00018 6.3E-09 74.0 12.3 77 681-764 96-176 (308)
131 3kjx_A Transcriptional regulat 97.7 0.00052 1.8E-08 71.9 15.8 207 30-256 67-279 (344)
132 3ksx_A Nitrate transport prote 97.7 0.00044 1.5E-08 71.8 14.9 70 681-756 122-195 (324)
133 3ix1_A N-formyl-4-amino-5-amin 97.7 0.0001 3.5E-09 75.8 9.5 78 488-573 15-96 (302)
134 3cs3_A Sugar-binding transcrip 97.6 0.0027 9.1E-08 64.0 19.5 198 30-257 7-210 (277)
135 3bil_A Probable LACI-family tr 97.6 0.0014 4.7E-08 68.8 17.8 208 30-259 65-277 (348)
136 1byk_A Protein (trehalose oper 97.6 0.0027 9.3E-08 63.0 18.9 198 33-259 4-205 (255)
137 2dri_A D-ribose-binding protei 97.6 0.0069 2.3E-07 60.7 21.6 204 33-258 3-214 (271)
138 3e61_A Putative transcriptiona 97.5 0.00071 2.4E-08 68.3 13.5 199 30-256 7-209 (277)
139 3qsl_A Putative exported prote 97.5 0.00047 1.6E-08 72.1 12.6 142 502-763 59-210 (346)
140 3uug_A Multiple sugar-binding 97.5 0.0024 8.1E-08 66.3 17.9 205 31-252 3-232 (330)
141 1gud_A ALBP, D-allose-binding 97.5 0.011 3.8E-07 59.8 22.2 213 33-259 3-227 (288)
142 3hs3_A Ribose operon repressor 97.5 0.0014 4.9E-08 66.1 15.4 195 29-254 8-208 (277)
143 3huu_A Transcription regulator 97.5 0.0018 6.1E-08 66.4 15.9 206 30-259 21-238 (305)
144 4ddd_A Immunogenic protein; ss 97.5 0.0004 1.4E-08 72.1 10.9 151 465-748 32-204 (327)
145 3e3m_A Transcriptional regulat 97.5 0.0045 1.6E-07 64.9 19.2 205 31-254 70-280 (355)
146 4fe7_A Xylose operon regulator 97.5 0.0042 1.5E-07 66.7 19.1 210 28-258 22-238 (412)
147 3un6_A Hypothetical protein sa 97.5 0.00022 7.5E-09 74.7 8.7 71 681-758 144-221 (341)
148 2fqx_A Membrane lipoprotein TM 97.5 0.0079 2.7E-07 61.9 20.3 207 30-257 3-220 (318)
149 3jvd_A Transcriptional regulat 97.4 0.0061 2.1E-07 63.3 19.1 199 30-258 63-266 (333)
150 3h5o_A Transcriptional regulat 97.4 0.0041 1.4E-07 64.8 17.8 204 30-254 61-269 (339)
151 3s99_A Basic membrane lipoprot 97.4 0.014 4.7E-07 60.8 21.3 202 27-248 22-230 (356)
152 2k1e_A Water soluble analogue 97.3 0.00036 1.2E-08 58.3 5.8 79 595-677 17-97 (103)
153 1jye_A Lactose operon represso 97.2 0.014 4.9E-07 60.9 19.5 201 30-254 60-268 (349)
154 2hqb_A Transcriptional activat 97.2 0.037 1.3E-06 56.1 21.5 196 30-247 4-204 (296)
155 3miz_A Putative transcriptiona 97.2 0.00046 1.6E-08 70.7 7.0 205 30-252 12-225 (301)
156 2ih3_C Voltage-gated potassium 97.1 0.0014 4.7E-08 56.6 7.8 76 598-677 41-118 (122)
157 2a9h_A Voltage-gated potassium 96.9 0.0029 9.9E-08 56.9 8.4 76 598-677 64-141 (155)
158 3qi7_A Putative transcriptiona 96.7 0.042 1.4E-06 56.6 16.6 217 29-251 10-252 (371)
159 3h5t_A Transcriptional regulat 96.7 0.007 2.4E-07 63.8 11.0 212 30-257 67-302 (366)
160 3eff_K Voltage-gated potassium 96.6 0.0047 1.6E-07 54.8 7.8 73 599-675 21-95 (139)
161 2x7q_A Ca3427, possible thiami 96.6 0.0076 2.6E-07 62.2 10.1 77 680-765 110-195 (321)
162 3ixl_A Amdase, arylmalonate de 96.5 0.041 1.4E-06 53.7 14.0 130 87-244 57-201 (240)
163 2f5x_A BUGD; periplasmic bindi 96.4 0.011 3.8E-07 60.3 10.2 78 680-763 121-208 (312)
164 2dvz_A BUGE, putative exported 96.4 0.0089 3.1E-07 61.1 8.9 77 680-762 125-211 (314)
165 2qpq_A Protein BUG27; alpha/be 96.3 0.015 5E-07 59.2 10.3 78 680-763 112-199 (301)
166 4h33_A LMO2059 protein; bilaye 96.3 0.0099 3.4E-07 52.3 7.6 56 621-676 42-99 (137)
167 3ldc_A Calcium-gated potassium 95.9 0.032 1.1E-06 44.0 8.0 52 622-673 28-81 (82)
168 1us5_A Putative GLUR0 ligand b 95.8 0.03 1E-06 57.3 10.0 61 681-747 122-188 (314)
169 2g29_A Nitrate transport prote 95.8 0.023 7.9E-07 60.9 9.0 65 686-757 151-222 (417)
170 3ouf_A Potassium channel prote 95.6 0.029 9.8E-07 46.0 6.9 58 622-679 32-91 (97)
171 1p7b_A Integral membrane chann 95.4 0.042 1.4E-06 56.0 9.0 59 620-678 94-154 (333)
172 2q67_A Potassium channel prote 95.2 0.053 1.8E-06 45.9 7.6 55 622-676 49-105 (114)
173 4gx0_A TRKA domain protein; me 95.2 0.086 3E-06 59.0 11.4 126 622-752 51-184 (565)
174 1zbm_A Hypothetical protein AF 95.1 0.023 7.8E-07 57.2 6.0 57 686-751 99-157 (280)
175 2zzv_A ABC transporter, solute 95.0 0.12 4E-06 54.2 11.0 59 680-750 164-222 (361)
176 1xl4_A Inward rectifier potass 94.8 0.069 2.4E-06 53.8 8.4 59 619-677 79-139 (301)
177 4esw_A Pyrimidine biosynthesis 94.8 0.15 5.1E-06 52.9 11.2 65 680-751 101-168 (342)
178 1orq_C Potassium channel; volt 94.3 0.12 3.9E-06 50.0 8.5 73 599-675 146-220 (223)
179 3pjs_K KCSA, voltage-gated pot 94.2 0.0036 1.2E-07 57.4 -2.5 57 619-675 64-122 (166)
180 1lnq_A MTHK channels, potassiu 94.1 0.036 1.2E-06 57.5 4.5 58 622-679 45-104 (336)
181 3vou_A ION transport 2 domain 93.9 0.1 3.5E-06 46.5 6.7 52 622-673 52-105 (148)
182 2i49_A Bicarbonate transporter 93.9 0.21 7.2E-06 53.5 10.2 68 685-757 153-230 (429)
183 2xed_A Putative maleate isomer 93.7 0.76 2.6E-05 45.6 13.3 127 88-242 82-227 (273)
184 2qks_A KIR3.1-prokaryotic KIR 93.6 0.2 6.8E-06 50.8 8.9 57 622-678 78-136 (321)
185 2pfy_A Putative exported prote 93.0 0.45 1.5E-05 48.2 10.6 58 680-749 129-186 (301)
186 2pfz_A Putative exported prote 93.0 0.43 1.5E-05 48.3 10.5 58 680-749 128-185 (301)
187 3beh_A MLL3241 protein; transm 92.5 0.17 5.7E-06 52.8 6.6 76 597-676 140-217 (355)
188 2hzl_A Trap-T family sorbitol/ 91.3 0.39 1.3E-05 50.2 7.9 59 680-751 163-221 (365)
189 3jv9_A OXYR, transcriptional r 91.1 3 0.0001 38.8 13.6 69 492-573 17-86 (219)
190 2r9r_B Paddle chimera voltage 90.5 0.4 1.4E-05 52.4 7.3 57 619-675 372-430 (514)
191 2eq5_A 228AA long hypothetical 90.1 2.2 7.4E-05 40.9 11.5 166 31-235 6-186 (228)
192 3r26_A Molybdate-binding perip 90.0 1 3.5E-05 43.6 9.1 70 495-573 22-97 (237)
193 3gzg_A Molybdate-binding perip 89.4 1.6 5.3E-05 42.8 9.9 70 495-573 38-113 (253)
194 2fqx_A Membrane lipoprotein TM 89.4 6.1 0.00021 39.9 14.8 126 33-165 131-264 (318)
195 3s99_A Basic membrane lipoprot 89.3 3.8 0.00013 42.3 13.1 88 33-129 151-238 (356)
196 3ukm_A Potassium channel subfa 89.2 0.5 1.7E-05 46.6 6.0 68 622-689 201-277 (280)
197 3l6g_A Betaine ABC transporter 88.7 1.6 5.6E-05 42.7 9.4 43 493-544 16-58 (256)
198 4ab5_A Transcriptional regulat 88.2 4.5 0.00015 37.7 12.2 84 464-573 7-90 (222)
199 1atg_A MODA, periplasmic molyb 87.6 1 3.4E-05 42.9 7.1 72 493-573 13-90 (231)
200 2de3_A Dibenzothiophene desulf 87.6 0.48 1.6E-05 49.5 5.1 32 727-764 210-241 (365)
201 2xxp_A CPS2A; replication, pep 87.4 0.67 2.3E-05 48.6 6.0 70 680-758 26-101 (398)
202 2q5c_A NTRC family transcripti 86.6 11 0.00039 34.9 13.4 158 32-249 5-162 (196)
203 2dgd_A 223AA long hypothetical 86.5 4.2 0.00014 38.7 10.8 88 152-242 96-190 (223)
204 3sya_A G protein-activated inw 86.5 1.7 5.9E-05 44.1 8.2 60 620-679 89-152 (340)
205 3ho7_A OXYR; beta-alpha-barrel 86.4 3.4 0.00012 39.0 10.2 84 464-573 10-93 (232)
206 1sw5_A Osmoprotection protein 86.3 1.1 3.8E-05 44.5 6.8 73 681-764 124-205 (275)
207 2hpg_A ABC transporter, peripl 86.0 2.2 7.6E-05 43.5 9.0 60 680-750 148-207 (327)
208 3oxn_A Putative transcriptiona 85.7 8.2 0.00028 36.6 12.7 83 464-573 18-101 (241)
209 3tmg_A Glycine betaine, L-prol 85.7 4.2 0.00014 40.4 10.6 41 495-544 32-72 (280)
210 2czl_A Hypothetical protein TT 85.2 1.5 5.1E-05 43.3 7.1 59 685-751 91-150 (272)
211 2hqb_A Transcriptional activat 84.9 11 0.00037 37.5 13.5 121 33-166 128-248 (296)
212 3hn0_A Nitrate transport prote 84.9 1.4 4.7E-05 44.0 6.7 66 688-760 94-164 (283)
213 2xwv_A Sialic acid-binding per 84.0 5 0.00017 40.5 10.5 60 680-750 133-192 (312)
214 2zsk_A PH1733, 226AA long hypo 83.9 8.5 0.00029 36.7 11.5 77 91-196 68-144 (226)
215 3bfj_A 1,3-propanediol oxidore 83.8 5.5 0.00019 41.7 11.0 88 154-243 23-114 (387)
216 2l82_A Designed protein OR32; 83.3 12 0.00043 29.7 9.9 97 141-248 4-104 (162)
217 2rin_A Putative glycine betain 83.1 2.4 8.1E-05 42.7 7.5 63 681-749 104-181 (298)
218 3ox4_A Alcohol dehydrogenase 2 82.8 2 6.9E-05 44.9 7.1 90 153-244 20-111 (383)
219 3spc_A Inward-rectifier K+ cha 81.2 3.4 0.00012 42.0 7.7 60 620-679 92-155 (343)
220 3um7_A Potassium channel subfa 80.9 2.4 8.1E-05 42.5 6.4 54 622-675 115-170 (309)
221 3um7_A Potassium channel subfa 80.6 2.6 8.8E-05 42.2 6.5 54 622-675 224-285 (309)
222 1jfl_A Aspartate racemase; alp 79.2 11 0.00037 35.9 10.4 80 87-195 65-144 (228)
223 1rrm_A Lactaldehyde reductase; 78.2 4.9 0.00017 42.0 8.2 89 154-244 21-111 (386)
224 2hxr_A HTH-type transcriptiona 77.8 25 0.00084 33.0 12.7 70 492-573 43-112 (238)
225 3fzv_A Probable transcriptiona 76.4 24 0.00081 34.8 12.6 83 464-573 94-178 (306)
226 1twy_A ABC transporter, peripl 76.4 15 0.00053 35.8 11.1 70 494-573 42-113 (290)
227 2pju_A Propionate catabolism o 76.0 34 0.0012 32.4 12.5 162 31-249 12-174 (225)
228 1vlj_A NADH-dependent butanol 75.8 7.8 0.00027 40.8 8.9 88 154-243 33-123 (407)
229 2ql3_A Probable transcriptiona 75.1 28 0.00095 31.7 12.0 70 492-573 18-87 (209)
230 3qvl_A Putative hydantoin race 74.1 62 0.0021 31.0 14.2 171 32-242 2-194 (245)
231 4dik_A Flavoprotein; TM0755, e 73.9 13 0.00045 39.0 10.0 92 164-262 265-364 (410)
232 2y7p_A LYSR-type regulatory pr 73.6 34 0.0012 31.7 12.3 70 492-573 21-90 (218)
233 3ukm_A Potassium channel subfa 73.3 6.4 0.00022 38.7 6.9 56 622-677 93-150 (280)
234 2esn_A Probable transcriptiona 73.1 22 0.00075 35.2 11.4 73 492-573 114-186 (310)
235 2fyi_A HTH-type transcriptiona 73.1 53 0.0018 30.4 13.7 85 464-573 13-97 (228)
236 1o2d_A Alcohol dehydrogenase, 72.8 11 0.00039 38.9 9.2 88 153-243 30-120 (371)
237 3uhj_A Probable glycerol dehyd 72.6 5.2 0.00018 41.8 6.5 82 154-241 43-126 (387)
238 3s81_A Putative aspartate race 72.1 5.3 0.00018 39.2 6.0 40 86-126 89-128 (268)
239 2l69_A Rossmann 2X3 fold prote 69.7 28 0.00097 26.8 8.1 65 145-220 57-121 (134)
240 1r9l_A Glycine betaine-binding 69.4 12 0.00043 37.5 8.4 40 496-543 25-64 (309)
241 3k6v_A Solute-binding protein 69.3 14 0.00048 37.9 8.8 69 496-573 59-133 (354)
242 3m9w_A D-xylose-binding peripl 69.1 13 0.00046 37.0 8.7 79 165-248 3-84 (313)
243 3g1w_A Sugar ABC transporter; 66.0 11 0.00039 37.4 7.3 80 165-248 5-87 (305)
244 2gzm_A Glutamate racemase; enz 65.7 22 0.00077 34.7 9.1 38 88-125 57-94 (267)
245 3gbv_A Putative LACI-family tr 65.5 17 0.00059 35.9 8.6 86 161-248 5-95 (304)
246 3fxq_A LYSR type regulator of 65.4 45 0.0015 32.8 11.8 72 492-573 105-176 (305)
247 3dbi_A Sugar-binding transcrip 65.3 19 0.00065 36.4 9.0 85 159-248 56-144 (338)
248 1ixc_A CBNR, LYSR-type regulat 64.9 33 0.0011 33.4 10.5 70 492-573 104-173 (294)
249 2h9b_A HTH-type transcriptiona 64.9 56 0.0019 32.2 12.4 70 492-573 103-172 (312)
250 3ce9_A Glycerol dehydrogenase; 64.7 15 0.00053 37.6 8.1 109 139-260 12-122 (354)
251 2h98_A HTH-type transcriptiona 63.8 76 0.0026 31.3 13.1 69 492-573 103-172 (313)
252 2dwu_A Glutamate racemase; iso 63.6 54 0.0018 32.1 11.5 40 86-125 59-98 (276)
253 3h75_A Periplasmic sugar-bindi 63.5 16 0.00053 37.3 7.9 81 163-248 2-87 (350)
254 2fp4_A Succinyl-COA ligase [GD 63.5 1.2E+02 0.004 30.1 14.1 144 81-245 80-234 (305)
255 1jq5_A Glycerol dehydrogenase; 63.5 15 0.00051 38.0 7.8 83 155-242 23-107 (370)
256 1mkz_A Molybdenum cofactor bio 63.3 26 0.00088 31.6 8.3 65 164-232 10-78 (172)
257 3hl0_A Maleylacetate reductase 63.1 12 0.00042 38.3 6.9 83 154-242 24-108 (353)
258 1i6a_A OXYR, hydrogen peroxide 62.6 20 0.00069 33.1 8.0 83 465-573 5-87 (219)
259 2oho_A Glutamate racemase; iso 62.2 24 0.00084 34.5 8.7 38 88-125 66-103 (273)
260 3rvy_A ION transport protein; 62.1 7.3 0.00025 38.7 4.9 58 620-677 178-243 (285)
261 3l49_A ABC sugar (ribose) tran 62.1 22 0.00075 34.8 8.6 80 164-248 5-87 (291)
262 3muq_A Uncharacterized conserv 62.0 39 0.0013 32.3 9.8 74 491-573 18-94 (237)
263 1al3_A Cys regulon transcripti 60.3 1.2E+02 0.0042 29.8 14.1 71 492-573 106-176 (324)
264 1xs5_A 29 kDa protein, membran 59.9 19 0.00065 34.6 7.2 36 498-541 21-56 (241)
265 3fni_A Putative diflavin flavo 59.6 46 0.0016 29.3 9.3 85 165-258 5-95 (159)
266 3jy6_A Transcriptional regulat 59.5 27 0.00092 33.9 8.6 79 163-248 6-86 (276)
267 3jzd_A Iron-containing alcohol 59.4 12 0.00041 38.5 6.0 96 153-259 25-122 (358)
268 8abp_A L-arabinose-binding pro 57.5 28 0.00096 34.3 8.5 78 165-248 3-83 (306)
269 3l6u_A ABC-type sugar transpor 57.2 25 0.00085 34.5 8.0 83 161-248 5-90 (293)
270 1ccw_A Protein (glutamate muta 57.1 51 0.0018 28.2 8.9 85 166-259 5-93 (137)
271 1tjy_A Sugar transport protein 56.8 15 0.00051 36.8 6.3 80 165-248 4-86 (316)
272 3tb6_A Arabinose metabolism tr 55.8 37 0.0013 33.2 9.0 79 165-248 16-100 (298)
273 2yxb_A Coenzyme B12-dependent 55.5 76 0.0026 28.0 10.0 86 164-258 18-107 (161)
274 3o74_A Fructose transport syst 54.8 17 0.00057 35.3 6.1 79 165-248 3-83 (272)
275 3d02_A Putative LACI-type tran 54.7 29 0.00098 34.2 8.0 80 165-248 5-87 (303)
276 3ist_A Glutamate racemase; str 54.6 48 0.0017 32.3 9.2 38 88-125 59-96 (269)
277 3cij_A UPF0100 protein AF_0094 54.5 37 0.0013 33.5 8.7 70 495-573 20-95 (295)
278 3lr1_A Tungstate ABC transport 53.5 6.9 0.00024 37.5 2.8 75 491-574 18-95 (236)
279 1p99_A Hypothetical protein PG 53.5 20 0.0007 35.6 6.4 26 680-707 126-152 (295)
280 1jye_A Lactose operon represso 52.9 36 0.0012 34.5 8.6 83 162-248 59-143 (349)
281 3uug_A Multiple sugar-binding 52.8 32 0.0011 34.4 8.0 79 165-248 4-85 (330)
282 2jfq_A Glutamate racemase; cel 52.7 72 0.0025 31.4 10.3 39 88-126 76-114 (286)
283 3k4h_A Putative transcriptiona 52.4 28 0.00095 34.1 7.4 83 160-248 4-93 (292)
284 1uth_A LYSR-type regulatory pr 52.3 67 0.0023 31.7 10.4 69 493-573 119-187 (315)
285 3rot_A ABC sugar transporter, 52.0 22 0.00074 35.1 6.5 81 165-248 4-87 (297)
286 1b73_A Glutamate racemase; iso 51.9 64 0.0022 31.0 9.6 119 86-233 52-180 (254)
287 2fn9_A Ribose ABC transporter, 51.7 37 0.0013 33.1 8.2 79 165-248 3-84 (290)
288 3onm_A Transcriptional regulat 51.3 73 0.0025 29.6 10.0 68 492-573 40-107 (238)
289 3rfq_A Pterin-4-alpha-carbinol 51.2 40 0.0014 30.7 7.4 66 163-232 29-98 (185)
290 2pjk_A 178AA long hypothetical 50.8 51 0.0017 29.8 8.1 67 162-232 13-90 (178)
291 2jfn_A Glutamate racemase; cel 50.8 61 0.0021 31.8 9.4 38 89-126 76-114 (285)
292 3h5o_A Transcriptional regulat 50.5 41 0.0014 33.8 8.5 84 159-248 57-142 (339)
293 3k9c_A Transcriptional regulat 50.2 44 0.0015 32.7 8.4 82 159-248 7-89 (289)
294 1nh8_A ATP phosphoribosyltrans 50.1 23 0.00079 35.0 5.9 56 681-746 120-175 (304)
295 2vpn_A Periplasmic substrate b 49.9 16 0.00055 36.8 5.1 60 680-750 130-189 (316)
296 3cfz_A UPF0100 protein MJ1186; 49.9 30 0.001 34.2 7.1 70 495-573 20-95 (292)
297 2vvt_A Glutamate racemase; iso 49.7 66 0.0023 31.7 9.5 40 86-125 76-115 (290)
298 3brq_A HTH-type transcriptiona 49.7 51 0.0017 32.1 8.9 84 159-248 14-102 (296)
299 1zuw_A Glutamate racemase 1; ( 49.6 1.1E+02 0.0039 29.6 11.1 41 85-125 54-95 (272)
300 3kke_A LACI family transcripti 49.3 33 0.0011 33.9 7.4 86 157-248 8-95 (303)
301 1y5e_A Molybdenum cofactor bio 49.0 58 0.002 29.1 8.2 68 162-233 11-82 (169)
302 3ksm_A ABC-type sugar transpor 49.0 27 0.00093 33.7 6.6 80 166-248 2-85 (276)
303 2is8_A Molybdopterin biosynthe 49.0 52 0.0018 29.3 7.8 64 166-233 3-72 (164)
304 3okf_A 3-dehydroquinate syntha 48.7 35 0.0012 35.4 7.4 97 158-259 56-158 (390)
305 3ojc_A Putative aspartate/glut 48.5 13 0.00045 35.5 3.9 80 88-196 68-148 (231)
306 1jx6_A LUXP protein; protein-l 48.0 41 0.0014 33.8 8.0 82 165-248 44-129 (342)
307 3e3m_A Transcriptional regulat 47.9 49 0.0017 33.5 8.6 84 159-248 65-150 (355)
308 3huu_A Transcription regulator 47.9 28 0.00095 34.5 6.6 86 157-248 15-107 (305)
309 3uhf_A Glutamate racemase; str 47.6 1.3E+02 0.0043 29.4 10.9 37 89-125 79-115 (274)
310 2fep_A Catabolite control prot 47.3 49 0.0017 32.3 8.3 79 164-248 16-96 (289)
311 2fvy_A D-galactose-binding per 47.2 49 0.0017 32.5 8.3 79 165-248 3-85 (309)
312 3tsm_A IGPS, indole-3-glycerol 46.9 1.2E+02 0.004 29.5 10.5 87 153-249 82-171 (272)
313 3l4e_A Uncharacterized peptida 46.5 45 0.0016 31.0 7.2 97 152-259 15-120 (206)
314 3qk7_A Transcriptional regulat 46.4 38 0.0013 33.3 7.2 79 163-248 5-89 (294)
315 3dmy_A Protein FDRA; predicted 46.3 2.6E+02 0.009 29.6 13.9 145 81-247 45-198 (480)
316 2nr1_A NR1 M2, M2; receptor, s 45.7 8.3 0.00029 22.3 1.1 18 620-637 6-23 (27)
317 1ta9_A Glycerol dehydrogenase; 45.6 34 0.0011 36.4 6.9 96 154-259 81-178 (450)
318 2h3h_A Sugar ABC transporter, 45.5 41 0.0014 33.3 7.4 79 166-248 3-83 (313)
319 2iks_A DNA-binding transcripti 45.3 26 0.00089 34.4 5.8 85 159-248 15-101 (293)
320 3bil_A Probable LACI-family tr 45.0 39 0.0013 34.2 7.3 79 164-248 66-146 (348)
321 2q9u_A A-type flavoprotein; fl 44.9 1.6E+02 0.0053 30.5 12.2 88 163-259 255-350 (414)
322 3cfx_A UPF0100 protein MA_0280 44.4 42 0.0014 33.1 7.2 70 495-573 20-95 (296)
323 4ib2_A Putative lipoprotein; p 44.1 48 0.0016 31.8 7.0 54 465-541 11-64 (252)
324 3p6l_A Sugar phosphate isomera 44.1 94 0.0032 29.7 9.6 93 153-248 25-129 (262)
325 2o20_A Catabolite control prot 44.0 54 0.0018 32.8 8.1 83 160-248 59-143 (332)
326 3e61_A Putative transcriptiona 43.8 45 0.0015 32.2 7.3 78 163-248 7-87 (277)
327 2x7x_A Sensor protein; transfe 43.4 78 0.0027 31.4 9.2 81 163-248 5-88 (325)
328 3egc_A Putative ribose operon 42.7 27 0.00092 34.2 5.4 82 161-248 5-88 (291)
329 3hhf_B Transcriptional regulat 42.6 53 0.0018 29.7 7.3 67 492-573 20-86 (213)
330 3hly_A Flavodoxin-like domain; 42.4 1E+02 0.0035 27.0 8.8 86 166-261 2-93 (161)
331 3i42_A Response regulator rece 42.1 1.1E+02 0.0038 24.8 8.7 68 165-247 4-73 (127)
332 2bon_A Lipid kinase; DAG kinas 42.0 63 0.0022 32.6 8.2 94 141-246 12-105 (332)
333 3gv0_A Transcriptional regulat 42.0 47 0.0016 32.4 7.1 83 160-248 4-90 (288)
334 3iwt_A 178AA long hypothetical 41.8 60 0.002 29.2 7.2 64 166-233 17-91 (178)
335 1y80_A Predicted cobalamin bin 41.7 1.1E+02 0.0037 28.3 9.2 86 165-258 89-178 (210)
336 3r6u_A Choline-binding protein 41.5 85 0.0029 30.8 8.7 64 681-750 130-201 (284)
337 1oj7_A Hypothetical oxidoreduc 41.2 36 0.0012 35.6 6.3 83 155-243 43-128 (408)
338 3hs3_A Ribose operon repressor 41.0 54 0.0019 31.7 7.4 69 158-231 4-75 (277)
339 2g2c_A Putative molybdenum cof 40.6 54 0.0019 29.2 6.5 63 166-232 7-78 (167)
340 1i4n_A Indole-3-glycerol phosp 40.2 93 0.0032 29.9 8.4 86 153-249 64-152 (251)
341 3kjx_A Transcriptional regulat 39.9 98 0.0033 31.0 9.4 78 165-248 69-148 (344)
342 3c3k_A Alanine racemase; struc 39.8 91 0.0031 30.2 8.8 80 162-248 6-87 (285)
343 2csu_A 457AA long hypothetical 39.8 69 0.0024 34.0 8.3 145 81-248 73-228 (457)
344 2dri_A D-ribose-binding protei 39.6 75 0.0026 30.5 8.1 79 165-248 2-83 (271)
345 3ezx_A MMCP 1, monomethylamine 39.6 1.3E+02 0.0045 28.0 9.3 87 165-259 93-185 (215)
346 1h3d_A ATP-phosphoribosyltrans 39.3 57 0.0019 32.2 6.8 57 681-747 115-171 (299)
347 2ioy_A Periplasmic sugar-bindi 39.3 68 0.0023 31.1 7.8 79 165-248 2-83 (283)
348 1sg6_A Pentafunctional AROM po 38.2 1E+02 0.0034 32.0 9.1 96 159-259 31-140 (393)
349 2vk2_A YTFQ, ABC transporter p 38.1 52 0.0018 32.4 6.8 79 165-248 3-84 (306)
350 3dnf_A ISPH, LYTB, 4-hydroxy-3 38.0 1.8E+02 0.0062 28.5 10.1 55 72-126 185-241 (297)
351 2vd3_A ATP phosphoribosyltrans 37.8 54 0.0018 32.2 6.3 76 681-768 105-181 (289)
352 3out_A Glutamate racemase; str 37.3 61 0.0021 31.6 6.8 38 88-125 61-99 (268)
353 2rjo_A Twin-arginine transloca 37.3 58 0.002 32.6 7.1 79 165-248 6-89 (332)
354 2rgy_A Transcriptional regulat 36.9 59 0.002 31.7 6.9 80 163-248 7-91 (290)
355 3cvg_A Putative metal binding 36.5 18 0.00063 35.8 3.0 73 492-573 33-115 (294)
356 4a29_A Engineered retro-aldol 36.3 1.3E+02 0.0044 28.9 8.5 85 155-250 69-156 (258)
357 1nrz_A PTS system, sorbose-spe 36.2 79 0.0027 28.1 6.7 80 151-240 14-93 (164)
358 3gyb_A Transcriptional regulat 35.8 88 0.003 30.1 8.0 116 33-160 120-243 (280)
359 2hsg_A Glucose-resistance amyl 35.5 68 0.0023 32.0 7.3 80 163-248 59-140 (332)
360 3lte_A Response regulator; str 35.5 1.4E+02 0.0049 24.2 8.4 69 165-248 7-77 (132)
361 3brs_A Periplasmic binding pro 35.4 26 0.00089 34.2 3.9 81 165-248 6-91 (289)
362 3up9_A Putative uncharacterize 35.1 88 0.003 29.8 7.2 33 501-541 29-61 (245)
363 3d8u_A PURR transcriptional re 35.1 62 0.0021 31.1 6.7 78 165-248 4-83 (275)
364 2b4l_A Glycine betaine-binding 34.7 60 0.0021 31.6 6.3 39 496-543 182-220 (268)
365 1e5d_A Rubredoxin\:oxygen oxid 34.4 3.1E+02 0.01 28.0 12.4 92 158-258 246-344 (402)
366 3gxa_A Outer membrane lipoprot 34.4 63 0.0022 31.4 6.2 36 498-541 42-77 (275)
367 1vsq_C Mannose-specific phosph 34.2 73 0.0025 28.3 6.1 80 151-240 17-96 (165)
368 4gd5_A Phosphate ABC transport 34.0 34 0.0012 33.5 4.5 50 524-573 73-122 (279)
369 3kos_A HTH-type transcriptiona 33.9 2.6E+02 0.0088 25.0 10.9 65 682-752 95-163 (219)
370 3lmz_A Putative sugar isomeras 33.8 1.2E+02 0.004 29.0 8.3 94 152-248 32-127 (257)
371 3kbq_A Protein TA0487; structu 33.7 83 0.0029 28.2 6.5 62 165-231 4-70 (172)
372 3clk_A Transcription regulator 33.6 45 0.0015 32.5 5.4 81 163-248 7-89 (290)
373 4ef1_A Pheromone COB1/lipoprot 33.2 78 0.0027 30.3 6.6 36 498-541 22-57 (246)
374 3hcw_A Maltose operon transcri 32.7 56 0.0019 32.0 5.9 80 163-248 6-92 (295)
375 2qv7_A Diacylglycerol kinase D 32.4 1.6E+02 0.0055 29.5 9.4 75 164-245 24-102 (337)
376 3tqw_A Methionine-binding prot 32.3 81 0.0028 30.0 6.4 25 680-705 91-115 (240)
377 4ecf_A ABC-type phosphate tran 31.8 41 0.0014 32.6 4.6 71 493-573 17-91 (264)
378 3pzy_A MOG; ssgcid, seattle st 31.4 66 0.0023 28.6 5.5 64 164-232 7-75 (164)
379 1xah_A Sadhqs, 3-dehydroquinat 31.4 1.1E+02 0.0036 31.2 7.8 110 139-260 11-126 (354)
380 3sr0_A Adenylate kinase; phosp 31.3 23 0.00077 33.1 2.4 30 97-126 2-31 (206)
381 3k2d_A ABC-type metal ION tran 31.1 70 0.0024 30.4 5.8 34 500-541 27-60 (237)
382 4edp_A ABC transporter, substr 31.1 2.5E+02 0.0086 27.7 10.8 39 721-763 216-254 (351)
383 3grc_A Sensor protein, kinase; 30.8 1.3E+02 0.0044 24.9 7.3 67 165-246 7-75 (140)
384 3gl9_A Response regulator; bet 30.8 1.6E+02 0.0055 23.7 7.8 57 180-247 14-72 (122)
385 5nul_A Flavodoxin; electron tr 30.6 1.1E+02 0.0036 25.8 6.7 81 167-261 1-90 (138)
386 1dbq_A Purine repressor; trans 30.1 1.3E+02 0.0043 29.0 8.1 66 163-233 6-73 (289)
387 1jlj_A Gephyrin; globular alph 30.0 1.3E+02 0.0044 27.4 7.3 68 162-233 12-88 (189)
388 3umf_A Adenylate kinase; rossm 29.8 20 0.00067 33.8 1.7 31 96-126 30-60 (217)
389 3bbl_A Regulatory protein of L 29.8 81 0.0028 30.6 6.5 78 165-248 5-88 (287)
390 3gt7_A Sensor protein; structu 29.3 1.9E+02 0.0065 24.5 8.3 68 165-247 8-77 (154)
391 3qbe_A 3-dehydroquinate syntha 29.2 1.4E+02 0.0049 30.4 8.2 110 139-259 23-138 (368)
392 1uuy_A CNX1, molybdopterin bio 28.9 80 0.0027 28.1 5.6 65 165-233 6-81 (167)
393 4es6_A Uroporphyrinogen-III sy 28.9 43 0.0015 32.2 4.1 87 151-245 115-206 (254)
394 3kn3_A Putative periplasmic pr 28.8 29 0.001 33.2 2.8 73 492-573 19-94 (242)
395 2ohh_A Type A flavoprotein FPR 27.7 3.2E+02 0.011 27.8 11.1 77 162-247 254-337 (404)
396 3s40_A Diacylglycerol kinase; 27.7 1.7E+02 0.0058 28.8 8.5 75 163-245 7-85 (304)
397 4edp_A ABC transporter, substr 27.7 30 0.001 34.9 2.9 37 28-75 33-69 (351)
398 3lfj_A Manxb, phosphotransfera 27.5 86 0.0029 28.5 5.5 81 151-241 35-115 (187)
399 2qip_A Protein of unknown func 27.5 2.2E+02 0.0076 25.0 8.4 95 153-248 36-134 (165)
400 3miz_A Putative transcriptiona 27.3 1.5E+02 0.005 28.9 8.0 72 157-233 6-80 (301)
401 3iv7_A Alcohol dehydrogenase I 27.2 51 0.0018 33.8 4.5 95 153-260 26-122 (364)
402 1gud_A ALBP, D-allose-binding 27.2 1.2E+02 0.004 29.4 7.2 81 165-248 2-85 (288)
403 3fxb_A Trap dicarboxylate tran 27.1 64 0.0022 32.4 5.2 60 680-750 144-203 (326)
404 3o66_A Glycine betaine/carniti 26.9 1.2E+02 0.004 29.8 6.9 65 681-751 129-201 (282)
405 1twy_A ABC transporter, peripl 26.9 65 0.0022 31.0 5.2 59 26-102 24-82 (290)
406 3rf7_A Iron-containing alcohol 26.7 1.2E+02 0.0042 31.1 7.2 84 154-243 40-131 (375)
407 3o1i_D Periplasmic protein TOR 26.6 60 0.0021 31.7 4.9 80 165-248 6-88 (304)
408 4exl_A PBP 1, phosphate-bindin 26.4 66 0.0023 31.1 5.0 71 494-573 18-91 (265)
409 2i2x_B MTAC, methyltransferase 26.2 3.1E+02 0.011 26.1 9.8 83 165-258 124-211 (258)
410 1ble_A Fructose permease; phos 25.8 76 0.0026 28.1 4.8 80 151-240 15-94 (163)
411 3t6k_A Response regulator rece 25.8 2E+02 0.0069 23.6 7.6 57 180-247 16-74 (136)
412 3qja_A IGPS, indole-3-glycerol 25.7 2.3E+02 0.0078 27.4 8.7 87 153-249 75-164 (272)
413 3g85_A Transcriptional regulat 25.6 2E+02 0.0069 27.5 8.6 120 33-160 129-257 (289)
414 1qpz_A PURA, protein (purine n 25.4 2.6E+02 0.0087 27.7 9.6 69 160-233 54-124 (340)
415 3uor_A ABC transporter sugar b 25.2 63 0.0022 34.2 5.0 27 48-77 40-66 (458)
416 4gd5_A Phosphate ABC transport 25.1 52 0.0018 32.1 4.0 37 28-75 35-71 (279)
417 1ycg_A Nitric oxide reductase; 25.1 5.1E+02 0.017 26.2 12.1 91 158-257 245-342 (398)
418 3mwd_B ATP-citrate synthase; A 24.6 5.4E+02 0.018 25.7 12.4 163 83-257 90-259 (334)
419 2pln_A HP1043, response regula 24.6 2.2E+02 0.0075 23.3 7.7 54 180-246 30-83 (137)
420 3eye_A PTS system N-acetylgala 24.6 92 0.0031 27.8 5.0 80 151-241 19-99 (168)
421 1xrs_B D-lysine 5,6-aminomutas 24.3 2.2E+02 0.0077 27.3 8.1 86 166-259 122-223 (262)
422 3fd3_A Chromosome replication 24.2 3.6E+02 0.012 23.6 10.1 67 492-571 15-81 (208)
423 1pii_A N-(5'phosphoribosyl)ant 24.1 1.7E+02 0.0059 30.7 7.9 86 153-249 71-159 (452)
424 3szu_A ISPH, 4-hydroxy-3-methy 24.1 2E+02 0.0068 28.7 7.8 51 75-125 204-256 (328)
425 2hxw_A Major antigenic peptide 23.7 73 0.0025 29.8 4.7 40 495-544 16-55 (237)
426 2j48_A Two-component sensor ki 23.6 2.4E+02 0.0084 21.8 7.6 57 180-247 13-71 (119)
427 3cg1_A UPF0100 protein PF0080; 23.6 1E+02 0.0034 30.2 5.9 69 496-573 21-100 (296)
428 2pbq_A Molybdenum cofactor bio 23.2 1.6E+02 0.0055 26.4 6.6 63 165-232 6-77 (178)
429 3lft_A Uncharacterized protein 22.9 1E+02 0.0036 30.0 5.9 65 165-232 3-71 (295)
430 1di6_A MOGA, molybdenum cofact 22.9 1.9E+02 0.0064 26.5 7.0 65 165-233 4-76 (195)
431 3cs3_A Sugar-binding transcrip 22.9 4.6E+02 0.016 24.6 10.7 114 33-159 120-243 (277)
432 2jfz_A Glutamate racemase; cel 22.7 4E+02 0.014 25.3 9.8 37 89-125 55-91 (255)
433 3lou_A Formyltetrahydrofolate 22.6 3E+02 0.01 26.9 8.9 75 97-174 12-105 (292)
434 2qu7_A Putative transcriptiona 22.1 1.4E+02 0.0048 28.7 6.6 66 163-233 7-73 (288)
435 3lua_A Response regulator rece 22.1 1.9E+02 0.0066 23.8 6.8 66 165-245 5-75 (140)
436 3jvd_A Transcriptional regulat 21.4 5.8E+02 0.02 24.9 12.1 115 33-160 176-298 (333)
437 1usg_A Leucine-specific bindin 20.9 2.3E+02 0.0078 28.0 8.1 80 166-248 4-94 (346)
438 1ixh_A Phosphate-binding prote 20.9 58 0.002 32.6 3.4 70 495-573 17-87 (321)
439 3h5t_A Transcriptional regulat 20.9 1.2E+02 0.0043 30.5 6.1 77 165-248 69-152 (366)
440 3f2i_A ALR0221 protein; alpha- 20.8 2.2E+02 0.0075 25.3 6.9 93 146-246 27-124 (172)
441 3zy2_A Putative GDP-fucose pro 20.7 3.2E+02 0.011 27.5 8.4 90 144-248 260-349 (362)
442 3qax_A Probable ABC transporte 20.7 32 0.0011 32.8 1.4 20 211-230 167-186 (268)
443 2qr3_A Two-component system re 20.7 2.1E+02 0.0071 23.4 6.7 57 180-247 15-78 (140)
444 1pc3_A Phosphate-binding prote 20.5 47 0.0016 33.8 2.7 50 523-573 62-114 (350)
445 3hdv_A Response regulator; PSI 20.5 2.7E+02 0.0094 22.6 7.4 68 165-247 8-78 (136)
446 3eod_A Protein HNR; response r 20.2 3.4E+02 0.011 21.7 8.0 70 163-247 6-77 (130)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=2.3e-85 Score=785.44 Aligned_cols=683 Identities=19% Similarity=0.325 Sum_probs=565.3
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
++|+||+++|+++. ..+.|+++|+|+||+++ ++|+++++|++| ++..+++.+|++++++|.+||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999975 78999999999999976 899999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 188 (777)
+.+++++++.+++|+|++. .+.. ..++++||+.|+ ++.+++++++++||++|++|| |+++|....+.+.+.+
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 9999999999999999973 2222 357899999988 789999999999999999999 7889999999999999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCC
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~ 268 (777)
++.|++|+..+.++.....+..|++.++++++++++|+|++++...++..++++|+++||..++|+|+.++.+....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877654223478999999999999999999999999999999999999999999999999854333222
Q ss_pred CCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCC------CCCCCchhhhHhhHHHHHHHHHHHHHhcCCccccc
Q 004042 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (777)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~ 342 (777)
........|++++.++.++.+.+++|.++|+++++. ...++.+++++||||+++++|++++..++.+...+
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~ 300 (823)
T 3kg2_A 224 ---LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR 300 (823)
T ss_dssp ---SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCS
T ss_pred ---HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 223344566888888888899999999999998741 12356789999999999999999998765443211
Q ss_pred CCccccccCCCCcccCCc--cccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCCCC
Q 004042 343 NDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (777)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~gl 420 (777)
.....|.+. ..|.+++.|.++|++++|+|++|+++||++|++....|+|++++++++++||.|++..|+
T Consensus 301 ---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 301 ---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp ---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred ---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 122345544 567789999999999999999999999999999889999999999999999999998775
Q ss_pred ccCCCcccccCCCCCCccccccceeeeCCCCCCCCCcceecCCCceeEEeecCCCcccceeee---ccCCcceeeeeHHH
Q 004042 421 SKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSK---VRGSDMFQGFCIDV 497 (777)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~~~~~~~~~---~~~~~~~~G~~~dl 497 (777)
....+ .. ...++++|+|++...+||..+... .++++++.|||+||
T Consensus 372 ~~~~~----------------------------~~----~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~dl 419 (823)
T 3kg2_A 372 VLTED----------------------------DT----SGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCVDL 419 (823)
T ss_dssp EECCC----------------------------CC----SSCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHHH
T ss_pred eeccC----------------------------cc----cccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHHHH
Confidence 32210 00 112478999999887777543211 13567899999999
Q ss_pred HHHHHHHCCCeecEEEEecC-CCC---CCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEeccC
Q 004042 498 FTAAVNLLPYAVPYQFVAFG-DGH---KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~-~~~---~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
++++++++||++++...+.+ .|. .|++|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|++.
T Consensus 420 ~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~ 499 (823)
T 3kg2_A 420 AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ 499 (823)
T ss_dssp HHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCC
T ss_pred HHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCC
Confidence 99999999999666665532 232 56789999999999999999999999999999999999999999999999988
Q ss_pred -CCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCc--------------ccchhhHHHHHhhhhhccC
Q 004042 574 -LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP--------------KRQVITILWFSLSTLFFAH 638 (777)
Q Consensus 574 -~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 638 (777)
..++++.|++||++.+|++++++++++++++|+++|+++.+|+.+. ..++.+++|++++++++||
T Consensus 500 ~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 579 (823)
T 3kg2_A 500 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG 579 (823)
T ss_dssp CCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC--
T ss_pred cccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999999999887765432 2358899999999999998
Q ss_pred cC-cccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCC-CeEEeeCchHHHHHHhhhccccc
Q 004042 639 KE-NTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD-PIGYQEGSFAEYYLSQELNISKS 716 (777)
Q Consensus 639 ~~-~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~-~i~~~~~~~~~~~~~~~~~~~~~ 716 (777)
.. .|++.++|+++++||+++||++++|+|+|+|+||.+++.++|+|++||.+++. ++|+..+++..++|.+.......
T Consensus 580 ~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 659 (823)
T 3kg2_A 580 ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFD 659 (823)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHH
T ss_pred CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHH
Confidence 76 79999999999999999999999999999999999999999999999998653 58888888888888542211111
Q ss_pred ccc----------ccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC-CCeEEecccccccceEEEe
Q 004042 717 RLV----------ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 717 ~~~----------~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~g~~~ 776 (777)
+++ .+++.+++++++++. ++.+|++.|.+.++|+.++. |++..+++.+...+|||++
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~ 727 (823)
T 3kg2_A 660 KMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIAT 727 (823)
T ss_dssp HHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEE
T ss_pred HHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeEee
Confidence 211 235899999999831 67799999999999988775 9999999999999999986
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.6e-49 Score=431.15 Aligned_cols=368 Identities=15% Similarity=0.236 Sum_probs=316.1
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCC-CCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSI-LHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gi-l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
+++|+||+++|+++. ..+.|+++|+|+||+++|+ |+|++|+++++|++| ++.++++.+++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 578999999999975 7899999999999999999 699999999999988 99999999999999999999999999
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 186 (777)
..+.+++++++.+++|+|+++. +.+. ..+|.||+.|+ ++.+++++++++||++|++|| |++||....+.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998753 3333 34567787776 789999999999999999999 88999999999999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhccc
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 266 (777)
.+++.|++|+..+.++.. ...|++.++++|+++++|+|++.+...++..++++++++||..+.|+||+++.|....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999988776542 25699999999999999999999999999999999999999998999999886554433
Q ss_pred CCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHHHhcCCccc
Q 004042 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (777)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~ 340 (777)
. ........|++++.+..++++.+++|.++|+++++.. ..++.+++++|||++++++|++++..++....
T Consensus 229 ~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~ 304 (389)
T 3o21_A 229 L----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 304 (389)
T ss_dssp C----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred H----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 3 2344556778888888888999999999999987311 13467899999999999999999976543321
Q ss_pred ccCCccccccCCCCccc--CCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCC
Q 004042 341 FSNDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (777)
Q Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~ 418 (777)
.. .....| .+..+|++|..|.++|++++|+|++|++.||++|+|....|+|+++.++++++||.|++..
T Consensus 305 ~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 305 RR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp --------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence 10 112245 4456788899999999999999999999999999998889999999999999999999999
Q ss_pred CCccC
Q 004042 419 GLSKE 423 (777)
Q Consensus 419 gl~~~ 423 (777)
||+..
T Consensus 376 g~~~~ 380 (389)
T 3o21_A 376 RFVPF 380 (389)
T ss_dssp EEECC
T ss_pred Ccccc
Confidence 87543
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2.8e-49 Score=436.99 Aligned_cols=390 Identities=19% Similarity=0.327 Sum_probs=328.1
Q ss_pred CCCCceEEEEEEeeCCC-----cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcE
Q 004042 26 SARPAVVNVGALFTLDS-----TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIV 98 (777)
Q Consensus 26 ~~~~~~i~IG~l~~~s~-----~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~ 98 (777)
....++|+||+++|+++ ..|.....|+++|+++||++ |+++|++|+++++|++|++..|++.+++|+.+ +|.
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~ 87 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceE
Confidence 34567999999999995 45788999999999999999 77789999999999999999999999999985 899
Q ss_pred EEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccc
Q 004042 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYG 177 (777)
Q Consensus 99 aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g 177 (777)
+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++||++++||
T Consensus 88 aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 88 MVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp EEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred EEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh
Confidence 9999999999999999999999999999999999998 579999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 178 RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 178 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
....+.+++.+++.|++|+..+.++ .|++.++++|+++++|+|++++.+.++..++++++++|+..++++||+
T Consensus 168 ~~~~~~~~~~~~~~g~~v~~~~~~~-------~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 240 (433)
T 4f11_A 168 SEVRNDLTGVLYGEDIEISDTESFS-------NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWII 240 (433)
T ss_dssp HHHHHHHHHHSSSSSCEEEEEEEES-------SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHHHHHHHHHcCceEEEEeccC-------cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 9999999999999999999888775 267889999999999999999999999999999999999988899999
Q ss_pred eCc----chhc-----ccCCCCCchhhhhccceEEEEeecCCc--------hhHHHHHHHHHhhcCCCCCCCchhhhHhh
Q 004042 258 TDW----LAYM-----LDSASLPSETLESMQGVLVLRQHIPES--------DRKKNFLSRWKNLTGGSLGMNSYGLYAYD 320 (777)
Q Consensus 258 ~~~----~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~~~~~~~~~~~~~~~yD 320 (777)
+++ |... ....+......+..+|++++.++.+.. +..++|.++|+++. .+..++.++.++||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~-~~~~~~~~a~~~YD 319 (433)
T 4f11_A 241 PGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR-SGVGPSKFHGYAYD 319 (433)
T ss_dssp ESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHH-TTSCCCTTHHHHHH
T ss_pred cCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhc-CCCCcccchhhHHH
Confidence 988 4310 011223345567889999998866532 34788999999872 26778889999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCccccccCCCCcccC--CccccCchhHHHHHHHcccccCceeeEEEecCCCcccceE
Q 004042 321 SVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG--AMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAY 398 (777)
Q Consensus 321 Av~lla~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~ 398 (777)
||+++++|++++..+.... +.+..|. +...|.++..|.++|++++|+|++|+|+| ++|+| ...|
T Consensus 320 Av~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~-~~~~ 385 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGER-MGTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEE-ECEE
T ss_pred HHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCce-eeeE
Confidence 9999999999987542110 0010111 12245568999999999999999999999 89997 4899
Q ss_pred EEEEeecCceEEEEEEeCCCC-CccCCCcccccCCCCCCccccccceeeeCCCCCCCCC
Q 004042 399 DIINVIGTGFRMIGYWSNYSG-LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPR 456 (777)
Q Consensus 399 ~I~~~~~~~~~~vg~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~ 456 (777)
.|++++++++++||.|++... |. .+.+.|+||++.+++.+
T Consensus 386 ~I~~~~~g~~~~VG~~~~~~~~l~------------------~~~~~i~W~~~~~P~D~ 426 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAVADTLE------------------IINDTIRFQGSEPPKDD 426 (433)
T ss_dssp EEEEEETTEEEEEEEEETTTTEEE------------------ECTTTCCCSSSSCCCSS
T ss_pred EEEEEECCceEEEEEEECCCCeEE------------------EeCCceECCCCCCCCCc
Confidence 999999999999999986532 22 12257999998854433
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-47 Score=417.30 Aligned_cols=372 Identities=16% Similarity=0.200 Sum_probs=315.4
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCC-CCCEEEEEEccCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL-HGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQC 105 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil-~g~~i~~~~~D~~-~~~~~a~~~a~~l~~~~v~aviGp~~ 105 (777)
.+++|+||++||.++ .+...|+++|||+||+++++| ++++|.+...|++ +++..+++.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 367899999999875 467899999999999999998 3445555554444 58889999999999999999999999
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~ 185 (777)
|..+.+++++++.++||++++++..+.. ..|+ +++.|. +++++++++++++|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~--~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFV--LQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSE--EECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCC--ccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976554322 2344 444444 247899999999999999999777665 4567788
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (777)
+.+.+.|+++...+.++.. ..+++.++++++++++++|++.+...++..++++|+++|+..++++|++++++....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 8899999999988877655 899999999999999999999999999999999999999999999999998876554
Q ss_pred cCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcC-----CCCCCCchhhhHhhHHHHHHHHHHHHHhcCCccc
Q 004042 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTG-----GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (777)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~ 340 (777)
.. .+......++.++....+..+.+++|.++|++.+. .+..++.+++++||||+++++|++++.+++....
T Consensus 227 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~ 302 (389)
T 4gpa_A 227 SL----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS 302 (389)
T ss_dssp CC----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hh----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44 45666778889999999999999999999998764 3456788999999999999999999988765432
Q ss_pred ccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCCCC
Q 004042 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (777)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~gl 420 (777)
. .....++.|.+..+|++|..|.++|++++|+|++|+|.||++|+|.+..|+|+|++++++++||.|++.+||
T Consensus 303 ~-------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl 375 (389)
T 4gpa_A 303 R-------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKL 375 (389)
T ss_dssp C-------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred c-------cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCe
Confidence 1 123455677888899999999999999999999999999999999889999999999999999999999998
Q ss_pred ccCCC
Q 004042 421 SKEPP 425 (777)
Q Consensus 421 ~~~~~ 425 (777)
.+..+
T Consensus 376 ~~~~~ 380 (389)
T 4gpa_A 376 VLIQD 380 (389)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77654
No 5
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=3.9e-48 Score=421.99 Aligned_cols=368 Identities=18% Similarity=0.243 Sum_probs=308.7
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCCh-HHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSG-FIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~-~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
++||||+++|+++..|...+.|+++|+|+||+++|+|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999999999999999999999999999999999999999999976 45667899999889999999999955
Q ss_pred -HHHHHHhhccCCceEEecccCCCCCCC-CCCCce--EEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHH
Q 004042 109 -AHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFF--VRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (777)
Q Consensus 109 -~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~--~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 184 (777)
+.+++++++.+++|+|++++++ ++ ..+|++ ||+.|++..++.+++++++++||++|++||++++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 5799999999999999987654 23 467888 9999999999999999999999999999999999998776655
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhc
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 264 (777)
+.+.+.|++|.... + ++ ..|++.++++|+++++|+|++.+.+.++..++++++++|+..+.|+|+++++....
T Consensus 160 -~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 232 (393)
T 3om0_A 160 -RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPI 232 (393)
T ss_dssp -HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGG
T ss_pred -HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccc
Confidence 45677898987654 4 33 57899999999999999999999999999999999999999888999998865443
Q ss_pred ccCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCC------CCCCCchhhhHhhHHHHHHHHHHHHHhcCCc
Q 004042 265 LDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (777)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~ 338 (777)
.+. ........|++++....+..+.+++|.++|+++|+. ...++.+++++|||++++++|++++.+...
T Consensus 233 ~~l----~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~- 307 (393)
T 3om0_A 233 LHL----DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE- 307 (393)
T ss_dssp CCC----TTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC-
T ss_pred cch----hhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc-
Confidence 332 112234567888888888888999999999988831 034677899999999999999999854321
Q ss_pred ccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCC
Q 004042 339 ISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (777)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~ 418 (777)
.......|....+|.++..|.++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..
T Consensus 308 -----------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 376 (393)
T 3om0_A 308 -----------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNR 376 (393)
T ss_dssp -----------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC-
T ss_pred -----------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCC
Confidence 112344677888898899999999999999999999999999998999999999999999999999998
Q ss_pred CCccC
Q 004042 419 GLSKE 423 (777)
Q Consensus 419 gl~~~ 423 (777)
||.++
T Consensus 377 gl~~~ 381 (393)
T 3om0_A 377 TLAMN 381 (393)
T ss_dssp -----
T ss_pred Ccccc
Confidence 87654
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=9.5e-48 Score=419.35 Aligned_cols=369 Identities=22% Similarity=0.307 Sum_probs=318.9
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCC-CChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 29 ~~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~-~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
+++|+||+++|++ +..|...+.|+++|+|+||+++|+|+|++|++++.|+. .|+..+.+.+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 4689999999997 45688999999999999999999998889999998887 588899999999999999999999999
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 186 (777)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.+++++++++||++|++|| +++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999888864 5789999999999999999999999999999998 67899999999999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhccc
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~ 266 (777)
.+++.|++++... ++.+ ..|++.++++++++++|+|++.+.+.++..++++++++||..+.|+|++++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999998865 7655 7899999999999999999999999999999999999999999999999865332222
Q ss_pred CCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCCCC----------CCCchhhhHhhHHHHHHHHHHHHHhcC
Q 004042 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSL----------GMNSYGLYAYDSVWLLAHAIESFFNQG 336 (777)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~yDAv~lla~Al~~~~~~~ 336 (777)
. ......-.++.++.+..+.++..++|.++|++++.... .++.+++++|||++++++|++++....
T Consensus 235 ~----~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~ 310 (395)
T 3h6g_A 235 V----EPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMT 310 (395)
T ss_dssp C----TTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred h----HHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCC
Confidence 2 11111112256677777888999999999998652111 145689999999999999999874321
Q ss_pred CcccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEec-CCCcccceEEEEEeecCceEEEEEEe
Q 004042 337 GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNS-DRSLIHAAYDIINVIGTGFRMIGYWS 415 (777)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~-~g~r~~~~~~I~~~~~~~~~~vg~w~ 415 (777)
.....|.....|.+++.|.++|++++|+|++|+++||+ +|+|....|.|+++++++++.||.|+
T Consensus 311 ---------------~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~ 375 (395)
T 3h6g_A 311 ---------------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWD 375 (395)
T ss_dssp ---------------CCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEE
T ss_pred ---------------CcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEc
Confidence 23456888888999999999999999999999999999 99998889999999999999999999
Q ss_pred CCCCCccC
Q 004042 416 NYSGLSKE 423 (777)
Q Consensus 416 ~~~gl~~~ 423 (777)
+..|+.+.
T Consensus 376 ~~~g~~~~ 383 (395)
T 3h6g_A 376 PASGLNMT 383 (395)
T ss_dssp TTTEECCC
T ss_pred CCCCcccc
Confidence 99887654
No 7
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.2e-46 Score=416.75 Aligned_cols=359 Identities=16% Similarity=0.235 Sum_probs=300.3
Q ss_pred CCCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCC----CCCCCEEEEEEccCCCChHHHHHHHHHHH----hc
Q 004042 27 ARPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNCSGFIGMVEALRFM----ET 95 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~g----il~g~~i~~~~~D~~~~~~~a~~~a~~l~----~~ 95 (777)
..+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. |+..+.+++ ++
T Consensus 5 ~~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~ 83 (441)
T 1jdp_A 5 LPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGA 83 (441)
T ss_dssp CCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTC
T ss_pred CCCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccC
Confidence 3457899999999984 3456788999999999999998 8899999999999999998 766555544 33
Q ss_pred CcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCC--CCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe
Q 004042 96 DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD 173 (777)
Q Consensus 96 ~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~--~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~ 173 (777)
+|.+||||.+|..+.+++++++.+++|+|+++++++.++++ .||++||+.|++..++.+++++++++||++|++|++|
T Consensus 84 ~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d 163 (441)
T 1jdp_A 84 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 163 (441)
T ss_dssp CCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred CceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 89999999999999999999999999999999999999984 7999999999999999999999999999999999999
Q ss_pred Cccccc---hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCC
Q 004042 174 NEYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMG 250 (777)
Q Consensus 174 ~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~ 250 (777)
++||.. ..+.+++.+++.|++|+..+.++.. ..|++.++++|+ +++|+|++++...++..++++++++|+..
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~ 238 (441)
T 1jdp_A 164 DKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTS 238 (441)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred CCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCC
Confidence 999999 9999999999999999988776544 457999999999 89999999999999999999999999988
Q ss_pred CCeEEEEeCc----------chhcccCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhh-----cCCCCCCCchh
Q 004042 251 NGYVWIATDW----------LAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNL-----TGGSLGMNSYG 315 (777)
Q Consensus 251 ~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~ 315 (777)
+.++||++++ |..... ..........++.++....+..+.+++|.++|+++ |+....++.++
T Consensus 239 ~~~v~i~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 315 (441)
T 1jdp_A 239 GDYAFFNIELFNSSSYGDGSWKRGDK---HDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFV 315 (441)
T ss_dssp TTCEEEEECSSCCCSTTTCTTCCSST---THHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHH
T ss_pred CCEEEEEEeccccccccCCCCccCCc---ccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHH
Confidence 8899999883 321100 11111234556666777777889999999999887 41111345678
Q ss_pred hhHhhHHHHHHHHHHHHHhcCCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCccc
Q 004042 316 LYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIH 395 (777)
Q Consensus 316 ~~~yDAv~lla~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~ 395 (777)
+++||||+++++|++++..++.. +.++.+|.++|++++|+|++|++.||++|++ .
T Consensus 316 ~~~YdAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~ 370 (441)
T 1jdp_A 316 EGFHDAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-Y 370 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-C
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-c
Confidence 99999999999999998654311 2358899999999999999999999999997 5
Q ss_pred ceEEEEEee---cCceEEEEEEeCCCC
Q 004042 396 AAYDIINVI---GTGFRMIGYWSNYSG 419 (777)
Q Consensus 396 ~~~~I~~~~---~~~~~~vg~w~~~~g 419 (777)
..|.|++++ ++.+++||.|++..+
T Consensus 371 ~~~~I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 371 GDFSVIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred ccEEEEecccCCCCceEEEEEEcCCCC
Confidence 889999986 456899999998754
No 8
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=3.8e-47 Score=411.08 Aligned_cols=364 Identities=17% Similarity=0.254 Sum_probs=291.4
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
++|+||+++|+++ ...+.|+++|+++||++ |++|++++.|+++ +|..+++.+|+|++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999986 36799999999999987 7899999999765 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 188 (777)
+.+++++++.+++|+|++++.. ...++|+||+.|+ ++.+++++++++||++|++|| |++||....+.+.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFPT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCCC----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCCC----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 9999999999999999987632 2345789999876 789999999999999999999 8999999999999999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCC
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~ 268 (777)
++.|++|+....++........|++.++++|+++++|+|++.+...++..++++++++||..+.|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999887765422001368999999999999999999999999999999999999999889999998753222111
Q ss_pred CCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCCC------CCCCchhhhHhhHHHHHHHHHHHHHhcCCccccc
Q 004042 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (777)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~ 342 (777)
.+......+++++.+..++++..++|.++|+++++.. ..++.+++++|||++++++|++++.+++.....
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~- 299 (376)
T 3hsy_A 224 ---LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR- 299 (376)
T ss_dssp ---GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC-
T ss_pred ---HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc-
Confidence 1122223347778888888899999999999987311 147889999999999999999999875443211
Q ss_pred CCccccccCCCCccc--CCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCCCC
Q 004042 343 NDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (777)
Q Consensus 343 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~gl 420 (777)
.+....| .+..+|.++..|.++|++++|+|++|+|+||++|+|....|+|+++.++++++||.|++..||
T Consensus 300 --------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 371 (376)
T 3hsy_A 300 --------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (376)
T ss_dssp --------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred --------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCc
Confidence 1122346 566778889999999999999999999999999999899999999999999999999999886
Q ss_pred cc
Q 004042 421 SK 422 (777)
Q Consensus 421 ~~ 422 (777)
+.
T Consensus 372 ~~ 373 (376)
T 3hsy_A 372 VV 373 (376)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 9
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=6e-47 Score=418.80 Aligned_cols=382 Identities=20% Similarity=0.246 Sum_probs=315.8
Q ss_pred ceEEEEEEeeCCC---cchhhHHH-HHHHHHHHHhccCCCCCCCEEEEEEccC-----CCChHHHHHHHHHHHh-cCcEE
Q 004042 30 AVVNVGALFTLDS---TIGRVAKI-AIEEAVKDVNSNSSILHGTKLNITMQSS-----NCSGFIGMVEALRFME-TDIVA 99 (777)
Q Consensus 30 ~~i~IG~l~~~s~---~~g~~~~~-a~~lAve~iN~~~gil~g~~i~~~~~D~-----~~~~~~a~~~a~~l~~-~~v~a 99 (777)
++|+||+++|++. ..|..... |+++|+|+||+++|+|+|++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 4799999999983 55666676 9999999999999999999999999999 5666788888888775 49999
Q ss_pred EEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEE------EE
Q 004042 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI------FV 172 (777)
Q Consensus 100 viGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii------~~ 172 (777)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999998 46999999999999999999999999999999999 66
Q ss_pred eCccccchHHHHHHHHhh-cceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCC
Q 004042 173 DNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (777)
Q Consensus 173 ~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~ 251 (777)
++++| ...+.+.+.+.+ .|++|+..+.++.+ ..|++.++++|++ ++|+|++++.+.++..++++++++|+..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 67788 556778888888 89999988766434 7889999999998 99999999999999999999999999877
Q ss_pred CeEEEEeCcchhccc--------CC-----CCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCC-------CCCC
Q 004042 252 GYVWIATDWLAYMLD--------SA-----SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG-------SLGM 311 (777)
Q Consensus 252 ~~~~i~~~~~~~~~~--------~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~ 311 (777)
+++||.++.|..... .. ...+.+.+..+|++.+.+..|.++..++|.++|++++.. ...+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987754321 00 011234467889988888778888899999999877520 1125
Q ss_pred CchhhhHhhHHHHHHHHHHHHHhcCCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCC
Q 004042 312 NSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDR 391 (777)
Q Consensus 312 ~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g 391 (777)
+.++.++||||+++++|++++..+++. +.+++.|.++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 668899999999999999998754321 12488999999999999999999999999
Q ss_pred CcccceEEEEEe--ecCceEEEEEEeCCCC-CccCCCcccccCCCCCCccccccceeeeCCCCCCCCCcce
Q 004042 392 SLIHAAYDIINV--IGTGFRMIGYWSNYSG-LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWV 459 (777)
Q Consensus 392 ~r~~~~~~I~~~--~~~~~~~vg~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 459 (777)
++. ..|.|+++ .++.++.||.|++..+ +.+ .+.+.|+||++.++...+.|
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCCCCCCCCCC
Confidence 975 78999999 5678999999987653 111 12357999988544343334
No 10
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=2.4e-46 Score=406.16 Aligned_cols=365 Identities=18% Similarity=0.229 Sum_probs=311.8
Q ss_pred CCCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 004042 27 ARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQC 105 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aviGp~~ 105 (777)
..+++|+||+++|+++. ..+.|+++|+++||+++ +|++++.|+++ ++..+++.+++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 35689999999999975 78999999999999874 99999999987 9999999999999999999999999
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~ 185 (777)
|..+.+++++++.+++|+|+++ ++.++ ..+|.||+.|+ ++.+++++++++||++|++|| +++||....+.++
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 34343 44678888887 789999999999999999999 7789999999999
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (777)
+.+++.|++|+..+.++.+ ..|++.++.+|+++++|+|++.+.+.++..++++++++|+..+.|+|++++.+....
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999988765544 789999999999999999999999999999999999999998889999988543332
Q ss_pred cCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCC------CCCCCchhhhHhhHHHHHHHHHHHHHhcCCcc
Q 004042 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (777)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~ 339 (777)
+. ........|++++.+..+.++..++|.++|+++++. ..+++.+++++|||++++++|++++...+.+.
T Consensus 225 ~~----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~ 300 (384)
T 3saj_A 225 DL----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDI 300 (384)
T ss_dssp CH----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cH----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccce
Confidence 22 233445567888888888899999999999998731 11456789999999999999999998754332
Q ss_pred cccCCccccccCCCCcccCCc--cccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCC
Q 004042 340 SFSNDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (777)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~ 417 (777)
.. .+....|... .+|.++..|.++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++.
T Consensus 301 ~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~ 371 (384)
T 3saj_A 301 SR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371 (384)
T ss_dssp CC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETT
T ss_pred ec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCC
Confidence 11 1122356554 567889999999999999999999999999999899999999999999999999999
Q ss_pred CCCccCCC
Q 004042 418 SGLSKEPP 425 (777)
Q Consensus 418 ~gl~~~~~ 425 (777)
.|+.+..+
T Consensus 372 ~gl~~~~~ 379 (384)
T 3saj_A 372 DKFVPAAL 379 (384)
T ss_dssp TEEEECCC
T ss_pred CCccccCc
Confidence 88766544
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=4.1e-45 Score=415.07 Aligned_cols=387 Identities=21% Similarity=0.350 Sum_probs=318.8
Q ss_pred CCceEEEEEEeeCCC-------------cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh
Q 004042 28 RPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME 94 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~-------------~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~ 94 (777)
.+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.++++
T Consensus 11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~ 90 (555)
T 2e4u_A 11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 90 (555)
T ss_dssp ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHh
Confidence 467899999999983 2477888999999999999999999999999999999999999999988873
Q ss_pred -------------------------cCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCc
Q 004042 95 -------------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSD 148 (777)
Q Consensus 95 -------------------------~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~ 148 (777)
++|.+||||.+|..+.+++++++.+++|+|+++++++.|++ ..||++||+.|++
T Consensus 91 ~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d 170 (555)
T 2e4u_A 91 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 170 (555)
T ss_dssp TTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCH
T ss_pred CcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCCh
Confidence 48999999999999999999999999999999999999998 5799999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEE
Q 004042 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVI 227 (777)
Q Consensus 149 ~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vI 227 (777)
..++.+++++++++||++|++|++|++||....+.+++.+++.|++|+..+.++.. ....++..+++++++ +++++|
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~vI 248 (555)
T 2e4u_A 171 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARVV 248 (555)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCEE
Confidence 99999999999999999999999999999999999999999999999998888753 247899999999964 799999
Q ss_pred EEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHH-----------
Q 004042 228 VLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN----------- 296 (777)
Q Consensus 228 vl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------- 296 (777)
|+++...++..+++++.++|+ +++||+++.|....... ......++|++++.++....+.+++
T Consensus 249 i~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~---~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 249 VLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV---KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT---TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh---ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 999999999999999999987 68999999886543221 1123567899998876555444443
Q ss_pred ----HHHHHHhhcCCCC---------------------CCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCCccccccC
Q 004042 297 ----FLSRWKNLTGGSL---------------------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTME 351 (777)
Q Consensus 297 ----f~~~~~~~~~~~~---------------------~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~~~~~~~~ 351 (777)
|.+.|++.|+... .+..++..+||||+++|+||+++..+....
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~------------ 390 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ------------ 390 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT------------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC------------
Confidence 4455766663100 144578899999999999999986531110
Q ss_pred CCCcccCCccccCchhHHHH-HHHccccc------Cceee-EEEecCCCcccceEEEEEee--cC--ceEEEEEEeCCCC
Q 004042 352 GGNLHLGAMSIFDDGMLLLG-NILQSNLV------GLTGP-LKFNSDRSLIHAAYDIINVI--GT--GFRMIGYWSNYSG 419 (777)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~-~l~~~~f~------G~tG~-v~fd~~g~r~~~~~~I~~~~--~~--~~~~vg~w~~~~g 419 (777)
....|...... ++.+|.+ +|++++|+ |++|. |.||++|++ ...|+|++++ ++ .+++||.|++ .
T Consensus 391 -~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~ 465 (555)
T 2e4u_A 391 -TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--T 465 (555)
T ss_dssp -CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--S
T ss_pred -CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--e
Confidence 00123332223 4788998 99999999 99997 999999996 5889999996 33 4789999984 3
Q ss_pred CccCCCcccccCCCCCCccccccceeeeCCCCCCCCCcce
Q 004042 420 LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWV 459 (777)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 459 (777)
|.+ +.+.|.|++ .++|.+.|
T Consensus 466 l~i------------------~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 466 LSL------------------DVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp EEC------------------CGGGCCCTT--SSCCCCCS
T ss_pred EEE------------------eccccccCC--CCCcceee
Confidence 332 235799987 57888887
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.6e-45 Score=399.96 Aligned_cols=338 Identities=23% Similarity=0.320 Sum_probs=284.3
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALR-FMETDIVAIIG---- 102 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~-l~~~~v~aviG---- 102 (777)
.+++|+||+++|++ ..+.|+++|+++||++++. .|++|+++..|++++|.++++.+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 36789999999998 5799999999999999876 5899999999999999999977666 88889999999
Q ss_pred -CCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccch
Q 004042 103 -PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180 (777)
Q Consensus 103 -p~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~ 180 (777)
|.||..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++..++.+++++++++||++|++||+|++||.+.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678888999999999999999999999999998 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEE---------------------EeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHH
Q 004042 181 VSALNDKLAERRCRIS---------------------YKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (777)
Q Consensus 181 ~~~~~~~~~~~g~~v~---------------------~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~ 239 (777)
.+.+++.+++.|++++ ....++.+ ..|++.++++++++++|+|++++.+.++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPG----TKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTT----CSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCc----hhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999997542 11122222 6799999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCCCCCCCchhhhHh
Q 004042 240 FSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAY 319 (777)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~y 319 (777)
+++|+++|+++.+++||+++.|... ....+...|+++++.+.+.. .++.+|
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~-------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~Y 282 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG-------SALRYAPDGIIGLQLINGKN----------------------ESAHIS 282 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG-------GGGSSCCTTCEEEEETTTTC----------------------HHHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc-------ccccccCCccEEEEEcCCCc----------------------hhHHHH
Confidence 9999999999888999999987532 12345678999998865422 368899
Q ss_pred hHHHHHHHHHHHHHhcCCcccccCCccccccCCCCcccC-CccccCchhHHHHHHHcccc-cCceeeEEEecCCCcccce
Q 004042 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG-AMSIFDDGMLLLGNILQSNL-VGLTGPLKFNSDRSLIHAA 397 (777)
Q Consensus 320 DAv~lla~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~f-~G~tG~v~fd~~g~r~~~~ 397 (777)
|||+++++|++++..+... ......|. ...+|+.+..|.+.+.+++| +|++|++.||++|+|....
T Consensus 283 dAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp HHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred HHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 9999999999999765321 11122353 35689889999999999998 9999999999999987899
Q ss_pred EEEEEeecCceEEEEEEeC
Q 004042 398 YDIINVIGTGFRMIGYWSN 416 (777)
Q Consensus 398 ~~I~~~~~~~~~~vg~w~~ 416 (777)
|+|++++++++++||.|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999984
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=7.7e-45 Score=403.80 Aligned_cols=382 Identities=20% Similarity=0.351 Sum_probs=312.3
Q ss_pred CCCceEEEEEEeeCC------------C-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHH
Q 004042 27 ARPAVVNVGALFTLD------------S-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s------------~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~ 93 (777)
..+++|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 357899999999996 1 157788999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCC
Q 004042 94 ET-------------------------DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQS 147 (777)
Q Consensus 94 ~~-------------------------~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~ 147 (777)
++ +|.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999999 579999999999
Q ss_pred chHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHH-HHHhcCCCeE
Q 004042 148 DSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESRV 226 (777)
Q Consensus 148 ~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~l~~~~~~v 226 (777)
+..++.+++++++++||++|++|++|++||....+.+++.+++.|+||+..+.++.. ....+++.++ +.++++++++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999988764 3478899999 6788899999
Q ss_pred EEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHHHHHH------
Q 004042 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR------ 300 (777)
Q Consensus 227 Ivl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 300 (777)
||+++...++..++++++++|+. ++||+++.|....... ......+.|++++.++..+.+.+++|+..
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~---~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII---KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH---TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc---ccccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 99999999999999999999985 8999999886532110 01124678999999998888888877643
Q ss_pred ---------HHhhcC---CC------------------CCCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCCcccccc
Q 004042 301 ---------WKNLTG---GS------------------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM 350 (777)
Q Consensus 301 ---------~~~~~~---~~------------------~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~~~~~~~ 350 (777)
|...|+ .. .........+||||+++|+||++++.+...
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------------ 388 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------ 388 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST------------
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC------------
Confidence 444442 00 011123468999999999999999763111
Q ss_pred CCCCcccCCccccCchhHHH-HHHHcccccCc------ee-eEEEecCCCcccceEEEEEeec--C--ceEEEEEEeCCC
Q 004042 351 EGGNLHLGAMSIFDDGMLLL-GNILQSNLVGL------TG-PLKFNSDRSLIHAAYDIINVIG--T--GFRMIGYWSNYS 418 (777)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~-~~l~~~~f~G~------tG-~v~fd~~g~r~~~~~~I~~~~~--~--~~~~vg~w~~~~ 418 (777)
.....|...... ++.+|. ++|++++|.+. +| +|.||++|++ ...|+|+|++. + .+++||.|+ .
T Consensus 389 -~~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~--~ 463 (479)
T 3sm9_A 389 -NTTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA--E 463 (479)
T ss_dssp -TCSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES--S
T ss_pred -CCCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe--c
Confidence 011234433333 377899 99999999998 55 6999999995 78899999873 2 368999997 3
Q ss_pred CCccCCCcccccCCCCCCccccccceeeeCCCC
Q 004042 419 GLSKEPPETLYAQPFNRSSTIQHLHSVIWPGET 451 (777)
Q Consensus 419 gl~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~ 451 (777)
.|.+ +.+.|.||++.
T Consensus 464 ~l~i------------------~~~~I~W~~~~ 478 (479)
T 3sm9_A 464 TLSL------------------DVNSIHWSRNS 478 (479)
T ss_dssp SEEE------------------CGGGCCCC---
T ss_pred eEEE------------------ecceeEeCCCC
Confidence 3332 33579999763
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1e-43 Score=396.47 Aligned_cols=370 Identities=22% Similarity=0.370 Sum_probs=307.3
Q ss_pred CCCCceEEEEEEeeCCCc-----------------chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHH
Q 004042 26 SARPAVVNVGALFTLDST-----------------IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVE 88 (777)
Q Consensus 26 ~~~~~~i~IG~l~~~s~~-----------------~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~ 88 (777)
...+++|.||++||.+.. .|.+...|+.+|||+||+++++|||++|+++++|+++++..|++.
T Consensus 12 ~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~ 91 (496)
T 3ks9_A 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQ 91 (496)
T ss_dssp EEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHH
T ss_pred eecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHH
Confidence 346789999999998721 246778999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hcCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCC
Q 004042 89 ALRFM-----------------------------ETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQY 138 (777)
Q Consensus 89 a~~l~-----------------------------~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~ 138 (777)
+.+++ +++|.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|
T Consensus 92 a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~ 171 (496)
T 3ks9_A 92 SIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171 (496)
T ss_dssp HHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTC
T ss_pred HHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCC
Confidence 99997 348999999999999999999999999999999999999999 579
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHH
Q 004042 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (777)
Q Consensus 139 ~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 218 (777)
|++||+.|++..++.+++++++++||++|++|++|++||....+.+++++++.|+||+..+.++.. ....|+..++++
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~ 249 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRK 249 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888644 457899999999
Q ss_pred HhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHH
Q 004042 219 VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN 296 (777)
Q Consensus 219 l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 296 (777)
|+++ ++++|++++...++..++++++++|+.+ .+.||+++.|...... . ......+.|++++.++.++.+.+++
T Consensus 250 i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 250 LRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEV--I-EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHH--H-TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhcccccc--c-cccccccCceEEEeccCCcCcchHh
Confidence 9985 8899999999999999999999999974 4689999988654221 0 1233568899999999988888888
Q ss_pred HHHH---------------HHhhcC---CC---------------C------CCCchhhhHhhHHHHHHHHHHHHHhcCC
Q 004042 297 FLSR---------------WKNLTG---GS---------------L------GMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (777)
Q Consensus 297 f~~~---------------~~~~~~---~~---------------~------~~~~~~~~~yDAv~lla~Al~~~~~~~~ 337 (777)
|++. |...|. .. . ........+|+||+++|+||++++.+..
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 7643 443332 00 0 0011224699999999999999975321
Q ss_pred cccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceee-EEEecCCCcccceEEEEEeec---C--ceEEE
Q 004042 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIG---T--GFRMI 411 (777)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~fd~~g~r~~~~~~I~~~~~---~--~~~~v 411 (777)
. .....|.....++ +.+|.++|++++|.+.+|. |.||++|+. ...|+|+|++. + .+++|
T Consensus 406 ~-------------~~~~~c~~~~~~~-~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 P-------------GHVGLCDAMKPID-GSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp T-------------TCSSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred C-------------CCCCCCcCCCCCC-HHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 1 0112355444453 7789999999999999994 999999995 67999999973 2 36899
Q ss_pred EEEeC
Q 004042 412 GYWSN 416 (777)
Q Consensus 412 g~w~~ 416 (777)
|.|+.
T Consensus 471 G~~~~ 475 (496)
T 3ks9_A 471 GTWHE 475 (496)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99983
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.9e-44 Score=401.75 Aligned_cols=370 Identities=23% Similarity=0.388 Sum_probs=279.3
Q ss_pred CCCceEEEEEEeeCCC-------------cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHH
Q 004042 27 ARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s~-------------~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~ 93 (777)
..+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 3568899999999983 257888999999999999999999999999999999999999999999988
Q ss_pred h-----------------------cCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCch
Q 004042 94 E-----------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDS 149 (777)
Q Consensus 94 ~-----------------------~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~ 149 (777)
+ ++|.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 67999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhh-cceEEEEeeecCCCCCCChhhHHHHHHHHh-cCCCeEE
Q 004042 150 YQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVI 227 (777)
Q Consensus 150 ~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vI 227 (777)
.++.+++++++++||++|++|++|++||....+.+++.+++ .|+||+..+.++......+.|+..++.+++ ++++++|
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vI 251 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999998885 799999888886541111227888999998 5799999
Q ss_pred EEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHHHHHH-------
Q 004042 228 VLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR------- 300 (777)
Q Consensus 228 vl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------- 300 (777)
|+++...++..++++++++|+.+ +++||.++.|...... . ......+.|.+++.++..+.+.+++|+..
T Consensus 252 i~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p 327 (481)
T 3mq4_A 252 VIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINP--L-HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNR 327 (481)
T ss_dssp EECCCSSHHHHHC-----------CCCEEEC--------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccc--c-cccchhhccEEEEecCcCccccHHHHhhcCCcCcCC
Confidence 99999999999999999999864 4899999988754322 1 12246689999999998888888887643
Q ss_pred --------HHhhcC---C---------------CC--------CCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCCcc
Q 004042 301 --------WKNLTG---G---------------SL--------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSR 346 (777)
Q Consensus 301 --------~~~~~~---~---------------~~--------~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~~~ 346 (777)
|...|+ . .. ........+||||+++|+||++++.+....
T Consensus 328 ~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~------- 400 (481)
T 3mq4_A 328 RNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD------- 400 (481)
T ss_dssp TCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC-------
Confidence 333332 0 00 011334569999999999999997532110
Q ss_pred ccccCCCCcccCCccccCchhHHHHHHHcccccCcee-eEEEecCCCcccceEEEEEeec---C--ceEEEEEEe
Q 004042 347 LKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDIINVIG---T--GFRMIGYWS 415 (777)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG-~v~fd~~g~r~~~~~~I~~~~~---~--~~~~vg~w~ 415 (777)
....|.....++ +.+|.++|++++|.+.+| +|.||++|++ ...|+|+|++. + .+++||.|+
T Consensus 401 ------~~~~c~~~~~~~-~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ------YRGVCPEMEQAG-GKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ---------CCHHHHTSC-HHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ------CCCCCCCCCCcC-HHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 112354444453 778999999999999999 6999999995 68999999972 2 568999998
No 16
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.8e-40 Score=364.76 Aligned_cols=348 Identities=13% Similarity=0.047 Sum_probs=287.5
Q ss_pred CCCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCC-CChHHHHHHHHHHHh-cCcEEEE
Q 004042 27 ARPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFME-TDIVAII 101 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s~~---~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~-~~~~~a~~~a~~l~~-~~v~avi 101 (777)
..+++|+||+++|+++. .|.....|+++|+++||++||++ |++|+++++|++ |++..+++.+++|+. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 34678999999999954 47889999999999999999996 999999999987 699999999999999 6999999
Q ss_pred cCCChhHHHHHHHhhccCCceEEecccCCCCCC-----C-CCCCceEEecCCchHHHHHHHHHHHhc--------CCcEE
Q 004042 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS-----S-LQYPFFVRTTQSDSYQMTAVAEMVSYY--------GWNAV 167 (777)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~-----~-~~~~~~~r~~p~~~~~~~a~~~~l~~~--------~w~~v 167 (777)
||.+|..+.+++++++.+++|+|++++ ++.++ + ..|+++||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 999999999999999999999999643 33222 2 468999999999999999999998875 89999
Q ss_pred EEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC-hhHHHHHHHHHHHc
Q 004042 168 SVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYL 246 (777)
Q Consensus 168 aii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~l~~a~~~ 246 (777)
++|+++++||....+.+++.+++.|++|+..+.++.+ ..|++.++++|+++++|+|++.+. +.++..++++++++
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999998888866 789999999999999999999865 57899999999999
Q ss_pred CCCCCCeEEEEeCcchhcccCCCCCchhhhhccceEEEEee-cCCchhHHHHHHHHHhhcCCCCCC-CchhhhHhhHHHH
Q 004042 247 GMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQH-IPESDRKKNFLSRWKNLTGGSLGM-NSYGLYAYDSVWL 324 (777)
Q Consensus 247 gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~yDAv~l 324 (777)
|+ ...|+.++.+...... ....+..+|++....+ .+.++..++|.++|+++| +..+ +.++..+|||+++
T Consensus 244 g~---~~~~~~~~~~~~~~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~a~~~Yda~~~ 314 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLAAFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERY--GDLSSTASGCQTYSALYA 314 (419)
T ss_dssp CC---SCEEEECSGGGSHHHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHH--CTTSCHHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcHHHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHh--CCCCCcchhHHHHHHHHH
Confidence 98 3457776665432111 2233567787766543 346678999999999999 3444 4689999999999
Q ss_pred HHHHHHHHHhcCCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcc----------
Q 004042 325 LAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLI---------- 394 (777)
Q Consensus 325 la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~---------- 394 (777)
+++|++++.+... ...+.+++.++++|++++|+|++|+++||++|++.
T Consensus 315 ~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~ 372 (419)
T 3h5l_A 315 YSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDP 372 (419)
T ss_dssp HHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCT
T ss_pred HHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCc
Confidence 9999998643211 01123588999999999999999999999999842
Q ss_pred --cceEEEEEeecCce--EEE
Q 004042 395 --HAAYDIINVIGTGF--RMI 411 (777)
Q Consensus 395 --~~~~~I~~~~~~~~--~~v 411 (777)
...+.|+|++++++ +.|
T Consensus 373 ~~~~~~~i~q~q~g~~~~~~V 393 (419)
T 3h5l_A 373 SLGMPHIFSQIFDKAEDGVLI 393 (419)
T ss_dssp TSSEECEEEECCCTTSCCEEE
T ss_pred cccCCceEEEeeCCceeeEEE
Confidence 23466889998888 544
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=2.8e-39 Score=351.48 Aligned_cols=356 Identities=13% Similarity=0.084 Sum_probs=301.7
Q ss_pred CceEEEEEEeeCCCc--chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCCC
Q 004042 29 PAVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQC 105 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~--~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp~~ 105 (777)
+++|+||+++|++.. .|.....|+++|++++|++||+++|++|+++++|+++++..+.+.+++|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 568999999999863 4777899999999999999999855999999999999999999999999986 9999999999
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 184 (777)
|..+.+++++++..++|+|++.+.++.+++ ..++++||+.|++..++.++++++.+++|++|++|+++++||.+..+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999888888875 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 185 ~~~~~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
++.+++. |++++....++.+ ..|+..++++++++++|+|++.+...++..++++++++|+... +++.+..+.
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999998 8999888877765 6799999999999999999999999999999999999999543 333332221
Q ss_pred hcccCCCCCchhhhhccceEEEEe-e-cCCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCccc
Q 004042 263 YMLDSASLPSETLESMQGVLVLRQ-H-IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (777)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~ 340 (777)
..... ........+|++.... + .++.+..++|.++|++++ +..|+.++..+|||++++++|++++..
T Consensus 237 ~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~Yda~~~~a~Al~~ag~------ 305 (387)
T 3i45_A 237 EPEYL---NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--KEDPFVGSLVGYNTLTAMAVAFEKAGG------ 305 (387)
T ss_dssp SHHHH---GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred ChHHH---HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHHHHHHHhCC------
Confidence 11101 0111234677766532 3 246788999999999998 567888999999999999999999731
Q ss_pred ccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEee-cCceEEEEEEeCCCC
Q 004042 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGYWSNYSG 419 (777)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~vg~w~~~~g 419 (777)
.+++.|.++|++++|+|++|+++|++++++......|.+++ +++...++.|....|
T Consensus 306 -----------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 306 -----------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp -----------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred -----------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCc
Confidence 14899999999999999999999998665567778888876 566788999988777
Q ss_pred CccCC
Q 004042 420 LSKEP 424 (777)
Q Consensus 420 l~~~~ 424 (777)
....+
T Consensus 363 ~~~~p 367 (387)
T 3i45_A 363 GSVLP 367 (387)
T ss_dssp GGGSC
T ss_pred hhcCC
Confidence 54443
No 18
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.9e-39 Score=350.20 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=290.8
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 004042 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMET-DIVAIIG 102 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~-~v~aviG 102 (777)
+.++||||+++|+|+ ..|...+.|+++|++++| +|+ +|++|+++++|+.+ +|..+++.+.+|+.+ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 357899999999994 457889999999999998 677 59999999999986 899999999999976 9999999
Q ss_pred CCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
|.+|..+.+++++++..++|+|+++++++.+++. .+|+||+.+++..++.+++++++..+|++|++|++++.||....+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999999988888764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC-hhHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
.+++.+++.|++++..+.++.+ ..|+++++.+++++++|+|++... +.+...++++++++|+....+.++..+..
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999999877 789999999999999999988765 46788899999999998766667666543
Q ss_pred hhcccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcc
Q 004042 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (777)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~ 339 (777)
...... ....+...|++...++.+ +++..++|.++|++++.....++.++..+||+++++++|+++... .
T Consensus 234 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~ag---~- 305 (371)
T 4f06_A 234 VTEPDL----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATSG---K- 305 (371)
T ss_dssp GCGGGH----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTTT---S-
T ss_pred CCHHHH----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcC---C-
Confidence 322111 223456678877776554 467889999999998832345778899999999999999986411 1
Q ss_pred cccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEee--cCce
Q 004042 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI--GTGF 408 (777)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~--~~~~ 408 (777)
. +++.++++|++++|+|++|+++||++++.....+.|.+++ +|++
T Consensus 306 -----------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 306 -----------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKL 352 (371)
T ss_dssp -----------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEE
T ss_pred -----------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEE
Confidence 1 4899999999999999999999998887677788888887 5554
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=1.7e-38 Score=341.27 Aligned_cols=344 Identities=16% Similarity=0.150 Sum_probs=297.5
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
++|+||+++|++. ..|.....|+++|++++|+++|+ +|+++++++.|+++++..+.+.+++|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4799999999984 45788999999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEeCccccchHHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l-~~~~w~~vaii~~~~~~g~~~~~~~~ 185 (777)
..+.++++++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||++|++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999988888888778999999999999999999975 55699999999999999999999999
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (777)
+.+++.|++++....++.+ ..++...++++++.++++|+++++..++..++++++++|+..+ |+..+.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH
Confidence 9999999998877777755 6788999999999999999999999999999999999998654 77766543321
Q ss_pred cCCCCCchhhhhccceEEEEeecC-CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCC
Q 004042 266 DSASLPSETLESMQGVLVLRQHIP-ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (777)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~ 344 (777)
.. .......+|++...++.+ ..+..++|.++|+++ +..|+.++..+|||++++++|++++..
T Consensus 233 ~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~---~~~p~~~~~~~yda~~~~~~al~~ag~---------- 295 (356)
T 3ipc_A 233 LA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA---GFNPEAYTLYSYAAMQAIAGAAKAAGS---------- 295 (356)
T ss_dssp HH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT---TCCCCTTHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc---CCCcchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 11 123355788877766554 467889999999987 245777999999999999999999732
Q ss_pred ccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeec---CceEEEEEEeCC
Q 004042 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG---TGFRMIGYWSNY 417 (777)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~---~~~~~vg~w~~~ 417 (777)
.+++.|.++|++.+|+|++|+++||++|++....+.|+++++ |+|+.+..|.+.
T Consensus 296 -------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 148999999999999999999999999998878999999995 899999888653
No 20
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-38 Score=339.56 Aligned_cols=341 Identities=17% Similarity=0.183 Sum_probs=296.1
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 004042 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp~ 104 (777)
+.+++||+++|+|+ ..|.....|+++|++++|+ + .|+++++++.|+++++..+.+.+++|+++ +|.+||||.
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~ 89 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEV 89 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccC
Confidence 45899999999994 4578899999999999998 5 59999999999999999999999999998 599999999
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEE-eCccccchHH
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFV-DNEYGRNGVS 182 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l-~~~~w~~vaii~~-~~~~g~~~~~ 182 (777)
++..+.+++++++.+++|+|++.++++.+++ .++++||+.|++..++.++++++ +++||++|++||. +++|+....+
T Consensus 90 ~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~ 168 (366)
T 3td9_A 90 ASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSN 168 (366)
T ss_dssp SHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHH
T ss_pred CchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHH
Confidence 9999999999999999999999888877765 46999999999999999999998 5689999999986 6789999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
.+++.+++.|++++... ++.+ ..|+...++++++.++++|++.+...++..+++++++.|+.. .|++.+.+.
T Consensus 169 ~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~ 240 (366)
T 3td9_A 169 FFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGAD 240 (366)
T ss_dssp HHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGGC
T ss_pred HHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCcC
Confidence 99999999999998887 7765 678999999999999999999999999999999999999864 377766553
Q ss_pred hcccCCCCCchhhhhccceEEEEeecCC---chhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcc
Q 004042 263 YMLDSASLPSETLESMQGVLVLRQHIPE---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (777)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~ 339 (777)
..... ....+..+|++....+.+. .+..++|.++|++++ +..|+.++..+|||++++++|++++..
T Consensus 241 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~yda~~~~~~al~~ag~----- 309 (366)
T 3td9_A 241 APELI----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--GKEPAALNALGYDAYMVLLDAIERAGS----- 309 (366)
T ss_dssp STHHH----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred CHHHH----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHHHHHhCC-----
Confidence 32111 2234567888888766554 678999999999998 567889999999999999999999732
Q ss_pred cccCCccccccCCCCcccCCccccCchhHHHHHHHccc-ccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCCC
Q 004042 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN-LVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (777)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~ 418 (777)
.+++.+.++|++++ |+|++|+++|+++|++. ..+.|+++++|+++.++.|++.+
T Consensus 310 ------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 310 ------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp ------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred ------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 14899999999998 99999999999999975 56999999999999999998753
No 21
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.2e-38 Score=339.95 Aligned_cols=337 Identities=16% Similarity=0.194 Sum_probs=279.3
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 004042 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp 103 (777)
++++||||+++|+|+ ..|....+|+++|+++||++||++ |++|+++++|++++|..+++.+.+|+++ +|.+|+||
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~ 82 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGP 82 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecc
Confidence 567999999999994 457899999999999999999995 9999999999999999999999999987 78999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-CCcEEEEEEEe-CccccchH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-GWNAVSVIFVD-NEYGRNGV 181 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~-~w~~vaii~~~-~~~g~~~~ 181 (777)
.+|..+.+++++++.+++|+|++.++++.+++ .++|+||+.|++..++.++++++.+. +++++++++.+ ++||....
T Consensus 83 ~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 161 (353)
T 4gnr_A 83 ATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIA 161 (353)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHH
T ss_pred ccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHH
Confidence 99999999999999999999999998888876 34789999999999999999997655 55566655554 45777766
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
+.+.+ +.|.+++..+.++++ ..|++.++.+++++++|+|++.+.+.++..++++++++|+..+ ++..+++
T Consensus 162 ~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 231 (353)
T 4gnr_A 162 KSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGF 231 (353)
T ss_dssp HHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGG
T ss_pred HHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEeccc
Confidence 66554 457899999999877 7899999999999999999999999999999999999999755 5655544
Q ss_pred hhcccCCCCCchhhhhccceEEEEeecC---CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCc
Q 004042 262 AYMLDSASLPSETLESMQGVLVLRQHIP---ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (777)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~ 338 (777)
...... .....+..+|.+....+.+ .++..++|.++|++++ +..|+.++.++|||++++++|++++.
T Consensus 232 ~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~la~Ai~~a~----- 301 (353)
T 4gnr_A 232 NGEEFV---QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--NEEPSTFAALAYDSVHLVANAAKGAK----- 301 (353)
T ss_dssp CSHHHH---HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCS-----
T ss_pred ccchhh---hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHHHHHhcCC-----
Confidence 322111 0111245567666654433 4577899999999999 67788999999999999999997531
Q ss_pred ccccCCccccccCCCCcccCCccccCchhHHHHHHHcc-cccCceeeEEEecCCCcccceEEEEEeecCceEEEEE
Q 004042 339 ISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGY 413 (777)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~ 413 (777)
+++.++++|+++ .|+|++|+++||++|++ ...+.|+++++|+|+.+..
T Consensus 302 --------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 302 --------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp --------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEE
T ss_pred --------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEE
Confidence 377899999988 49999999999999986 5667899999999887644
No 22
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=8.3e-38 Score=336.19 Aligned_cols=344 Identities=17% Similarity=0.184 Sum_probs=297.3
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHH-hcCcEEEEcCC
Q 004042 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM-ETDIVAIIGPQ 104 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~-~~~v~aviGp~ 104 (777)
.++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+++|+ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 35799999999984 457889999999999999999996 99999999999999999999999999 67999999999
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHH
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 184 (777)
++..+.++++++...++|+|++.++++.+++.. +++||+.|++..++.++++++.+.||++|++|+.++.++.+..+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999988888777654 9999999999999999999988889999999999999999999999
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhc
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 264 (777)
++.+++.|+++.....++.+ ..++...++++++.++++|++.++...+..++++++++|+..+ |++.+.+...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999887777755 6788889999999999999999999899999999999999654 7776655332
Q ss_pred ccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCccccc
Q 004042 265 LDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (777)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~ 342 (777)
... .......+|++...++.+ ..+..++|.+.|++++ +..|+.++..+|||++++++|++++...
T Consensus 233 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~ag~~------- 299 (358)
T 3hut_A 233 KFI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--GAIPTLFAAHGYDAVGIMLAAVGRAGPE------- 299 (358)
T ss_dssp HHH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHhCCC-------
Confidence 111 223356788888877655 4678999999999998 5678899999999999999999997321
Q ss_pred CCccccccCCCCcccCCccccCchhH-HHHHHHcc-cccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeC
Q 004042 343 NDSRLKTMEGGNLHLGAMSIFDDGML-LLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSN 416 (777)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~ 416 (777)
+++. +.++|+++ .|+|++|+++|+++|++....+.|+++++|+|+.+..+.+
T Consensus 300 ----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 ----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 3777 99999999 8999999999999999767889999999999988766544
No 23
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2.6e-37 Score=334.46 Aligned_cols=334 Identities=15% Similarity=0.152 Sum_probs=290.4
Q ss_pred CceEEEEEEeeCCCc---c-hhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 004042 29 PAVVNVGALFTLDST---I-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~---~-g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aviGp 103 (777)
.++|+||+++|++.. . |.....|+++|++++ ++|+ .|++++++++|+++++..+.+.+++|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 368999999999843 4 778999999999999 4677 5999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
.+|..+.++++++..+++|+|++.++++.+++ ..+|++||+.|++..++.++++++.++||++|++|++++.+|.+..+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
.+++.+++.|++++..+.++.+ ..|+..++.+++++++|+|++.+...++..++++++++|+..+. .++..+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999988888766 67899999999999999999999999999999999999998766 445444433
Q ss_pred hcccCCCCCchhhhhccceEEEEeecCC-chhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccc
Q 004042 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (777)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~ 341 (777)
.... ....+..+|++...++.++ ++..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 234 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~~~~Al~~ag~------- 299 (375)
T 3i09_A 234 NDVH-----ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--KKMPSSLQAADYSSVTTYLKAVQAAGS------- 299 (375)
T ss_dssp HHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-------
T ss_pred hhHh-----hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 2211 1112457888777765543 678999999999999 677889999999999999999999732
Q ss_pred cCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCc
Q 004042 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTG 407 (777)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~ 407 (777)
.+++.|.++|++++|+|++|.++|+++|++ ...+.|++++++.
T Consensus 300 ----------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~-~~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 ----------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSM-IHDMYLMEVKKPS 342 (375)
T ss_dssp ----------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBE-ECCEEEEEECCGG
T ss_pred ----------------------CCHHHHHHHHhCCCccCCCCceEECCCCCe-eeeeEEEEEeccc
Confidence 148999999999999999999999999986 4578898987644
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.4e-37 Score=332.84 Aligned_cols=339 Identities=17% Similarity=0.218 Sum_probs=290.4
Q ss_pred ceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 30 AVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~s~~---~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
++|+||+++|++.. .|.....|+++|+++||++||+ +|++|++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999854 4778899999999999999999 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEeCccccchHHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l-~~~~w~~vaii~~~~~~g~~~~~~~~ 185 (777)
..+.++++++...++|+|++.++++.+++..++++||+.|++..++..+++++ +++||++|++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 99999999999999999999887777776557899999999999999999997 55799999999998889999999999
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcc
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (777)
+.+++.|+++.....++.+ ..++...++++++.++++|++.+....+..++++++++|+..+ |+.++.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS 232 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH
Confidence 9999999999877777654 5677889999999999999999888889999999999998654 78776553221
Q ss_pred cCCCCCchhhhhccceEEEEeec-CCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCC
Q 004042 266 DSASLPSETLESMQGVLVLRQHI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (777)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~ 344 (777)
.. .......+|++...++. +..+..++|.++|++++ +..++.++..+|||++++++|++++..
T Consensus 233 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~yda~~~~~~al~~~g~---------- 296 (346)
T 1usg_A 233 LS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--KDPSGPYVWITYAAVQSLATALERTGS---------- 296 (346)
T ss_dssp HH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 11 12234578888776543 34677899999999988 566788999999999999999999721
Q ss_pred ccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEee-cCceEEE
Q 004042 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMI 411 (777)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~v 411 (777)
. +++.|.++|++.+|+|++|+++|+++|++....|.|++++ +|+++.+
T Consensus 297 ------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 ------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 4889999999999999999999999999876789999999 8888754
No 25
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=3.8e-38 Score=337.10 Aligned_cols=338 Identities=15% Similarity=0.234 Sum_probs=258.1
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhc-CcEEEEcC-CCh
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMET-DIVAIIGP-QCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~-~v~aviGp-~~s 106 (777)
..+.||++|..++. +.+++-|++..|.-. ...++..++. .+.+||..+.+.+|+++.. +|.||||+ .++
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~ 74 (364)
T 3qel_B 3 PSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTD 74 (364)
T ss_dssp CEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSC
T ss_pred CceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 46899999987653 889999999998543 2356776543 4678999999999999976 79888864 444
Q ss_pred hHHHH--HHHhhccCCceEEecccCCC-CCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 107 TVAHI--VSYVSNELQVPLLSFGVTDP-TLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 107 ~~~~~--va~~~~~~~iP~Is~~a~~~-~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
..+.+ ++.+++.+++|+|+++++++ .+++ .+||++||+.|++..++.++++++++|||++|++||+|+ . +.+
T Consensus 75 ~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~~ 150 (364)
T 3qel_B 75 QEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GYQ 150 (364)
T ss_dssp CTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---THH
T ss_pred chHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cHH
Confidence 44544 89999999999999999988 8998 579999999999999999999999999999999999875 3 344
Q ss_pred HHHHHHhhc--c--eEEEEeeecCCCCCCChhhHHHHH-HHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 183 ALNDKLAER--R--CRISYKSGIPPESGVNTGYVMDLL-VKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 183 ~~~~~~~~~--g--~~v~~~~~~~~~~~~~~~d~~~~l-~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
.+.+.+++. | +|+.....++.. ....+++..+ ++++++++++||++++.+.+..++++|.++||++++|+||+
T Consensus 151 ~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~ 228 (364)
T 3qel_B 151 DFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228 (364)
T ss_dssp HHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEE
T ss_pred HHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 555555554 4 366555444333 2245677888 79999999999999999999999999999999999999999
Q ss_pred eCcchhcccCCCCCchhhhhccceEEEEeecCCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCC
Q 004042 258 TDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (777)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~ 337 (777)
++.+....+. .+ .+...|++++++.. |++ ...+++||||+++|+|++++..+..
T Consensus 229 t~~~~~~~~~--~~---~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~~~ 282 (364)
T 3qel_B 229 PSLVAGDTDT--VP---SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSEHS 282 (364)
T ss_dssp CHHHHCSTTC--CC---TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ecccccCccc--cc---ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9876433322 11 23457888876643 221 2467899999999999999876533
Q ss_pred cccccCCccccccCCCCcccCCcc--ccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEee-cCceEEEEEE
Q 004042 338 KISFSNDSRLKTMEGGNLHLGAMS--IFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGYW 414 (777)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~vg~w 414 (777)
..+ .....|.... +|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|++++ ++++++||.|
T Consensus 283 ~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W 349 (364)
T 3qel_B 283 FIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKW 349 (364)
T ss_dssp CCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEE
T ss_pred CCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEE
Confidence 221 1234566654 68889999999999999998 899999999999999999998 6789999999
Q ss_pred eCCCCCc
Q 004042 415 SNYSGLS 421 (777)
Q Consensus 415 ~~~~gl~ 421 (777)
++ .+|.
T Consensus 350 ~~-~~L~ 355 (364)
T 3qel_B 350 KD-KSLQ 355 (364)
T ss_dssp CS-SCEE
T ss_pred CC-CeEE
Confidence 84 3443
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-38 Score=343.16 Aligned_cols=351 Identities=13% Similarity=0.028 Sum_probs=298.2
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 004042 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp 103 (777)
..++|+||+++|++. ..|.....|+++|++++|++||++ |++|++++.|+++++.++.+.+++|+++ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 357999999999984 457789999999999999999996 9999999999999999999999999997 9999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHh-cCCcEEEEEEEeCccccchH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGV 181 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~-~~w~~vaii~~~~~~g~~~~ 181 (777)
.++..+.++++++...++|+|++.++. .+.+ ..++++||+.|++..++.++++++.+ +||++|++|+.++.||.+..
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHI-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCG-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccCh-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 688889999999999999999976544 4554 56799999999999999999999876 69999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
+.+++.+++.|++++....++.+ ..|+..+++++++.++++|++.+...++..++++++++|+..+ |+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCc
Confidence 99999999999999988888765 6789999999999999999999999999999999999998643 6666544
Q ss_pred hhcccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCch----hhhHhhHHHHHHHHHHHHHhc
Q 004042 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSY----GLYAYDSVWLLAHAIESFFNQ 335 (777)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~yDAv~lla~Al~~~~~~ 335 (777)
...... .......+|++...++.+ ..+..++|.++|+++| +..++.+ +..+|||++++++|++++...
T Consensus 234 ~~~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 234 GGPDLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY--GRPENFIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp CSHHHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT--TCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh--CCCcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 322111 223356788888776543 2456789999999998 4444433 789999999999999998652
Q ss_pred CCcccccCCccccccCCCCcccCCccccCchhHHHHHHHccc----cc-------CceeeEEEecCCCcccceEEEEEee
Q 004042 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN----LV-------GLTGPLKFNSDRSLIHAAYDIINVI 404 (777)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-------G~tG~v~fd~~g~r~~~~~~I~~~~ 404 (777)
++. .+++.|+++|++++ |+ |++|+++|+++|++....+.|++++
T Consensus 308 ~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~ 362 (392)
T 3lkb_A 308 FKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK 362 (392)
T ss_dssp HSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE
T ss_pred CCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEe
Confidence 211 14899999999997 98 9999999999998777889999999
Q ss_pred cCceEEEEEEeCCCC
Q 004042 405 GTGFRMIGYWSNYSG 419 (777)
Q Consensus 405 ~~~~~~vg~w~~~~g 419 (777)
+++++.|+.|....+
T Consensus 363 ~g~~~~v~~w~~~~~ 377 (392)
T 3lkb_A 363 GGRFVPVTEPFTSAL 377 (392)
T ss_dssp TTEEEECSCCBCCHH
T ss_pred CCEEEEeccccchhH
Confidence 999999999987654
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=4.1e-37 Score=333.36 Aligned_cols=335 Identities=13% Similarity=0.108 Sum_probs=287.7
Q ss_pred CceEEEEEEeeCCC---cc-hhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 004042 29 PAVVNVGALFTLDS---TI-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~-g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aviGp 103 (777)
+++|+||+++|++. .. |.....|+++|++++ ++|+ .|++|+++++|+++++..+.+.+++|++ ++|.+||||
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 56899999999984 34 788999999999999 4677 5999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
.+|..+.+++++++.+++|+|++.++++.+++ ..+|++||+.|++..++.++++++.++||++|++|++++.+|.+..+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999888888887 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
.+++.+++.|++++....++.+ ..|++.++.+++++++|+|++.+.+.++..++++++++|+..+.+ ++.+..+.
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 235 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDI 235 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCC
T ss_pred HHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccc
Confidence 9999999999999988888766 678999999999999999999999999999999999999976543 34433322
Q ss_pred hcccCCCCCchhhhhccceEEEEeecCC-chhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccc
Q 004042 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (777)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~ 341 (777)
... . .....+..+|++...++.++ .+..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 236 ~~~-~---~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~Yda~~~~~~Al~~ag~------- 302 (379)
T 3n0w_A 236 LTD-V---KSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--GKMPTNNQAGGYSAALQYLKAVNAIGS------- 302 (379)
T ss_dssp HHH-H---HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred hHH-H---HhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--CCCCChHHHHHHHHHHHHHHHHHHhCC-------
Confidence 211 1 01122457888777765543 578899999999999 667889999999999999999999732
Q ss_pred cCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceee-EEEecCCCcccceEEEEEeecCc
Q 004042 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIGTG 407 (777)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~fd~~g~r~~~~~~I~~~~~~~ 407 (777)
.+++.|.++|++++|+|+.|. ++|+++|++ ...+.|+++++++
T Consensus 303 ----------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ----------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp ----------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred ----------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 148999999999999999986 999999986 5678899987654
No 28
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=7.2e-37 Score=331.08 Aligned_cols=345 Identities=11% Similarity=0.138 Sum_probs=298.3
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 004042 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp 103 (777)
..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++.++.+.+.+|+++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 457899999999984 457789999999999998 555 79999999999999999999999999986 99999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
.++..+.++++++..+++|+|++.++++.+++ ..++++||+.|++..++.++++++.++||++|++|+.++.+|.+..+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 99999999999999999999999988888887 34899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
.+++.+++.|++++....++.+ ..++...++++++.++++|++.++...+..++++++++|+..+ |+.++ |.
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~~ 241 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-FL 241 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-GG
T ss_pred HHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-cC
Confidence 9999999999999887777765 6788899999999899999998999999999999999998644 55554 32
Q ss_pred hcccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCccc
Q 004042 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (777)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~ 340 (777)
.. . .-.......+|++...++.+ ..+..++|.++|++++ +..|+.++..+|||++++++|++++...
T Consensus 242 ~~-~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~~g~~----- 310 (375)
T 4evq_A 242 TD-G---VEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--KIPPDVFAVQGWDAGQLLDAGVKAVGGD----- 310 (375)
T ss_dssp TT-T---THHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CH-H---HHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 11 1 11233456788888877654 4588999999999998 6778889999999999999999986321
Q ss_pred ccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEEEeCC
Q 004042 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (777)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~ 417 (777)
+.+++.|.++|++++|+|++|+++|+++|++ ...+.|.++++++|+.|+.+-+.
T Consensus 311 ----------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 311 ----------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp ----------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEECS
T ss_pred ----------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhhc
Confidence 1248999999999999999999999999986 56899999999999999987543
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=5.4e-37 Score=333.79 Aligned_cols=347 Identities=16% Similarity=0.163 Sum_probs=291.2
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCC-CCC--EEEEEEccCCCChHHHHHHHHHHH-hcCcEEEE
Q 004042 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSIL-HGT--KLNITMQSSNCSGFIGMVEALRFM-ETDIVAII 101 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil-~g~--~i~~~~~D~~~~~~~a~~~a~~l~-~~~v~avi 101 (777)
.++|+||+++|+++ ..|.....|+++|+++||++||++ +|+ +|++++.|+++++..+.+.+++|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999994 457888999999999999999995 699 999999999999999999999999 66999999
Q ss_pred cCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cCCcEEEEEEE-eCccccc
Q 004042 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFV-DNEYGRN 179 (777)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-~~w~~vaii~~-~~~~g~~ 179 (777)
| .+|..+.+++++++..++|+|++.+..+ +. .++++||+.|++..++.++++++.+ +||++|++|+. ++.+|.+
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999766543 33 5799999999999999999999876 69999999999 9999999
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHH--HhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
..+.+++.+++.|++++....++.+ ..|+..++.+ +++.++++|++.++..++..++++++++|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999988888765 7799999999 999999999999999999999999999998654 555
Q ss_pred eCcchhcccCCCCCchhhhhccc-eEEEEeec-----CCchhHHHHHHHHHhhcCCCCCC--CchhhhHhhHHHHHHHHH
Q 004042 258 TDWLAYMLDSASLPSETLESMQG-VLVLRQHI-----PESDRKKNFLSRWKNLTGGSLGM--NSYGLYAYDSVWLLAHAI 329 (777)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~yDAv~lla~Al 329 (777)
.+++... .. -.......+| ++...++. ++.+. .+|.++|+++| +...| +.++..+|||++++++|+
T Consensus 231 ~~~~~~~-~~---~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~-~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDE-RS---PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMN-GVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCST-TH---HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHT-TCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCH-HH---HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHh-CCCCcccccHHHHHHHHHHHHHHHH
Confidence 4433211 11 0123356788 77766655 23444 67999999998 21333 478999999999999999
Q ss_pred HHHHhcC-CcccccCCccccccCCCCcccCCccccCchhHHHHHHHccccc--Ccee-eEEEecCCCcccceEEEEEe-e
Q 004042 330 ESFFNQG-GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLV--GLTG-PLKFNSDRSLIHAAYDIINV-I 404 (777)
Q Consensus 330 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~--G~tG-~v~fd~~g~r~~~~~~I~~~-~ 404 (777)
+++...+ +. . +++.|.++|++..|+ |++| +++|+++|++....+.|.++ +
T Consensus 305 ~~a~~~g~~~------------------------~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~ 359 (391)
T 3eaf_A 305 ESVTSQDLQE------------------------R-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGE 359 (391)
T ss_dssp TTSCHHHHHH------------------------H-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECT
T ss_pred HHHHhcCCCC------------------------C-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEec
Confidence 9862211 00 1 489999999998898 9999 99999877667888999999 8
Q ss_pred cCceEEEEEEeCC
Q 004042 405 GTGFRMIGYWSNY 417 (777)
Q Consensus 405 ~~~~~~vg~w~~~ 417 (777)
+|+|+.++.|...
T Consensus 360 ~G~~~~v~~~~~~ 372 (391)
T 3eaf_A 360 NGELQLMGKFEAP 372 (391)
T ss_dssp TSSEEEEEEECCC
T ss_pred CCEEEEeeeecCc
Confidence 9999999999754
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.1e-36 Score=328.61 Aligned_cols=346 Identities=14% Similarity=0.164 Sum_probs=294.4
Q ss_pred CCceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 004042 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aviGp 103 (777)
..++|+||+++|++. ..|.....|+++|++++|. ++ +|++|++++.|+++++..+.+.+++|++ ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 357899999999984 3478899999999999973 35 6999999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~ 183 (777)
.++..+.++++++...++|+|++.+.++.+++. ++++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888777765 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchh
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 263 (777)
+++.+++.|++++....++.+ ..|+...++++++.++++|++.+....+..++++++++|+..+++.|++++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999888888765 6789999999999999999998888899999999999999866577888874332
Q ss_pred cccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccc
Q 004042 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (777)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~ 341 (777)
.... .......+|++...++.+ ..+..++|.++| ++| ++..++.++..+|||++++++|++++...
T Consensus 235 ~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~~~p~~~~~~~yda~~~~~~al~~~g~~------ 302 (368)
T 4eyg_A 235 DDLL----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE-FGQRPGFMAVGGYDGIHLVFEALKKTGGK------ 302 (368)
T ss_dssp HHHH----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH-HSSCCCHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred HHHH----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh-CCCCCChHHHHHHHHHHHHHHHHHHhCCC------
Confidence 2111 112245688887776654 468899999999 777 34578889999999999999999986311
Q ss_pred cCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEe-cCCCcccceEEEEEee--cCceEE--EEEEeC
Q 004042 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFN-SDRSLIHAAYDIINVI--GTGFRM--IGYWSN 416 (777)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd-~~g~r~~~~~~I~~~~--~~~~~~--vg~w~~ 416 (777)
. +++.|.++|++++|+|++|+++|| ++|+ ....+.|.+++ +|+|+. ++.|.+
T Consensus 303 ---------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 303 ---------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp ---------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeecccc
Confidence 1 489999999999999999999999 6676 47778899988 787754 455543
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=9.2e-37 Score=328.74 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=290.4
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 004042 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp~ 104 (777)
+++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|+++ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 56899999999983 457788999999999999999995 9999999999999999999999999996 999999999
Q ss_pred ChhHHHHHHH--hhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHH
Q 004042 105 CSTVAHIVSY--VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (777)
Q Consensus 105 ~s~~~~~va~--~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~ 182 (777)
++..+.++++ ++...++|+|++.+.++.+++ ++++||+.|++..++.++++++.++||++|++|+.++.+|.+..+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998888777776 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
.+++.+++.|++++....++.+ ..|+..+++++++.++++|++.++...+..++++++++|+..+ |+..+.+.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999998877777765 6789999999999999999999999999999999999999654 67666544
Q ss_pred hcccCCCCCchhh-hhccceEEEEe----ecCCchhHHHHHHHHHhhcCCCC--CCCchhhhHhhHHHHHHHHHHHHHhc
Q 004042 263 YMLDSASLPSETL-ESMQGVLVLRQ----HIPESDRKKNFLSRWKNLTGGSL--GMNSYGLYAYDSVWLLAHAIESFFNQ 335 (777)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~yDAv~lla~Al~~~~~~ 335 (777)
..... .... +..+|++.... +.+..+..++|.++|++++ +. .|+.++..+|||++++++|++++..
T Consensus 233 ~~~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~p~~~a~~~yda~~~~~~al~~ag~- 305 (364)
T 3lop_A 233 PGILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVG--AKDVDLSFRAVEGFVAAKVLAEAIRRAGP- 305 (364)
T ss_dssp HHHHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHT--CTTCCCCHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred hHHHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHHHHHHhCC-
Confidence 32111 1233 56778776652 2356788999999999998 44 7888999999999999999999721
Q ss_pred CCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcc-cccC-ceeeEEEecCCCcccceEEEEEeecCceE
Q 004042 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVG-LTGPLKFNSDRSLIHAAYDIINVIGTGFR 409 (777)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G-~tG~v~fd~~g~r~~~~~~I~~~~~~~~~ 409 (777)
. .+++.|.++|+++ .|+| ++|+++|++++++......|.+++++++.
T Consensus 306 --~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 306 --K-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp --S-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred --C-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 1 1489999999999 6999 99999999988766677788888877664
No 32
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=5.9e-37 Score=331.31 Aligned_cols=330 Identities=11% Similarity=0.111 Sum_probs=273.2
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhc-cCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 004042 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNS-NSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (777)
Q Consensus 30 ~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~-~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp~ 104 (777)
++|+||+++|+++ ..|.....|+++|++++|+ .+|+ +|++|+++++|++++|..+++.+++|+++ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5799999999994 4578899999999999998 6777 59999999999999999999999999985 999999999
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCC-CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHH
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~ 183 (777)
+|..+.+++++++.+++|+|++.++++.+++ ..++|+||+.|++..++.+++.++++++| +|++|+++++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 9999999999999999999998787888887 45899999999999999999977888898 899999999999999999
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC-----CeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-----SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
+++.+++.|++++..+.++.+ ..|++.++++|++++ +|+|++...+... .+.++.++++...++.++..
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~ 234 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTG 234 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEEC
T ss_pred HHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeec
Confidence 999999999999998888866 789999999999988 9999987443221 23455555665445555543
Q ss_pred CcchhcccCCCCCchhhhhccceEEEEee---cCCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhc
Q 004042 259 DWLAYMLDSASLPSETLESMQGVLVLRQH---IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQ 335 (777)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~ 335 (777)
+...... .......|+.+...+ .++.+..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 235 ~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--g~~p~~~a~~~Yda~~~l~~Al~~ag~- 304 (374)
T 3n0x_A 235 GNILPAL-------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--NAPPDFFTAGGFSAAMAVVTAVQKAKS- 304 (374)
T ss_dssp CCCTTGG-------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccchhh-------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--CCCCChhHHHHHHHHHHHHHHHHHhCC-
Confidence 3221110 111334566555443 345678899999999999 577889999999999999999999732
Q ss_pred CCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeec
Q 004042 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG 405 (777)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~ 405 (777)
.+++.|.++|++++|+|++|+++|++++++....+.|++++.
T Consensus 305 ----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 305 ----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp ----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred ----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 148999999999999999999999965444677888988874
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=8.6e-36 Score=323.97 Aligned_cols=343 Identities=14% Similarity=0.192 Sum_probs=285.3
Q ss_pred CCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 004042 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~---~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp 103 (777)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++.++.+.+++|+++ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 3578999999999854 56788999999999873 7999999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCC--CCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLS--SLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~--~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~ 181 (777)
.++..+.++++++...++|+|++.++++.++ ...++++||+.|++..++.++++++.++||++|++|+.++.+|.+..
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999988777776 35679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcc
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
+.+++.+++.|++++..+.++.+ ..++...++++++.++++|++.+++.++..++++++++|+..+ ++..+++
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~ 249 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGV 249 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGG
T ss_pred HHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEecccc
Confidence 99999999999999877777655 6788999999999999999999998899999999999999743 5655544
Q ss_pred hhcccCCCCCchhhhhccceEEEEee------cC-C---chhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHH
Q 004042 262 AYMLDSASLPSETLESMQGVLVLRQH------IP-E---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIES 331 (777)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~ 331 (777)
...... ....+..+|++....+ .+ . .+..++|.++|+++| +..+++.++..+||+++++++|+++
T Consensus 250 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~ 324 (386)
T 3sg0_A 250 ATEEFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAAN-GGAAPTIFGVHLWDSMTLVENAIPA 324 (386)
T ss_dssp CSHHHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHHHHHHH
Confidence 322111 1233567887776531 12 2 245789999999998 3336788999999999999999999
Q ss_pred HHhcCCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcc-cccCceeeEEEecCCCc--ccceEEEEEeecCce
Q 004042 332 FFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGF 408 (777)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~r--~~~~~~I~~~~~~~~ 408 (777)
+.+.... +.+++++.|.++|+++ .|+|++|+++|++++++ ....+.|+++++|+|
T Consensus 325 a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 325 ALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp HHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEE
Confidence 8654211 0122478999999999 79999999999886543 345689999999988
Q ss_pred EEE
Q 004042 409 RMI 411 (777)
Q Consensus 409 ~~v 411 (777)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2.2e-33 Score=304.68 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=282.3
Q ss_pred CceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh-cCcEEEEcCC
Q 004042 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGPQ 104 (777)
Q Consensus 29 ~~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aviGp~ 104 (777)
+++++||+++|++. .++.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|++ ++|.+|||+.
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 56799999999974 357788999999999999999995 999999999999999999999999997 7999999999
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHH
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 184 (777)
++..+.++.+++...++|+|++.+... ...++++||+.+++..++..+++++.+.+|++|++|+.++.++....+.+
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 998888899999999999998765321 12357899999999999999999999999999999999888999999999
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhc
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~ 264 (777)
++.+++.|+++.....++.. ....++...++++++.++++|++.++...+..++++++++|+..+.+.++..+ +...
T Consensus 161 ~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~-~~~~ 237 (385)
T 1pea_A 161 RHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT-TSEA 237 (385)
T ss_dssp HHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESS-CCHH
T ss_pred HHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecc-cchH
Confidence 99999999998876556541 23789999999999889999999888888999999999999975444455443 3221
Q ss_pred ccCCCCCchhhhhccceEEEEeecC--CchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCccccc
Q 004042 265 LDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (777)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~ 342 (777)
... ....+..+|++...++.+ ..+..++|.++|+++|+....++.++..+|||++++++|++++...
T Consensus 238 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~~------- 306 (385)
T 1pea_A 238 EVA----KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW------- 306 (385)
T ss_dssp HHT----TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC-------
T ss_pred HHH----hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-------
Confidence 111 111235788887776543 4678899999999988322357788999999999999999997311
Q ss_pred CCccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEe-ecCceEEEEEE
Q 004042 343 NDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINV-IGTGFRMIGYW 414 (777)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~-~~~~~~~vg~w 414 (777)
+++.|.++|++++|+|++|+++||+++++....+.|.++ ++|+++.+...
T Consensus 307 ----------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 ----------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ----------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ----------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 489999999999999999999999866545677889999 78888877554
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=3.3e-34 Score=308.54 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=283.6
Q ss_pred CCceEEEEEEeeCCCc---chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 004042 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~---~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp 103 (777)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+++ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4568999999999843 46778999999999983 7999999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~ 183 (777)
.++..+.++.+++...++|+|++.+. + +....++++||+.|++..++..+++++.++||++|++|+.++.++.+..+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 3 334567999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchh
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~ 263 (777)
+++.+++.|++++....++.+ ..++...++++++.++++|++.+....+..++++++++|+..+ ++...++..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999999887777765 6788899999999999999999989999999999999999754 455554432
Q ss_pred cccCCCCCchhhhhccceEEEEee----------cCCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHH
Q 004042 264 MLDSASLPSETLESMQGVLVLRQH----------IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFF 333 (777)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~ 333 (777)
.... .......+|++....+ .+..+..++|.++|+++| +..+++.++..+|||++++++|++++.
T Consensus 228 ~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~p~~~~~~~yda~~~~~~al~~a~ 302 (362)
T 3snr_A 228 MDFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKY-GPSSRSQFAGHSYDAFKVLERVVPVAL 302 (362)
T ss_dssp HHHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHH-CTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHh-CCCCCCchhHhHHHHHHHHHHHHHHhh
Confidence 2111 2233567888776531 123356899999999998 333678999999999999999999986
Q ss_pred hcCCcccccCCccccccCCCCcccCCccccCchhHHHHHHHcc-cccCceeeEEEecCCCc--ccceEEEEEeecCceEE
Q 004042 334 NQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGFRM 410 (777)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~g~r--~~~~~~I~~~~~~~~~~ 410 (777)
+..+. +.+.+++.|+++|+++ +|+|++|+++|++++++ ....+.|+++++|+++.
T Consensus 303 ~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 303 KKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp HHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred ccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 54210 0122488999999999 89999999999987543 35678999999998875
Q ss_pred E
Q 004042 411 I 411 (777)
Q Consensus 411 v 411 (777)
|
T Consensus 361 v 361 (362)
T 3snr_A 361 V 361 (362)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=4.2e-28 Score=253.32 Aligned_cols=307 Identities=11% Similarity=0.075 Sum_probs=243.5
Q ss_pred EEEEEeeCC---CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 004042 33 NVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (777)
Q Consensus 33 ~IG~l~~~s---~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~ 109 (777)
|||+++|+| +.+|...++|+++|. .|++++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 799999999 456889999999986 3789999999999987 5667888888899999999999999
Q ss_pred HHHHHhh-ccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHH
Q 004042 110 HIVSYVS-NELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (777)
Q Consensus 110 ~~va~~~-~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 188 (777)
.++++.+ ...++|+|++.+.. ......+.|+||+ +..++++++++++.+.|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~--~~~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGL--SPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCC--CHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEEC--CHHHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 78999999976643 2222233455564 455578999999888899999999999999999999999999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcch--hccc
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--YMLD 266 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~--~~~~ 266 (777)
++.|++++..+.++.. .|++.+++++ ..++|+|++.+.+.++..+.++++..+.. -..+.++.+. +...
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~---~pl~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPN---LAIYASSRASASATNT 217 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHT
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCC---CCEEEeccccccCCCC
Confidence 9999999988888643 5999999999 47899999999999998888888876543 3466776665 3211
Q ss_pred CCCCCchhhhhccceEEEE-eec--CCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccccC
Q 004042 267 SASLPSETLESMQGVLVLR-QHI--PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (777)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~ 343 (777)
........+|++... |+. ++.+..++|.+.|+..+ .+..+.+++|||+.++.++ .++.
T Consensus 218 ----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l~---------- 278 (325)
T 2h4a_A 218 ----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NELR---------- 278 (325)
T ss_dssp ----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHHH----------
T ss_pred ----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHHh----------
Confidence 134456789987765 443 45567888888776543 2455679999999986654 3321
Q ss_pred CccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEE
Q 004042 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMI 411 (777)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~v 411 (777)
.+.+..|+|+||.++||++|+ ....+.+.++++|+++.|
T Consensus 279 ----------------------------~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 ----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ----------------------------hCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 133457999999999999998 478889999999988765
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.96 E-value=5.2e-28 Score=255.63 Aligned_cols=312 Identities=12% Similarity=0.066 Sum_probs=240.5
Q ss_pred EEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 32 VNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 32 i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
+|||+++|+|+ .+|...++|+++|++ |++++++++|++++|..++ ...+.+++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 68999999994 458889999999862 6778999999999997664 44556679999999999988
Q ss_pred HHHHHHh-hccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHH
Q 004042 109 AHIVSYV-SNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDK 187 (777)
Q Consensus 109 ~~~va~~-~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~ 187 (777)
+.++++. .+...+|+++.++++. .. ..+++||+.+++..++.++++++...|++++++++.+++||+...+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 8776655 4556677776444332 22 347899999999999999999999899999999999999999999999999
Q ss_pred HhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeCcchhcccC
Q 004042 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267 (777)
Q Consensus 188 ~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~~~~~~~~~ 267 (777)
+++.|++|+..+.++.. +....+.+++..++|+|++.+.+.++..+++++++.|+..+ ++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~------~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP------ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST------THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC------chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccch
Confidence 99999999988888654 34456778889999999999999999999999999887543 6666554332111
Q ss_pred CCCCchhhhhccceEEEE-ee--cCCchhHHHHHHHHHhhcCCCCCCCchhhhHhhHHHHHHHHHHHHHhcCCcccccCC
Q 004042 268 ASLPSETLESMQGVLVLR-QH--IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (777)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDAv~lla~Al~~~~~~~~~~~~~~~ 344 (777)
..........|++... ++ .++.+..++|.++|++.+ .+..+.+++|||+.++.++.+..
T Consensus 219 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~AlgyDA~~l~~~l~~~~------------ 280 (327)
T 3ckm_A 219 --TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQFNELR------------ 280 (327)
T ss_dssp --TCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTHHHHH------------
T ss_pred --hcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc----CCCchHHHHHHHHHHHHHHHHhc------------
Confidence 1112223456665554 33 345678888988888766 22346788999998876554331
Q ss_pred ccccccCCCCcccCCccccCchhHHHHHHHcccccCceeeEEEecCCCcccceEEEEEeecCceEEEEE
Q 004042 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGY 413 (777)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~vg~ 413 (777)
.+....|+|++|.++||++|+ ....+.+.++++|++++|..
T Consensus 281 ---------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ---------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ---------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred ---------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 223346999999999999997 57788999999999998754
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.86 E-value=1.3e-21 Score=205.29 Aligned_cols=220 Identities=21% Similarity=0.400 Sum_probs=160.4
Q ss_pred CCceeEEeecCCCcccceeeecc------CCcceeeeeHHHHHHHHHHCCCeecEEEEecC-CCCC---CCChhHHHHHH
Q 004042 463 NGKLLKIGVPNRASYREFVSKVR------GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGHK---NPSYTQLVDSI 532 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~------~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~~---~~~~~~~~~~l 532 (777)
.+++|+|++...|| |.+.++ +++++.|+++||++++++++|+++++...+.+ .|.. +.+|++++.+|
T Consensus 11 ~~~~l~V~~~~~~P---~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTILEEP---YVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECCBTT---TBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEeccCC---eeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 46889999987655 444331 35789999999999999999999666654422 2321 46899999999
Q ss_pred hcCceeEEEeeEEEeecccceeeecccccccceEEEEeccC-CCCCcceeeccCchhHHHHHHHHHHHHHhhheeeeccc
Q 004042 533 TTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRI 611 (777)
Q Consensus 533 ~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~-~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~ 611 (777)
.+|++|++++++++|++|.+.++||.||+..+..++++++. ....++.|+.||+. .
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~-----------------------~ 144 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL-----------------------V 144 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----------------------C
Confidence 99999999988999999999999999999999999999987 57889999999981 0
Q ss_pred CCCCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhC
Q 004042 612 NDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS 691 (777)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~ 691 (777)
|+ |++++...|++++||.
T Consensus 145 ------------------------------p~------------------------------tv~~~~~~i~~~~dL~-- 162 (312)
T 1yae_A 145 ------------------------------PR------------------------------GSERMESPIDSADDLA-- 162 (312)
T ss_dssp ----------------------------------------------------------------------CCSHHHHH--
T ss_pred ------------------------------Cc------------------------------ccccccCCCCCHHHHh--
Confidence 11 3345557899999999
Q ss_pred CC---CeEEeeCchHHHHHHhhhccc-----------cccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC
Q 004042 692 DD---PIGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ 757 (777)
Q Consensus 692 ~~---~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~ 757 (777)
++ +||++.+++...+|.+. +.. ..++..+++.++++++|.+ |+ ||++.+...+.|++++.
T Consensus 163 g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~~ 236 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRN 236 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTTC
T ss_pred hccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhcC
Confidence 66 79988777777777432 111 1245668999999999999 89 99999999999999999
Q ss_pred CCeEEecccccccceEEEe
Q 004042 758 CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 758 ~~l~~~~~~~~~~~~g~~~ 776 (777)
|++++++..+...+|+||+
T Consensus 237 ~~l~~~~~~~~~~~~~~a~ 255 (312)
T 1yae_A 237 CNLTQIGGLIDSKGYGVGT 255 (312)
T ss_dssp TTEEEESSCSSCEEEEEEE
T ss_pred CCEEEecccccccceEEEE
Confidence 9999999888889999986
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.82 E-value=1.1e-20 Score=195.81 Aligned_cols=198 Identities=21% Similarity=0.375 Sum_probs=155.6
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecC-CCC---CC----CChhHHHHHHhcCc
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH---KN----PSYTQLVDSITTGV 536 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~---~~----~~~~~~~~~l~~g~ 536 (777)
+.++|++.. .|+||...+. ++++.||++||+++|++++|+++++...+.+ +|. .| +.|++++++|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 567777754 4455554443 5689999999999999999999666554322 222 12 47999999999999
Q ss_pred eeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 004042 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (777)
Q Consensus 537 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (777)
+|++++++++|++|.+.++||.||+..+..++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999999876
Q ss_pred CCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCC---
Q 004042 617 GPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD--- 693 (777)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~--- 693 (777)
++++++||...++
T Consensus 155 ----------------------------------------------------------------~i~~~~dl~~~g~~~~ 170 (292)
T 1pb7_A 155 ----------------------------------------------------------------RITGINDPRLRNPSDK 170 (292)
T ss_dssp ----------------------------------------------------------------CCCSTTCHHHHSCBTT
T ss_pred ----------------------------------------------------------------CCCCCcCccccCcccc
Confidence 5777888874342
Q ss_pred C-eEEeeCchHHHHHHhhhcc----ccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEeccccc
Q 004042 694 P-IGYQEGSFAEYYLSQELNI----SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT 768 (777)
Q Consensus 694 ~-i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~ 768 (777)
. +|+..++..+.++.+.... +..++..+++.++++++|++ |++||++.|...+.|+++++|++++++..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~ 246 (292)
T 1pb7_A 171 FIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELFF 246 (292)
T ss_dssp BCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCSE
T ss_pred eEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCEEEcCcccc
Confidence 3 5888899888888532111 12345668999999999999 9999999999999999999999999999898
Q ss_pred ccceEEEe
Q 004042 769 KSGWGFVS 776 (777)
Q Consensus 769 ~~~~g~~~ 776 (777)
..+||||+
T Consensus 247 ~~~~~ia~ 254 (292)
T 1pb7_A 247 RSGFGIGM 254 (292)
T ss_dssp EEEECCEE
T ss_pred CCceEEEE
Confidence 89999986
No 40
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.82 E-value=2.1e-20 Score=194.12 Aligned_cols=180 Identities=24% Similarity=0.407 Sum_probs=148.2
Q ss_pred ceeeeeHHHHHHHHHHCCCeecEEEEecC-CCC-CCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceE
Q 004042 489 MFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH-KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLV 566 (777)
Q Consensus 489 ~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~-~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~ 566 (777)
++.||++||+++|++++|+++++...+.+ .|. .+..|++++++|.+|++|++++++++|++|.+.++||.||+..+..
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 37899999999999999999665543321 122 3467999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCcCcccCch
Q 004042 567 VVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTL 646 (777)
Q Consensus 567 ~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 646 (777)
++++++.
T Consensus 147 i~~~~~~------------------------------------------------------------------------- 153 (294)
T 2rc8_A 147 ILVRTRG------------------------------------------------------------------------- 153 (294)
T ss_dssp EEEETTS-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 9999887
Q ss_pred hHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhh----hCCCCeEEeeCchHHHHHHhhhcccc--ccccc
Q 004042 647 GRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLR----KSDDPIGYQEGSFAEYYLSQELNISK--SRLVA 720 (777)
Q Consensus 647 ~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~----~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~ 720 (777)
..|++++||. .++++||+.+++..+.++++...... .+.+.
T Consensus 154 ---------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~ 200 (294)
T 2rc8_A 154 ---------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN 200 (294)
T ss_dssp ---------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGC
T ss_pred ---------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4678888887 34889999999999999854321100 12335
Q ss_pred cCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC--CCCeEEecccccccceEEEe
Q 004042 721 LRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 721 ~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~~~~~~g~~~ 776 (777)
+.+.++++++|+++ +|++||++.+...+.|++++ .|++++++..+...+||||+
T Consensus 201 ~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~ 256 (294)
T 2rc8_A 201 VPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGL 256 (294)
T ss_dssp BSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEE
T ss_pred CCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEe
Confidence 78999999999872 36899999999999999876 58899999989889999987
No 41
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.82 E-value=2.8e-20 Score=192.14 Aligned_cols=204 Identities=20% Similarity=0.337 Sum_probs=156.3
Q ss_pred CCCceeEEeecCCCcccceeeecc---CCcceeeeeHHHHHHHHHHCCCeecEEEEecC-CCC-CCCChhHHHHHHhcCc
Q 004042 462 NNGKLLKIGVPNRASYREFVSKVR---GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH-KNPSYTQLVDSITTGV 536 (777)
Q Consensus 462 ~~~~~l~v~~~~~~~~~~~~~~~~---~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~-~~~~~~~~~~~l~~g~ 536 (777)
.+|++||||+...++|++|....+ +..++.|+++|+++++++++|+++++...+.+ .|. .+++|++++++|.+|+
T Consensus 26 ~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~ 105 (284)
T 2a5s_A 26 LTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQR 105 (284)
T ss_dssp C-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTS
T ss_pred CCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCC
Confidence 468888888887766666543221 12368999999999999999999655544321 222 3567999999999999
Q ss_pred eeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 004042 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (777)
Q Consensus 537 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (777)
+|++++++++|++|.+.++||.||+.++..++++++.
T Consensus 106 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 142 (284)
T 2a5s_A 106 AVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------- 142 (284)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC-------------------------------------------
T ss_pred cCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999999876
Q ss_pred CCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhC-----
Q 004042 617 GPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS----- 691 (777)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~----- 691 (777)
++++++||...
T Consensus 143 ----------------------------------------------------------------~~~~~~dl~~~~~~~l 158 (284)
T 2a5s_A 143 ----------------------------------------------------------------QVTGLSDKKFQRPHDY 158 (284)
T ss_dssp ----------------------------------------------------------------CCCSTTSHHHHSGGGS
T ss_pred ----------------------------------------------------------------ccccccccccCChhHc
Confidence 44555555422
Q ss_pred --CCCeEEeeCchHHHHHHhhhcccccccccc--CCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC--CCeEEec-
Q 004042 692 --DDPIGYQEGSFAEYYLSQELNISKSRLVAL--RTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVG- 764 (777)
Q Consensus 692 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~--~~l~~~~- 764 (777)
+++||+..+++...++.+.......++..+ .+.++++++|++ |++||++.|...+.|+++++ |++.+++
T Consensus 159 ~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~ 234 (284)
T 2a5s_A 159 SPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVTIGS 234 (284)
T ss_dssp SSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEEEEC
T ss_pred CCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEEeCC
Confidence 668998876666666643211101134455 799999999999 99999999999999999875 8898885
Q ss_pred -ccccccceEEEe
Q 004042 765 -QEFTKSGWGFVS 776 (777)
Q Consensus 765 -~~~~~~~~g~~~ 776 (777)
..+...+||||+
T Consensus 235 ~~~~~~~~~~~a~ 247 (284)
T 2a5s_A 235 GYIFATTGYGIAL 247 (284)
T ss_dssp CCGGGCEEECCEE
T ss_pred ccccccCceEEEe
Confidence 578888899886
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.82 E-value=4.5e-20 Score=187.99 Aligned_cols=195 Identities=20% Similarity=0.388 Sum_probs=162.3
Q ss_pred CceeEEeecCCCcccceeeeccC------CcceeeeeHHHHHHHHHHCCCeecEEEEecC-CCCC---CCChhHHHHHHh
Q 004042 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGHK---NPSYTQLVDSIT 533 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~~---~~~~~~~~~~l~ 533 (777)
+++|+|++...|| |.+.++. ++.+.||++||++++++++|+++++...+.+ .|.. +.+|.+++.+|.
T Consensus 3 ~~~l~v~~~~~~P---~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTILEEP---YVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECCBTT---TBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEecCCC---eEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 5789999987655 4444332 5889999999999999999999777665532 2221 458999999999
Q ss_pred cCceeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 004042 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (777)
Q Consensus 534 ~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~ 613 (777)
+|++|++++++++|++|.+.++||.||+..+..++++++.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~---------------------------------------- 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT---------------------------------------- 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS----------------------------------------
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc----------------------------------------
Confidence 9999999999999999999999999999999999998876
Q ss_pred CCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCC
Q 004042 614 EFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 693 (777)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~ 693 (777)
+|++++||. ++
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (259)
T 3g3k_A 120 -------------------------------------------------------------------PIDSADDLA--KQ 130 (259)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------cccCHHHhc--cC
Confidence 688999999 66
Q ss_pred C---eEEeeCchHHHHHHhhhccc-----------cccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCC
Q 004042 694 P---IGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCS 759 (777)
Q Consensus 694 ~---i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~ 759 (777)
+ +|+..++....++.+. +.. ...+..+++.++++++|.+ |+ ||++.+...+.|++++.|+
T Consensus 131 ~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~~~~ 204 (259)
T 3g3k_A 131 TKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNCN 204 (259)
T ss_dssp SSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHHCTT
T ss_pred CCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcCCce
Confidence 5 8989988888888542 211 1123557899999999999 88 9999999999999998999
Q ss_pred eEEecccccccceEEEe
Q 004042 760 FRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 760 l~~~~~~~~~~~~g~~~ 776 (777)
+++++..+...+|+|||
T Consensus 205 l~~~~~~~~~~~~~~a~ 221 (259)
T 3g3k_A 205 LTQIGGLIDSKGYGVGT 221 (259)
T ss_dssp EEEESSCSSCEEECCEE
T ss_pred EEEecccceeeeEEEEE
Confidence 99999999989999886
No 43
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.81 E-value=6.7e-20 Score=184.72 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=159.0
Q ss_pred CceeEEeecCCCcccceeee--ccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 464 GKLLKIGVPNRASYREFVSK--VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~--~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
.++|+||+.. .|+||.+. .++++.+.||++||++++++++|+++++.. ..|..++..|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~---------~~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILS---------MSFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEE---------CCGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEec---------ccHHHHHHHHHcCCCCccc
Confidence 3579999965 56777664 245688999999999999999999965544 2499999999999999999
Q ss_pred eeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCccc
Q 004042 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (777)
Q Consensus 542 ~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (777)
+++++|++|.+.++||.||+..+..+++++...
T Consensus 80 ~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~----------------------------------------------- 112 (243)
T 4h5g_A 80 AGISATDERKEVFDFSIPYYENKISFLVHKADV----------------------------------------------- 112 (243)
T ss_dssp SSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT-----------------------------------------------
T ss_pred ccccCChhHccEEEccCccccCccccccccccc-----------------------------------------------
Confidence 999999999999999999999999999988762
Q ss_pred chhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCc
Q 004042 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~ 701 (777)
..+++++||. |++||+..|+
T Consensus 113 ----------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~ 132 (243)
T 4h5g_A 113 ----------------------------------------------------------EKYKDLTSLE--SANIAAQKGT 132 (243)
T ss_dssp ----------------------------------------------------------TTCCSHHHHH--TSEEEEETTS
T ss_pred ----------------------------------------------------------ccccccccCC--CCEEEecCCc
Confidence 4788999999 9999999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEe---cccccccceEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV---GQEFTKSGWGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~---~~~~~~~~~g~~~ 776 (777)
..+.++.+ ..+..++..+++.++++++|.+ |++|+++.|...+.++++++.++... ........|+|||
T Consensus 133 ~~~~~l~~--~~~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 204 (243)
T 4h5g_A 133 VPESMVKE--QLPKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVAL 204 (243)
T ss_dssp HHHHHHHH--HCTTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEE
T ss_pred HHHHHHHH--hcccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEE
Confidence 99998843 3344678889999999999999 99999999999999988887765543 2444566788776
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.80 E-value=1.2e-19 Score=182.87 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=154.8
Q ss_pred CCCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 462 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
++.++|+||+.. .|+||.+.++ ++.+.||++||+++++++| |+++++.. ..|.+++..|.+|++|++
T Consensus 6 ~~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~~~~---------~~~~~~~~~l~~g~~D~~ 73 (243)
T 4gvo_A 6 QKVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFKFKT---------MDFSNLLVSLGAGKVDIV 73 (243)
T ss_dssp --CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEEEEE---------CCGGGHHHHHHTTSCSEE
T ss_pred ccCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHCCCCCEe
Confidence 356789999975 5778888764 6789999999999999998 88865554 249999999999999999
Q ss_pred EeeEEEeecccceeeecccccccceEEEE-eccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCc
Q 004042 541 VGDITIVTNRTKIVDFSQPYAASGLVVVV-PFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP 619 (777)
Q Consensus 541 ~~~~~~t~~r~~~~dfs~p~~~~~~~~~v-~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (777)
++++++|++|.+.++||.|++.....+++ ++..
T Consensus 74 ~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~---------------------------------------------- 107 (243)
T 4gvo_A 74 AHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN---------------------------------------------- 107 (243)
T ss_dssp CSCCBCCHHHHHHSEECSSCCEECCEEEEEETTC----------------------------------------------
T ss_pred cccCCCCHHHhhhhhhhhhhcccccceEEEeccc----------------------------------------------
Confidence 99999999999999999998776655544 4444
Q ss_pred ccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEee
Q 004042 620 KRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQE 699 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~ 699 (777)
..|++++||. |++||+..
T Consensus 108 ------------------------------------------------------------~~~~~~~dL~--g~~v~v~~ 125 (243)
T 4gvo_A 108 ------------------------------------------------------------NSINSTKDLA--GKRVITSA 125 (243)
T ss_dssp ------------------------------------------------------------CSCSSGGGGT--TCEEEECT
T ss_pred ------------------------------------------------------------cccCchHHhc--CCeEEEec
Confidence 5889999999 99999999
Q ss_pred CchHHHHHHhhhccc---cccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC-CeEEecccccccceEEE
Q 004042 700 GSFAEYYLSQELNIS---KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC-SFRIVGQEFTKSGWGFV 775 (777)
Q Consensus 700 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~g~~ 775 (777)
|+..+.++++..... ....+.+.+.++++++|.+ |++||++.+...+.|+.++.. ++.+++..+....+++|
T Consensus 126 gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (243)
T 4gvo_A 126 TSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFM 201 (243)
T ss_dssp TCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCE
T ss_pred CchHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEE
Confidence 998887775322111 1223456788899999999 999999999999999888754 68888888888888888
Q ss_pred e
Q 004042 776 S 776 (777)
Q Consensus 776 ~ 776 (777)
|
T Consensus 202 ~ 202 (243)
T 4gvo_A 202 L 202 (243)
T ss_dssp E
T ss_pred E
Confidence 6
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.79 E-value=1e-18 Score=175.30 Aligned_cols=185 Identities=18% Similarity=0.296 Sum_probs=161.3
Q ss_pred ceeEEeecCCCcccceeee-ccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 465 KLLKIGVPNRASYREFVSK-VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~-~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
++|+|++.. .|+||.+. + .++...|+++|+++.+++++|+++++... .|..++..+.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSG-NNSSLYGFDIDLMQEICRRLHATCTFEAY---------IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCC-TTSCCBSHHHHHHHHHHHHTTCEEEEEEE---------CGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeC-CCCCEeeehHHHHHHHHHHhCCceEEEEc---------CHHHHHHHHhCCCCCEEEEc
Confidence 679999985 56778776 4 36789999999999999999999666653 39999999999999999989
Q ss_pred EEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccch
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (777)
++.+++|.+.++||.||+.....+++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998877
Q ss_pred hhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchH
Q 004042 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (777)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~ 703 (777)
+|++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 589999999 999999999987
Q ss_pred HHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--------CeEEecccc-cccceEE
Q 004042 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--------SFRIVGQEF-TKSGWGF 774 (777)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~g~ 774 (777)
..++.+. .+..++..+.+.++++++|.+ |++||++.+...+.|+++++. ++++++..+ ...++++
T Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (237)
T 3kzg_A 122 ARQVLSE--NRNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSI 195 (237)
T ss_dssp HHHHHHT--CSSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCC
T ss_pred HHHHHHh--CCCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEE
Confidence 7777432 233467778999999999999 999999999999999999866 799998888 7888888
Q ss_pred Ee
Q 004042 775 VS 776 (777)
Q Consensus 775 ~~ 776 (777)
++
T Consensus 196 ~~ 197 (237)
T 3kzg_A 196 MA 197 (237)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 46
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.77 E-value=3e-18 Score=173.23 Aligned_cols=188 Identities=22% Similarity=0.397 Sum_probs=161.5
Q ss_pred CCCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 462 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
...++|+|++.. .|+||.+. + ++...|+++|+++.+++++|+++++... .|..++..+.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFK-Q-GDKYVGFDLDLWAEIAKGAGWTYKIQPM---------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEE-E-TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEe-c-CCeEEEEhHHHHHHHHHHcCCceEEEec---------CHHHHHHHHHCCCCCEEE
Confidence 356789999983 45666665 2 5789999999999999999999666653 399999999999999999
Q ss_pred eeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCccc
Q 004042 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (777)
Q Consensus 542 ~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (777)
+++..+++|.+.++||.||+.....+++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 89999999999999999999999999998877
Q ss_pred chhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCc
Q 004042 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~ 701 (777)
+.|++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 4789999999 9999999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccccccceEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~g~~~ 776 (777)
....++.+. .+..++..+++.++++++|.+ |++|+++.+...+.|++++.. ++++++..+....+++++
T Consensus 140 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (249)
T 4f3p_A 140 ATIDWIKAH--LKPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGF 210 (249)
T ss_dssp HHHHHHHHH--CCCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEE
T ss_pred hHHHHHHhc--CCCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEE
Confidence 999998542 234567778999999999999 999999999999999998865 588888888888898886
No 47
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.76 E-value=1.1e-17 Score=170.15 Aligned_cols=191 Identities=18% Similarity=0.278 Sum_probs=160.2
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .|..++..+.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLNITEY---------AWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCCCEEEE
Confidence 35789999974 4667777653 5789999999999999999999665542 5999999999999999999
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
+++.+++|.+.++||.||+..+..+++++++.
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 99999999999999999999999999988761
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
..|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 3799999999 99999999999
Q ss_pred HHHHHHhhhcc---cc-ccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC-CCCeEEecccccccceEEEe
Q 004042 703 AEYYLSQELNI---SK-SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS-QCSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~-~~~l~~~~~~~~~~~~g~~~ 776 (777)
.+.++.+.... +. .++..+++.++++++|.+ |++||++.+...+.+++++ ..++..........+|+||+
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAF 222 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEE
Confidence 99888543221 11 467778999999999999 9999999999999888766 45777777666778888886
No 48
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.75 E-value=4.3e-18 Score=171.65 Aligned_cols=190 Identities=18% Similarity=0.287 Sum_probs=162.7
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .++||.+.++ ++...|+++|+++.+++++|+++++... .|..++.++.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEec
Confidence 4789999983 5667777654 6789999999999999999999665542 49999999999999998888
Q ss_pred EEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccch
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (777)
+..+++|.+.++||.||+.....+++++...
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 102 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------- 102 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTT-------------------------------------------------
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcc-------------------------------------------------
Confidence 9999999999999999999999999998851
Q ss_pred hhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchH
Q 004042 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (777)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~ 703 (777)
..|++++||...|++||+.+|+..
T Consensus 103 --------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 103 --------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVSA 126 (245)
T ss_dssp --------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSHH
T ss_pred --------------------------------------------------------cccCCHHHhccCCcEEEEeCCcHH
Confidence 378999999988889999999999
Q ss_pred HHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC--CCeEEecccccccceEEEe
Q 004042 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~g~~~ 776 (777)
..++.+. .+..++..+++.++++++|.+ |++|+++.+...+.+++++. ..+..++..+....+++++
T Consensus 127 ~~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (245)
T 3k4u_A 127 EYAAKRL--FKNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAI 195 (245)
T ss_dssp HHHHHHH--CSSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEE
T ss_pred HHHHHhh--CCcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEE
Confidence 9988532 334567788999999999999 99999999999999987764 4688888888888888876
No 49
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.75 E-value=2.1e-18 Score=173.14 Aligned_cols=191 Identities=16% Similarity=0.238 Sum_probs=162.2
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|+|++.. .++||.+.++ ++...|+++|+++.+++++|+++++... .|..++..|.+|++|++++
T Consensus 13 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 80 (239)
T 3kbr_A 13 ESGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMS 80 (239)
T ss_dssp HHTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECS
T ss_pred hCCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEe
Confidence 35789999964 5677777654 6789999999999999999999666543 4999999999999999988
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
++..+++|.+.++||.||+.....+++++.+.
T Consensus 81 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 112 (239)
T 3kbr_A 81 GISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------ 112 (239)
T ss_dssp SCBCCHHHHTTCEECSCSEEECEEEEEEGGGG------------------------------------------------
T ss_pred CCcCCHHHcCccccchHHhccCcEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999988761
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
..|++++||...|++||+..|+.
T Consensus 113 ---------------------------------------------------------~~i~~~~dL~~~g~~v~~~~g~~ 135 (239)
T 3kbr_A 113 ---------------------------------------------------------ARFQTLEQIDQPGVTAIVNPGGT 135 (239)
T ss_dssp ---------------------------------------------------------GGGSSHHHHSSTTCEEEECTTSH
T ss_pred ---------------------------------------------------------cccCCHHHhcCCCcEEEEcCCCc
Confidence 36889999997788999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEec--ccccccceEEEe
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG--QEFTKSGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~g~~~ 776 (777)
...++.+. .+..++..+++.++++++|.+ |++||++.+...+.|++++++++.++. .++....+++++
T Consensus 136 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T 3kbr_A 136 NEKFARAN--LKKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLL 205 (239)
T ss_dssp HHHHHHHH--CSSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEE
T ss_pred HHHHHHHh--CCCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEE
Confidence 99998532 334567778999999999999 999999999999999999888887775 446777787775
No 50
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.75 E-value=4.2e-18 Score=173.76 Aligned_cols=195 Identities=18% Similarity=0.370 Sum_probs=153.5
Q ss_pred CceeEEeecCCCcccceeeeccC------CcceeeeeHHHHHHHHHHCCCeecEEEEec---CCCCCCC-ChhHHHHHHh
Q 004042 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAF---GDGHKNP-SYTQLVDSIT 533 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~---~~~~~~~-~~~~~~~~l~ 533 (777)
+++|+|++... +||.+.++. ++.+.|+++|+++++++++|+++++...+. +....++ .|.+++.+|.
T Consensus 3 ~~~l~v~~~~~---pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTILE---SPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEECCB---TTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEecC---CCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 46799999864 455555432 478999999999999999999966655421 1111222 6999999999
Q ss_pred cCceeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCC
Q 004042 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRIND 613 (777)
Q Consensus 534 ~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~ 613 (777)
+|++|++++++++|++|.+.++||.||+..+..+++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999888999999999999999999999999998876
Q ss_pred CCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCC
Q 004042 614 EFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDD 693 (777)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~ 693 (777)
+|++++||. |+
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 688999999 88
Q ss_pred C---eEEeeCchHHHHHHhhhccc-----------cccccccCCHHHHHHHH--hcCCCCCCceEEEecchhhHHHhhCC
Q 004042 694 P---IGYQEGSFAEYYLSQELNIS-----------KSRLVALRTPEDYAKAL--KDGPGKGGVAAVVDERPYVELFLSSQ 757 (777)
Q Consensus 694 ~---i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~~~~~~~~~a~i~~~~~~~~~~~~~ 757 (777)
+ +|+..+++...++.+. +.. ..++..+.+.++++++| .+ |+ ||++.+...+.|++++.
T Consensus 131 ~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~~ 204 (263)
T 1mqi_A 131 TEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQRK 204 (263)
T ss_dssp SSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTST
T ss_pred cCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhcC
Confidence 7 5766555555555332 111 12456778999999999 77 88 89999999999988875
Q ss_pred -CCeEEecccccccceEEEe
Q 004042 758 -CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 758 -~~l~~~~~~~~~~~~g~~~ 776 (777)
|++.+++..+....|+||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~ 224 (263)
T 1mqi_A 205 PCDTMKVGGNLDSKGYGIAT 224 (263)
T ss_dssp TCCEEEESCCSCCEEECCEE
T ss_pred CCceEEcCCcccccceEEEE
Confidence 6888888888888888876
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.75 E-value=7.6e-18 Score=169.39 Aligned_cols=184 Identities=17% Similarity=0.243 Sum_probs=159.6
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .++||.+.++ ++.+.|+++|+++.+++++|+++++... .|..++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTLDVREF---------SFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCceEEEEc---------CHHHHHHHHhCCCcCEEEec
Confidence 4689999954 5667777654 6789999999999999999998655542 49999999999999999888
Q ss_pred EEEeecccceeeeccccc--ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCccc
Q 004042 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~--~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (777)
+..+++|.+.++| .||+ .....+++++..
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 108 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE------------------------------------------------ 108 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC------------------------------------------------
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC------------------------------------------------
Confidence 9999999999999 9999 888999988765
Q ss_pred chhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCc
Q 004042 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~ 701 (777)
.|++++||. |++||+..|+
T Consensus 109 -----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~ 127 (242)
T 3del_B 109 -----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGT 127 (242)
T ss_dssp -----------------------------------------------------------CSCCCCGGG--SSCEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEEcCc
Confidence 788999999 9999999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccccc----eEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG----WGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~----~g~~~ 776 (777)
....++.+ .+..++..+++.++++++|.+ |++||++.+...+.|+++++.++++++..+.... ++|++
T Consensus 128 ~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (242)
T 3del_B 128 YQEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGV 199 (242)
T ss_dssp HHHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEE
T ss_pred HHHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEE
Confidence 99999854 334567778999999999999 9999999999999999999888988887777777 77775
No 52
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.74 E-value=1.8e-17 Score=169.37 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=159.8
Q ss_pred CCCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 462 NNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 462 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
...++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .+|..++.++.+|++|++.
T Consensus 29 ~~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~ 97 (267)
T 3mpk_A 29 ADHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG 97 (267)
T ss_dssp HHCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE
T ss_pred HhCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe
Confidence 345789999965 4678877654 5789999999999999999999655532 3699999999999999965
Q ss_pred eeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCccc
Q 004042 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (777)
Q Consensus 542 ~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (777)
+++.+++|.+.++||.||+.....+++++..
T Consensus 98 -~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------ 128 (267)
T 3mpk_A 98 -ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------ 128 (267)
T ss_dssp -EEECCGGGTTTEEECSCSEEECEEEEEESST------------------------------------------------
T ss_pred -cccCChhhhcceEechhhccCceEEEEECCC------------------------------------------------
Confidence 8999999999999999999999999999886
Q ss_pred chhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCc
Q 004042 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~ 701 (777)
+.|++++||. |++||+..|+
T Consensus 129 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 148 (267)
T 3mpk_A 129 ----------------------------------------------------------DAPVDADHLD--GRTVALVRNS 148 (267)
T ss_dssp ----------------------------------------------------------TSCSSGGGCT--TCEEEEETTC
T ss_pred ----------------------------------------------------------CCCCCHHHHC--CCEEEEeCCc
Confidence 4789999999 9999999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC--CCCeEEecccc-cccceEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS--QCSFRIVGQEF-TKSGWGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~g~~~ 776 (777)
....++.+ ..+..++..+++.++++++|.+ |++||++.+...+.|++++ ..++++++... ....++|++
T Consensus 149 ~~~~~l~~--~~~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (267)
T 3mpk_A 149 AAIPLLQR--RYPQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALAT 220 (267)
T ss_dssp THHHHHHH--HCTTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEE
T ss_pred hhHHHHHH--hCCCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEE
Confidence 99999853 2334577788999999999999 9999999999999999887 45688877533 466777775
No 53
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.74 E-value=8.5e-18 Score=171.96 Aligned_cols=189 Identities=17% Similarity=0.337 Sum_probs=161.3
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .|..++..+.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEe
Confidence 35789999975 5667777654 6789999999999999999998655542 4999999999999999988
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
++..+++|.+.++||.||+.....+++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998776
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
.|++++||. |++||+..|+.
T Consensus 118 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 137 (268)
T 3hv1_A 118 ----------------------------------------------------------GIDSVAGMA--GKTLGAQAGSS 137 (268)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TCCEEEETTCH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEeCCc
Confidence 788999998 99999999999
Q ss_pred HHHHHHhhhc-----cccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC---CCeEEecccccccceEE
Q 004042 703 AEYYLSQELN-----ISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQEFTKSGWGF 774 (777)
Q Consensus 703 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~---~~l~~~~~~~~~~~~g~ 774 (777)
...++..... .+..++..+++.++++++|.+ |++||++.+...+.|++++. +++++++..+...++++
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 213 (268)
T 3hv1_A 138 GYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAV 213 (268)
T ss_dssp HHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECC
T ss_pred hHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEE
Confidence 9988853211 122456678899999999999 99999999999999998875 56888888888888888
Q ss_pred Ee
Q 004042 775 VS 776 (777)
Q Consensus 775 ~~ 776 (777)
++
T Consensus 214 ~~ 215 (268)
T 3hv1_A 214 GA 215 (268)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.74 E-value=1.9e-17 Score=164.48 Aligned_cols=182 Identities=23% Similarity=0.395 Sum_probs=151.9
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .|..++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISNQ---------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEEC---------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEeC---------CHHHHHHHHhCCCCCEEEecC
Confidence 578999975 4667777654 5789999999999999999999666542 499999999999999998889
Q ss_pred EEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchh
Q 004042 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (777)
Q Consensus 545 ~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (777)
..+++|.+.++||.|++.....+++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998887
Q ss_pred hHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchHH
Q 004042 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (777)
Q Consensus 625 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~~ 704 (777)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 3348999998 9999999999999
Q ss_pred HHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccccccc
Q 004042 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSG 771 (777)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 771 (777)
.++.+.... ..++..+.+.++++++|.+ |++||++.+...+.+++++.. ++++++..+....
T Consensus 122 ~~l~~~~~~-~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (227)
T 3tql_A 122 SYLQDSFGN-SITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPN 185 (227)
T ss_dssp HHHHHHHGG-GSEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGG
T ss_pred HHHHHhccc-cceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCcc
Confidence 998543221 1467778999999999999 999999999999999988765 3888776554443
No 55
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.73 E-value=7.8e-18 Score=168.21 Aligned_cols=179 Identities=17% Similarity=0.326 Sum_probs=152.4
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .|..++.++.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeC
Confidence 4679999874 5677777654 5789999999999999999999666552 49999999999999999989
Q ss_pred EEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccch
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (777)
++.|++|.+.++||.||+.....+++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999987643
Q ss_pred hhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchH
Q 004042 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFA 703 (777)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~ 703 (777)
++||. | +||+.+|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 56777 8 9999999999
Q ss_pred HHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC-CCeEEecc-cccccceEEEe
Q 004042 704 EYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ-CSFRIVGQ-EFTKSGWGFVS 776 (777)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~g~~~ 776 (777)
..++.+. ..++..+++.++++++|.+ |++||++.+...+.|++++. +++++++. .+...+++||+
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGL 184 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEE
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEE
Confidence 9999543 3467778999999999999 99999999999999999876 68888875 46677888886
No 56
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.73 E-value=3e-17 Score=163.79 Aligned_cols=187 Identities=19% Similarity=0.316 Sum_probs=156.5
Q ss_pred CceeEEeecCCCcccceeeec-cCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 464 GKLLKIGVPNRASYREFVSKV-RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~-~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
.++|+|++.. ++||.+.+ +.++.+.|+++|+++.+++++|+++++... +.|..++..+.+|++|++++
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEecC---CCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEEe
Confidence 3579999974 55666651 235789999999999999999998655543 26999999999999999998
Q ss_pred eEEEeeccc--ceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcc
Q 004042 543 DITIVTNRT--KIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (777)
Q Consensus 543 ~~~~t~~r~--~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (777)
++..+.+|. +.++||.||+.....+++++...
T Consensus 72 ~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 105 (233)
T 1ii5_A 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT---------------------------------------------- 105 (233)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT----------------------------------------------
T ss_pred eeecCccccccceeEEccceeecCeEEEEECCCC----------------------------------------------
Confidence 899999999 99999999999999999988771
Q ss_pred cchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeC
Q 004042 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~ 700 (777)
..|++++||. |++||+..+
T Consensus 106 -----------------------------------------------------------~~i~~~~dL~--g~~v~~~~g 124 (233)
T 1ii5_A 106 -----------------------------------------------------------PLFRSVGDLK--NKEVAVVRD 124 (233)
T ss_dssp -----------------------------------------------------------TTCSSGGGGT--TCEEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCeEEEECC
Confidence 2789999999 999999999
Q ss_pred chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccccccceEEEe
Q 004042 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~g~~~ 776 (777)
+....++.+. ..++..+.+.++++++|.+ |++||++.+...+.|++++.. ++++++..+....+++++
T Consensus 125 ~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (233)
T 1ii5_A 125 TTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVL 194 (233)
T ss_dssp SHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEE
T ss_pred ccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEE
Confidence 9999988542 2356678899999999999 999999999999999888764 788888777778888876
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.73 E-value=4.1e-17 Score=162.93 Aligned_cols=187 Identities=16% Similarity=0.302 Sum_probs=160.0
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|+|++.. .++||.+.++ ++...|+++|+++.+++++|.++++... .|..++..+.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 35789999954 5677877654 5789999999999999999999766643 49999999999999994 6
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
++..+++|.+.++||.|++.....+++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 7899999999999999999999999998887
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
+.|++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 4589999998 99999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC--CCeEEecccccccceEEEe
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~g~~~ 776 (777)
...++.+ .....++..+++.++++++|.+ |++|+++.+...+.|++++. .++.+++..+....+++++
T Consensus 128 ~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (234)
T 3h7m_A 128 MHEYLAE--RGYGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAV 197 (234)
T ss_dssp HHHHHHT--TTCGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHh--cCCCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEE
Confidence 9999843 2233567778999999999999 99999999999999988764 4788888888888888876
No 58
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.72 E-value=2.9e-17 Score=167.58 Aligned_cols=198 Identities=23% Similarity=0.327 Sum_probs=148.8
Q ss_pred CCceeEEeecCCCcccceeeecc---C-CcceeeeeHHHHHHHHHHCCCeecEEEEecC-CCC--CCCChhHHHHHHhcC
Q 004042 463 NGKLLKIGVPNRASYREFVSKVR---G-SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH--KNPSYTQLVDSITTG 535 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~---~-~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~--~~~~~~~~~~~l~~g 535 (777)
+|++|+|++...|| |.+.++ | .+.+.|+++|+++++++++|+++++...+.+ .|. .+..|.+++.+|.+|
T Consensus 1 ~~~~l~v~~~~~pP---~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLEEP---FVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCBTT---TBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEeccCC---eEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 36889999987655 444432 1 1689999999999999999999666543321 121 245799999999999
Q ss_pred ceeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCC
Q 004042 536 VFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEF 615 (777)
Q Consensus 536 ~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~ 615 (777)
++|++++++++|++|.+.++||.||+..+..++++++.
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999888999999999999999999999999998866
Q ss_pred CCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhC-CCC
Q 004042 616 RGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS-DDP 694 (777)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~-~~~ 694 (777)
+|++++||... +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 68899999810 112
Q ss_pred eEEeeCchHHHHHHhhhcccc------------------ccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC
Q 004042 695 IGYQEGSFAEYYLSQELNISK------------------SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS 756 (777)
Q Consensus 695 i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~ 756 (777)
.|...++....++.+ .+... .++..+.+.++++++|.+ |++ |++.+...+.|++++
T Consensus 131 ~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~~~~ 204 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRM-KGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYVAIN 204 (265)
T ss_dssp EECBTTSHHHHHHHH-HHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHh-cCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHHHhc
Confidence 344444555666643 22211 113457899999999999 999 999999999998865
Q ss_pred --CCCeEEecccccccceEEEe
Q 004042 757 --QCSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 757 --~~~l~~~~~~~~~~~~g~~~ 776 (777)
.|++++++..+...+|+||+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~ 226 (265)
T 2v3u_A 205 DPDCSFYTVGNTVADRGYGIAL 226 (265)
T ss_dssp CTTCCEEEEC---CCEEECCEE
T ss_pred CCCccEEEeccccCCcceEEEE
Confidence 47899999888888888886
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.72 E-value=5e-17 Score=161.24 Aligned_cols=185 Identities=22% Similarity=0.390 Sum_probs=157.3
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
++|+|++.. .++||.+.++ +...|+++|+++.+++++|+++++... .|..++..+.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEET--TEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEecC--CcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 468999873 5667777653 689999999999999999998666543 499999999999999999888
Q ss_pred EEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchh
Q 004042 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (777)
Q Consensus 545 ~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (777)
..+++|.+.++|+.|++.....+++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 89999999999999999999999998877
Q ss_pred hHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchHH
Q 004042 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (777)
Q Consensus 625 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~~ 704 (777)
+.|++++||. |++||+..++...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 4688999998 9999999999998
Q ss_pred HHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC--CCeEEecccccccceEEEe
Q 004042 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ--CSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~g~~~ 776 (777)
.++.+. .+..++..+.+.++++++|.+ |++|+++.+...+.+++++. +++++++..+....+++++
T Consensus 122 ~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 189 (226)
T 1wdn_A 122 DYAKAN--IKTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAF 189 (226)
T ss_dssp HHHHHH--CCCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHh--CCCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEE
Confidence 888543 223456678899999999999 99999999999999988876 4788888777777888876
No 60
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.71 E-value=5.3e-17 Score=162.76 Aligned_cols=188 Identities=21% Similarity=0.339 Sum_probs=153.2
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++.. ..|..++..|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWVA---------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEEe---------CCHHHHHHHHhCCCCCEEEEC
Confidence 4679999853 5667777654 578999999999999999999966654 259999999999999999888
Q ss_pred EEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccch
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQV 623 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (777)
++.+++|.+.++||.||+.....+++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 899999999999999999999999998877
Q ss_pred hhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCC-CChhhhhhCCCCeEEeeCch
Q 004042 624 ITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPI-NGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i-~s~~dl~~~~~~i~~~~~~~ 702 (777)
++ .+++||. |++||+..|+.
T Consensus 101 ---------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~ 121 (239)
T 1lst_A 101 ---------------------------------------------------------PIQPTLESLK--GKHVGVLQGST 121 (239)
T ss_dssp ---------------------------------------------------------CCCSSHHHHT--TCEEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEcCcc
Confidence 33 5899998 99999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHH-HhhCC--CCeEEeccccccc-----ceEE
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL-FLSSQ--CSFRIVGQEFTKS-----GWGF 774 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~-~~~~~--~~l~~~~~~~~~~-----~~g~ 774 (777)
...++.+.......++..+++.++++++|.+ |++|+++.+...+.+ ++++. +++++++..+... .+++
T Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (239)
T 1lst_A 122 QEAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGV 197 (239)
T ss_dssp HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCC
T ss_pred HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEE
Confidence 8888854332223456678999999999999 999999999988864 45543 4688887666533 5666
Q ss_pred Ee
Q 004042 775 VS 776 (777)
Q Consensus 775 ~~ 776 (777)
++
T Consensus 198 ~~ 199 (239)
T 1lst_A 198 GL 199 (239)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 61
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.70 E-value=5.9e-17 Score=163.19 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=153.9
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCC-CeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLP-YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
.++|+|++.. .|+||.+. + ++...|+++|+++.+++++| +++++... .|..++..+.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEec
Confidence 4679999975 45567663 3 57899999999999999999 98665543 4999999999999999988
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
+++.+++|.+.++||.||+.....+++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999999855
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
.+|++++||. |++||+..|+.
T Consensus 105 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 125 (246)
T 4eq9_A 105 ---------------------------------------------------------SSIKSLDDIG--GKSTEVVQATT 125 (246)
T ss_dssp ---------------------------------------------------------CSCSSGGGCT--TCEEEECTTCH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcc
Confidence 4789999999 99999999999
Q ss_pred HHHHHHhhh-cccc--cccc-ccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccccccc-eEEE
Q 004042 703 AEYYLSQEL-NISK--SRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSG-WGFV 775 (777)
Q Consensus 703 ~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~g~~ 775 (777)
...++.+.. ..+. .++. ...+.++++++|.+ |++|+++.+...+.|++++.. ++++++....... ++++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (246)
T 4eq9_A 126 SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPL 201 (246)
T ss_dssp HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCE
T ss_pred HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEE
Confidence 988885411 1111 2232 23589999999999 999999999999999988754 6888887666554 6665
Q ss_pred e
Q 004042 776 S 776 (777)
Q Consensus 776 ~ 776 (777)
+
T Consensus 202 ~ 202 (246)
T 4eq9_A 202 L 202 (246)
T ss_dssp E
T ss_pred E
Confidence 4
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.70 E-value=1.6e-16 Score=158.03 Aligned_cols=185 Identities=22% Similarity=0.353 Sum_probs=153.7
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .|+||.+.++ ++...|+++|+++.+++++|+++++... .|..++..+.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEec
Confidence 4679999963 5667777553 5789999999999999999999665542 49999999999999999878
Q ss_pred EEEeecccceeeeccccccc-ceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 544 ITIVTNRTKIVDFSQPYAAS-GLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~-~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
+..+++|.+.++|+.|++.. ...+++++..
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------------- 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS-------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC-------------------------------------------------
Confidence 88999999999999999999 8888876532
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
+++++||. |++||+..++.
T Consensus 104 -----------------------------------------------------------~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 104 -----------------------------------------------------------YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp -----------------------------------------------------------CCSTGGGT--TCEEEEETTSH
T ss_pred -----------------------------------------------------------CCCHHHHC--CCEEEEecCCc
Confidence 67899998 99999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccc-----cceEEEe
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTK-----SGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~g~~~ 776 (777)
...++.+. .+..++..+.+.++++++|.+ |++|+++.+...+.++++++.++++++..+.. ..+++++
T Consensus 123 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (229)
T 2y7i_A 123 HQRYLQDK--QQAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAV 195 (229)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEE
T ss_pred HHHHHHHh--CCCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEE
Confidence 98888532 233466778899999999999 99999999999999999887789888765533 3566654
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.68 E-value=3.7e-17 Score=167.48 Aligned_cols=188 Identities=16% Similarity=0.220 Sum_probs=153.1
Q ss_pred CCCceeEEeecCCCcccceeeeccCC--cceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeE
Q 004042 462 NNGKLLKIGVPNRASYREFVSKVRGS--DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDA 539 (777)
Q Consensus 462 ~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di 539 (777)
...++|+|++.. .|+||.+.++++ +...|+++|+++.+++++|+++++... .|..++..+.+|++|+
T Consensus 18 ~~~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~ 86 (271)
T 2iee_A 18 KDKGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDA 86 (271)
T ss_dssp HHHTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSE
T ss_pred ccCCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCE
Confidence 345789999973 566777764421 789999999999999999999666553 4999999999999999
Q ss_pred EEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCc
Q 004042 540 VVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP 619 (777)
Q Consensus 540 ~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (777)
++++++.+++|.+.++||.||+.....+++++...
T Consensus 87 ~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~--------------------------------------------- 121 (271)
T 2iee_A 87 AANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL--------------------------------------------- 121 (271)
T ss_dssp ECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG---------------------------------------------
T ss_pred EEeCCcCChhhccceEEeecceeCCeEEEEECCCC---------------------------------------------
Confidence 98888899999999999999999999999987761
Q ss_pred ccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEee
Q 004042 620 KRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQE 699 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~ 699 (777)
..|++++||. |++||+..
T Consensus 122 ------------------------------------------------------------~~i~~~~dL~--g~~i~v~~ 139 (271)
T 2iee_A 122 ------------------------------------------------------------SGIKTLKDLK--GKKAAGAA 139 (271)
T ss_dssp ------------------------------------------------------------GGCSSGGGGT--TCEEESCT
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCEEEEeC
Confidence 1688999998 99999999
Q ss_pred CchHHHHHHhhhccccccccccCCHHHH--HHHHhcCCCCCCceEEEecchhhHHHhh-CCC--CeEEe-cccccccceE
Q 004042 700 GSFAEYYLSQELNISKSRLVALRTPEDY--AKALKDGPGKGGVAAVVDERPYVELFLS-SQC--SFRIV-GQEFTKSGWG 773 (777)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~a~i~~~~~~~~~~~-~~~--~l~~~-~~~~~~~~~g 773 (777)
|+....++++ .+. ++..+++.+++ +++|.+ |++| ++.+...+.++++ ++. +++++ +..+....++
T Consensus 140 g~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (271)
T 2iee_A 140 TTVYMEVARK-YGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQA 210 (271)
T ss_dssp TSHHHHHHHH-TTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEEC
T ss_pred CccHHHHHHH-cCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEE
Confidence 9999888843 222 66778888888 999999 9999 7777777766665 443 68887 6777777777
Q ss_pred EEe
Q 004042 774 FVS 776 (777)
Q Consensus 774 ~~~ 776 (777)
++|
T Consensus 211 ~~~ 213 (271)
T 2iee_A 211 LVM 213 (271)
T ss_dssp CEE
T ss_pred EEE
Confidence 775
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.67 E-value=2.7e-16 Score=159.64 Aligned_cols=189 Identities=16% Similarity=0.200 Sum_probs=154.4
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCe-ecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
.++|+|++.. ++||.+.++ ++...|+++|+++.+++++|++ +++... .|..++..+.+|++|++++
T Consensus 12 ~~~l~v~~~~---~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIAN---EPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEECC---CTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcCC---CCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 4679999963 556666543 5789999999999999999997 666542 4999999999999999987
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
++..+++|.+.++||.||+.....+++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 88999999999999999999999999988771
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhC-CCCeEEeeCc
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKS-DDPIGYQEGS 701 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~-~~~i~~~~~~ 701 (777)
..|++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 268999999976 8899999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEeccccc---ccceEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFT---KSGWGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~---~~~~g~~~ 776 (777)
....++.+ .+.+..++..+++.++++++|.+ |++|+++.+...+.+++++.. .+..+.. +. ...|++++
T Consensus 134 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (257)
T 2q88_A 134 TEEKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAF 207 (257)
T ss_dssp HHHHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEE
T ss_pred ccHHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEE
Confidence 99998853 33444567788999999999999 999999999999999887754 4655543 22 23555554
No 65
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.67 E-value=4.1e-16 Score=159.21 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=159.4
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++++|++.. .++||.+.++ ++...|+++|+++.+++++|.++++... .|..++..+.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLEVREF---------AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEEEEec---------CHHHHHHHHhCCCccEEeec
Confidence 4679999864 4567776644 6789999999999999999988665542 49999999999999999888
Q ss_pred EEEeecccceeeeccccc--ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCccc
Q 004042 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKR 621 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~--~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (777)
+..+++|.+.++| .||+ .....+++++..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 128 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------ 128 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETT------------------------------------------------
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCC------------------------------------------------
Confidence 9999999999999 9999 899999998875
Q ss_pred chhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCc
Q 004042 622 QVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGS 701 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~ 701 (777)
..|++++||. |++||+..|+
T Consensus 129 ----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~ 148 (268)
T 3qax_A 129 ----------------------------------------------------------LETPVLPLTQ--YSSVAVQTGT 148 (268)
T ss_dssp ----------------------------------------------------------SCSCCCCGGG--SSCEEEETTS
T ss_pred ----------------------------------------------------------CCCCCHHHhC--CCEEEEecCc
Confidence 4889999999 9999999999
Q ss_pred hHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccccc----eEEEe
Q 004042 702 FAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSG----WGFVS 776 (777)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~----~g~~~ 776 (777)
....++.+ .+..++..+++.++++++|.+ |++|+++.+...+.++++++.++++++..+.... +++++
T Consensus 149 ~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T 3qax_A 149 YQEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGV 220 (268)
T ss_dssp HHHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEE
T ss_pred HHHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEE
Confidence 99998854 333466778999999999999 9999999999999999999888888888787777 88876
No 66
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.66 E-value=4.8e-16 Score=159.29 Aligned_cols=187 Identities=18% Similarity=0.308 Sum_probs=156.2
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|+|++.. .|+||.+.+ ++...|+++|+++.+++++|+++++.. . .|..++..+.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~~~--~-------~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYELKN--I-------GWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEE--C-------CHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceEEEE--C-------CHHHHHHHHhCCCCCEEEe
Confidence 45789999974 466776653 467999999999999999999865544 2 3999999999999999988
Q ss_pred eEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
++..+++|.+.++|+.|++.....+++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 8888999999999999999999999998876
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
+|++++||. |++||+..++.
T Consensus 138 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 157 (272)
T 2pvu_A 138 ----------------------------------------------------------PVKNALDLK--GKTIGVQNATT 157 (272)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEEcCch
Confidence 588999998 99999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccc--cccceEEEe
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEF--TKSGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~--~~~~~g~~~ 776 (777)
...++.+..+ ...++..+.+.++++++|.+ |++|+++.+...+.+++++.. ++++++... ....+++++
T Consensus 158 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 230 (272)
T 2pvu_A 158 GQEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIF 230 (272)
T ss_dssp HHHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEE
T ss_pred HHHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEE
Confidence 8888855433 23466778999999999999 999999999999999888765 488887653 556677665
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.65 E-value=3.4e-16 Score=155.39 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=150.3
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
++|+|++.. ++||.+. + ++...|+++|+++.+++++|+++++... +.|..++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~---~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEECC---BTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEecC---CCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 568999875 4566655 2 5679999999999999999998666553 3599999999999999998888
Q ss_pred EEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchh
Q 004042 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVI 624 (777)
Q Consensus 545 ~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (777)
..+++|.+.+.|+.|++.....+++++....
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999887610
Q ss_pred hHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchHH
Q 004042 625 TILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAE 704 (777)
Q Consensus 625 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~~ 704 (777)
...+++++||. |++||+..++...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 03788999998 9999999999988
Q ss_pred HHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEecccccccceEEEe
Q 004042 705 YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~g~~~ 776 (777)
.++.+ .+ .++..+.+.++++++|.+ |++|+++.+...+.+++++.. ++++++..+....+++++
T Consensus 125 ~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
T 2pyy_A 125 TYLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIIL 190 (228)
T ss_dssp HHHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEE
T ss_pred HHHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEE
Confidence 88853 22 256677899999999999 999999999999999888754 788887777667777765
No 68
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.65 E-value=4.7e-16 Score=161.06 Aligned_cols=186 Identities=21% Similarity=0.344 Sum_probs=158.5
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC---CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
.++|+|++.. .|+||.+.++ ++...|+.+|+++.+++++ |.++++.. . .|..++..|.+|++|++
T Consensus 54 ~~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~--~-------~~~~~~~~l~~G~~D~~ 121 (291)
T 2yjp_A 54 KGVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDKVEFVL--T-------EAANRVEYVRSGKVDLI 121 (291)
T ss_dssp HTCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGGEEEEE--C-------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCceEEEEE--c-------cHHHHHHHHhCCCeeEE
Confidence 3569999864 5677777653 5789999999999999999 98855554 2 38999999999999999
Q ss_pred EeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcc
Q 004042 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (777)
Q Consensus 541 ~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (777)
++++..+.+|.+.++|+.|++.....+++++..
T Consensus 122 ~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~----------------------------------------------- 154 (291)
T 2yjp_A 122 LANFTQTPERAEAVDFADPYMKVALGVVSPKNK----------------------------------------------- 154 (291)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEECEEEEEETTS-----------------------------------------------
T ss_pred EeCCCCChHHHccceeccCeeecceEEEEeCCC-----------------------------------------------
Confidence 888888999999999999999999999998766
Q ss_pred cchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeC
Q 004042 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~ 700 (777)
.|++++||. |++||+..+
T Consensus 155 ------------------------------------------------------------~i~sl~dL~--gk~v~~~~g 172 (291)
T 2yjp_A 155 ------------------------------------------------------------PITDMAQLK--DQTLLVNKG 172 (291)
T ss_dssp ------------------------------------------------------------CCCSGGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 789999999 999999999
Q ss_pred chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccccce-EEEe
Q 004042 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW-GFVS 776 (777)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-g~~~ 776 (777)
+....++.+. .+..++..+++.++++++|.+ |++||++.+.+.+.+++++..++++++..+....| ++++
T Consensus 173 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (291)
T 2yjp_A 173 TTADAFFTKS--HPEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAV 243 (291)
T ss_dssp SHHHHHHHHH--CTTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEE
T ss_pred CcHHHHHHHh--CCCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEE
Confidence 9988888542 233456678899999999999 99999999999999999887789888887877777 7765
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.64 E-value=4.8e-16 Score=161.12 Aligned_cols=186 Identities=20% Similarity=0.281 Sum_probs=157.6
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC---CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
.++|+|++.. .++||.+.++ ++...|+++|+++.+++++ |.++++... .|..++..+.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 3579999864 5677777653 5789999999999999999 999655542 48999999999999999
Q ss_pred EeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcc
Q 004042 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (777)
Q Consensus 541 ~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (777)
++++..+.+|.+.++|+.||+.....+++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 877888999999999999999999999998765
Q ss_pred cchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeC
Q 004042 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~ 700 (777)
+|++++||. |++||+..+
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 788999999 999999999
Q ss_pred chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccccce-EEEe
Q 004042 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGW-GFVS 776 (777)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-g~~~ 776 (777)
+....++.+. .+..++..+.+.++++++|.+ |++|+++.+...+.+++++..++++++..+....| ++++
T Consensus 162 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (292)
T 1xt8_A 162 TTADAYFTQN--YPNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAV 232 (292)
T ss_dssp SHHHHHHHHH--CTTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEE
T ss_pred CcHHHHHHHh--CCCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEE
Confidence 9988888532 223456778999999999999 99999999999999999887788888877777777 7765
No 70
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.64 E-value=1.1e-15 Score=158.03 Aligned_cols=188 Identities=18% Similarity=0.244 Sum_probs=156.4
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHH----CC---CeecEEEEecCCCCCCCChhHHHHHHhcCc
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LP---YAVPYQFVAFGDGHKNPSYTQLVDSITTGV 536 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~----l~---f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 536 (777)
.++|+|++.. .++||.+.++ ++...|+++|+++.++++ +| +++ ++.+. .|..++..+.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v--~~~~~-------~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQV--KLIPI-------TSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEE--EEEEC-------CTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceE--EEEEC-------CHHHHHHHHHCCC
Confidence 4679999974 5667777654 578999999999999976 56 664 44442 4889999999999
Q ss_pred eeEEEeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 004042 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (777)
Q Consensus 537 ~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (777)
+|+++++++.+++|.+.++||.||+.....+++++..
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------- 120 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG------------------------------------------- 120 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-------------------------------------------
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC-------------------------------------------
Confidence 9999888889999999999999999999999998776
Q ss_pred CCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeE
Q 004042 617 GPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIG 696 (777)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~ 696 (777)
+|++++||. |++||
T Consensus 121 ----------------------------------------------------------------~i~sl~dL~--g~~v~ 134 (287)
T 2vha_A 121 ----------------------------------------------------------------DIKDFADLK--GKAVV 134 (287)
T ss_dssp ----------------------------------------------------------------SCCSGGGGT--TCEEE
T ss_pred ----------------------------------------------------------------CCCCHHHcC--CCEEE
Confidence 688999999 99999
Q ss_pred EeeCchHHHHHHhhhcc--ccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC---CCeEEecccccccc
Q 004042 697 YQEGSFAEYYLSQELNI--SKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ---CSFRIVGQEFTKSG 771 (777)
Q Consensus 697 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 771 (777)
+..|+....++.+.... ...++..+.+.++++++|.+ |++|+++.+...+.+++++. +++.+++..+....
T Consensus 135 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
T 2vha_A 135 VTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEA 210 (287)
T ss_dssp EETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEE
T ss_pred EeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCc
Confidence 99999888888543211 13456678999999999999 99999999999999988874 36888888888888
Q ss_pred eEEEe
Q 004042 772 WGFVS 776 (777)
Q Consensus 772 ~g~~~ 776 (777)
+++++
T Consensus 211 ~~~~~ 215 (287)
T 2vha_A 211 YGCML 215 (287)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88886
No 71
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.64 E-value=9.2e-16 Score=156.66 Aligned_cols=188 Identities=22% Similarity=0.346 Sum_probs=156.2
Q ss_pred CceeEEeecCCCcccceee---eccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 464 GKLLKIGVPNRASYREFVS---KVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~---~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
.++++|++.. .|+||.+ .+ +++...|+++|+++.+++++|.++++... .|..++..+.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVELELSPM---------SFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCceEEEEc---------CHHHHHHHHhCCCccEE
Confidence 3579999874 4566666 43 36789999999999999999998666542 49999999999999999
Q ss_pred EeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcc
Q 004042 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (777)
Q Consensus 541 ~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (777)
++++..+.+|.+.+.|+.|++.....+++++...
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 139 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL---------------------------------------------- 139 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGT----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCcc----------------------------------------------
Confidence 8889999999999999999999999999988751
Q ss_pred cchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeC
Q 004042 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~ 700 (777)
..|++++||. |++||+..|
T Consensus 140 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 140 -----------------------------------------------------------ATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp -----------------------------------------------------------TTCSSGGGGC---CEEEEETT
T ss_pred -----------------------------------------------------------ccccCHHHhC--CCeEEEecC
Confidence 3789999999 999999999
Q ss_pred chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEeccccc---ccceEEEe
Q 004042 701 SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFT---KSGWGFVS 776 (777)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~---~~~~g~~~ 776 (777)
+....++.+. .+..++..+++.++++++|.+ |++||++.+.+.+.++++++.++.+....+. ..++++++
T Consensus 159 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (269)
T 4i62_A 159 SIQETMAKDL--LQNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAM 231 (269)
T ss_dssp SHHHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEE
T ss_pred chHHHHHHHh--CCCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEE
Confidence 9998888532 233567778999999999999 9999999999999999998888777765444 55666654
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.64 E-value=9e-16 Score=158.20 Aligned_cols=184 Identities=18% Similarity=0.268 Sum_probs=156.4
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+|++.. .|+||.+.++ ++...|+.+|+++.+++++|+++++.. . .|..++..|.+|++|+++++
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~v~~~~--~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVKVEFKE--T-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCEEEEEE--C-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEE--C-------CHHHHHHHHHCCCcCEEEec
Confidence 4679999975 4778777653 578999999999999999999855544 3 39999999999999999888
Q ss_pred EEE-eecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccc
Q 004042 544 ITI-VTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQ 622 (777)
Q Consensus 544 ~~~-t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (777)
+.. +.+|.+.++|+.||+.....+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 887 899999999999999999999998876
Q ss_pred hhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCch
Q 004042 623 VITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSF 702 (777)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~ 702 (777)
+|++++||. |++||+..++.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 689999998 99999999999
Q ss_pred HHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCC--CeEEec-cccc-ccceEEEe
Q 004042 703 AEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQC--SFRIVG-QEFT-KSGWGFVS 776 (777)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~g~~~ 776 (777)
...++++ .+ .++..+.+.++++++|.+ |++|+++.+...+.+++++.. ++++++ ..+. ...++|++
T Consensus 175 ~~~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 244 (283)
T 2yln_A 175 YGEKAKA-AG---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIV 244 (283)
T ss_dssp HHHHHHH-TT---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEE
T ss_pred HHHHHHH-cC---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEE
Confidence 8888853 22 356677899999999999 999999999999999887754 488888 7777 67777775
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.55 E-value=8.3e-15 Score=148.55 Aligned_cols=187 Identities=17% Similarity=0.273 Sum_probs=151.3
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC---CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
.++|+|++.. .++||.+.+..++...|+++|+++.+++++ |.++++.. ..|..++..+.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~---------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVA---------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEE---------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEE---------cCHHHHHHHHhCCCCCEE
Confidence 3579999865 566777765335789999999999999999 98855554 248999999999999999
Q ss_pred EeeEEEeecccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcc
Q 004042 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK 620 (777)
Q Consensus 541 ~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (777)
++++..+.+|.+.++|+.|++.....+++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888899999999999999999999998766
Q ss_pred cchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeC
Q 004042 621 RQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEG 700 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~ 700 (777)
+|++++||. |++|++..+
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 678999999 999999999
Q ss_pred chHHHHHHhhhccc--cccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEecccccccceEEEe
Q 004042 701 SFAEYYLSQELNIS--KSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 701 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~ 776 (777)
+....++.+..... ..++..+++.++++++|.+ |++|+++.+...+.+++++..+ +++..+....+++++
T Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 228 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVT 228 (259)
T ss_dssp CSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEE
T ss_pred CchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEE
Confidence 88887774322111 1145678899999999999 9999999999999998877655 556666666677665
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.58 E-value=6.1e-08 Score=93.39 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=104.6
Q ss_pred cceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeec------ccceeeeccccc
Q 004042 488 DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN------RTKIVDFSQPYA 561 (777)
Q Consensus 488 ~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~------r~~~~dfs~p~~ 561 (777)
.+++|+.--|.+.+. |+++++.+.+ .|++.+..|++|++|+++.+++.+++ |...+|||.||+
T Consensus 28 ~~yeGlatgl~~~f~---gi~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yY 96 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---GIPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTY 96 (231)
T ss_dssp HHHHHHHHHHHHTTT---TSCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSS
T ss_pred hhhhHHHHHHHHHhc---CCcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCcc
Confidence 456777766655553 6775566654 49999999999999999999999999 999999999999
Q ss_pred ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCcCc
Q 004042 562 ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKEN 641 (777)
Q Consensus 562 ~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (777)
...-.++++++..
T Consensus 97 v~~h~li~~~~~~------------------------------------------------------------------- 109 (231)
T 2ozz_A 97 VGEHQLICRKGES------------------------------------------------------------------- 109 (231)
T ss_dssp SCCEEEEEETTCG-------------------------------------------------------------------
T ss_pred ccCeEEEEeCCCc-------------------------------------------------------------------
Confidence 8777888877761
Q ss_pred ccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchHHHHHHhhhcccccccccc
Q 004042 642 TVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVAL 721 (777)
Q Consensus 642 p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (777)
..| ++||+..+|.-+.++.+. .....++..+
T Consensus 110 --------------------------------------~~i----------krVGvd~gS~dq~~lt~~-~~~g~~Ve~v 140 (231)
T 2ozz_A 110 --------------------------------------GNV----------KRVGLDSRSADQKIMTDV-FFGDSDVERV 140 (231)
T ss_dssp --------------------------------------GGC----------CEEEECTTCHHHHHHHHH-HHTTSCCEEE
T ss_pred --------------------------------------ccc----------EEEEecCCChhHHHHHhh-hcCCCeEEEE
Confidence 123 689999999888888542 2233455556
Q ss_pred -CCHHHHHHHHhcCCCCCCceEEEe--cchhhH
Q 004042 722 -RTPEDYAKALKDGPGKGGVAAVVD--ERPYVE 751 (777)
Q Consensus 722 -~~~~~~~~~l~~~~~~~~~~a~i~--~~~~~~ 751 (777)
.+..+++..|++ |++||++. |.+...
T Consensus 141 e~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~ 169 (231)
T 2ozz_A 141 DLSYHESLQRIVK----GDVDAVIWNVVAENEL 169 (231)
T ss_dssp ECCHHHHHHHHHH----TSCCEEEEEC-CHHHH
T ss_pred ECCHHHHHHHHHc----CCccEEEEcCcchhhh
Confidence 889999999999 99999999 777665
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.44 E-value=1.6e-05 Score=82.36 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=137.0
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 004042 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (777)
Q Consensus 32 i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~~~ 110 (777)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++++||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5899999876434456677777777663 45555432 23567777777888888888888775 44443333
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEe--CccccchHHHHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVD--NEYGRNGVSALND 186 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~--~~~g~~~~~~~~~ 186 (777)
.....+...++|+|......+. .+.+..+.+++...++.++++|... |.++|++|... ........+.|++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3444556689999987543221 1234456677888888888988776 99999999854 3345567788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.+++.|+++....... .+..+....++++.+. ++++|+.. +...+..+++++++.|+. .+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~p-~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGKV-GKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTCT-TTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCCC-CCeEEEEeC
Confidence 9999998876433222 2245555566666543 45777654 445677789999999953 344445443
No 76
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.39 E-value=1.6e-05 Score=80.48 Aligned_cols=209 Identities=10% Similarity=0.006 Sum_probs=141.5
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcC-cEEEEcCCC-hhH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQC-STV 108 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~-v~aviGp~~-s~~ 108 (777)
++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||-... +..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4899999965 444456677777777663 56666665556778888888888898888 998886443 344
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc----CCcEEEEEEEe--CccccchHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY----GWNAVSVIFVD--NEYGRNGVS 182 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~----~w~~vaii~~~--~~~g~~~~~ 182 (777)
.......+...++|+|......+ + .+......++....++.+++++... |.++|+++... ........+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~--~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---G--DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---S--SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---C--CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 45556667778999998754332 1 1223456678888899999998777 89999999743 334556778
Q ss_pred HHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 183 ALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 183 ~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.+++.+++. |+++.....- . .+..+....+.++.+. ++++|+. .+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAPYA--G--DDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECCBC--C--SSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEecC--C--CcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 899999988 8887632221 2 2345555566666543 4555543 455567779999999998 3444555543
No 77
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.37 E-value=1.5e-05 Score=82.03 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=124.1
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
..+.+||++.+.+.++-.....|++ +.+++.|.+ .|+++.+.+.|+..++.+..+.+..+.+++|++||.... ..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-PT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-HH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-HH
Confidence 3578999984444443334445544 445555555 478999999999999999888888898889998887543 22
Q ss_pred HHHHHHhhccCCceEEecccCCCCCC------CCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeCc-cccc
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLS------SLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRN 179 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~------~~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~~-~g~~ 179 (777)
...+.. ...++|+|..+...+... ....+++....- ...+...++++.+. |.++|++|+.... .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 333333 267999998765433211 011234444432 12245566777776 9999999996532 3566
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
..+.+++.+++.|+++...... +..+....++++.. ++++|++..+.
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~------~~~~~~~~~~~l~~-~~dai~~~~D~ 203 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHGG-GCSEEEECSCH
T ss_pred HHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHHHhc-cCCEEEECCcH
Confidence 7788999999999988654322 24677788888874 78888876554
No 78
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.34 E-value=7.7e-06 Score=83.90 Aligned_cols=211 Identities=8% Similarity=-0.037 Sum_probs=135.2
Q ss_pred CceEEEEEEeeC---CCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 004042 29 PAVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (777)
Q Consensus 29 ~~~i~IG~l~~~---s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~ 105 (777)
..+.+||++.|. +..+......+++.+.++. |+++ .+.+...++....+....++.+++++||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 346789999996 3455566777777777652 5554 44566777777777777888888888886433
Q ss_pred hhHHHHHHHhhcc-CCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHH
Q 004042 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVS 182 (777)
Q Consensus 106 s~~~~~va~~~~~-~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~ 182 (777)
+.....+ ..+.. .++|+|......+ + +.+..+..+....+..++++|...|.++|++|..+. ..+.+..+
T Consensus 87 ~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 2222233 33445 7999998754322 1 223455677777788888998888999999998543 34566778
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.|.+.+++.|+++.....+... .+..+....++++.+ .++++|+. .+...+..+++++++.|+..++ ...++.+
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8999999998765432222212 224445556666644 35777765 4556677889999999986543 4444443
No 79
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.31 E-value=4e-05 Score=80.08 Aligned_cols=211 Identities=8% Similarity=-0.000 Sum_probs=136.1
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcC--cEEEEcCCChh
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD--IVAIIGPQCST 107 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~--v~aviGp~~s~ 107 (777)
+.+||++.|.. ..+-.....+++.+.++. |+++ .+.++..++....+....+++++ +.+||......
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 46899999854 333345566666666553 4444 34466677777777777888888 99988644333
Q ss_pred -HHHHHHHhhccCCceEEecccCCCCCCCCCC--CceEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEe--Cccccch
Q 004042 108 -VAHIVSYVSNELQVPLLSFGVTDPTLSSLQY--PFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVD--NEYGRNG 180 (777)
Q Consensus 108 -~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~--~~~~r~~p~~~~~~~a~~~~l~~--~~w~~vaii~~~--~~~g~~~ 180 (777)
........+...++|+|......+......+ +.+..+..++...++.++++|.. .|.++|++|... .......
T Consensus 75 ~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R 154 (332)
T 2rjo_A 75 ADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIER 154 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHH
Confidence 2333445555679999987554322111111 35667778888888989998777 699999999854 2345567
Q ss_pred HHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcC---CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 181 VSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 181 ~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
.+.|++.+++. |+++.....-. .+..+....++++.+. ++++|+. .+...+..+++++++.|+. .+...+
T Consensus 155 ~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~-~di~vv 228 (332)
T 2rjo_A 155 KAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA-GQIPVT 228 (332)
T ss_dssp HHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB-TTBCEE
T ss_pred HHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC-CCCEEE
Confidence 78899999999 98876432211 2244555556665443 4666654 4556677899999999986 333333
Q ss_pred E
Q 004042 257 A 257 (777)
Q Consensus 257 ~ 257 (777)
+
T Consensus 229 g 229 (332)
T 2rjo_A 229 G 229 (332)
T ss_dssp C
T ss_pred e
Confidence 3
No 80
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.31 E-value=5.2e-06 Score=84.93 Aligned_cols=208 Identities=9% Similarity=-0.012 Sum_probs=130.0
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
..+.+||++.|.+..+......+++.+.++ .|+++.+ .++..++....+....++.+++++||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK--------HHLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG--------GTCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 456789999998322233444555544443 2565544 566667777777777888889998887544322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~~ 186 (777)
...+..+ .++|+|......+. +.+..+..++...++.++++|...|.++|++|... ........+.|++
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222222 78999987543221 23445667788888889999888899999999854 2345566788999
Q ss_pred HHhhcceEEEEeeec--CCCCCC----ChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 187 KLAERRCRISYKSGI--PPESGV----NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~--~~~~~~----~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
.+++.|+++.....+ ... . +..+....++++.+.++++|+.. +...+..+++++++.|+..++ ...++.
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~vvg~ 222 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEKEIKKDVIIVGF 222 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSCCBTTTBEEEEE
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCCCCCCceEEEEe
Confidence 999998765321111 111 1 12333344555444478877654 555677789999999986543 334443
No 81
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.30 E-value=4.4e-05 Score=77.92 Aligned_cols=209 Identities=9% Similarity=-0.035 Sum_probs=135.2
Q ss_pred eEEEEEEeeCC---CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh-
Q 004042 31 VVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS- 106 (777)
Q Consensus 31 ~i~IG~l~~~s---~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s- 106 (777)
+.+||++.|.. ..+......+++.+.++. |+++.+...|+..++....+....++.+++++||.....
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 45799999864 344445667777766654 466655544446677777777888888899888764333
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEe--CccccchHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVD--NEYGRNGVS 182 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~-~-w~~vaii~~~--~~~g~~~~~ 182 (777)
.........+...++|+|......+ + .+.+..+.++....++.++++|... | .++|++|... ........+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMK---Q--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCS---S--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCC---C--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 2222344555668999998754322 1 1235567788888888888987764 6 9999999854 234556678
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
.+++.+++.|..+...... . .+..+....+.++.+. .+++|+. .+...+..+++++++.|+. .+...++.
T Consensus 152 gf~~~l~~~g~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vvg~ 223 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYC--D--SNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE-AKVKLVCI 223 (289)
T ss_dssp HHHHHHGGGGGGEEEEEEC--T--TCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHHHhCCCcEEeeecC--C--CCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC-CCEEEEEE
Confidence 8999999988764332211 1 2245555556665443 4566554 4556677889999999986 44444443
No 82
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.28 E-value=6.9e-05 Score=77.02 Aligned_cols=210 Identities=10% Similarity=-0.044 Sum_probs=133.4
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~ 107 (777)
++.+||++.|.. ..+......+++.+.++. |+++.+ ..++..++....+....++.+++.+||- |..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 357899999875 344456677777777764 344432 2345678877777788888888888764 54444
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cCCc-EEEEEEEe--CccccchHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWN-AVSVIFVD--NEYGRNGVSA 183 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-~~w~-~vaii~~~--~~~g~~~~~~ 183 (777)
........+...++|+|...... .. .+.+.....++...++.+++++.. .|.+ +++++... ........+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43444555667899999875431 11 134556677888888888898776 8887 99988743 2334556778
Q ss_pred HHHHHhhcc--eEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 184 LNDKLAERR--CRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 184 ~~~~~~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
+++.+++.+ +++... .+... .+..+....++++.+. ++++|+. .+...+..+++++++.|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 888888764 444321 11212 2345555666666544 3455554 3445677789999999986 34444443
No 83
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.26 E-value=2.5e-05 Score=80.18 Aligned_cols=205 Identities=8% Similarity=-0.041 Sum_probs=138.6
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~avi-Gp~~s~~ 108 (777)
.++||++.|.. ..+-.....+++.+.++. |+++.+...++..++.+..+....++.+++++|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 46899999986 444456677777777763 4555544322225788888888888888888777 4555444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC--CcEEEEEEEe--CccccchHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG--WNAVSVIFVD--NEYGRNGVSAL 184 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~--w~~vaii~~~--~~~g~~~~~~~ 184 (777)
.......+...++|+|......+... ..+.+.....+....++.++++|...+ -++|+++..+ ........+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 45556667778999998765433211 123455667788888999999988877 8999999743 23445667889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCC
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~ 251 (777)
++.+++.|+++.... . . .........+.++.+. ++++|+. .+...+..+++++++.|+..|
T Consensus 153 ~~~l~~~g~~~~~~~-~--~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD-V--G--TDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE-C--C--SCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee-c--C--CChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCccC
Confidence 999999999887543 1 1 2245555666664433 4566554 556667778899998887543
No 84
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.25 E-value=9.3e-05 Score=76.65 Aligned_cols=205 Identities=11% Similarity=-0.003 Sum_probs=130.2
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhcCcEEEE-cCCChhHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAII-GPQCSTVA 109 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~~v~avi-Gp~~s~~~ 109 (777)
+||++.|.. .++......+++.+.++. |+ ++.+. ++..++....+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~--~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GI--DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TC--EEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999865 344445667777777664 34 44455 4667888888888899999988765 45554443
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh---cCCcEEEEEEEe--CccccchHHHH
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY---YGWNAVSVIFVD--NEYGRNGVSAL 184 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~---~~w~~vaii~~~--~~~g~~~~~~~ 184 (777)
..+...+...++|+|.+....+ +.. ...+....+....++..+++|.. .|-++|++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4455566778999998754221 111 12232256777778888888765 578999999743 33445667778
Q ss_pred HHHHhhc--ceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 185 ~~~~~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
.+.+++. ++++.....-. .+..+....++++..+ ++++|+. .+...+.-+++++++.| . .+...++.
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~ 221 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGF 221 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEB
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEe
Confidence 8888765 66665432222 2245555566665543 4565554 44556777899999988 5 44444443
No 85
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.24 E-value=4e-05 Score=78.20 Aligned_cols=210 Identities=8% Similarity=0.001 Sum_probs=132.2
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++++||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999864 444455677777777653 455544 566677777777777888888888875332221
Q ss_pred HHHHHHhhc-cCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHHH
Q 004042 109 AHIVSYVSN-ELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (777)
Q Consensus 109 ~~~va~~~~-~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~ 185 (777)
. .....+. ..++|+|......+ +. +....+.+++...+..++++|...|.++|++|..+ ........+.+.
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 2233333 37999998754322 11 22345667778888889999888899999999753 335667788899
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
+.+++.|+++.....+... .+..+....++++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 150 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~ 222 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGY 222 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 9999998765322122211 224445556666654 35777665 4556677889999999986543 344443
No 86
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.24 E-value=5.1e-05 Score=78.01 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=132.0
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
...++|||++--.+-+.=...+.|++ +.+++.|.. .|.++++.+.|.++|+....+.+.+|+++++++|++ ..+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIia-i~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVG-IATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEE-ESHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEE-cCCH
Confidence 35689999885544221124455554 555666655 588999999999999999999999999999999986 3444
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCC---C---CCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeCc-ccc
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLS---S---LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGR 178 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~---~---~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~~-~g~ 178 (777)
.+.+++. ...++|++-.+.+++.-. + ...+++..+.-... ....+++++++ +.++|++||.... ...
T Consensus 80 aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~~--~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSP--VEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCC--HHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCcC--HHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 5555444 345799987666665432 1 11245554432111 34445666553 7899999996543 334
Q ss_pred chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH---HHHHHHHHHHcCC
Q 004042 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL---GFQVFSVAKYLGM 248 (777)
Q Consensus 179 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~---~~~~l~~a~~~gl 248 (777)
...+.+++.+++.|++++..... +..+....++.+.. +.+++++..+... ...+...+.+.+.
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~~-~~d~i~~~~d~~~~~~~~~i~~~~~~~~i 221 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDNTVASAIEGMIVAANQAKT 221 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHHT-TCSEEEECSCHHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhccC-CeeEEEEeCCcchhhHHHHHHHHHhhcCC
Confidence 55677888999999998754322 25677777777764 5788887666532 2333444555443
No 87
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.21 E-value=2.9e-06 Score=87.66 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=116.7
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee-
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD- 543 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~- 543 (777)
++|+||+... +.|+..... -.++++.|++++|.++++.. . .+|.+++..|.+|++|+++.+
T Consensus 4 ~~l~iG~~p~--~~p~~~~~~--------~~~l~~~l~k~lG~~ve~~~--~------~~~~~~i~al~~G~vDi~~~~~ 65 (310)
T 3n5l_A 4 PVINFGIIST--ESSQNLKSI--------WEPFLKDMSQQTGYQVKAFF--A------PDYAGIIQGMRFDKVDIAWYGN 65 (310)
T ss_dssp CEEEEEECCS--SCHHHHHHH--------HHHHHHHHHHHHSSEEEEEC--C------SSHHHHHHHHHTTSCSEEECCH
T ss_pred cEEEEEEecC--CCHHHHHHH--------HHHHHHHHHHHhCCCEEEEe--C------CCHHHHHHHHHcCCCCEEEECc
Confidence 6799999863 334333211 14799999999999855543 2 469999999999999999754
Q ss_pred EEEee--cccceeeeccccc-----ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCC
Q 004042 544 ITIVT--NRTKIVDFSQPYA-----ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFR 616 (777)
Q Consensus 544 ~~~t~--~r~~~~dfs~p~~-----~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (777)
..+.. +|.....|+.++. .....++|++..
T Consensus 66 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds------------------------------------------- 102 (310)
T 3n5l_A 66 KAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS------------------------------------------- 102 (310)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC-------------------------------------------
T ss_pred HHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC-------------------------------------------
Confidence 33332 2333445544321 112356666544
Q ss_pred CCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhh----hhCC
Q 004042 617 GPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESL----RKSD 692 (777)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl----~~~~ 692 (777)
+|++++|| + |
T Consensus 103 ----------------------------------------------------------------~i~sl~DL~~~~k--g 116 (310)
T 3n5l_A 103 ----------------------------------------------------------------KIDSLEDMLANAK--S 116 (310)
T ss_dssp ----------------------------------------------------------------SCCSHHHHHHTGG--G
T ss_pred ----------------------------------------------------------------CCCCHHHHhhhcC--C
Confidence 89999999 6 8
Q ss_pred CCeEEe-eCchHHHH-----HHhhhccccc---cccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC----CC
Q 004042 693 DPIGYQ-EGSFAEYY-----LSQELNISKS---RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ----CS 759 (777)
Q Consensus 693 ~~i~~~-~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~----~~ 759 (777)
++|++. .+++...+ |.+..+.... +.+...+..+++.+|.+ |++|+.+.+.+.+.+++++. .+
T Consensus 117 k~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~ 192 (310)
T 3n5l_A 117 LTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQ 192 (310)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTT
T ss_pred CEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhC
Confidence 889864 34332211 2122233221 12223567789999999 99999999999999888764 46
Q ss_pred eEEecccccccceEEEe
Q 004042 760 FRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 760 l~~~~~~~~~~~~g~~~ 776 (777)
++++........++|++
T Consensus 193 lrvl~~s~~~p~~~i~~ 209 (310)
T 3n5l_A 193 LKVIWKSPLIPGDPLVW 209 (310)
T ss_dssp EEEEEEEEEEECCEEEE
T ss_pred EEEEEECCCCCCCcEEE
Confidence 88877554445566654
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=7.4e-05 Score=77.78 Aligned_cols=210 Identities=9% Similarity=0.038 Sum_probs=129.8
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH-
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV- 108 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~- 108 (777)
.+.+||++.|.+..+-.....+++.+.+ +. .|+++ .+.++..++....+....++.+++++||....+..
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~---~~----~g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAM---FY----NGVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHT---TS----SSCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHH---Hc----CCcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4568999998733222233444444432 21 15554 44566677777777778888889998887544332
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeC--ccccchHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN--EYGRNGVSAL 184 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~--~~g~~~~~~~ 184 (777)
.......+...++|+|......+ + .+.+....+++...++.++++|... |.++|++|.... .......+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKIL---S--DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS---S--SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC---C--cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 23344455567999998754322 1 1234456677787888888887664 899999998542 3445667889
Q ss_pred HHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 185 ~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
++.+++. |+++..... .. .+..+....+.++.+ ..+++|+. .+...+..+++++++.|+ +.+...++.+
T Consensus 151 ~~al~~~pg~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKAD--AA--WERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHTCTEEEEEEEEE--CT--TSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHhCCCCEEEeeec--CC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 9999998 887754221 11 123444445555543 35777764 445567778999999997 3344444443
No 89
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.20 E-value=3.1e-05 Score=79.70 Aligned_cols=205 Identities=6% Similarity=-0.107 Sum_probs=131.7
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChh
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~ 107 (777)
.+.+||++.|.. ..+-.....+++.+.++. |+++.+...+...++....+....++.+++++||- |....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 457899999965 333345556666665553 45555544433338888888888888888887774 44333
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC-----CcEEEEEEEe--Cccccch
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG-----WNAVSVIFVD--NEYGRNG 180 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~-----w~~vaii~~~--~~~g~~~ 180 (777)
........+. .++|+|......+.......+.+..+.++....++.++++|...+ -++|+++... .......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223334445 899999874433211111234566777888888999999988888 8899999743 3345567
Q ss_pred HHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHh-cCCCeEEEEecChhHHHHHHHHHHHcCCC
Q 004042 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vIvl~~~~~~~~~~l~~a~~~gl~ 249 (777)
.+.+++.+++.|+++.... ... .+.......+.++. ..++++ | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8899999999998877543 222 22344444444443 335777 4 45677788899999999985
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.20 E-value=7.7e-05 Score=76.12 Aligned_cols=197 Identities=8% Similarity=0.020 Sum_probs=126.4
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC-hhHH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC-STVA 109 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~-s~~~ 109 (777)
.+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.+++++||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999864 444455667777666652 5554 44566777877777788888888988886433 2222
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEE-ecCCchHHHHHHHHHHHhc------CCcE--EEEEEEe--Ccccc
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVR-TTQSDSYQMTAVAEMVSYY------GWNA--VSVIFVD--NEYGR 178 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r-~~p~~~~~~~a~~~~l~~~------~w~~--vaii~~~--~~~g~ 178 (777)
......+...++|+|......+ +. +.... +..++...++.++++|... |.++ |+++... .....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGIN---AR--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---CS--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCC---CC--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 2334445568999998754322 11 11223 6677777788888887766 8899 6666643 23455
Q ss_pred chHHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCC
Q 004042 179 NGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 179 ~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
...+.|++.+++. |+++.....- . .+..+....++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~--~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSA--E--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEEC--T--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccC--C--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6678899999998 8876542211 1 123444455555543 35777764 455667788999999998
No 91
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.16 E-value=0.00018 Score=73.67 Aligned_cols=200 Identities=9% Similarity=0.081 Sum_probs=127.6
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 004042 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (777)
Q Consensus 31 ~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~ 110 (777)
+.+||++-..+.++-.....|++-+++ +.| . .|.++.+.+.|+.+++.+..+....+.++++++||.... ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~---~~g-y-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLA---EEG-Y-KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHH---HTT-C-CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHH---HcC-C-CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 468999833333332344455554443 333 2 356888889999999999888888888889998887433 2233
Q ss_pred HHHHhhccCCceEEecccCCCCCC---C---CCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeCc-cccchH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLS---S---LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNGV 181 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~---~---~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~~-~g~~~~ 181 (777)
.+.. ...++|+|..+...+... . ....++.... +..-+...++++.+. |.++|++|+.... .+....
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3332 247899998654443221 1 1112444433 222356666877777 8999999996543 345667
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCC
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
+.+++.+++.|+++....... ..+....++++.. ++++|++..+. .+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~~------~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVPS------TNEIASTVTVMTS-KVDAIWVPIDN-TIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEESS------GGGHHHHHHHHTT-TCSEEEECSCH-HHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecCC------HHHHHHHHHHHHh-cCCEEEECCch-hHHHHHHHHHHHHH
Confidence 889999999999886543321 4577778888864 78888876543 44456677777664
No 92
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.15 E-value=7.1e-05 Score=76.93 Aligned_cols=213 Identities=9% Similarity=-0.035 Sum_probs=134.3
Q ss_pred CceEEEEEEeeCC--CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEc-cCCCChHHHHHHHHHHHhcCcEEEEcC-C
Q 004042 29 PAVVNVGALFTLD--STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAIIGP-Q 104 (777)
Q Consensus 29 ~~~i~IG~l~~~s--~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~~v~aviGp-~ 104 (777)
..+.+||+++|.. ..+-.....+++.+.++.+ |+.+.+... ++..++..-.+....++.+++++||-. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-------DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-------GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-------hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4568999999985 3444455666666666541 456666554 345577777777778888888887753 3
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCC--cEEEEEEEe------Ccc
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW--NAVSVIFVD------NEY 176 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w--~~vaii~~~------~~~ 176 (777)
...........+...++|+|......+.. +.+..+.++....++.++++|...|. ++|++|... ...
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33334445555667799999875433211 12455667888889999999888877 999999843 233
Q ss_pred ccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 177 GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 177 g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
.....+.+++.+++.|..+......... .+.......+.++.+ .++++|+...+. +..+++++++.|+ .+..
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~ 227 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHA--DLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDFS 227 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEES--SCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSCE
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecC--CCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcE
Confidence 4566788999998887543222111111 112223333444432 357888776655 6679999999998 4555
Q ss_pred EEEeC
Q 004042 255 WIATD 259 (777)
Q Consensus 255 ~i~~~ 259 (777)
.++.+
T Consensus 228 vig~d 232 (304)
T 3gbv_A 228 LIGYD 232 (304)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 55544
No 93
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.15 E-value=0.00012 Score=75.51 Aligned_cols=204 Identities=10% Similarity=0.028 Sum_probs=129.5
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC-hhHH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC-STVA 109 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~-s~~~ 109 (777)
-+||++.|.. ..+......+++.+.++. |+ +++.+.++..++....+....++.+++.+||-... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999864 333334455555444432 44 24455677777777777777888888888776433 3333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh------------cCCcEEEEEEEe--Cc
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY------------YGWNAVSVIFVD--NE 175 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~------------~~w~~vaii~~~--~~ 175 (777)
......+...++|+|......+...-..++.+..+..++...++.++++|.. .|-++|++|... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3445556678999998754321100011345667778888888888888766 678899999753 33
Q ss_pred cccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC----CCeEEEEecChhHHHHHHHHHHHcC
Q 004042 176 YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM----ESRVIVLHVSPSLGFQVFSVAKYLG 247 (777)
Q Consensus 176 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~----~~~vIvl~~~~~~~~~~l~~a~~~g 247 (777)
......+.|++.+++.|+.+.....+... .+..+....++++.+. ++++|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 45566788999999999766433222222 2244455566666543 4676664 45566778999999988
No 94
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.14 E-value=6.9e-06 Score=85.05 Aligned_cols=183 Identities=19% Similarity=0.171 Sum_probs=116.8
Q ss_pred CCceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 463 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
..++|++|+... +.|... ...--++++.|++++|.++++.. . .+|.+++..|.+|++|+++.
T Consensus 12 ~~~~l~~Gv~p~--~~~~~~--------~~~~~~l~~~L~k~lG~~ve~~~--~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIST--ESQQNL--------KPQWTPFLQDMEKKLGVKVNAFF--A------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECCS--SCHHHH--------HHHHHHHHHHHHHHHTSCEEEEC--C------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEecC--CCHHHH--------HHHHHHHHHHHHHHHCCCEEEEe--c------CCHHHHHHHHHcCCCcEEEE
Confidence 356799999753 223221 11123689999999998855543 2 46999999999999999974
Q ss_pred -eEEEeec--ccceeeeccccc-----ccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCC
Q 004042 543 -DITIVTN--RTKIVDFSQPYA-----ASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDE 614 (777)
Q Consensus 543 -~~~~t~~--r~~~~dfs~p~~-----~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~ 614 (777)
+.+++.. |.....|..|+. .....++|++..
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds----------------------------------------- 112 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS----------------------------------------- 112 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC-----------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC-----------------------------------------
Confidence 3444443 333444543321 112356666554
Q ss_pred CCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhh----hh
Q 004042 615 FRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESL----RK 690 (777)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl----~~ 690 (777)
+|++++|| +
T Consensus 113 ------------------------------------------------------------------~i~sl~DL~~~~k- 125 (321)
T 3p7i_A 113 ------------------------------------------------------------------PINNLNDLLAKRK- 125 (321)
T ss_dssp ------------------------------------------------------------------SCCSHHHHHHTGG-
T ss_pred ------------------------------------------------------------------CCCCHHHHHhhcC-
Confidence 89999999 6
Q ss_pred CCCCeEEe-eCchHH----HH-HHhhhcccccc--ccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC----C
Q 004042 691 SDDPIGYQ-EGSFAE----YY-LSQELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ----C 758 (777)
Q Consensus 691 ~~~~i~~~-~~~~~~----~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~----~ 758 (777)
+++|++. .+++.. .+ +....+.+..+ .+.+.+..+++.+|.+ |++|+.+.+.+.+.+++++. .
T Consensus 126 -gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~ 200 (321)
T 3p7i_A 126 -DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLK 200 (321)
T ss_dssp -GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHT
T ss_pred -CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhc
Confidence 7788863 343321 11 21223333222 1234567889999999 99999999999998888753 4
Q ss_pred CeEEecccccccceEEEe
Q 004042 759 SFRIVGQEFTKSGWGFVS 776 (777)
Q Consensus 759 ~l~~~~~~~~~~~~g~~~ 776 (777)
+++++........++|++
T Consensus 201 ~lrvl~~s~~~p~~~i~~ 218 (321)
T 3p7i_A 201 ELKVIWKSPLIPGDPIVW 218 (321)
T ss_dssp TEEEEEECSCBCCCEEEE
T ss_pred cEEEEEEcCCCCCCceee
Confidence 688887655555667764
No 95
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.13 E-value=0.00011 Score=74.70 Aligned_cols=199 Identities=12% Similarity=0.051 Sum_probs=127.1
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++......+++.+.++ .|+++.+ .+...++....+....++.+++++||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999864 33444556666666554 2566554 455567766666677777889998886443322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
...+.. +. .++|+|......+ + +.+..+..++...+..++++|...|-++|++|.... ....+..+.+++
T Consensus 77 ~~~~~~-l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPELQN-II-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHH-HH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHH-Hh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 233333 34 8999998754322 1 123345677777788888988888999999998543 344566778899
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHH--HhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~ 252 (777)
.+++.|+++. ...-.. +..+....+++ +.+. .+++|+. .+...+..+++++++.|+..|+
T Consensus 149 ~l~~~g~~~~-~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 212 (285)
T 3c3k_A 149 RLKFHGLDYS-RISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQ 212 (285)
T ss_dssp HHHHHTCCCC-EEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCce-EeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 9998887653 111111 13344455666 5443 5677664 4556677889999999986544
No 96
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.13 E-value=8.7e-05 Score=75.75 Aligned_cols=207 Identities=11% Similarity=-0.060 Sum_probs=136.6
Q ss_pred eEEEEEEeeCCC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEE-cCCChhH
Q 004042 31 VVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (777)
Q Consensus 31 ~i~IG~l~~~s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~avi-Gp~~s~~ 108 (777)
+-+||++.|... .+......+++.+.++. |+++ .+.+...++....+....++.+++++|| .|..+..
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 458999999653 33344566666666553 4544 4446677777777778888888888877 4555455
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEeC--ccccchHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDN--EYGRNGVSAL 184 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~--~~w~~vaii~~~~--~~g~~~~~~~ 184 (777)
.......+...++|+|......+ +.+.....+....++.+++++.. .|-++|+++.... .......+.+
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQM 147 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHH
Confidence 56666777788999998754331 13445667788888999998887 8999999997432 2344557788
Q ss_pred HHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcC-----CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 185 ~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~-----~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
++.+++. |+++.....+.... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+. +...++.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg~ 223 (291)
T 3l49_A 148 KYVLEAFPDVKIIEPELRDVIP-NTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYGV 223 (291)
T ss_dssp HHHHHTCTTEEECSSCBCCCSS-SHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEEE
T ss_pred HHHHHHCCCCEEEeeeccCCCC-CCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEEe
Confidence 9999988 67754433332220 1233444455555443 567764 45666778889999999986 4444443
No 97
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.12 E-value=2.2e-05 Score=79.63 Aligned_cols=202 Identities=9% Similarity=-0.017 Sum_probs=117.6
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~ 111 (777)
+||++.|.. .++-.....+++.+.++. |+++ .+.++..++....+....+..++++++|........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDL--ALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEE--EECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489999853 333234444544444332 4544 445555555555556667777788887753332222 3
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC------cccc-chHHHH
Q 004042 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN------EYGR-NGVSAL 184 (777)
Q Consensus 112 va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~------~~g~-~~~~~~ 184 (777)
....+...++|++......+ + +..+..++...++.++++|...|.++|++|.... .... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33455668999998754321 1 4556677888888999998888999999998543 2445 677889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
++.+++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999998764321111111 1244455566666554 467766 556667888999999999865543333
No 98
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.10 E-value=0.00017 Score=74.23 Aligned_cols=211 Identities=7% Similarity=-0.002 Sum_probs=130.6
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH-
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV- 108 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~- 108 (777)
+++||++.|.. ..+......+++.+.++. |+++. +.++..++....+....++.+++++||.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 47899999975 344445566666666553 45544 4466667777777777788888988876433322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcC---CcEEEEEEEeC--ccccchHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG---WNAVSVIFVDN--EYGRNGVSA 183 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~---w~~vaii~~~~--~~g~~~~~~ 183 (777)
.......+...++|+|......+.. ...+++..+..++...++.++++|...| -++|++|.... ....+..+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1233344556799999875432211 1011345566777878888888877765 78999998542 334566788
Q ss_pred HHHHHhhcce-EEEEeeecCCCCCCChhhHHHHHHHHhc-----CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEE
Q 004042 184 LNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (777)
Q Consensus 184 ~~~~~~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i 256 (777)
+++.+++.|. ++..... .. .+..+....++++.+ ..+++|+. .+...+..+++++++.|+..++ ...+
T Consensus 150 f~~al~~~g~~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQS--GD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEecc--CC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999998885 4332211 11 123344444555433 35677665 4556677799999999986543 4444
Q ss_pred Ee
Q 004042 257 AT 258 (777)
Q Consensus 257 ~~ 258 (777)
+.
T Consensus 225 g~ 226 (306)
T 2vk2_A 225 SI 226 (306)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 99
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.09 E-value=0.00014 Score=74.25 Aligned_cols=209 Identities=11% Similarity=-0.008 Sum_probs=132.2
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||++.|.. .++-.....+++.+.++. |+++. +.++..++....+....++.+++++||.......
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 456899999854 333344555665555542 55554 4455667776666777788888888876433322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
.......+...++|+|......+ + +.+..+..++...+..++++|...|.++|++|.... ....+..+.|++
T Consensus 89 ~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 89 EHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp TCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 22233455668999998754322 1 223456677788888889998888999999998642 344566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.+++.|++..... ... .+..+....++++.+. .+++|+. .+...+..+++++++.|+..++ ...++.+
T Consensus 163 ~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 163 AWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999987433221 111 2244455566666544 4676654 4555677789999999886443 4444443
No 100
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.09 E-value=0.00023 Score=74.79 Aligned_cols=214 Identities=12% Similarity=0.018 Sum_probs=138.6
Q ss_pred eEEEEEEeeCCC--cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHh--cCcEEEEcCCCh
Q 004042 31 VVNVGALFTLDS--TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME--TDIVAIIGPQCS 106 (777)
Q Consensus 31 ~i~IG~l~~~s~--~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~--~~v~aviGp~~s 106 (777)
..+||++.|... ++-.....+++.+.++. |+++.+ .+...++..-.+.+.+++. +++++||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 358999999863 34456677777776664 455544 4677788887888888988 588877754344
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCC-------CCCC-ceEEecCCchHHHHHHHHHHHhcC------C-cEEEEEE
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSS-------LQYP-FFVRTTQSDSYQMTAVAEMVSYYG------W-NAVSVIF 171 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~-------~~~~-~~~r~~p~~~~~~~a~~~~l~~~~------w-~~vaii~ 171 (777)
.....+...+...++|+|......+.... ..|+ ++..+.++....+..++++|...+ - ++|+++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 45556667788899999987654433220 1111 266777888888899999877665 4 7999997
Q ss_pred Ee--CccccchHHHHHHHHhhcce-EEEEeeecCCCCCCChhhHHHHHHHHhcCC--CeEEEEecChhHHHHHHHHHHHc
Q 004042 172 VD--NEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYL 246 (777)
Q Consensus 172 ~~--~~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vIvl~~~~~~~~~~l~~a~~~ 246 (777)
.. ........+.+++.+++.|. .+... +... .+.......+.++.+.. +++|+ +++...+..+++++++.
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~-~~~d~~a~g~~~al~~~ 227 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVW-SANDEMALGAMQAAREL 227 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEE-ECChHHHHHHHHHHHHc
Confidence 43 23445567889999999885 32222 2222 23455555566655433 45443 45566777899999999
Q ss_pred CCCCCC-eEEEEeC
Q 004042 247 GMMGNG-YVWIATD 259 (777)
Q Consensus 247 gl~~~~-~~~i~~~ 259 (777)
|+..++ ...++.+
T Consensus 228 G~~vP~di~vvg~d 241 (350)
T 3h75_A 228 GRKPGTDLLFSGVN 241 (350)
T ss_dssp TCCBTTTBEEEEES
T ss_pred CCCCCCCeEEEecC
Confidence 987543 4444443
No 101
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.09 E-value=8.9e-05 Score=74.81 Aligned_cols=207 Identities=11% Similarity=0.009 Sum_probs=134.1
Q ss_pred EEEEEEeeCCC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 004042 32 VNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (777)
Q Consensus 32 i~IG~l~~~s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~ 110 (777)
-+||+++|... ++-.....+++.+.++. |+++.+ .+...++....+....++.+++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 37999999753 33344556666555542 565554 45566777777777788888888777533331123
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALNDKL 188 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~~~ 188 (777)
.....+...++|+|......+ + +.+.....+....++.++++|...|.++|+++.... ....+..+.+++.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 344556677999998654322 1 223456677888889999999999999999998643 34556778899999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC---CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
++.|+++.....-.. +..+....+.++.+. .+++|+. .+...+..+++++++.|+.+.+...++.+
T Consensus 147 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEAF----SRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESSS----SHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCCC----CHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 999987654332222 244444555555432 4677654 56667788999999999833344555544
No 102
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.08 E-value=0.0001 Score=75.22 Aligned_cols=210 Identities=9% Similarity=0.006 Sum_probs=132.6
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 29 ~~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
..+.+||++.|.. .++-.....+++.+.++ .|+++.+ .++..++....+....++.+++++||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4467899999864 33334556666665554 2565544 46666777766677778888888877533222
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC---ccccchHHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSAL 184 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~---~~g~~~~~~~ 184 (777)
....+ ..+...++|+|......+ + +.+.....++...++.++++|...|.++|++|.... ....+..+.+
T Consensus 84 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TDEHV-AEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CHHHH-HHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 22223 334467999998754322 1 223345677888888899998888999999998543 3456678889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
++.+++.|+++.....+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 157 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~ 230 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGF 230 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 99999998765321111111 2244555566666553 4676664 4556677899999999986443 444443
No 103
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.07 E-value=0.00029 Score=72.35 Aligned_cols=210 Identities=9% Similarity=-0.038 Sum_probs=135.8
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVA 109 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~~ 109 (777)
-+||++.|.. .++-.....+++.+.++. |+++.+. .++..++..-.+....++.+++++||- |......
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 4799998876 333345667777776664 4555542 366678888777888888888888774 3333333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeC-ccccchHHHHHH
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN-EYGRNGVSALND 186 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~-~~g~~~~~~~~~ 186 (777)
......+...++|+|......+. . +.+..+.+++...+..++++|... |-++|+++.... .......+.+++
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~ 150 (305)
T 3g1w_A 76 TDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE 150 (305)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHH
Confidence 44455566789999987553321 1 124455678888899999998877 999999998432 233455677888
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.+++.|..+.....+... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 151 ~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 151 TLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 888876654433222222 2344555555555443 455554 45566678899999999986 455555544
No 104
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.04 E-value=0.00038 Score=70.63 Aligned_cols=205 Identities=10% Similarity=0.119 Sum_probs=127.4
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~~~ 110 (777)
+||++.|.. .++......+++.+.++. |+++ .+.++..++....+....+++++|++||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998864 333445666666666653 4544 44566667777677777888888888764 43333222
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEeC--ccccchHHHHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~-~-w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
.....+...++|+|......+ +. +.+.....++...++.++++|... | -++|++|.... ....+..+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 333445677999998754221 11 123345567777788888887665 5 89999998533 233456778999
Q ss_pred HHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 187 KLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 187 ~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.+++. |+++.....-. .+..+....++++.+. .+++|+ +.+...+.-+++++++.|+ .+...++.+
T Consensus 148 al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99888 88765432211 1244444455555432 456554 4455667888999999998 444445443
No 105
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.04 E-value=0.00024 Score=72.55 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=134.1
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCCh
Q 004042 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (777)
Q Consensus 29 ~~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s 106 (777)
..+-+||++.|.. .++-.....+++.+.++. |+++. +.+...++....+....++.+++++||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3457899999875 333344556666555543 45444 4566777877777888888888887775 3333
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-c-CCc-----EEEEEEEe--Cccc
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-Y-GWN-----AVSVIFVD--NEYG 177 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-~-~w~-----~vaii~~~--~~~g 177 (777)
.........+...++|+|......+. .+.+..+..+....+..++++|.. + |-+ +|++|... ....
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334455666779999987543321 123456677888888888888766 5 666 99999843 3345
Q ss_pred cchHHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 178 RNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 178 ~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
....+.+.+.+++. |+++.....-. .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+. +..
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~ 223 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS--GKI 223 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC--CCE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC--CeE
Confidence 56678899999999 99876543222 2355555566666543 456554 45566677899999999985 444
Q ss_pred EEEe
Q 004042 255 WIAT 258 (777)
Q Consensus 255 ~i~~ 258 (777)
.++.
T Consensus 224 vig~ 227 (293)
T 3l6u_A 224 VVGI 227 (293)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 106
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.03 E-value=0.00011 Score=76.59 Aligned_cols=208 Identities=10% Similarity=0.017 Sum_probs=130.3
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++......+++.+.++ .|+++.+ .++..++....+....+..+++++||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999864 33334556666665554 2566544 456667766666677777888988876332222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
...+ ..+...++|++......+ + +.+.....++...+..++++|...|.++|++|.... ....+..+.|.+
T Consensus 132 ~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIR-TSLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHH-HHHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 2223 333467899998754322 1 123345677777788888988888999999998542 334566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEE
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~ 257 (777)
.+++.|+.+.....+... .+..+-...++++.+..+++|+. .+...+..+++++++.|+..|+ ...++
T Consensus 205 al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp HHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEE
Confidence 999999765422112211 12333344455543337888776 4556677899999999986544 34444
No 107
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.03 E-value=7.9e-05 Score=75.96 Aligned_cols=209 Identities=9% Similarity=0.015 Sum_probs=130.0
Q ss_pred eEEEEEEeeC-----CCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 004042 31 VVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (777)
Q Consensus 31 ~i~IG~l~~~-----s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~ 105 (777)
+-+||++.|. +.++-.....+++.+.++. |+++.+ .++..++....+....+..+++++||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 3479999986 4444455666776666542 565543 455555555555666777788888775332
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~ 183 (777)
.... .....+...++|+|......+ + +.+.....++...++.++++|...|.++|++|.... .......+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2212 233344567999998754322 1 123345567777888888988888999999998542 234566788
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-C---CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-M---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
+++.+++.|+.+.....+... .+..+....++++.+ . ++++|+. .+...+..+++++++.|+..|+ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 999999998765321111111 224444556666654 3 5677665 4556677889999999986543 444444
Q ss_pred C
Q 004042 259 D 259 (777)
Q Consensus 259 ~ 259 (777)
+
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 3
No 108
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.03 E-value=6.2e-05 Score=76.91 Aligned_cols=209 Identities=7% Similarity=-0.066 Sum_probs=127.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHH---HHHHHHhcCcEEEEcCCC
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMV---EALRFMETDIVAIIGPQC 105 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~---~a~~l~~~~v~aviGp~~ 105 (777)
.+.+||++.|.. .++......+++.+.++ .|+++.+ .++..++....+ ....++.+++++||....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 356899999864 33334556666666554 2566544 455555555555 566677778888876333
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~ 183 (777)
..... ....+...++|+|......+ + +.+.....++...++.++++|...|.++|++|.... ....+..+.
T Consensus 77 ~~~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHDE-DLDELHRMHPKMVFLNRAFD---A---LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCHH-HHHHHHHHCSSEEEESSCCT---T---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCHH-HHHHHhhcCCCEEEEccccC---C---CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 22222 23334457899998754322 1 123345677777888888998888999999998542 334566778
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
+++.+++.|+++.....+... .+..+....++++.+ ..+++|+. .+...+..+++++++.|+..|+ ...++.
T Consensus 150 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~ 224 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPGDVSVIGY 224 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 999999988754211111111 123334444555433 35777764 5566677899999999986543 344443
No 109
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.02 E-value=9.6e-05 Score=77.37 Aligned_cols=211 Identities=8% Similarity=-0.020 Sum_probs=136.7
Q ss_pred ceEEEEEEeeC---CCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 30 AVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~---s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
.+-+||++.|. +.++-.....+++.+.++. |+++. +.++..++....+....++.+++++||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35689999997 2333344555665555542 55544 45666777777777778888888888764433
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~ 184 (777)
.....+...+...++|++......+. +.+.....++...+...+++|...|.++|++|... .....+..+.+
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 33455677788889999986543321 12233567778888888999988999999999753 23445667889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.+.+++.|+.+.....+... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..|+ ...++.+
T Consensus 204 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999999865422222222 234444455555543 35676664 4556677899999999997554 4444443
No 110
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.01 E-value=0.00017 Score=72.84 Aligned_cols=206 Identities=9% Similarity=-0.005 Sum_probs=128.7
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~ 110 (777)
-+||++.|.. .++-.....+++.+.++. |+++.+ .+...++....+....++.++++++|-.......
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 72 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ- 72 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH-
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH-
Confidence 4799999864 333344556666555542 555443 4555677666666777777877766542221112
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALNDKL 188 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~~~ 188 (777)
.....+...++|+|......+ + +.+..+..++...+..++++|...|.++|++|.... ....+..+.+++.+
T Consensus 73 ~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (275)
T 3d8u_A 73 RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAM 146 (275)
T ss_dssp HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Confidence 233344557999998654321 1 234556777888888899998888999999998542 34556678899999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEE
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~ 257 (777)
++.|+.+.....+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+..++ ...++
T Consensus 147 ~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 147 IENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 9998764322222222 2344555556665543 4677664 4556678899999999986544 33343
No 111
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.01 E-value=0.00033 Score=71.96 Aligned_cols=214 Identities=8% Similarity=-0.004 Sum_probs=133.1
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~ 108 (777)
+++||++.|.. .++-.....+++.+.++. |+++ .+.++ .++..-.+....++.+++++||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 58999999975 334445667777776665 4444 44555 47777777888888888887765 444444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH-hcCC-----cEEEEEE-EeC--ccccc
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGW-----NAVSVIF-VDN--EYGRN 179 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~-~~~w-----~~vaii~-~~~--~~g~~ 179 (777)
.......+...++|+|......+.......+.+.....++...++..+++|. +++- .+++++. ... ....+
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4555556777899999876432222111112344455667777777777654 3333 3898886 332 34456
Q ss_pred hHHHHHHHHhhcce---EEEEeeecCCCCCCChhhHHHHHHHHhcCC--CeE-EEEecChhHHHHHHHHHHHcCCCCCCe
Q 004042 180 GVSALNDKLAERRC---RISYKSGIPPESGVNTGYVMDLLVKVALME--SRV-IVLHVSPSLGFQVFSVAKYLGMMGNGY 253 (777)
Q Consensus 180 ~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~v-Ivl~~~~~~~~~~l~~a~~~gl~~~~~ 253 (777)
..+.+.+.+++.|. ++.....- . .+.......++++.+.. ++. +|++.+...+.-+++++++.|+...+.
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di 226 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTK--S--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 226 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECS--S--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccC--C--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCce
Confidence 67888999988774 34332221 1 23555666666666554 455 455667777888999999999864334
Q ss_pred EEEEeC
Q 004042 254 VWIATD 259 (777)
Q Consensus 254 ~~i~~~ 259 (777)
..++.+
T Consensus 227 ~vvG~D 232 (306)
T 8abp_A 227 IGIGIN 232 (306)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 444444
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.00 E-value=8e-05 Score=77.75 Aligned_cols=210 Identities=10% Similarity=0.002 Sum_probs=130.4
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++......+++.+.++. |+++.+ .++..++....+....++.+++++||.......
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 128 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT 128 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 457899999863 444456677777766653 565544 455556655555666677778887775333222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC---ccccchHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSALN 185 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~---~~g~~~~~~~~ 185 (777)
. .....+...++|++......+ + +.+.....++...+..++++|...|.++|++|.... ....+..+.++
T Consensus 129 ~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 201 (332)
T 2hsg_A 129 E-EHVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYK 201 (332)
T ss_dssp H-HHHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHH
Confidence 2 233345567999998754322 1 123345567777788888998888999999998543 34556788899
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
+.+++.|+.+.....+... .+..+-...++++.+. .+++|+. .+...+..+++++++.|+..|+ ...++.+
T Consensus 202 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 202 RALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 9999999765321111111 1234444555665443 5677764 5666677899999999986433 3344433
No 113
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.99 E-value=0.00013 Score=74.41 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=132.9
Q ss_pred ceEEEEEEeeC-----C-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC
Q 004042 30 AVVNVGALFTL-----D-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (777)
Q Consensus 30 ~~i~IG~l~~~-----s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp 103 (777)
.+-+||+++|. . ..+-.....+++.+.++. |+++ .+.+...++..-.+....+..+++.+||-.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~ 76 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIILL 76 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 45689999998 2 333345556666555542 4544 445666555555555666667788887753
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGV 181 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~ 181 (777)
..... ......+...++|+|......+.. +.+.....+....+..++++|...|-++|+++.... ....+..
T Consensus 77 ~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 77 YSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp CCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 33222 234555667799999865433211 124456677888889999998889999999998543 2445667
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
+.|.+.+++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++ ...++.
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~ 227 (292)
T 3k4h_A 151 AGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVSF 227 (292)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEEe
Confidence 88999999998765322111111 2345555666666554 566666 45566777899999999986543 334443
No 114
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.99 E-value=5.2e-05 Score=77.43 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=119.7
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++......+++.+.++ .|+++.+. .++..++....+....++.+++++||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 456899999854 33334445555555443 25655443 155555555555666777788888775333222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~~ 186 (777)
. .....+...++|+|......+. + +..+..++...+..++++|...|.++|++|... ........+.|++
T Consensus 78 ~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 D-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2 2233455689999987543221 2 345567788888889999888899999999753 3445667788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEE
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~ 257 (777)
.+++.|+.+.....+... .+..+....++++.+ .++++|+. .+...+..+++++++.|+..++ ...++
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 219 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKDLSIVS 219 (290)
T ss_dssp HHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 999998765321112111 224444555666653 45777665 4555677789999999986543 33343
No 115
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.94 E-value=8.3e-05 Score=75.96 Aligned_cols=210 Identities=10% Similarity=0.028 Sum_probs=132.4
Q ss_pred ceEEEEEEeeCCC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
..-+||+++|... .+-.....+++.+.++. |+++. +.++..++....+....+..+++++||-.....
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~- 75 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG- 75 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-
Confidence 4568999998753 33344556666555542 55554 456666777777777778888888887533332
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
.......+...++|+|......+ + +.+..+..+....+..++++|...|-++|+++.... ....+..+.+++
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 76 EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 33445566778999998754332 1 234556678888899999999888999999997543 345566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.+++.|+.+......... .+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 150 AMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 999988764321111111 112222233444432 3567766 45666777899999999987543 4444433
No 116
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.93 E-value=0.00031 Score=73.51 Aligned_cols=208 Identities=8% Similarity=-0.013 Sum_probs=128.0
Q ss_pred CCceEEEEEEeeC--CCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 004042 28 RPAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN--CSGFIGMVEALRFMETDIVAIIGP 103 (777)
Q Consensus 28 ~~~~i~IG~l~~~--s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~--~~~~~a~~~a~~l~~~~v~aviGp 103 (777)
...+.+||++.|. +.++-.....+++.+.++ .|+++.+...++. .++..-.+....++.+++++||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4557899999996 344434555666655554 2566766655555 577766677778888889888875
Q ss_pred CChhHHHHHHHhhccCCceEEec-ccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cC-CcEEEEEEEeCc-cccc
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSF-GVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YG-WNAVSVIFVDNE-YGRN 179 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~-~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-~~-w~~vaii~~~~~-~g~~ 179 (777)
............+...++|+|.. ....+.......+.+..+.+++...+..++++|.. +| .++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332223333445568998876 32212100011233455677888888888898776 47 999999974432 3445
Q ss_pred hHHHHHHHHhhcce-EEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCC
Q 004042 180 GVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 180 ~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
..+.+.+.+++.|+ +... .+... .+..+....++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQS--AYYTK--ATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEE--EECCC--SSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEE--EecCC--CCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 66788888888886 3222 22222 223444445555543 34676664 455667788999999998
No 117
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.90 E-value=7.6e-05 Score=75.71 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=126.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||+++|.. ..+-.....+++.+.++. |+++.+...+ ++....+....+.++++++|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 346899999875 334445556665554432 5666555444 444444556667778888888 333222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 188 (777)
...+.. .++|+|......+ .+ +.+.....+....++.++++|...|.++|+++...........+.+.+.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QA---STHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SS---CSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CC---CCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755431 11 12233456778888999999888899999999865444666778899999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
++.|+.+.... +... .+..+....++++.+. .+++|+. .+...+..++++++++|+..++ ...++.+
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998766433 3222 2344555555555433 4666654 4566778899999999986543 4444433
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.89 E-value=0.00011 Score=76.59 Aligned_cols=199 Identities=11% Similarity=0.031 Sum_probs=126.1
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++......+++.+.++ .|+++.+ .++..++....+....++.+++++|| ......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 457899999864 33334556666666554 2566554 45666777766677778888899888 433222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
. +.+...++|++......+. . +.....++...+..++++|...|.++|++|.... ....+..+.+++
T Consensus 128 ~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 196 (330)
T 3ctp_A 128 E----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLD 196 (330)
T ss_dssp S----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred H----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHH
Confidence 1 3345679999987543321 1 2345567777788888988888999999998543 245566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
.+++.|+.+. ...+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+
T Consensus 197 al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 261 (330)
T 3ctp_A 197 GARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEV 261 (330)
T ss_dssp HHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 9999998765 3223222 112222222333333 35777765 445567778999999998655433
No 119
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.86 E-value=0.00053 Score=71.67 Aligned_cols=209 Identities=8% Similarity=0.001 Sum_probs=129.6
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~ 109 (777)
+.+||++.|.. .++......+++.+.++ .|+++.+ .++..++....+....++.+++++||-.......
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 127 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE 127 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 45899999864 33334556666665554 2565554 4666677666666777778888888753222111
Q ss_pred HHHHHhhc-cCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 110 HIVSYVSN-ELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 110 ~~va~~~~-~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
....... ..++|+|......+ +. +.......++...+..++++|...|.++|++|.... ....+..+.+++
T Consensus 128 -~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 201 (340)
T 1qpz_A 128 -PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMK 201 (340)
T ss_dssp -HHHHHHHTTTTSCEEEEEESSC---CC--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred -HHHHHHHhhCCCCEEEEecccC---CC--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHH
Confidence 1223333 36899998754322 11 122356677777788888888888999999997542 234566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
.+++.|+.+.....+... .+..+....+.++.+. .+++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 202 al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~ 273 (340)
T 1qpz_A 202 AMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGY 273 (340)
T ss_dssp HHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeE
Confidence 999998765322122211 2234444556666543 5677665 4556677789999999986544 334443
No 120
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.85 E-value=0.00011 Score=77.15 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=94.9
Q ss_pred HHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEe----ecccceeeecccccccceEEEEecc
Q 004042 497 VFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV----TNRTKIVDFSQPYAASGLVVVVPFR 572 (777)
Q Consensus 497 l~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~dfs~p~~~~~~~~~v~~~ 572 (777)
+.+.+++. |+++++.-..+ .+.+..++..|..|++|+++.+.... .++.+...++.++...+..+++++.
T Consensus 35 l~~~~~~~-G~~v~~~~~~~-----~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~ 108 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAM-----ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKN 108 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECT-----TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETT
T ss_pred HHHHHHhc-CCeEEEEeccc-----CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECC
Confidence 44566666 87754432333 12366789999999999998554433 3555666676777777888888776
Q ss_pred CCCCCcceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHH
Q 004042 573 KLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLI 652 (777)
Q Consensus 573 ~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~ 652 (777)
+
T Consensus 109 s------------------------------------------------------------------------------- 109 (348)
T 3uif_A 109 S------------------------------------------------------------------------------- 109 (348)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 5
Q ss_pred HHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEeeCchHHHHHHh---hhccccccccc-cCCHHHHH
Q 004042 653 IWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQEGSFAEYYLSQ---ELNISKSRLVA-LRTPEDYA 728 (777)
Q Consensus 653 ~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ 728 (777)
+|++++||+ |++||+..++..+.++.. ..+.+...+.. .-+..+.+
T Consensus 110 ----------------------------~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~ 159 (348)
T 3uif_A 110 ----------------------------TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGA 159 (348)
T ss_dssp ----------------------------CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHH
T ss_pred ----------------------------CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHH
Confidence 799999999 999999988876554432 23333222222 23677899
Q ss_pred HHHhcCCCCCCceEEEecchhhHH
Q 004042 729 KALKDGPGKGGVAAVVDERPYVEL 752 (777)
Q Consensus 729 ~~l~~~~~~~~~~a~i~~~~~~~~ 752 (777)
.+|++ |++||++.+.+.+..
T Consensus 160 ~al~~----G~vDa~~~~~~~~~~ 179 (348)
T 3uif_A 160 AALAS----GTVDGFFSLFDSYIL 179 (348)
T ss_dssp HHHHH----TSSSEEEESTTHHHH
T ss_pred HHHHc----CCCCEEEechHHHHH
Confidence 99999 999999988776643
No 121
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.84 E-value=0.00071 Score=68.29 Aligned_cols=204 Identities=10% Similarity=-0.000 Sum_probs=127.0
Q ss_pred CceEEEEEEeeCCC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 29 PAVVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 29 ~~~i~IG~l~~~s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
..+-+||+++|... .+-.....+++.+.++ .|+++.+ .+...++..-.+....+..+++++||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES--------RGYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT--------TTCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 34568999998752 2223344444444333 2555544 45566676666677777788888777543333
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc---cccchHHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE---YGRNGVSAL 184 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~---~g~~~~~~~ 184 (777)
......+...++|+|......+ +. .+..+..+....++.++++|...|-++|+++..... ......+.+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---AC---PWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TC---SSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4455566778999998754322 11 133456778888999999999999999999986543 234566778
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
++.+++.+. +. +...............+.++. .++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 213 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQTVTA 213 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSSSEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 888877754 22 111100112344444555543 35666654 56667778999999999876544433
No 122
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.84 E-value=0.0012 Score=67.34 Aligned_cols=210 Identities=10% Similarity=0.065 Sum_probs=127.6
Q ss_pred CceEEEEEEeeCC------CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc
Q 004042 29 PAVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (777)
Q Consensus 29 ~~~i~IG~l~~~s------~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG 102 (777)
..+-+||+++|.. .++-.....+++.+.+ + .|+++ .+.++..++....+....+..++|++||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~----~----~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCN----Q----HGYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHH----T----TTCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHH----H----CCCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 3456899999643 2222233444443333 2 25555 44555555555555666677778888775
Q ss_pred CCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc--cccch
Q 004042 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (777)
Q Consensus 103 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~--~g~~~ 180 (777)
...... ......+...++|+|......+.. . ..+..+..++...+..++++|...|.++|++|..... .....
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~--~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDI--D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSG--G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCccc--c--CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 322222 234455667799999875433211 0 0233455677778888889888889999999985432 34566
Q ss_pred HHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-----CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eE
Q 004042 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YV 254 (777)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~ 254 (777)
.+.+++.+++.|+.+... ... .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+..++ ..
T Consensus 150 ~~Gf~~al~~~g~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQII-ETS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEE-ecc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 788999999999887522 111 124444444444432 2577765 45666788899999999987554 44
Q ss_pred EEEeC
Q 004042 255 WIATD 259 (777)
Q Consensus 255 ~i~~~ 259 (777)
.++.+
T Consensus 224 vig~D 228 (295)
T 3hcw_A 224 TATFN 228 (295)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 44433
No 123
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.82 E-value=0.00098 Score=67.74 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=124.3
Q ss_pred ceEEEEEEeeCCC---cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~s~---~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
.+-+||+++|... ++-.....+++.+.+ + .|+++.+. +...++....+....+.++++++||-....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~----~----~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLS----T----TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHT----T----SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHH----H----cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 4568999999753 332333444443332 2 25655544 444433333333333445677766642222
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~ 184 (777)
... .....+...++|+|......+ + +.+-.+..+....+..++++|...|-++|+++.... ....+..+.+
T Consensus 77 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 149 (288)
T 3gv0_A 77 PND-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGF 149 (288)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred CCc-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHH
Confidence 111 334455668999998654322 1 223445677888889999999889999999997543 2455667889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~ 252 (777)
++.+++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 150 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 216 (288)
T 3gv0_A 150 NRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGE 216 (288)
T ss_dssp HHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTT
T ss_pred HHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 99999999876543223222 3345555667777654 466665 45566677899999999987554
No 124
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.78 E-value=0.00026 Score=72.36 Aligned_cols=208 Identities=13% Similarity=0.046 Sum_probs=129.0
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh---
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST--- 107 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~--- 107 (777)
-+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||-.....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 5899999975 333345566666665552 565544 45666777777778888888888777533321
Q ss_pred -HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC-ccccchHHHHH
Q 004042 108 -VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALN 185 (777)
Q Consensus 108 -~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~-~~g~~~~~~~~ 185 (777)
........+...++|+|......+. . .+..+..+....++.++++|...|-++|+++.... ....+..+.+.
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAE---L---AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTT---C---SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCC---C---CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 3334555566789999987543321 1 22345667788889999999889999999998543 34456678899
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--C--CeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--E--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~--~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
+.+++.|+.+....................+.++.+. + +++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 233 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSI 233 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999988764321111111000011112333443322 2 66665 445666778999999999875543333
No 125
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.78 E-value=0.0011 Score=68.31 Aligned_cols=198 Identities=8% Similarity=-0.027 Sum_probs=130.4
Q ss_pred EEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC-CChhHH
Q 004042 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP-QCSTVA 109 (777)
Q Consensus 32 i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp-~~s~~~ 109 (777)
.+||+++|.. .++-.....+++.+.++. |+++. +.+...++....+....++.+++++||-. ......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 4799999964 444456677777776663 45544 45667778777778888888888877753 333333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCce-EEecCCchHHHHHHHHHHH-hcCCcEEEEEEEeC--ccccchHHHHH
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFF-VRTTQSDSYQMTAVAEMVS-YYGWNAVSVIFVDN--EYGRNGVSALN 185 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~-~r~~p~~~~~~~a~~~~l~-~~~w~~vaii~~~~--~~g~~~~~~~~ 185 (777)
......+...++|+|......+. +.+ ..+..++...++.++++|. ..|-++|++|.... ....+..+.++
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMIND------ADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTT------SCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCC------CCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 44556667789999987543321 122 4556778888899999877 89999999997432 33445677888
Q ss_pred HHHhhc----ceEEEEeeecCCCCCCChhhHHHHHHHHhc---CCCeEEEEecChhHHHHHHHHHHHcCCC
Q 004042 186 DKLAER----RCRISYKSGIPPESGVNTGYVMDLLVKVAL---MESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 186 ~~~~~~----g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~---~~~~vIvl~~~~~~~~~~l~~a~~~gl~ 249 (777)
+.+++. ++.+....... . .+.......++++.+ .++++|+. .+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQWVD-G--WLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEECG-G--GCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeeccCC-C--cCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 888877 67765443211 1 123444444555443 35666654 4556677899999999986
No 126
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.77 E-value=0.00022 Score=72.59 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=126.8
Q ss_pred CceEEEEEEeeC--CCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 29 PAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 29 ~~~i~IG~l~~~--s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
..+-+||+++|. +..+-.....+++-+.++. |+++.+...+...+ ...+....+..+++++||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTD--CLHLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTT--CGGGCGGGSTTTCCSEEEESSCC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCch--hHHHHHHHHhccCCCEEEEecCC
Confidence 345789999993 3444445666666666553 44444443322221 11223344556688887764443
Q ss_pred hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHH
Q 004042 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (777)
Q Consensus 107 ~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~ 184 (777)
.....+... ...++|+|...... +.+..+..+....++.++++|...|-++|+++.... .......+.+
T Consensus 79 ~~~~~~~~~-~~~~iPvV~~~~~~--------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 79 NYDLEYLNK-ASLTLPIILFNRLS--------NKYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHHHHH-CCCSSCEEEESCCC--------SSSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cccHHHHHh-ccCCCCEEEECCCC--------CCCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333333 36799999876532 223456677888889999999889999999998543 3445677889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEE
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~ 257 (777)
++.+++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 150 IETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp HHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999998765321111111 2345555666666554 466665 45666777899999999987554 33343
No 127
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.75 E-value=0.0011 Score=67.44 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=127.4
Q ss_pred ceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 004042 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (777)
Q Consensus 30 ~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~ 109 (777)
.+-+||++.+.+.++-.....+++.+.++. |+++.+...+.. +. -.+....++.+++++||-.......
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~--~~-~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPS--RA-EKVAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTT--BC-HHHHHHHHTTTTEEEEEEETCCCCH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCC--HH-HHHHHHHHHhCCCCEEEEECCCCCH
Confidence 456899999444444445556666555542 566665544433 32 3445666777788887753332222
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc-cccchHHHHHHHH
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSALNDKL 188 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~-~g~~~~~~~~~~~ 188 (777)
..+. .+.. ++|+|......+ + +.+.....++...++..+++|...|-++|+++..... ...+..+.+++.+
T Consensus 80 ~~~~-~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al 151 (289)
T 3k9c_A 80 DELG-ALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAM 151 (289)
T ss_dssp HHHH-HHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred HHHH-HHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHH
Confidence 3333 3444 999998754332 1 2344566778888889999988899999999985432 4456678899999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
++.|+.+... .+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+..|+ ...++.
T Consensus 152 ~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vig~ 220 (289)
T 3k9c_A 152 DRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPADISVVGY 220 (289)
T ss_dssp HHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 9998764222 12222 2345555566666543 5666654 4556677899999999987554 334443
No 128
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.73 E-value=0.00041 Score=70.87 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=126.0
Q ss_pred ceEEEEEEeeCC-----CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 004042 30 AVVNVGALFTLD-----STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQ 104 (777)
Q Consensus 30 ~~i~IG~l~~~s-----~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~ 104 (777)
.+-+||+++|.. .++-.....+++.+.++ .|+.+.+...+. +....+....+..++|++||-..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP---GEKYQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT---TCCCHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC---hhhHHHHHHHHHcCCCCEEEEeC
Confidence 345899999942 22323445555555444 267777665543 22222333445556788777432
Q ss_pred ChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHH
Q 004042 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVS 182 (777)
Q Consensus 105 ~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~ 182 (777)
..... .....+...++|+|......+ + +.+-....++...+..++++|...|-++|+++.... ....+..+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 74 TQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22211 334556677999998754321 1 233456677888888999999889999999998643 23446678
Q ss_pred HHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.+++.+++.|+.+.....+... .+..+....+.++.+. .+++|+. .+...+..+++++++.|+..++ ...++.+
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8999999998764211111111 1234444455555443 5676654 5666778899999999987554 4444443
No 129
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.73 E-value=0.00045 Score=70.94 Aligned_cols=208 Identities=11% Similarity=0.018 Sum_probs=129.9
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 29 ~~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
..+-+||++.|.. .++-.....+++.+.++. |+++.+ .++..++..-.+....+..+++++||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3456899999965 334445666666665543 455544 45556666666667777788888877543333
Q ss_pred HHH-HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHH
Q 004042 108 VAH-IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (777)
Q Consensus 108 ~~~-~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~ 184 (777)
... .+..+. . ++|+|......+. .+..+..+....+...+++|...|-++|++|.... ....+..+.+
T Consensus 83 ~~~~~~~~l~-~-~iPvV~i~~~~~~-------~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAVL-E-GVPAVTINSRVPG-------RVGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHHH-T-TSCEEEESCCCTT-------CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHh-C-CCCEEEECCcCCC-------CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 223 344444 4 9999987654332 12345567777888888998889999999998533 3455667889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHH-----hcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEE
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-----ALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l-----~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i 256 (777)
++.+++.|+.+......... .+..+....+.++ .+. .+++|+. .+...+..+++++++.|+..++ ...+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999998765321111111 2244555566666 443 4666654 4556677899999999987543 4444
Q ss_pred Ee
Q 004042 257 AT 258 (777)
Q Consensus 257 ~~ 258 (777)
+.
T Consensus 231 g~ 232 (303)
T 3kke_A 231 GI 232 (303)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 130
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.72 E-value=0.00018 Score=74.05 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=54.8
Q ss_pred CCCChhhhhhCCCCeEEeeCchHHHHHHh---hhcccccccc-ccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC
Q 004042 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQ---ELNISKSRLV-ALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS 756 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~ 756 (777)
+|++++||. |++|++..++..+.++.. ..+.....+. .+.+..+++.+|.+ |++||++.+.+.+.+..++
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 788999999 999999888776654432 2333332332 34568889999999 9999999988888776654
Q ss_pred CCCeEEec
Q 004042 757 QCSFRIVG 764 (777)
Q Consensus 757 ~~~l~~~~ 764 (777)
.+++++.
T Consensus 170 -~~~~~l~ 176 (308)
T 2x26_A 170 -GGVRVLK 176 (308)
T ss_dssp -SSEEEEE
T ss_pred -CCcEEEe
Confidence 2455553
No 131
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.71 E-value=0.00052 Score=71.89 Aligned_cols=207 Identities=8% Similarity=-0.015 Sum_probs=129.5
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||++.|.. .++-.....+++.+.++ .|+++. +.++..++..-.+....++.+++++||-......
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~ 136 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS 136 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 356899999875 33323344444433322 256654 4466667777777777788888877664322222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC---ccccchHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSALN 185 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~---~~g~~~~~~~~ 185 (777)
. .....+...++|+|...... . .+.......++..-+..++++|...|.++|++|.... ....+..+.|.
T Consensus 137 ~-~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 209 (344)
T 3kjx_A 137 E-AARAMLDAAGIPVVEIMDSD---G---KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFT 209 (344)
T ss_dssp H-HHHHHHHHCSSCEEEEEECS---S---CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeCCC---C---CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHH
Confidence 2 34455667899999874211 1 1223456677888888899998888999999998543 33456678899
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
+.+++.|+.+.....+... .+...-...+.++.+ .++++|+ +.+...+..+++++++.|+..|+-+-+
T Consensus 210 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disv 279 (344)
T 3kjx_A 210 EVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGL 279 (344)
T ss_dssp HHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999999875433333222 223444444444433 3577766 456667888999999999876543333
No 132
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.70 E-value=0.00044 Score=71.77 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=50.9
Q ss_pred CCCChhhhhhCCCCeEEeeCchHHHHHHh---hhccccccccc-cCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhC
Q 004042 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQ---ELNISKSRLVA-LRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSS 756 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~ 756 (777)
+|++++||+ |++|++..++..+.++.. ..+.+...+.. ..+..+.+.+|++ |++||++...+.......+
T Consensus 122 ~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~----G~vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 122 ALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAA----GQVDAWAIWDPWYSALTLD 195 (324)
T ss_dssp SCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TCCSEEEEETTHHHHHHHT
T ss_pred CCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHc----CCCCEEEEccHHHHHHHhc
Confidence 899999999 999999988865554432 23333322221 2368899999999 9999999888888776554
No 133
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.68 E-value=0.0001 Score=75.80 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=54.1
Q ss_pred cceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee-EEEeecc---cceeeeccccccc
Q 004042 488 DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD-ITIVTNR---TKIVDFSQPYAAS 563 (777)
Q Consensus 488 ~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~-~~~t~~r---~~~~dfs~p~~~~ 563 (777)
..+.|+.+.+-+-+.++.|+++++. .. +....++..|.+|++|+++++ ......| .....++.++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLDVDIV--FP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEEEEEE--CC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCcEEEe--cC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 3466777877777888999885554 32 334589999999999999876 2222233 3456666677667
Q ss_pred ceEEEEeccC
Q 004042 564 GLVVVVPFRK 573 (777)
Q Consensus 564 ~~~~~v~~~~ 573 (777)
+..+++++.+
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 7888887765
No 134
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.65 E-value=0.0027 Score=64.03 Aligned_cols=198 Identities=8% Similarity=-0.067 Sum_probs=119.1
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+.+||++.|.. .++-.....+++.+.++ .|+++.+... ..++..-.+ + ++++||-......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~--~~~~~~~~~----~---~vdgiI~~~~~~~ 69 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSG--KKSHLFIPE----K---MVDGAIILDWTFP 69 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEES--TTTTTCCCT----T---TCSEEEEECTTSC
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeC--CCCHHHHhh----c---cccEEEEecCCCC
Confidence 456899999864 33333455555555443 2566655433 222211110 1 6666654222222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
...+ ..+...++|+|......+ + +.+..+..++...+..++++|...|.++|++|..+. ....+..+.+++
T Consensus 70 ~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 142 (277)
T 3cs3_A 70 TKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTR 142 (277)
T ss_dssp HHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHH
Confidence 2223 334558999998754321 1 234566677888888888988888999999998543 234566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC---CCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
.+++.|+++. ... .. .+..+....++++.+. ++++|+. .+...+..+++++++.|+..++-+.+.
T Consensus 143 ~l~~~g~~~~-~~~--~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 143 ELTRFGIPYE-IIQ--GD--FTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHTTCCEE-EEE--CC--SSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHcCCCee-EEe--CC--CChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 9999998765 211 11 2244555566666554 5676654 455667788999999998655444443
No 135
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.64 E-value=0.0014 Score=68.76 Aligned_cols=208 Identities=11% Similarity=0.010 Sum_probs=123.7
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||++.|.. .++......+++.+.++ .|+++.+ .++..++....+....++.+++++||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999864 33334455666655554 2555544 455556666666667777778887775433322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
. .....+...++|+|......+. . +.+.....++..-+..++++|...|.++|++|.... ....+..+.+++
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--D---STIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 3334455679999987543221 0 112234566777788888888888999999997542 234566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC-CeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~~ 259 (777)
.+++.|+.... .+... .+..+-...++++.+.. + .|++.+...+..+++++++.|+..|+ ...++.+
T Consensus 209 al~~~g~~~~~--v~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 209 ACANSKIGEQL--VFLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp HHHHTTCCCCE--EECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHcCcCccE--EEcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 99998873211 11111 12344445555554433 5 34456666788899999999986543 4444433
No 136
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.62 E-value=0.0027 Score=63.02 Aligned_cols=198 Identities=12% Similarity=0.031 Sum_probs=124.9
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~ 111 (777)
+||++.|.. .++-.....+++.+.++. |+++.+ .++..++..-.+....+..++++++|-.......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 71 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-- 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCcccc--
Confidence 699999864 333344556666665553 455544 3555566665556667777788877643222111
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--C-ccccchHHHHHHHH
Q 004042 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--N-EYGRNGVSALNDKL 188 (777)
Q Consensus 112 va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~-~~g~~~~~~~~~~~ 188 (777)
.......++|++...... +.+.....++...++.++++|...|.++|+++... + .......+.+++.+
T Consensus 72 -~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 72 -EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp -TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred -HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 123455689999865421 12345667778888888999888899999999843 2 34556778899999
Q ss_pred hhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
++.|+.+.. +... .+..+....++++.+.++++|+. .+...+..+++++++.|+ .+...++.+
T Consensus 143 ~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 143 KAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 999876431 2212 22444444555555556777664 455667889999999998 444455443
No 137
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.60 E-value=0.0069 Score=60.73 Aligned_cols=204 Identities=6% Similarity=0.053 Sum_probs=121.7
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~~~ 110 (777)
+||++.|.. .++-.....+++.+.++. |+++.+ .++..++..-.+....++.++|+++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998864 333334556666555543 455443 455566666555666777778988774 33332222
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEeC--ccccchHHHHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~--~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
.....+...++|+|......+ +. +.......++..-++..+++|... +-++|++|.... ....+..+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 333445567999998754321 11 112245567777788888887665 568999997432 233456778999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
.+++.|+++..... .. .+...-...++++.+ ..+++|+ +.+...+.-+++++++.|+ .+...++.
T Consensus 148 al~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~--~dv~vvGf 214 (271)
T 2dri_A 148 AVAAHKFNVLASQP--AD--FDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK--SDVMVVGF 214 (271)
T ss_dssp HHHHHTCEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC--CSCEEEEE
T ss_pred HHhcCCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC--CCcEEEEe
Confidence 99999987653321 11 123333444444433 3466654 4455667889999999998 34444543
No 138
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.55 E-value=0.00071 Score=68.28 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=117.4
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||+++|.. ..+-.....+++.+.++. |+++. +.+...++....+....+..+++++||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 456899999974 333344555555555442 45454 45666677776667777788888887753322
Q ss_pred HHHHHH-hhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHHH
Q 004042 109 AHIVSY-VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALN 185 (777)
Q Consensus 109 ~~~va~-~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~ 185 (777)
..... .+...++|+|......+. +. .+..+....++.++++|...|.++|+++... ........+.+.
T Consensus 75 -~~~~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 -ENIIENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp -HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred -hHHHHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22234 566779999987654321 11 5567778888999999888999999999854 334556678899
Q ss_pred HHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004042 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i 256 (777)
+.+++.|+.+.. .... . .+..+....+.+ ..++++|+. .+...+..++++++++|+..++-+-+
T Consensus 146 ~~l~~~~~~~~~-~~~~-~--~~~~~~~~~l~~--~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 209 (277)
T 3e61_A 146 YILDQQRIDYKM-LEAT-L--LDNDKKFIDLIK--ELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQI 209 (277)
T ss_dssp HHHHC---CEEE-EEGG-G--GGSHHHHHHHHH--HHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCccc-eecC-C--CCHHHHHHHhhc--CCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999987764 2221 1 112222222222 235777665 45666778999999999875543333
No 139
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.55 E-value=0.00047 Score=72.13 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=100.4
Q ss_pred HHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEe----ecccceeeecccccccceEEEEeccCCCCC
Q 004042 502 VNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV----TNRTKIVDFSQPYAASGLVVVVPFRKLNTG 577 (777)
Q Consensus 502 ~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~dfs~p~~~~~~~~~v~~~~~~~~ 577 (777)
.++.|+++++. .. +++..++..|.+|++|+++.+.... .++.....++.++...+..+++++...
T Consensus 59 ~~~~g~~v~~~--~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 127 (346)
T 3qsl_A 59 FKDEGLDVSIA--DF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNL--- 127 (346)
T ss_dssp HHHTTCEEEEE--EC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTC---
T ss_pred hHhhCCeEEEE--ec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcc---
Confidence 36678885554 32 4689999999999999988765443 456667777777776677788776541
Q ss_pred cceeeccCchhHHHHHHHHHHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHH
Q 004042 578 AWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFV 657 (777)
Q Consensus 578 ~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~ 657 (777)
T Consensus 128 -------------------------------------------------------------------------------- 127 (346)
T 3qsl_A 128 -------------------------------------------------------------------------------- 127 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHhhHhHHHhhhhccccCCCCChhhhhhCCCCeEEe-eCchHHHHHHh---hhcccc--ccccccCCHHHHHHHH
Q 004042 658 VLIINSSYTASLTSILTVQQLYSPINGIESLRKSDDPIGYQ-EGSFAEYYLSQ---ELNISK--SRLVALRTPEDYAKAL 731 (777)
Q Consensus 658 ~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~i~~~-~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l 731 (777)
++|++++||. |++|++. .++..+.++.. ..+..+ .+++.+.+..+.+.+|
T Consensus 128 ----------------------~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 128 ----------------------PGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ----------------------TTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ----------------------cCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 3799999999 9999998 67765544422 233332 2344566777999999
Q ss_pred hcCCCCCCceEEEecchhhHHHhhCCCCeEEe
Q 004042 732 KDGPGKGGVAAVVDERPYVELFLSSQCSFRIV 763 (777)
Q Consensus 732 ~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~ 763 (777)
++ |++||++...+......++. .++++
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~g-~~~~~ 210 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETSG-DIQII 210 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHTT-CEEEE
T ss_pred Hc----CCccEEEecchhHHHHHhCC-CeEEE
Confidence 99 99999999888876665543 34433
No 140
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.54 E-value=0.0024 Score=66.26 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=128.5
Q ss_pred eEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhH
Q 004042 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (777)
Q Consensus 31 ~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~ 108 (777)
..+||++.|.. .++-.....+++.+.++. |+++. +.++..++..-.+....++.+++.+||- |..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 45899999976 333345566666666552 55554 4456778888888888888888887774 444444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-------cCCcEEEEEEEeC--ccccc
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-------YGWNAVSVIFVDN--EYGRN 179 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-------~~w~~vaii~~~~--~~g~~ 179 (777)
.......+...++|+|......+.. . +.......+....++.++++|.. .|-++|+++.... .....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4555666778899999875533221 1 12234556777788888888766 6888999996432 33455
Q ss_pred hHHHHHHHHhhc---c-eEEEEeee-----cCCCCCCChhhHHHHHHHHhc-----CCCeEEEEecChhHHHHHHHHHHH
Q 004042 180 GVSALNDKLAER---R-CRISYKSG-----IPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKY 245 (777)
Q Consensus 180 ~~~~~~~~~~~~---g-~~v~~~~~-----~~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~l~~a~~ 245 (777)
..+.+++.+++. | +.+..... .... .+.......++++.. ..+++|+ +.+...+..+++++++
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~ 225 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKG 225 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHH
Confidence 667888888876 3 55432110 0011 122333344444433 4566654 4456677889999999
Q ss_pred cCCCCCC
Q 004042 246 LGMMGNG 252 (777)
Q Consensus 246 ~gl~~~~ 252 (777)
+|+..|+
T Consensus 226 ~g~~vP~ 232 (330)
T 3uug_A 226 VGYGTKD 232 (330)
T ss_dssp TTCSSSS
T ss_pred cCCCCCC
Confidence 9987653
No 141
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.53 E-value=0.011 Score=59.79 Aligned_cols=213 Identities=11% Similarity=0.029 Sum_probs=124.3
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc-CCChhHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG-p~~s~~~~ 110 (777)
+||++.|.. .++-.....+++.+.++. |+++.+....+..++..-.+....++.++|+++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689998864 333334555666555543 45444432115566666666667778888988774 33322212
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCC-Cce-EEecCCchHHHHHHHHHHHhc-C--CcEEEEEEEeCc--cccchHHH
Q 004042 111 IVSYVSNELQVPLLSFGVTDPTLSSLQY-PFF-VRTTQSDSYQMTAVAEMVSYY-G--WNAVSVIFVDNE--YGRNGVSA 183 (777)
Q Consensus 111 ~va~~~~~~~iP~Is~~a~~~~l~~~~~-~~~-~r~~p~~~~~~~a~~~~l~~~-~--w~~vaii~~~~~--~g~~~~~~ 183 (777)
.....+...++|+|......+...-.++ ..+ -....++..-++..+++|... | -++|++|..... ......+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~G 154 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHH
Confidence 2233345579999987542211000000 012 345677777888888887766 8 899999985432 23456778
Q ss_pred HHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 184 LNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 184 ~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
+++.+++. |+++.....- . .+...-...++++.+ ..+++|+. .+...+.-+++++++.|+. .+...++.+
T Consensus 155 f~~al~~~~g~~~~~~~~~--~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 155 ATEAFKKASQIKLVASQPA--D--WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVGTD 227 (288)
T ss_dssp HHHHHHTCTTEEEEEEEEC--T--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHHHhCCCcEEEEeecC--C--ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 89999888 8876543221 1 123444444555433 34666554 4556678899999999985 445555544
No 142
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.52 E-value=0.0014 Score=66.06 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=127.8
Q ss_pred CceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 29 ~~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
..+-+||++.|.. .++-.....+++.+.++. |+++ +.+.+...++..-.+....+..+++++||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA--- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---
Confidence 3456899999975 333344555555555442 5550 34456677777777777778888888777533
Q ss_pred HHHHHHHhhccCCceEEecccC-CCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--CccccchHHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVT-DPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~-~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~ 184 (777)
.....+...++|+|..... .+ + +.+ ....+....+...+++|. .|.++|+++... .....+..+.+
T Consensus 76 ---~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 76 ---FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp ---CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred ---hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHH
Confidence 1123356679999987543 21 1 234 677788888888889888 999999999854 33455667889
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
++.+++.|+++... ..... . + ...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+
T Consensus 145 ~~~l~~~g~~~~~~-~~~~~----~-~-~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di 208 (277)
T 3hs3_A 145 TAEASKLKIDYLLE-ETPEN----N-P-YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDF 208 (277)
T ss_dssp HHHHHHTTCEEEEE-ECCSS----C-H-HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHCCCCCCCC-CccCC----c-h-HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 99999999987655 33322 1 1 344444433 35666654 556667789999999998755433
No 143
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.50 E-value=0.0018 Score=66.43 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=127.2
Q ss_pred ceEEEEEEeeCC------CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC
Q 004042 30 AVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (777)
Q Consensus 30 ~~i~IG~l~~~s------~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp 103 (777)
.+-+||++.|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....+..+++++||-.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 356899999972 333344556666555553 45444 45666666555556666677788887743
Q ss_pred CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc--cccchH
Q 004042 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGV 181 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~--~g~~~~ 181 (777)
..... ......+...++|+|...... .. +.+..+..+....+..++++|...|-++|++|..... ...+..
T Consensus 91 ~~~~~-~~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 163 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRS 163 (305)
T ss_dssp SCBTT-CHHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHH
T ss_pred CCcCC-cHHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHH
Confidence 22222 134455667799999875432 11 2234456778888888999998889999999986433 345667
Q ss_pred HHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHH-hc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEE
Q 004042 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-AL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (777)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~ 257 (777)
+.+++.+++.|+.+.. . +... .......+.++ .+ .++++|+. .+...+..+++++++.|+..++ ...++
T Consensus 164 ~Gf~~~l~~~g~~~~~-~-~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP~di~vig 236 (305)
T 3huu_A 164 VGFKQYCDDVKISNDC-V-VIKS----MNDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQLRIPEDIQTAT 236 (305)
T ss_dssp HHHHHHHHHTTCCCCE-E-EECS----HHHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHcCCCccc-E-EecC----cHHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 8899999999987543 1 2111 11133444444 32 35676654 5666777899999999987543 44444
Q ss_pred eC
Q 004042 258 TD 259 (777)
Q Consensus 258 ~~ 259 (777)
.+
T Consensus 237 ~D 238 (305)
T 3huu_A 237 FN 238 (305)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 144
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=97.50 E-value=0.0004 Score=72.06 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=100.9
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHH----CCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~----l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 540 (777)
++|++++.. + .+.+..+...+.+.+.+. +|.++ +.... +...+.+..+.+|++|++
T Consensus 32 ~~i~i~~g~--~----------gG~~~~~~~~la~~l~~~~~~~~g~~v--~v~~~------~g~~~~i~~l~~g~~D~~ 91 (327)
T 4ddd_A 32 EYILIGTGS--M----------TGVYYPIGGSICRFIASDYGKDNKIIC--SISST------TGSVYNLNSIRYSNMDIS 91 (327)
T ss_dssp EEEEEECCC--T----------TSSHHHHHHHHHHHHHHHHGGGTSEEE--EEECC------CCHHHHHHHHHTTSCSEE
T ss_pred eEEEEEeCC--C----------CCHHHHHHHHHHHHHHhccCCCCCeEE--EEEec------CcHHHHHHHHHcCCCcEE
Confidence 567777642 1 244556666777888877 67774 43332 346788999999999998
Q ss_pred EeeEEEee-c-----------ccceeeecccccccceEEEEeccCCCCCcceeeccCchhHHHHHHHHHHHHHhhheeee
Q 004042 541 VGDITIVT-N-----------RTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILE 608 (777)
Q Consensus 541 ~~~~~~t~-~-----------r~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~vWl~~~~~~~~~~~~~~~~~ 608 (777)
+....... . ..+.+.+..+++.....+++++..
T Consensus 92 ~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds----------------------------------- 136 (327)
T 4ddd_A 92 IVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSS----------------------------------- 136 (327)
T ss_dssp EEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTS-----------------------------------
T ss_pred EECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCC-----------------------------------
Confidence 76543221 1 123344555666677777777655
Q ss_pred cccCCCCCCCcccchhhHHHHHhhhhhccCcCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhh
Q 004042 609 HRINDEFRGPPKRQVITILWFSLSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESL 688 (777)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl 688 (777)
+|++++||
T Consensus 137 ------------------------------------------------------------------------~i~sl~DL 144 (327)
T 4ddd_A 137 ------------------------------------------------------------------------NISVIDDI 144 (327)
T ss_dssp ------------------------------------------------------------------------SCCSGGGG
T ss_pred ------------------------------------------------------------------------CCCCHHHh
Confidence 89999999
Q ss_pred hhCCCCeEEe-eCchHHHHHH---hhhcccccc--ccccCCHHHHHHHHhcCCCCCCceEEEecch
Q 004042 689 RKSDDPIGYQ-EGSFAEYYLS---QELNISKSR--LVALRTPEDYAKALKDGPGKGGVAAVVDERP 748 (777)
Q Consensus 689 ~~~~~~i~~~-~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~ 748 (777)
+ +++|++. .|+..+..++ +..+.+..+ .+.|.+..+++.+|.+ |++|+++....
T Consensus 145 ~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~~~ 204 (327)
T 4ddd_A 145 K--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDVIG 204 (327)
T ss_dssp T--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEEEC
T ss_pred C--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEccC
Confidence 8 8999985 5664433221 234444333 3568899999999999 99999988643
No 145
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.49 E-value=0.0045 Score=64.94 Aligned_cols=205 Identities=10% Similarity=0.034 Sum_probs=126.8
Q ss_pred eEEEEEEeeCCC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHH
Q 004042 31 VVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (777)
Q Consensus 31 ~i~IG~l~~~s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~ 109 (777)
.-+||++.|... .+-.....+++-+.++ .|+.+.+ .++..++..-.+....++.++++++|-......
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 457999998753 2223444555544444 2565544 456667776666777777888877664322222
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc--c-ccchHHHHHH
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--Y-GRNGVSALND 186 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~--~-g~~~~~~~~~ 186 (777)
......+...++|+|...... . .+.......++..-+..++++|...|-++|++|..... . ..+..+.+.+
T Consensus 139 ~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~ 212 (355)
T 3e3m_A 139 EQTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKR 212 (355)
T ss_dssp HHHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHH
Confidence 233455667899999863211 1 12234566778888888999998899999999986433 2 4567788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
.+++.|+.+.....+.... .+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+
T Consensus 213 al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~di 280 (355)
T 3e3m_A 213 AMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAVPEQV 280 (355)
T ss_dssp HHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCce
Confidence 9999998654211221110 123334444444433 35777654 566667788999999998755433
No 146
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.47 E-value=0.0042 Score=66.69 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=125.8
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
...+-+||+++|.+.++-.....+++-+.++. |+.+.+...+... +....+..++|++||-..
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~--- 84 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADF--- 84 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEET---
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEec---
Confidence 34578999999966655556677777666654 4555554433221 124455666888877522
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCcc----ccchHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY----GRNGVSA 183 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~----g~~~~~~ 183 (777)
........+...++|+|......+... ..+.+-.+..++...+..++++|...|-++|++|...... ..+..+.
T Consensus 85 ~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 85 DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 223345566778999998765432211 1133455677788888999999999999999999754332 4567788
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
+++.+++.|+........... ..+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 163 f~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~~-~nD~~A~g~~~al~~~G~~vP~disvig~ 238 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGIIA-VTDARARHILQVCEHLHIPVPEKLCVIGI 238 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEEE-SSHHHHHHHHHHHHHHTCCTTTTSEEEES
T ss_pred HHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEEE-EecHHHHHHHHHHHHcCCCCCceEEEEee
Confidence 999999998764322211111 0122233344444332 35676654 5566777889999999986544 444443
No 147
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.47 E-value=0.00022 Score=74.70 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=49.9
Q ss_pred CCCChhhh-hhCCCCeEEeeCchHHHHH-H---hhhccccc--cccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHH
Q 004042 681 PINGIESL-RKSDDPIGYQEGSFAEYYL-S---QELNISKS--RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 753 (777)
Q Consensus 681 ~i~s~~dl-~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~ 753 (777)
+|++++|| + |++||+..++....++ + +..+..+. +++.+ +..+.+.+|++ |++||++...+.....
T Consensus 144 ~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~ 216 (341)
T 3un6_A 144 HLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGALG 216 (341)
T ss_dssp CGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHH
T ss_pred CCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHHH
Confidence 78999999 8 9999999865444322 1 22333322 33333 56789999999 9999999998888776
Q ss_pred hhCCC
Q 004042 754 LSSQC 758 (777)
Q Consensus 754 ~~~~~ 758 (777)
..+..
T Consensus 217 ~~~~~ 221 (341)
T 3un6_A 217 EKLGK 221 (341)
T ss_dssp HHSSC
T ss_pred HhcCC
Confidence 66543
No 148
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.46 E-value=0.0079 Score=61.95 Aligned_cols=207 Identities=12% Similarity=0.008 Sum_probs=114.1
Q ss_pred ceEEEEEEeeC---CC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 004042 30 AVVNVGALFTL---DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (777)
Q Consensus 30 ~~i~IG~l~~~---s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~ 105 (777)
++.+||+++|. +. .+-.....+++.+.++. |+++.+. ++..+ ....+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~-~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTD-AEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSG-GGHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCH-HHHHHHHHHHHHcCCCEEEECCh
Confidence 35689999972 22 33334455555554442 4555443 33222 23345566777788888886432
Q ss_pred hhHHHHHHHhhcc-CCceEEecccCCCCCCCCCCCceEEecCCchHHHHHH----HHHHHhcCC-cEEEEEEEe-Ccccc
Q 004042 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAV----AEMVSYYGW-NAVSVIFVD-NEYGR 178 (777)
Q Consensus 106 s~~~~~va~~~~~-~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~----~~~l~~~~w-~~vaii~~~-~~~g~ 178 (777)
.. ..++..++.. -++|++......+ + .+++-....... ++..+ +.++.+.|- ++|++|... .....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~d~~-~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVFGQN-EGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEECHH-HHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEechH-HHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 2224444444 3899987643221 0 123333333333 33333 466777787 899999743 23344
Q ss_pred chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 179 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
...+.+++.+++.|..+.....+... ..+...-....+++.+.++++|+.. ....+.-++++++++|+. +.-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 56778888888877544322222211 0112334455566666678877654 444566688899988876 4434443
No 149
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.43 E-value=0.0061 Score=63.33 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=126.3
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
.+-+||++.|.. .++-.....+++.+.++. |+.+.+. ++.. +..-.+....+..+++++||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 356799999975 333345566666666553 5655554 4444 555555666777778888876433
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~ 186 (777)
...+...++|+|......+. +.+.....++...+..++++|...|-++|++|.... ....+..+.+.+
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34456779999987543321 223345667777888889999889999999998543 234566788999
Q ss_pred HHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC-CeEEEEecChhHHHHHHHHHHHcCCCCCC-eEEEEe
Q 004042 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (777)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~~~~~~~~l~~a~~~gl~~~~-~~~i~~ 258 (777)
.+++.|+.... ... . .+..+....+.++.+.. +++|+. .+...+..+++++++.|+..|+ ...++.
T Consensus 199 al~~~g~~~~~--~~~-~--~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~ 266 (333)
T 3jvd_A 199 AASIYGAEVTF--HFG-H--YSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDVVIGGY 266 (333)
T ss_dssp HHHHTTCEEEE--EEC-C--SSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHCCCCEEE--ecC-C--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 99999987221 101 1 12445555555554433 676654 5566677899999999987554 444443
No 150
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.43 E-value=0.0041 Score=64.83 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=127.6
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~ 108 (777)
..-+||++.|.. .++-.....+++.+.++. |+++. +.++..++..-.+....++.+++++||-......
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 346799999875 333345666776666552 56554 4566677777777777788888887664222211
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC-ccccchHHHHHHH
Q 004042 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALNDK 187 (777)
Q Consensus 109 ~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~-~~g~~~~~~~~~~ 187 (777)
......+...++|+|...... +. +.. ....++...+..++++|...|.++|+++.... ....+..+.+.+.
T Consensus 131 -~~~~~~l~~~~iPvV~~~~~~----~~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 202 (339)
T 3h5o_A 131 -EPFERILSQHALPVVYMMDLA----DD--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAA 202 (339)
T ss_dssp -TTHHHHHHHTTCCEEEEESCC----SS--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCCCCEEEEeecC----CC--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHH
Confidence 133445667899999864321 11 122 56677888888899999888999999998643 3344567788999
Q ss_pred HhhcceEEEE-eeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 188 LAERRCRISY-KSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 188 ~~~~g~~v~~-~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
+++.|+.... ....... .+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..|+-+
T Consensus 203 l~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~di 269 (339)
T 3h5o_A 203 LDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERL 269 (339)
T ss_dssp HHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCE
Confidence 9998872110 0011111 223444445555543 35677664 556677889999999998765433
No 151
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.41 E-value=0.014 Score=60.83 Aligned_cols=202 Identities=12% Similarity=-0.001 Sum_probs=118.6
Q ss_pred CCCceEEEEEEeeCC---CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcC
Q 004042 27 ARPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP 103 (777)
Q Consensus 27 ~~~~~i~IG~l~~~s---~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp 103 (777)
+...+.+||++++-. ..+......|++.+.++.+ -++++.+.++..+.....+....++++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 456789999999743 2333455666666655542 23566666666555566777888888999999986
Q ss_pred CChhHHHHHHHhhccC-CceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH-h-cCCcEEEEEEEeC-ccccc
Q 004042 104 QCSTVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-Y-YGWNAVSVIFVDN-EYGRN 179 (777)
Q Consensus 104 ~~s~~~~~va~~~~~~-~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~-~-~~w~~vaii~~~~-~~g~~ 179 (777)
. .....++..++..+ ++|++...... . .+++...... ..++..++-.+. + -+-++|++|...+ +....
T Consensus 94 g-~~~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~ 165 (356)
T 3s99_A 94 S-FGYMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQ 165 (356)
T ss_dssp S-GGGHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHH
Confidence 4 34455666776665 78888654321 1 1344333332 234444444321 1 1247999998533 22334
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCC
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
....|.+.++..+..+.....+... -.+...-....+.+.+.++|+|+...+.. -++++|++.|.
T Consensus 166 ~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 166 GINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 5677888887765443322222211 01245555667777778999888876654 57899998774
No 152
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.26 E-value=0.00036 Score=58.33 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=63.3
Q ss_pred HHHHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHh
Q 004042 595 CFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSI 672 (777)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~ 672 (777)
+.+++.+++++.+|+..+ .....++.+++|++..+++..|. ..|.+..+|++..+|.++++.+.+...+.+++.
T Consensus 17 ~~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~ 92 (103)
T 2k1e_A 17 KVLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATD 92 (103)
T ss_dssp HHHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777776543 23345789999999999998873 389999999999999999999999999999999
Q ss_pred hhhcc
Q 004042 673 LTVQQ 677 (777)
Q Consensus 673 l~~~~ 677 (777)
++...
T Consensus 93 ~~~~~ 97 (103)
T 2k1e_A 93 FVRRE 97 (103)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 88654
No 153
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.25 E-value=0.014 Score=60.93 Aligned_cols=201 Identities=8% Similarity=0.028 Sum_probs=116.3
Q ss_pred ceEEEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-ChHHHHHHHHHHHhcCcEEEE--cCCC
Q 004042 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAII--GPQC 105 (777)
Q Consensus 30 ~~i~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~avi--Gp~~ 105 (777)
.+.+||++.|.- .++-.....+++.+.++ .|+++.+. +... ++..-.+....++.+++++|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 356899999864 22223444555544443 26666554 3333 234444455667777777665 3433
Q ss_pred hhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc--cccchHHH
Q 004042 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (777)
Q Consensus 106 s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~--~g~~~~~~ 183 (777)
... .....+...++|++...... +...+ ....++..-+...+++|...|.++|++|..... ...+..+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22333445789999865321 11222 344566667777888888889999999985432 34456778
Q ss_pred HHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC--CCeEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004042 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (777)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~~~ 254 (777)
|++.+++.|+.+.... ... .+..+-...+.++.+. .+++|+. .+...+.-+++++++.|+..|+-+
T Consensus 201 f~~al~~~gi~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~di 268 (349)
T 1jye_A 201 WHKYLTRNQIQPIAER--EGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADI 268 (349)
T ss_dssp HHHHHHHTTCCCSEEE--ECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHHHcCCCccccc--cCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcE
Confidence 9999999987543221 111 1233333344444333 4677664 455667789999999998655433
No 154
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.19 E-value=0.037 Score=56.15 Aligned_cols=196 Identities=13% Similarity=0.014 Sum_probs=110.5
Q ss_pred ceEEEEEEeeC--CC-cchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 004042 30 AVVNVGALFTL--DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (777)
Q Consensus 30 ~~i~IG~l~~~--s~-~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s 106 (777)
.+.+||++.|- +. ++-.....+++.+.++. |+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 35689999983 22 44445556666555442 45544 34444444444556677778899999985433
Q ss_pred hHHHHHHHhhccC-CceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHh-cCCcEEEEEEEeCccccchHHHH
Q 004042 107 TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGVSAL 184 (777)
Q Consensus 107 ~~~~~va~~~~~~-~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~-~~w~~vaii~~~~~~g~~~~~~~ 184 (777)
...++..++..+ ++|++...... .. +++-........-+.....++.+ .+-++|++|...... . ..+.+
T Consensus 74 -~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 -FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp -HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 233455555544 88998764321 11 23333334444333333333333 256899999854322 2 77888
Q ss_pred HHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcC
Q 004042 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (777)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~g 247 (777)
++.+++.|.. .....+... ..+...-....+++.+.++++|+.. +...+.-+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYPA-GDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHHHHHHHHHcC
Confidence 9999888875 322222211 0123344455666666678877654 4445666888999888
No 155
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.18 E-value=0.00046 Score=70.71 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=125.9
Q ss_pred ceEEEEEEeeCCC-cchh-hHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 30 AVVNVGALFTLDS-TIGR-VAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 30 ~~i~IG~l~~~s~-~~g~-~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
.+-+||++.|... .+-. ....+++.+.++. |+++. +.++..++....+....+..+++++||-.....
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 3568999999763 3323 6677777666653 55554 445666777767677777788887776422221
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCc--cccchHHHHH
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALN 185 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 185 (777)
.. ....+...++|+|......+.. +.+..+..++...+..++++|...|.++|++|..... ......+.++
T Consensus 82 ~~--~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (301)
T 3miz_A 82 RI--VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFR 154 (301)
T ss_dssp EE--CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHH
T ss_pred cH--HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHH
Confidence 11 3345567799999875433211 0233456778888889999999999999999985433 3446678899
Q ss_pred HHHhhcceEEEEeeecCC---CCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004042 186 DKLAERRCRISYKSGIPP---ESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (777)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~---~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~gl~~~~ 252 (777)
+.+++.|+.+.....+.. ............+.++.+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 155 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 225 (301)
T 3miz_A 155 RTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQ 225 (301)
T ss_dssp HHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 999988875321111111 100111111133444433 35676654 4556677899999999986443
No 156
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.08 E-value=0.0014 Score=56.63 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccC--cCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 598 VVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
++.+.+++.+|+..+ ++...++.+++|++..+++..| ...|.+..+|++..+|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677776432 2334579999999999999776 3389999999999999999999999999999999976
Q ss_pred cc
Q 004042 676 QQ 677 (777)
Q Consensus 676 ~~ 677 (777)
..
T Consensus 117 ~~ 118 (122)
T 2ih3_C 117 RE 118 (122)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 157
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.88 E-value=0.0029 Score=56.95 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=61.5
Q ss_pred HHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 598 VVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
++.+++++.+|+..+ .+...++.+++|++..+++..|. ..|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777776542 22345789999999999998873 389999999999999999999999999999999986
Q ss_pred cc
Q 004042 676 QQ 677 (777)
Q Consensus 676 ~~ 677 (777)
..
T Consensus 140 ~~ 141 (155)
T 2a9h_A 140 RE 141 (155)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 158
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.73 E-value=0.042 Score=56.57 Aligned_cols=217 Identities=11% Similarity=-0.005 Sum_probs=125.5
Q ss_pred CceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCC---CC--CEEEEEEccCCCCh-----HHHHHHHHHHHhc-Cc
Q 004042 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL---HG--TKLNITMQSSNCSG-----FIGMVEALRFMET-DI 97 (777)
Q Consensus 29 ~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil---~g--~~i~~~~~D~~~~~-----~~a~~~a~~l~~~-~v 97 (777)
.++++||++.+--+. .....++++..+++-|..+... .| ..+.+++..+-.++ ..+++...++... ++
T Consensus 10 ~~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 346999998776543 3577899999999999855321 01 22344444433333 2345556666655 78
Q ss_pred EEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCC--CCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeC-
Q 004042 98 VAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS--LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN- 174 (777)
Q Consensus 98 ~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~--~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~- 174 (777)
.+||.-............+...+++.|-+.+....... ..+..+ .+..++..-+...+++|.+.|-++|++|....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCce-EEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 87776433222233344455555555443332111000 001122 46667777788888999999999999998543
Q ss_pred -cc--ccchHHHHHHHHhhcceEEEEeeecCCCCCCChhh---HHHHHHH-----Hhc-CCCeEEEEecChhHHHHHHHH
Q 004042 175 -EY--GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGY---VMDLLVK-----VAL-MESRVIVLHVSPSLGFQVFSV 242 (777)
Q Consensus 175 -~~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d---~~~~l~~-----l~~-~~~~vIvl~~~~~~~~~~l~~ 242 (777)
.+ .....+.+++.+++.|+.+.....-.+. .... ....+.+ +++ ..++. |.+++...+.-++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~~~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG~ika 243 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDKNKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEVILTK 243 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHHHHHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHHHHHHHHHhccccchhhccCCCcE-EEECCHHHHHHHHHH
Confidence 22 3346778999999999987654322222 1122 2222221 112 23344 445666778889999
Q ss_pred HHHcCCCCC
Q 004042 243 AKYLGMMGN 251 (777)
Q Consensus 243 a~~~gl~~~ 251 (777)
+.+.|+..|
T Consensus 244 l~e~Gi~VP 252 (371)
T 3qi7_A 244 ALELKYIVA 252 (371)
T ss_dssp HHHHCCBBC
T ss_pred HHHcCCccC
Confidence 999997544
No 159
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.68 E-value=0.007 Score=63.80 Aligned_cols=212 Identities=11% Similarity=0.046 Sum_probs=118.8
Q ss_pred ceEEEEEEeeCCCc--chhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChh
Q 004042 30 AVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (777)
Q Consensus 30 ~~i~IG~l~~~s~~--~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~ 107 (777)
.+-+||+++|.... ....+...+...+++.=+ |+.+.+...+...+. .-.+....+..+++++||-.....
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCCC
Confidence 35679999997522 112233333333433221 566776655533321 223345556666776655322211
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEe--------------
Q 004042 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD-------------- 173 (777)
Q Consensus 108 ~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~-------------- 173 (777)
.. .....+...++|+|...... .. +.+-....++..-+..++++|...|-++|++|...
T Consensus 140 ~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~ 212 (366)
T 3h5t_A 140 GD-PHIDAIRARGLPAVIADQPA---RE---EGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRER 212 (366)
T ss_dssp TC-HHHHHHHHHTCCEEEESSCC---SC---TTCCEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHH
T ss_pred Ch-HHHHHHHHCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccc
Confidence 11 23344556699999865422 11 22334567778888889999999999999999832
Q ss_pred -----CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHHHHHHHHHHc
Q 004042 174 -----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYL 246 (777)
Q Consensus 174 -----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~l~~a~~~ 246 (777)
.....+..+.+++.+++.|+.+.....+... ..+..+-...++++.+ ..+++|+. .+...+..+++++++.
T Consensus 213 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~ 290 (366)
T 3h5t_A 213 LENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECW-INNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSV 290 (366)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEES-SCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcC-CCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHc
Confidence 2234456788999999988763210001000 0123333444455433 35777665 4556677899999999
Q ss_pred CCCCCC-eEEEE
Q 004042 247 GMMGNG-YVWIA 257 (777)
Q Consensus 247 gl~~~~-~~~i~ 257 (777)
|+..|+ ...++
T Consensus 291 G~~vP~disvig 302 (366)
T 3h5t_A 291 GKSAPADLSLTG 302 (366)
T ss_dssp TCCTTTTCEEEE
T ss_pred CCCCCCceEEEE
Confidence 987554 33443
No 160
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.63 E-value=0.0047 Score=54.77 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
+.+.+++.+++.. ......++.+++|++..+++.-|. ..|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665533 223345789999999999998763 389999999999999999999999999999988754
No 161
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.56 E-value=0.0076 Score=62.20 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCCChhhhhhCCCCeEEee-CchHHHH---HHhhhcccc-ccccccCCHHHHHHHHhcCCCCC----CceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQE-GSFAEYY---LSQELNISK-SRLVALRTPEDYAKALKDGPGKG----GVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~-~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~----~~~a~i~~~~~~ 750 (777)
++|++++|| ++||+.. ++....+ +.+..+.+. .++..+++..+.+.+|.+ | ++||++.+....
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~ 181 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTS 181 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccc
Confidence 379999999 7899986 6644322 212233332 244456678899999999 8 999987765444
Q ss_pred HHHhhCCCCeEEecc
Q 004042 751 ELFLSSQCSFRIVGQ 765 (777)
Q Consensus 751 ~~~~~~~~~l~~~~~ 765 (777)
....+ ...+..+++
T Consensus 182 ~~~~~-~g~~~~~~d 195 (321)
T 2x7q_A 182 KKYYD-NHEIKQIDQ 195 (321)
T ss_dssp HHHHH-TTSEEEEEE
T ss_pred hhhcc-CCceEEccc
Confidence 43333 234555443
No 162
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.46 E-value=0.041 Score=53.67 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=89.3
Q ss_pred HHHHHHHhcCcEEEEcCCChhHH--------HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHH
Q 004042 87 VEALRFMETDIVAIIGPQCSTVA--------HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (777)
Q Consensus 87 ~~a~~l~~~~v~aviGp~~s~~~--------~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~ 158 (777)
+.+.+|...++.+|+-+-+++.. .....+.+..++|+++. +.++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 33555555689988864444343 23345555668898862 5788888
Q ss_pred HHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCC-----CCChhhHHHHHHH-H-hcCCCeEEEEec
Q 004042 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVK-V-ALMESRVIVLHV 231 (777)
Q Consensus 159 l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~-l-~~~~~~vIvl~~ 231 (777)
++.+|.+||+++.. |.....+.+++.+++.|+++.......... ..+...+.+.+++ + ...++|+||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 89999999999974 666777888899999999987655443221 1235667788888 7 777899999988
Q ss_pred ChhHHHHHHHHHH
Q 004042 232 SPSLGFQVFSVAK 244 (777)
Q Consensus 232 ~~~~~~~~l~~a~ 244 (777)
..-....++.+.+
T Consensus 189 T~l~~l~~i~~le 201 (240)
T 3ixl_A 189 GGLLTLDAIPEVE 201 (240)
T ss_dssp TTSCCTTHHHHHH
T ss_pred CCCchhhhHHHHH
Confidence 7754444444433
No 163
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.44 E-value=0.011 Score=60.31 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCCCChhhhhh------CCCCeEEe-eCchHHH---HHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchh
Q 004042 680 SPINGIESLRK------SDDPIGYQ-EGSFAEY---YLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (777)
Q Consensus 680 ~~i~s~~dl~~------~~~~i~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~ 749 (777)
.+++|++||.+ .+.++|.. .|+..+- .|.+..+.+. ..+.|+...+++.+|.. |++|+++.+...
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNL-LTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCe-EEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 48999999974 23467776 3554332 2323334332 34578999999999999 999999999888
Q ss_pred hHHHhhCCCCeEEe
Q 004042 750 VELFLSSQCSFRIV 763 (777)
Q Consensus 750 ~~~~~~~~~~l~~~ 763 (777)
+..+++. .+++.+
T Consensus 196 ~~~~i~~-g~lr~L 208 (312)
T 2f5x_A 196 TTQQITS-GKVKAY 208 (312)
T ss_dssp HHHHHHT-TSSEEE
T ss_pred HHHHHHc-CCeEEE
Confidence 7776665 344443
No 164
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.36 E-value=0.0089 Score=61.07 Aligned_cols=77 Identities=9% Similarity=0.086 Sum_probs=51.8
Q ss_pred CCCCChhhhhhC------CCCeEEe-eCchHHH---HHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchh
Q 004042 680 SPINGIESLRKS------DDPIGYQ-EGSFAEY---YLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (777)
Q Consensus 680 ~~i~s~~dl~~~------~~~i~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~ 749 (777)
.+++|++||.+. ..++|.. .|+..+- .|.+..+... ..+.|+...+++.+|.. |++|+++.+...
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDI-VHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCe-EEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 389999999751 2357766 3554332 2323334332 34578999999999999 999999998887
Q ss_pred hHHHhhCCCCeEE
Q 004042 750 VELFLSSQCSFRI 762 (777)
Q Consensus 750 ~~~~~~~~~~l~~ 762 (777)
+..+++. ++++.
T Consensus 200 ~~~~i~~-g~lr~ 211 (314)
T 2dvz_A 200 SMPQIQA-GKLRA 211 (314)
T ss_dssp HHHHHHT-TSSEE
T ss_pred HHHHHHc-CCEEE
Confidence 7766655 33443
No 165
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.33 E-value=0.015 Score=59.17 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=52.3
Q ss_pred CCCCChhhhhhC------CCCeEEe-eCchHHH---HHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchh
Q 004042 680 SPINGIESLRKS------DDPIGYQ-EGSFAEY---YLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (777)
Q Consensus 680 ~~i~s~~dl~~~------~~~i~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~ 749 (777)
.+++|++||.+. +.++|.. .|+..+- .|.+..+... ..+.|++..+++.+|.. |++|+++.+...
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 389999999751 2356665 3554332 2323334332 34578999999999999 999999999887
Q ss_pred hHHHhhCCCCeEEe
Q 004042 750 VELFLSSQCSFRIV 763 (777)
Q Consensus 750 ~~~~~~~~~~l~~~ 763 (777)
+..+++. .+++.+
T Consensus 187 ~~~~i~~-g~lr~L 199 (301)
T 2qpq_A 187 AIPFIKA-GKLQAL 199 (301)
T ss_dssp HHHHHHT-TSEEEE
T ss_pred HHHHHhc-CCeEEE
Confidence 7766654 445544
No 166
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=96.28 E-value=0.0099 Score=52.35 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=49.8
Q ss_pred cchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhc
Q 004042 621 RQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (777)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~ 676 (777)
.+..+++|+++.+++.-|. -.|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999998763 3899999999999999999999999999999988653
No 167
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=95.86 E-value=0.032 Score=44.02 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhh
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSIL 673 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l 673 (777)
+..+++|++..++...|- ..|++..+|++..++.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998873 3899999999999999999999999999998875
No 168
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=95.82 E-value=0.03 Score=57.35 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCCChhhhhhCCCCeEE-eeCchHHHHHH---hhhccccccc--cccCCHHHHHHHHhcCCCCCCceEEEecc
Q 004042 681 PINGIESLRKSDDPIGY-QEGSFAEYYLS---QELNISKSRL--VALRTPEDYAKALKDGPGKGGVAAVVDER 747 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~a~i~~~ 747 (777)
+|++++||. ++++++ ..++..+..+. +..+.....+ ..+.+..+++.+|.+ |++|+.+...
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~~ 188 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYTV 188 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEcc
Confidence 788999999 888888 45665443332 2334433333 346678899999999 9999998764
No 169
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.75 E-value=0.023 Score=60.92 Aligned_cols=65 Identities=8% Similarity=0.199 Sum_probs=44.4
Q ss_pred hhhhhCCCCeEEe-eCchHHHHHH---hhhccccc---cccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCC
Q 004042 686 ESLRKSDDPIGYQ-EGSFAEYYLS---QELNISKS---RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQ 757 (777)
Q Consensus 686 ~dl~~~~~~i~~~-~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~ 757 (777)
+||+ |++||+. .++..+.+++ +..+.++. +++.+ ...+.+.+|++ |++||++...+......++.
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g 222 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQG 222 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHT
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcC
Confidence 7888 9999998 5765544442 12344332 33344 46789999999 99999998888776655543
No 170
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=95.60 E-value=0.029 Score=45.96 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=51.9
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcccc
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~ 679 (777)
+..+++|++..++...|. ..|.+..+|++..+|.++++.+.+...+.+++.+..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999998873 3899999999999999999999999999999998876644
No 171
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=95.43 E-value=0.042 Score=56.02 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=52.8
Q ss_pred ccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccc
Q 004042 620 KRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQL 678 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~ 678 (777)
..++.+++|+++.+++.-|. ..|.+..+|++..++.++++++.+.-.+.+++.++.++.
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998764 389999999999999999999999999999999987764
No 172
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=95.23 E-value=0.053 Score=45.89 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=48.9
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhc
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQ 676 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~ 676 (777)
+..+++|++..+++..|. ..|.+..+|++..+|.++++.+.+...+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998873 3899999999999999999999999999999988543
No 173
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=95.15 E-value=0.086 Score=58.95 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=76.1
Q ss_pred chhhHHHHHhhhhhccCcC--cccCchhHHHHHHHHHHHHHHHhHhhHh-HHHhhhhccccCCCCCh--hhh-hhCCCCe
Q 004042 622 QVITILWFSLSTLFFAHKE--NTVSTLGRLVLIIWLFVVLIINSSYTAS-LTSILTVQQLYSPINGI--ESL-RKSDDPI 695 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~p~~~~~R~~~~~~~~~~lv~~~~Y~a~-L~s~l~~~~~~~~i~s~--~dl-~~~~~~i 695 (777)
++.+++||++.+++..|.. .|.+..+|++.++|.++++.+..+..+. ++++++.+......... ... ......+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hv 130 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHI 130 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCE
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeE
Confidence 6899999999999988743 7999999999999999999998888777 55555443222111111 111 1112234
Q ss_pred EEee-CchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCC-CceEEEecchhhHH
Q 004042 696 GYQE-GSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKG-GVAAVVDERPYVEL 752 (777)
Q Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~a~i~~~~~~~~ 752 (777)
.+.- |....... +........+...+..++.++.+++ . +..++..|...-+-
T Consensus 131 iI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~~~~~ 184 (565)
T 4gx0_A 131 LIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPTDAHV 184 (565)
T ss_dssp EEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTTCHHH
T ss_pred EEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCCCHHH
Confidence 4443 33333333 2222222334445666667777776 6 67777777654333
No 174
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=95.11 E-value=0.023 Score=57.20 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=36.7
Q ss_pred hhhhhCCCCeEEe-eCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecc-hhhH
Q 004042 686 ESLRKSDDPIGYQ-EGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER-PYVE 751 (777)
Q Consensus 686 ~dl~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~-~~~~ 751 (777)
+||+ |++||+. .++..+.+++.... ..++ .+.+..+...+|.+ |++||.+... +.+.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~-~~~~~~~~~~al~~----G~vDa~~~~~~~~~~ 157 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEP-VEMPFDRIIQAVLD----EEVDAGLLIHEGQIT 157 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEE-EECCGGGHHHHHHT----TSSSEEEECSGGGGT
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCce-EecCHHHHHHHHHc----CCCCEEEEechHHhH
Confidence 7888 9999996 45544443532111 1233 23466789999999 9999988554 4444
No 175
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.95 E-value=0.12 Score=54.15 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=45.0
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.+|++++||+ |++|.+. +.....+++ ..+.. ... -...|.+.+|++ |.+|+.....+.+
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~~-~lGa~---pv~-~~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVFA-AAGAS---TVL-LPGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHHH-HTTCE---EEC-CCGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHHH-HcCCe---eee-cChHHHHHHHHc----CCcceeecCCcch
Confidence 5899999999 9999988 555556663 44443 222 267789999999 9999999877766
No 176
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=94.83 E-value=0.069 Score=53.76 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=52.2
Q ss_pred cccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcc
Q 004042 619 PKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (777)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~ 677 (777)
...++.+++|+++.+++.-|. ..|.+..+|++++++.++++++.+...+.+++.++.++
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345789999999999997763 38999999999999999999999999999999998754
No 177
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=94.76 E-value=0.15 Score=52.88 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=41.9
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHH---hhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhH
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLS---QELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVE 751 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~ 751 (777)
+.+++++||+ |++||+. ++..+.++. +..+.++..+...+...+...++.+ |++||.+.-.+...
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~ 168 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQ 168 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchH
Confidence 4677899999 9999986 444443332 2334444444333334456788999 99999987665443
No 178
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=94.31 E-value=0.12 Score=49.96 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=57.6
Q ss_pred HHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccC--cCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 599 VVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
+.+.+++.+|+..+ ++...+..+++|++..+++.-| ...|.+..+|++..++.++++.+.+...|.+++.++.
T Consensus 146 ~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554221 2334579999999999999776 3489999999999999999999999999999998875
No 179
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=94.18 E-value=0.0036 Score=57.36 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=50.4
Q ss_pred cccchhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 619 PKRQVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
...++.+++|++..+++..|. ..|.+..+|++.++|.++++++.++..+.+++.++.
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999998873 389999999999999999999999999999988864
No 180
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=94.07 E-value=0.036 Score=57.50 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=47.4
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcccc
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~ 679 (777)
++.+++|+++.+++..|. ..|.+..+|++.++|.++++++.++..+.+++.++.....
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998773 3899999999999999999999999999999998876544
No 181
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=93.93 E-value=0.1 Score=46.52 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=46.1
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhh
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSIL 673 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l 673 (777)
++.+++|++..+++..|. ..|.+..+|++..+|.++++.+.+...+.+++.+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998873 3899999999999999999999998888887654
No 182
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=93.85 E-value=0.21 Score=53.46 Aligned_cols=68 Identities=10% Similarity=0.309 Sum_probs=46.0
Q ss_pred hhhh-hhCCC--CeEEe-eCchHHHHHH---hhhccccc---cccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHh
Q 004042 685 IESL-RKSDD--PIGYQ-EGSFAEYYLS---QELNISKS---RLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFL 754 (777)
Q Consensus 685 ~~dl-~~~~~--~i~~~-~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~ 754 (777)
++|| ++.|+ +||+. .++..+.+++ ...+.++. +++.+ ...+.+.+|++ |++||++...+......
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 65677 89997 6776544332 23344432 23333 67889999999 99999998888776655
Q ss_pred hCC
Q 004042 755 SSQ 757 (777)
Q Consensus 755 ~~~ 757 (777)
++.
T Consensus 228 ~~g 230 (429)
T 2i49_A 228 TEN 230 (429)
T ss_dssp HTT
T ss_pred HCC
Confidence 543
No 183
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.72 E-value=0.76 Score=45.57 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHhcCcEEEEcCCChhHHH--------HHHHhhccC-----CceEEecccCCCCCCCCCCCceEEecCCchHHHHH
Q 004042 88 EALRFMETDIVAIIGPQCSTVAH--------IVSYVSNEL-----QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTA 154 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~--------~va~~~~~~-----~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a 154 (777)
.+..|...++++|+-+-++.... ....+.+.. ++|+++. +.+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 34445555888887644443221 123333444 7888862 356
Q ss_pred HHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCC-----CCChhhHHHHHHHHhcCCCeEEEE
Q 004042 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALMESRVIVL 229 (777)
Q Consensus 155 ~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~l~~~~~~vIvl 229 (777)
+++.++..|-+||+++. .|.....+.+++.+++.|+++.......... ......+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66667778889999995 4555556678888889999986554433210 123456777888887778999999
Q ss_pred e-cChhHHHHHHHH
Q 004042 230 H-VSPSLGFQVFSV 242 (777)
Q Consensus 230 ~-~~~~~~~~~l~~ 242 (777)
. |..-....+..+
T Consensus 214 g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 214 SCAVQMPSLPLVET 227 (273)
T ss_dssp ESSSSSCCTTHHHH
T ss_pred cCCCCcchHHhHHH
Confidence 9 877544333333
No 184
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=93.63 E-value=0.2 Score=50.85 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=51.7
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhccc
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQL 678 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~ 678 (777)
++.+++|+++.+++.-|. ..|.+..+|++..++.++++++.+.-++.+++.++.++.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999997763 389999999999999999999999999999999987653
No 185
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.03 E-value=0.45 Score=48.18 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=42.3
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~ 749 (777)
.+|++++||+ |+||.+. ++.....++ ..+.. .+ .-...|.+.+|++ |.+|+.......
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv-~~~~~E~y~ALq~----G~vDg~~~~~~~ 186 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMAA-LMGAV---PT-TVQTPEVPQAFST----GVIDAMLTSPAT 186 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHHH-HTTSE---EE-ECCGGGHHHHHHT----TSCSBEEECHHH
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHHH-HcCCc---ce-eccHHHHHHHHhc----ceeeeEecCccc
Confidence 5899999999 9999997 655556663 44432 22 2367899999999 999999665433
No 186
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=93.01 E-value=0.43 Score=48.28 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=42.6
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPY 749 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~ 749 (777)
.+|++++||+ |+||.+. ++.....++ ..+.. .. .-...|.+.+|++ |.+|+.......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv-~~~~~E~y~ALq~----G~vDg~~~~~~~ 185 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAE-LVGAQ---PV-TVQQAELAQAMAT----GVIDSYMSSGST 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHH-HHTCE---EE-ECCGGGHHHHHHT----TSCSEEEECHHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHH-HcCCc---ce-ecCHHHHHHHHhc----CeeeEEecCccc
Confidence 5899999999 9999987 555556663 44432 22 2367899999999 999999665443
No 187
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=92.48 E-value=0.17 Score=52.83 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=59.1
Q ss_pred HHHHHhhheeeecccCCCCCCCcccchhhHHHHHhhhhhccC--cCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhh
Q 004042 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILT 674 (777)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~ 674 (777)
+++.+.+.+.+++..+++ ...++.+++|+++.+++.-| ...|.+..+|++..++.++++++.++..+.+++.+.
T Consensus 140 ~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666543221 12468899999999999776 348999999999999999999999999999999887
Q ss_pred hc
Q 004042 675 VQ 676 (777)
Q Consensus 675 ~~ 676 (777)
..
T Consensus 216 ~~ 217 (355)
T 3beh_A 216 QE 217 (355)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 188
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=91.35 E-value=0.39 Score=50.18 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhH
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVE 751 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~ 751 (777)
.+|+|++||+ |++|.+. + .....++ ..+..+. .-...|.+.+|++ |.+|+.....+...
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~~-~lGa~pv----~~~~~e~y~ALq~----G~VDg~~~~~p~~~ 221 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVME-RLGVVPQ----QIAGGDIYPALEK----GTIDATEWVGPYDD 221 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHHH-TTTCEEE----CCCTTSHHHHHHH----TSCSEECCSCHHHH
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHHH-HcCCcce----ecCHHHHHHHHhC----CCcceeeccCccch
Confidence 5899999999 9999988 4 4556663 4454321 2356688999999 99999986655543
No 189
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=91.13 E-value=3 Score=38.82 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=46.2
Q ss_pred eeeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEe
Q 004042 492 GFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVP 570 (777)
Q Consensus 492 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~ 570 (777)
.+-.+++..+.++. +.+ +++.. +....+.+.|.+|++|+++.... .....+. ..++....+.++++
T Consensus 17 ~~l~~~l~~~~~~~P~i~--i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMP--LMLEE-------NYTHTLTESLKRGDVDAIIVAEP---FQEPGIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHHSTTCC--EEEEE-------ECHHHHHHHHHHTSSSEEEEESS---CCCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe-------CCcHHHHHHHHcCCCCEEEEcCC---CCCCCee-EEEeeeceEEEEEe
Confidence 34567788888776 445 44443 35788999999999999886432 2222232 35677788888887
Q ss_pred ccC
Q 004042 571 FRK 573 (777)
Q Consensus 571 ~~~ 573 (777)
+..
T Consensus 84 ~~~ 86 (219)
T 3jv9_A 84 KGH 86 (219)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 190
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=90.54 E-value=0.4 Score=52.43 Aligned_cols=57 Identities=7% Similarity=0.098 Sum_probs=50.0
Q ss_pred cccchhhHHHHHhhhhhccC--cCcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 619 PKRQVITILWFSLSTLFFAH--KENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
...++.+++|+++.+++.-| ...|.+..+|++.++++++++++.+++.|.+.+.+..
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999776 3389999999999999999999999999999987765
No 191
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=90.13 E-value=2.2 Score=40.94 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=85.6
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-Ch------H----HHHHHHHHHHhcCcEE
Q 004042 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SG------F----IGMVEALRFMETDIVA 99 (777)
Q Consensus 31 ~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-~~------~----~a~~~a~~l~~~~v~a 99 (777)
..+||++.|.++..-.+ .++...++.+.. |+..+.+.....+. .. . ...+.+..|.+.|+.+
T Consensus 6 ~~~ig~i~p~~~~~~~e----~~~~~~~~~~~~---p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~ 78 (228)
T 2eq5_A 6 KYTIGLIRVITLEDKEI----LNLHGRIIESAF---PELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDA 78 (228)
T ss_dssp CEEEEEEESSCCCCHHH----HTHHHHHHHHHC---TTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred ceEEEEEeccCccCHHH----HHHHHHHHHhhC---CCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCCE
Confidence 46899999988322111 111222222221 56666664333221 11 0 1112344455568888
Q ss_pred EEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccc
Q 004042 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRN 179 (777)
Q Consensus 100 viGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~ 179 (777)
|+-+-++. ..+..+-+..++|++.. .++.++.....+ ++|+++.......
T Consensus 79 iviaCnta--~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~-~rigVlat~~t~~-- 128 (228)
T 2eq5_A 79 IIISCAAD--PAVEKVRKLLSIPVIGA-------------------------GSSVSALALAYG-RRVGVLNLTEETP-- 128 (228)
T ss_dssp EEECSTTC--TTHHHHHHHCSSCEEEH-------------------------HHHHHHHHHTTC-SSEEEECSSSCCC--
T ss_pred EEEeCCch--HHHHHHHHhCCCCEeCc-------------------------cHHHHHHHHHhC-CeEEEEecCcccH--
Confidence 88644443 44445556668888863 122222223456 8899997643321
Q ss_pred hHHHHHHHH-hhcceEEEEeeec---CCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH
Q 004042 180 GVSALNDKL-AERRCRISYKSGI---PPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (777)
Q Consensus 180 ~~~~~~~~~-~~~g~~v~~~~~~---~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~ 235 (777)
..+++.+ ++.|.++...... ..........+...++++.+.++|+||+.|..-.
T Consensus 129 --~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 129 --KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp --HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred --HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 3467777 7777664211100 0000001234556667776678999999887754
No 192
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=90.00 E-value=1 Score=43.60 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCc-eeEEEeeEEEeec---ccceee--ecccccccceEEE
Q 004042 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLVVV 568 (777)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~---r~~~~d--fs~p~~~~~~~~~ 568 (777)
-++++.+.++-|.++++.+ +.-..++..+.+|. +|+.++.-.-..+ ....+. -..+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677777777788866554 44667888998887 9998763211111 112222 1246777888999
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 88765
No 193
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=89.43 E-value=1.6 Score=42.80 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCc-eeEEEeeEEEeec---ccceee--ecccccccceEEE
Q 004042 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLVVV 568 (777)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~---r~~~~d--fs~p~~~~~~~~~ 568 (777)
-++.+.+.++.|.++++.+ +.-..++..+.+|. +|+.+++-.-..+ ....++ -..++....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4567777777788866654 45677889999887 9998763211111 112221 1235666788888
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 88776
No 194
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=89.37 E-value=6.1 Score=39.95 Aligned_cols=126 Identities=10% Similarity=0.085 Sum_probs=80.0
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 004042 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (777)
Q Consensus 33 ~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~v 112 (777)
+||++.............|++.++++.| +..++...+..+-.++..+.+.+.+++++++.+|+..... .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVD------PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHC------TTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHC------CCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCC-CchHH
Confidence 6888876654444566899999999886 3455555544333477888889999999899998874443 33333
Q ss_pred HHhhcc-----CCceEEecccCCCCCCC---CCCCceEEecCCchHHHHHHHHHHHhcCCc
Q 004042 113 SYVSNE-----LQVPLLSFGVTDPTLSS---LQYPFFVRTTQSDSYQMTAVAEMVSYYGWN 165 (777)
Q Consensus 113 a~~~~~-----~~iP~Is~~a~~~~l~~---~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~ 165 (777)
...+.+ .++.+|.+......... ...|.+..+..+....+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 334444 67888887653322210 023556666666666677777766655554
No 195
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=89.26 E-value=3.8 Score=42.27 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=67.7
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 004042 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (777)
Q Consensus 33 ~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~v 112 (777)
+||.+.....+.-.....|+..++++.| +..++.+.+..+-.++.++.+.+..|+++++.+|+...... .+
T Consensus 151 kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv 221 (356)
T 3s99_A 151 IAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AA 221 (356)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HH
T ss_pred EEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HH
Confidence 7899988764444456889999999887 46777777766667999999999999999999998755543 45
Q ss_pred HHhhccCCceEEecccC
Q 004042 113 SYVSNELQVPLLSFGVT 129 (777)
Q Consensus 113 a~~~~~~~iP~Is~~a~ 129 (777)
...+.+.++.+|.+...
T Consensus 222 ~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 222 IQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHTTCEEEEEESC
T ss_pred HHHHHHcCCEEEEEcCc
Confidence 56667788988887554
No 196
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=89.24 E-value=0.5 Score=46.59 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=51.7
Q ss_pred chhhHHHHHhhhhhccCcC--cccCch-------hHHHHHHHHHHHHHHHhHhhHhHHHhhhhccccCCCCChhhhh
Q 004042 622 QVITILWFSLSTLFFAHKE--NTVSTL-------GRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIESLR 689 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~p~~~~-------~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~~~i~s~~dl~ 689 (777)
++.+++|+++.++...|.. .|.+.. +|++..+|.++++.+.++..+.++..+...+....+...+|+.
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 277 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKD 277 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC------
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5789999999999988643 676653 5999999999999999999999999888776665555444443
No 197
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=88.66 E-value=1.6 Score=42.72 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=31.2
Q ss_pred eeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 493 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
+..++++.+-|.+|+++++.. ++-.-+..+|.+|++|+.....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~~---------~~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTTA---------LDNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE---------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEE---------CChHHHHHHHHCCCCeEEEccc
Confidence 335677777777898866643 2356678999999999987643
No 198
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=88.17 E-value=4.5 Score=37.71 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=53.6
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+||+... + ...+..+++..+.++.. ++++++.. +....++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVECH--T------------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCCT--T------------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEehH--H------------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 35688887641 1 11345677888888773 23355543 456788999999999999864
Q ss_pred EEEeecccceeeecccccccceEEEEeccC
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
.. .....+. ..++....+.+++++..
T Consensus 65 ~~---~~~~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EA---EKQNGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CC---CCCTTEE-EEEEEEEEEEEEECTTS
T ss_pred CC---CCcCCeE-EEEeecCcEEEEecCCC
Confidence 32 2222232 35777788888887665
No 199
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=87.63 E-value=1 Score=42.88 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCc-eeEEEeeEEEeec---ccceee--ecccccccceE
Q 004042 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLV 566 (777)
Q Consensus 493 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~---r~~~~d--fs~p~~~~~~~ 566 (777)
+..++++.+.++-|.++++.. ++...++..|.+|+ +|+++..-....+ +...+. -..|+....+.
T Consensus 13 ~l~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 334677777777677755543 34678899999998 9997652111111 111111 14577778888
Q ss_pred EEEeccC
Q 004042 567 VVVPFRK 573 (777)
Q Consensus 567 ~~v~~~~ 573 (777)
+++++..
T Consensus 84 lv~~~~~ 90 (231)
T 1atg_A 84 LWSAKPG 90 (231)
T ss_dssp EEESSTT
T ss_pred EEEcCCC
Confidence 8887655
No 200
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=87.58 E-value=0.48 Score=49.45 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEec
Q 004042 727 YAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIVG 764 (777)
Q Consensus 727 ~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~~ 764 (777)
...+|.+ |++||++...+......+ .+.+++.
T Consensus 210 ~~~aL~~----G~vDA~~~~~p~~~~~~~--~g~~~l~ 241 (365)
T 2de3_A 210 QAAVLAS----GDVDALYSWLPWAGELQA--TGARPVV 241 (365)
T ss_dssp HHHHHHS----SSCSEEEEEHHHHHHHHH--TTEEESS
T ss_pred HHHHHhC----CCcCEEEEcchhHHHHHh--CCCEEEE
Confidence 6889999 999999998777655544 3455554
No 201
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=87.44 E-value=0.67 Score=48.58 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=53.0
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhh------ccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHH
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQEL------NISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELF 753 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~ 753 (777)
+.|++++||+ | ||++.++..+.+..... +. ..++..|++..+++.+|.+ |++||++.+.....-+
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~l 96 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENII 96 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHHH
Confidence 4899999999 6 99999887776553211 11 1356789999999999999 9999999998776665
Q ss_pred hhCCC
Q 004042 754 LSSQC 758 (777)
Q Consensus 754 ~~~~~ 758 (777)
...+.
T Consensus 97 e~~y~ 101 (398)
T 2xxp_A 97 ELEYP 101 (398)
T ss_dssp HHHCT
T ss_pred Hhhcc
Confidence 44433
No 202
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=86.60 E-value=11 Score=34.86 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHH
Q 004042 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (777)
Q Consensus 32 i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~ 111 (777)
.+|.++.|.. .+..-++-..++.+ ..+.+.. ++-..++..++++ .+++.+||.-. +++..
T Consensus 5 ~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~~ 64 (196)
T 2q5c_A 5 LKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSDY 64 (196)
T ss_dssp CEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHHH
T ss_pred CcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHHH
Confidence 4788888874 23444444444433 2344332 3356788889998 88999999522 23333
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhc
Q 004042 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER 191 (777)
Q Consensus 112 va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~ 191 (777)
+. +..++|+|.. ..+..+..+++...-++ + ++|+++...+.. ...+.+.+.+
T Consensus 65 lr---~~~~iPVV~I------------------~~s~~Dil~al~~a~~~-~-~kIavvg~~~~~--~~~~~~~~ll--- 116 (196)
T 2q5c_A 65 IK---KSVSIPSISI------------------KVTRFDTMRAVYNAKRF-G-NELALIAYKHSI--VDKHEIEAML--- 116 (196)
T ss_dssp HH---TTCSSCEEEE------------------CCCHHHHHHHHHHHGGG-C-SEEEEEEESSCS--SCHHHHHHHH---
T ss_pred HH---HhCCCCEEEE------------------cCCHhHHHHHHHHHHhh-C-CcEEEEeCcchh--hHHHHHHHHh---
Confidence 33 3457999964 23455566666665443 3 499999754431 2345555555
Q ss_pred ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCC
Q 004042 192 RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 192 g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~ 249 (777)
|+++... .+. +..+....++++++.+.++||-.+. ..+.|++.|+.
T Consensus 117 ~~~i~~~-~~~-----~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 GVKIKEF-LFS-----SEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp TCEEEEE-EEC-----SGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred CCceEEE-EeC-----CHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 5555432 231 3678999999999999999876432 35677888974
No 203
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=86.53 E-value=4.2 Score=38.75 Aligned_cols=88 Identities=7% Similarity=0.006 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCC-----CCChhhHHHHHHHHhcC--CC
Q 004042 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALM--ES 224 (777)
Q Consensus 152 ~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~l~~~--~~ 224 (777)
..++++.++..|-+||+++. .|.....+.+++.+++.|+++.......... ......+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46666777778889999995 4555556677888888999876554433210 01245567777777666 89
Q ss_pred eEEEEecChhHHHHHHHH
Q 004042 225 RVIVLHVSPSLGFQVFSV 242 (777)
Q Consensus 225 ~vIvl~~~~~~~~~~l~~ 242 (777)
|+||+.|..-....+..+
T Consensus 173 daIvLgCT~l~~~~~~~~ 190 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQY 190 (223)
T ss_dssp SEEEECCTTSCCTTHHHH
T ss_pred CEEEEeCCcccHHHHHHH
Confidence 999998877543333333
No 204
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=86.52 E-value=1.7 Score=44.09 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=52.5
Q ss_pred ccchhhHHHHHhhhhhccCcC--ccc--CchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcccc
Q 004042 620 KRQVITILWFSLSTLFFAHKE--NTV--STLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~--~p~--~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~ 679 (777)
..++..++||++.+++..|.+ .|. +..+|+++.+-.+.++++.+.-++.+.+.++.|+..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 357899999999999988744 675 678999999999999999999999999999987754
No 205
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=86.42 E-value=3.4 Score=39.00 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=54.9
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+||+... + ...+..+++..+.++.. ++++++.. +....++..|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~~--~------------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLPT--I------------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECTT--T------------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEeccc--c------------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 35688887641 1 12355677888888774 33355544 457889999999999999864
Q ss_pred EEEeecccceeeecccccccceEEEEeccC
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
.... ...+. +.++....+.+++++..
T Consensus 68 ~~~~---~~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAE---TEGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCC---CTTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCC---CCCeE-EEEecccCEEEEEcCCC
Confidence 3222 22222 36777788888887664
No 206
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=86.34 E-value=1.1 Score=44.48 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=43.0
Q ss_pred CCCChhhhhhCCCCeEEeeCchHH---------HHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhH
Q 004042 681 PINGIESLRKSDDPIGYQEGSFAE---------YYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVE 751 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~ 751 (777)
.|+|++||+ ++...+..++..+ .++ +..+.+...+... +..+...++++ |++|++..-.+...
T Consensus 124 ~i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~-~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~ 195 (275)
T 1sw5_A 124 GVEKISDLA--EFADQLVFGSDPEFASRPDGLPQIK-KVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSR 195 (275)
T ss_dssp TCCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHH-HHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHH
T ss_pred CCCcHHHHH--hhhcceEeccCcccccccchHHHHH-HhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcc
Confidence 799999999 6632222222211 123 2334433333333 56688999999 99999998777654
Q ss_pred HHhhCCCCeEEec
Q 004042 752 LFLSSQCSFRIVG 764 (777)
Q Consensus 752 ~~~~~~~~l~~~~ 764 (777)
.. + -+++++.
T Consensus 196 ~~--~-~~l~~L~ 205 (275)
T 1sw5_A 196 VD--L-FNLKILE 205 (275)
T ss_dssp HH--H-TTEEECB
T ss_pred hh--c-CCeEEcc
Confidence 32 2 2455554
No 207
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=86.01 E-value=2.2 Score=43.50 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=44.6
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.+|++++||+ |+||.+..+......++ ..+..+ . .-...|.+.+|++ |.+|+.....+.+
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~~-alGa~p---v-~m~~~Evy~ALq~----G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESIR-SLGAIP---V-AVNFGEIYTAVQT----RAVDGAELTYANV 207 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHHH-HHTSEE---E-CCCGGGHHHHHHT----TSCSEEEECHHHH
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHHH-HcCCEe---e-ecCHHHHHHHHHc----CCeeEEECCHHHH
Confidence 5899999999 99998875444556663 455422 1 2467799999999 9999999876554
No 208
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=85.73 E-value=8.2 Score=36.64 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=55.6
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
.++|+||+... + ...+...++..+.++. +.+ +++.. +....+++.|.+|++|+++.
T Consensus 18 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P~i~--l~~~~-------~~~~~~~~~l~~g~~Dl~i~ 74 (241)
T 3oxn_A 18 DQTFTIATTDY--A------------MQTILPFALPRIYQEAPNVS--FNFLP-------LQHDRLSDQLTYEGADLAIC 74 (241)
T ss_dssp CCEEEEEECSH--H------------HHHTHHHHHHHHHHHCTTCE--EEEEE-------CCGGGHHHHHHTSCCSEEEE
T ss_pred CceEEEEechH--H------------HHHHHHHHHHHHHHHCCCCE--EEEEE-------CCcccHHHHHHcCCCCEEEe
Confidence 46788888641 1 1245567888888886 445 44444 45788999999999999986
Q ss_pred eEEEeecccceeeecccccccceEEEEeccC
Q 004042 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
.. ......+. +.++....+.+++++..
T Consensus 75 ~~---~~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 75 RP---TGPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CC---SSCCTTEE-EEEEECCCEEEEEETTS
T ss_pred cC---CCCCccce-eEEeecccEEEEEeCCC
Confidence 32 22223333 36778888888887765
No 209
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=85.71 E-value=4.2 Score=40.36 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
..++..+-+.+|+++++.. +.-.-+..+|.+|++|+.....
T Consensus 32 ~~i~~~~Le~~G~~Ve~~~---------~~~~~~~~AL~~G~iD~~~e~w 72 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEIFS---------VTTSIMYQYLASGKIDGTVSSW 72 (280)
T ss_dssp HHHHHHHHHHTTEEEEEEE---------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE---------CCcHHHHHHHHCCCCcEEEecc
Confidence 3556666677998866643 2346678999999999987643
No 210
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=85.23 E-value=1.5 Score=43.30 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=39.0
Q ss_pred hhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEec-chhhH
Q 004042 685 IESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDE-RPYVE 751 (777)
Q Consensus 685 ~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~-~~~~~ 751 (777)
++||+ |++||+...+....++-+..-.. .++. +-...+...++.+ |++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll~~-~~~~-~~~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYAQG-FVPV-EVRYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHCSS-CEEE-ECCGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHhcc-Ccee-ecChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 78999 99999987665554432222111 1222 3345689999999 999999884 56665
No 211
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=84.92 E-value=11 Score=37.55 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=77.2
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Q 004042 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (777)
Q Consensus 33 ~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviGp~~s~~~~~v 112 (777)
+||++....... ...|++.++++.| +. +..+.+..+-.++..+.+.+.+|+++++.+|+.... ..+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D-~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGD-GYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCT-TTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCC-CCCHHH
Confidence 788887654322 6788999998876 23 555444433347788888999999989999997443 444445
Q ss_pred HHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcE
Q 004042 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (777)
Q Consensus 113 a~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~ 166 (777)
...+.+.++.+|.+......+ ...|.+..+..+....+...++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 556666778888876522111 1224565555555656666666655556653
No 212
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=84.90 E-value=1.4 Score=44.01 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=43.8
Q ss_pred hhhCCCCeEEe-eCchHHHHHHh---hhccccccccccC-CHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCe
Q 004042 688 LRKSDDPIGYQ-EGSFAEYYLSQ---ELNISKSRLVALR-TPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSF 760 (777)
Q Consensus 688 l~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l 760 (777)
|+ |++|++. .++..+.+|+. ..+. ..++.... +..+...++++ |++||.+...+.+.....+..++
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~~~~~ 164 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRKDSSL 164 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHHCTTC
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhhCCCe
Confidence 77 9999986 67765555532 2233 12333233 58899999999 99999988888777655444333
No 213
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=84.04 E-value=5 Score=40.49 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.+|+|++||+ |+||.+........+++ ..+..+ . .-...|.+.+|++ |.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~-alGa~p---v-~m~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAK-YVGASP---T-PMAFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCEE---E-ECCGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHH-HcCCee---e-ecCHHHHHHHHHc----CCcceEeccHHHH
Confidence 5899999999 99999876443456663 455432 1 2457789999999 9999999877765
No 214
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=83.88 E-value=8.5 Score=36.66 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEE
Q 004042 91 RFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI 170 (777)
Q Consensus 91 ~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii 170 (777)
.|.+.|+.+|+-+-++.... ...+-+..++|++.. .++.++.+...+-++|+++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34445898888765555432 344555668888852 2444444444567899999
Q ss_pred EEeCccccchHHHHHHHHhhcceEEE
Q 004042 171 FVDNEYGRNGVSALNDKLAERRCRIS 196 (777)
Q Consensus 171 ~~~~~~g~~~~~~~~~~~~~~g~~v~ 196 (777)
.+.. .... ..+++.+++.|+++.
T Consensus 122 aT~~--T~~~-~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 122 GTKT--TMTA-DFYIKTLEEKGLEVV 144 (226)
T ss_dssp SSTT--TTSC-HHHHHHHHTTTCEEE
T ss_pred eCHH--HHhh-hHHHHHHHHCCCEEE
Confidence 6432 2221 345667777787754
No 215
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=83.85 E-value=5.5 Score=41.65 Aligned_cols=88 Identities=16% Similarity=0.066 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCcEEEEEEEeCcccc--chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEec
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 231 (777)
.+.++++.++.+++.||+....... ...+.+.+.+++.|+++..-..+.++ .+.......++.+++.++|+||..+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3556677788899999986555554 47889999999999887433334444 4578889999999999999999876
Q ss_pred Ch--hHHHHHHHHH
Q 004042 232 SP--SLGFQVFSVA 243 (777)
Q Consensus 232 ~~--~~~~~~l~~a 243 (777)
.+ -|+..++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 65 4666666654
No 216
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.27 E-value=12 Score=29.75 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=65.2
Q ss_pred eEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHh
Q 004042 141 FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (777)
Q Consensus 141 ~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~ 220 (777)
+|-...++...-..++.-++..|. ++.++|+|.+- .....-.+.+++.|+.+...+ +..||+..++++-
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrtve--------dkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRTVE--------DKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEECC--------SHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceeeec--------cHHHHHHHHHHHH
Confidence 444556677777778887888875 67778877642 122223345788898876432 3788988888885
Q ss_pred c--CCCeEEEEecCh--hHHHHHHHHHHHcCC
Q 004042 221 L--MESRVIVLHVSP--SLGFQVFSVAKYLGM 248 (777)
Q Consensus 221 ~--~~~~vIvl~~~~--~~~~~~l~~a~~~gl 248 (777)
+ ..-|++++.... .=+..|+.+|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 355666665433 457899999999886
No 217
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=83.12 E-value=2.4 Score=42.66 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCCChhhhhhC-----CCCeEEeeCchHHHHHHh-----hhccccccccccCCHH-----HHHHHHhcCCCCCCceEEEe
Q 004042 681 PINGIESLRKS-----DDPIGYQEGSFAEYYLSQ-----ELNISKSRLVALRTPE-----DYAKALKDGPGKGGVAAVVD 745 (777)
Q Consensus 681 ~i~s~~dl~~~-----~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~a~i~ 745 (777)
.|+|++||++. |+.+|+..|+....++.. ..+.. .+....... +...++++ |+.+++..
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~--d~~~v~~~~~~~~a~~~~A~~~----g~~~v~~~ 177 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLK--GFEVVESSEQGMLAQVARAEKS----GDPIVFLG 177 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCT--TCEEECCCHHHHHHHHHHHHHT----TCCCEEEE
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCC--CceeccCCHHHHHHHHHHHHHC----CCCEEEEE
Confidence 68899999732 677888888766543322 22331 222223222 33566777 99998888
Q ss_pred cchh
Q 004042 746 ERPY 749 (777)
Q Consensus 746 ~~~~ 749 (777)
-.+.
T Consensus 178 w~p~ 181 (298)
T 2rin_A 178 WEPH 181 (298)
T ss_dssp EESS
T ss_pred eccC
Confidence 7665
No 218
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=82.79 E-value=2 Score=44.90 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
..+.++++.+|.+|+.||+..........+.+.+.+++.|+++..-..+.++ .+.......++.+++.++|+||..+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4566677888999999998655443346788999999999887544444444 45788899999999999999998777
Q ss_pred h--hHHHHHHHHHH
Q 004042 233 P--SLGFQVFSVAK 244 (777)
Q Consensus 233 ~--~~~~~~l~~a~ 244 (777)
+ -|+..++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 6 35666666555
No 219
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=81.16 E-value=3.4 Score=41.98 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=52.5
Q ss_pred ccchhhHHHHHhhhhhccCcC--c--ccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcccc
Q 004042 620 KRQVITILWFSLSTLFFAHKE--N--TVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLY 679 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~--~--p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~~~ 679 (777)
..++..++||++.+++..|.+ . |.+..+|+++.+-.+.++++.+.-++-+.+.++.|+..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 357899999999999988744 3 46888999999999999999999999999999987754
No 220
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=80.92 E-value=2.4 Score=42.45 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=48.6
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
++.+++|++..+++..|. ..|.+..+|++.+++.++++.+.....+.+...+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999997764 489999999999999999999999999999988854
No 221
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=80.62 E-value=2.6 Score=42.20 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=44.4
Q ss_pred chhhHHHHHhhhhhccCcC--cccCchhH------HHHHHHHHHHHHHHhHhhHhHHHhhhh
Q 004042 622 QVITILWFSLSTLFFAHKE--NTVSTLGR------LVLIIWLFVVLIINSSYTASLTSILTV 675 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~p~~~~~R------~~~~~~~~~~lv~~~~Y~a~L~s~l~~ 675 (777)
++.+++|+++.++...|.. .|.+..+| ++..+|.++++.+.++-.+.+...+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988643 78777776 599999999999999888887776653
No 222
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=79.22 E-value=11 Score=35.93 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=45.6
Q ss_pred HHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcE
Q 004042 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (777)
Q Consensus 87 ~~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~ 166 (777)
+.+..|.+.|+.+|+-+-++.. ..+..+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 4455555569998887655554 44555556678888853 123333333336678
Q ss_pred EEEEEEeCccccchHHHHHHHHhhcceEE
Q 004042 167 VSVIFVDNEYGRNGVSALNDKLAERRCRI 195 (777)
Q Consensus 167 vaii~~~~~~g~~~~~~~~~~~~~~g~~v 195 (777)
|+++...... ....+++.+++.|+++
T Consensus 119 igvlaT~~T~---~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTI---VSGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHH---HHTHHHHHHHHTTCEE
T ss_pred EEEEecHHHh---hhhHHHHHHHHCCCeE
Confidence 8887543321 1123455566667664
No 223
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=78.22 E-value=4.9 Score=42.02 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.+.++++.++.+++.+|+..........+.+.+.+++.|+++..-..+.++ .+.+.....++.+++.++|+||..+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 355667777889999988544433346888999999999887543344444 457888899999999999999987665
Q ss_pred --hHHHHHHHHHH
Q 004042 234 --SLGFQVFSVAK 244 (777)
Q Consensus 234 --~~~~~~l~~a~ 244 (777)
-|+..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 46666666655
No 224
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=77.76 E-value=25 Score=33.00 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=45.9
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+...++..+.++.. ++++++.. +....+++.|.+|++|+++... ......+. +.++....+.+++++
T Consensus 43 ~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~ 110 (238)
T 2hxr_A 43 YFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA---PVHSPELE-AIPLLTESLALVVAQ 110 (238)
T ss_dssp TTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES---SCCCTTEE-EEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC---CCCcccce-eeeeccCcEEEEEcC
Confidence 445677888888774 33355544 3577889999999999988532 11122232 357777888888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 111 ~h 112 (238)
T 2hxr_A 111 HH 112 (238)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 225
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=76.44 E-value=24 Score=34.78 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=52.1
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEe
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 542 (777)
.++++|++... + ...+..+++..+.++. +.+ +++.. ++...++..|.+|++|+++.
T Consensus 94 ~g~l~i~~~~~--~------------~~~~l~~~l~~f~~~~P~i~--i~l~~-------~~~~~~~~~l~~g~~Dl~i~ 150 (306)
T 3fzv_A 94 AGQIDIGCFET--V------------APLYLPGLIAGFRQAYPGVE--IRIRD-------GEQQELVQGLTSGRFDLAFL 150 (306)
T ss_dssp CEEEEEEEEGG--G------------HHHHHHHHHHHHHHHCTTEE--EEEEE-------ECHHHHHHHHHHTSCSEEEE
T ss_pred CceEEEEechh--h------------hHHHHHHHHHHHHHHCCCeE--EEEEe-------CCHHHHHHHHHCCCccEEEE
Confidence 35688888641 1 1245567788888887 344 44444 35788999999999999875
Q ss_pred eEEEeecccceeeeccccc-ccceEEEEeccC
Q 004042 543 DITIVTNRTKIVDFSQPYA-ASGLVVVVPFRK 573 (777)
Q Consensus 543 ~~~~t~~r~~~~dfs~p~~-~~~~~~~v~~~~ 573 (777)
.- ......+. ..++. .....+++++..
T Consensus 151 ~~---~~~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 151 YE---HDLDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp CS---SSCCTTEE-EEESSCCBCCEEEEETTC
T ss_pred ec---cccccccc-eeeeeeccccEEEecCCC
Confidence 32 22222232 34555 667777776654
No 226
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=76.36 E-value=15 Score=35.77 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=45.0
Q ss_pred eHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccc-ceeeecccccccceEEEEec
Q 004042 494 CIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT-KIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 494 ~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~-~~~dfs~p~~~~~~~~~v~~ 571 (777)
-.+++..+.++. +.++ ++.. +....++..|.+|++|+++.......++. +.+. ..|+....+.+++++
T Consensus 42 l~~~l~~f~~~~P~i~v--~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~ 111 (290)
T 1twy_A 42 MDVLAEKYNQQHPETYV--AVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQ 111 (290)
T ss_dssp HHHHHHHHHHHCTTCEE--EEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECT
T ss_pred HHHHHHHHHhhCCCceE--EEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECC
Confidence 456778888887 5664 4433 45788999999999999885432221100 2222 356777888888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 112 ~~ 113 (290)
T 1twy_A 112 AN 113 (290)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 227
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=76.04 E-value=34 Score=32.37 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=94.7
Q ss_pred eEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc-CcEEEEcCCChhHH
Q 004042 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQCSTVA 109 (777)
Q Consensus 31 ~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aviGp~~s~~~ 109 (777)
-.+|.++.|.+. +..-++-++++.+ ...++.+.+. +-..++..+.+++.. ++.+||.-. +++
T Consensus 12 m~~ii~i~~~~~-----L~~~~~~i~~e~~--------~~~~I~vi~~--~le~av~~a~~~~~~~~~dVIISRG--gta 74 (225)
T 2pju_A 12 DKPVIWTVSVTR-----LFELFRDISLEFD--------HLANITPIQL--GFEKAVTYIRKKLANERCDAIIAAG--SNG 74 (225)
T ss_dssp -CCEEEEECCHH-----HHHHHHHHHTTTT--------TTCEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEH--HHH
T ss_pred CCCEEEEEchHH-----HHHHHHHHHHhhC--------CCceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCC--hHH
Confidence 347788888642 3333333333222 1234445443 345678888887775 699999522 233
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHh
Q 004042 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLA 189 (777)
Q Consensus 110 ~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~ 189 (777)
..+. +..++|+|... .+..+..+++...-+ ++ ++|++|...+.. ...+.+.+.+
T Consensus 75 ~~Lr---~~~~iPVV~I~------------------vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll- 128 (225)
T 2pju_A 75 AYLK---SRLSVPVILIK------------------PSGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF- 128 (225)
T ss_dssp HHHH---TTCSSCEEEEC------------------CCHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH-
T ss_pred HHHH---hhCCCCEEEec------------------CCHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh-
Confidence 3333 34579999741 334455566655433 33 589998754431 2344455544
Q ss_pred hcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHcCCC
Q 004042 190 ERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 190 ~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~gl~ 249 (777)
|+++... .+ .+..+....++++++.+.++||-.+. ..+.|++.|+.
T Consensus 129 --~~~i~~~-~~-----~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 129 --NLRLDQR-SY-----ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGMT 174 (225)
T ss_dssp --TCCEEEE-EE-----SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTSE
T ss_pred --CCceEEE-Ee-----CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCCc
Confidence 4455432 23 23789999999999999999876432 35677888874
No 228
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.76 E-value=7.8 Score=40.78 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCcEEEEEEEeCcccc-chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
.+.++++.+|.+++.+|+.+..... ...+.+.+.+++.|+++..-..+.++ .+.......++.+++.++|+||..+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3556677788899999985343333 36788889998889876533233333 45788888999999999999998766
Q ss_pred h--hHHHHHHHHH
Q 004042 233 P--SLGFQVFSVA 243 (777)
Q Consensus 233 ~--~~~~~~l~~a 243 (777)
+ -|+..++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5 4566666554
No 229
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=75.12 E-value=28 Score=31.74 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=45.4
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+-.+++..+.++.. .+++++.. ++...+..+|.+|++|+++... ......+. +.++....+.+++++
T Consensus 18 ~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~ 85 (209)
T 2ql3_A 18 TILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD---LDLSPEWQ-TVPLMTREPMVVLGA 85 (209)
T ss_dssp TTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES---SSCCTTEE-EEEEEEECCEEEEET
T ss_pred hhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec---CCCCCCce-EEEeecCceEEEEeC
Confidence 345678888888874 33355544 4578899999999999987532 11112222 356777778888775
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 86 ~h 87 (209)
T 2ql3_A 86 EH 87 (209)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 230
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=74.13 E-value=62 Score=30.99 Aligned_cols=171 Identities=13% Similarity=0.041 Sum_probs=86.5
Q ss_pred EEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCC-------ChHHHH----HHHHHHHhcCcEEE
Q 004042 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-------SGFIGM----VEALRFMETDIVAI 100 (777)
Q Consensus 32 i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~-------~~~~a~----~~a~~l~~~~v~av 100 (777)
.+|.++.|.++. .+-..+..+++.+.. +|.+|.....+.+- +...+. +.+.++..+|+.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~~-----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVAA-----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHCC-----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhcC-----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 478999998863 355566666665542 67788876665442 222222 22223334588877
Q ss_pred EcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccch
Q 004042 101 IGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180 (777)
Q Consensus 101 iGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~ 180 (777)
+=+-++... +..+-+..++|++.. .++.++.....+ ++|+||......
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~---- 121 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT---- 121 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----
T ss_pred EEeCCChhH--HHHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----
Confidence 764444333 234445668898863 122222211223 789988765432
Q ss_pred HHHHHHHHhhcceE--EEEeeecCCC--C--CC---ChhhHHHHHHHH-hcCCCeEEEEecCh-hHHHHHHHH
Q 004042 181 VSALNDKLAERRCR--ISYKSGIPPE--S--GV---NTGYVMDLLVKV-ALMESRVIVLHVSP-SLGFQVFSV 242 (777)
Q Consensus 181 ~~~~~~~~~~~g~~--v~~~~~~~~~--~--~~---~~~d~~~~l~~l-~~~~~~vIvl~~~~-~~~~~~l~~ 242 (777)
...+++.+++.|.. +......... . .. ....+.....++ ++.++|+||+.|.. ......+++
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~ 194 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTR 194 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHH
Confidence 24455555555532 2211111110 0 00 112233333333 34789999997765 444444544
No 231
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=73.88 E-value=13 Score=39.00 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=63.2
Q ss_pred CcEEEEEEEeCcccc--chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh------hH
Q 004042 164 WNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (777)
Q Consensus 164 w~~vaii~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~------~~ 235 (777)
-++|.|+|. ..||. ..++.+.+.+.+.|++++.....+.. .++.+.++..+. +++.|++.+.. +.
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 358999993 44554 56789999999999987654444433 567788888776 45677776554 45
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeCcch
Q 004042 236 GFQVFSVAKYLGMMGNGYVWIATDWLA 262 (777)
Q Consensus 236 ~~~~l~~a~~~gl~~~~~~~i~~~~~~ 262 (777)
...++.........++....+++-+|.
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCC
Confidence 667777777777665555566666665
No 232
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=73.58 E-value=34 Score=31.67 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=47.9
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+-..++..+.++.. ++++++.. ++...+++.|.+|++|+++... ......+.+ .|+....+.+++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~~ 88 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMFRK 88 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEEET
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEEcC
Confidence 455678888888873 33355544 4577899999999999988532 222223443 57888888988887
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
.-
T Consensus 89 ~h 90 (218)
T 2y7p_A 89 DH 90 (218)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 233
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=73.28 E-value=6.4 Score=38.67 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=49.1
Q ss_pred chhhHHHHHhhhhhccCc--CcccCchhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcc
Q 004042 622 QVITILWFSLSTLFFAHK--ENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (777)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~p~~~~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~ 677 (777)
++.+++|++..+++.-|. ..|.+..+|++.+++.++++.+...+.+.+...+....
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999998874 38999999999999999999999999999887776543
No 234
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=73.13 E-value=22 Score=35.17 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=44.4
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+..+++..+.++.. ++++++.. +....++..|.+|++|+++......+.....+. +.++....+.+++++
T Consensus 114 ~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l~-~~~l~~~~~~~v~~~ 184 (310)
T 2esn_A 114 ALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYDEEHERLPEGIQ-AHDWFADRYVVVARR 184 (310)
T ss_dssp HHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECCSTTCCCCTTEE-EEEEEEECEEEEEES
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecCcccccCCcCcc-eeeeeccceEEEEeC
Confidence 345677788887773 33355543 345578899999999998853100111112222 356777888888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 185 ~~ 186 (310)
T 2esn_A 185 DH 186 (310)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 235
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=73.11 E-value=53 Score=30.39 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=53.9
Q ss_pred CceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 464 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++|+||+... ....+..+++..+.++.. ++++++.. ++...+++.|.+|++|+++..
T Consensus 13 ~g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTHT--------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECHH--------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeeccc--------------hHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 35788887531 112455678888888874 34455544 457889999999999998752
Q ss_pred EEEeecccceeeecccccccceEEEEeccC
Q 004042 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 544 ~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
. .......+. ..++....+.+++++..
T Consensus 71 ~--~~~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 71 E--RLSNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp S--SSTTCTTEE-EEEEEEECEEEEEETTC
T ss_pred c--ccCCCCCce-EEEeeecceEEEecCCC
Confidence 1 111112232 35677778888887654
No 236
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=72.80 E-value=11 Score=38.94 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCcccc-chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEec
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 231 (777)
..+.++++.++ +++.+|+....+.. ...+.+.+.+++.|+++..-..+.++ .+.+.....++.+++.++|+||..+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33555667778 89999986544443 35788999998889876543334444 4578899999999999999999876
Q ss_pred Ch--hHHHHHHHHH
Q 004042 232 SP--SLGFQVFSVA 243 (777)
Q Consensus 232 ~~--~~~~~~l~~a 243 (777)
.+ -|+..++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 65 4566666554
No 237
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=72.65 E-value=5.2 Score=41.75 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.+.++++.+| +|+.||+....+.. ..+.+.+.+++ |+++.+ ..+..+ .+..+....++.+++.++|+||..+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3556778888 99999986555433 66778888888 988743 345544 457888888888888899999988777
Q ss_pred h--HHHHHHH
Q 004042 234 S--LGFQVFS 241 (777)
Q Consensus 234 ~--~~~~~l~ 241 (777)
. |+..++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4 4555554
No 238
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=72.05 E-value=5.3 Score=39.24 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 86 ~~~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
.+.+..|.+.|+.+|+-+-++... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 444556666799999986666544 5556666779999963
No 239
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=69.69 E-value=28 Score=26.84 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=47.6
Q ss_pred cCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHh
Q 004042 145 TQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (777)
Q Consensus 145 ~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~ 220 (777)
.-++...++..+.+++.+|..-..|||..| +...+.|....++.|.++... .+.+||...+.++.
T Consensus 57 vvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv--------tspddfkkslerli 121 (134)
T 2l69_A 57 VVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV--------TSPDDFKKSLERLI 121 (134)
T ss_dssp ECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHHH
T ss_pred EEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe--------cChHHHHHHHHHHH
Confidence 445677888888999999998888888555 346788888889999887532 12567776666653
No 240
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=69.35 E-value=12 Score=37.47 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 496 dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.+++.+-+.+|+++++... .+-.-+...|.+|++|+....
T Consensus 25 ~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e~ 64 (309)
T 1r9l_A 25 LLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAVN 64 (309)
T ss_dssp HHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEecc
Confidence 4556666778988765421 235667889999999998653
No 241
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=69.33 E-value=14 Score=37.86 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhc-C-ceeEEEeeEEEeeccc---ceeeecccccccceEEEE
Q 004042 496 DVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITT-G-VFDAVVGDITIVTNRT---KIVDFSQPYAASGLVVVV 569 (777)
Q Consensus 496 dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g-~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~~~v 569 (777)
++.+.+.++. |.++++.+ +.-..++.++.+ | .+|+.++.=.-..++. ...+-..+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~---------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEe---------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 5677777787 88866654 345678888853 4 7999765321111111 122334567778888888
Q ss_pred eccC
Q 004042 570 PFRK 573 (777)
Q Consensus 570 ~~~~ 573 (777)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8766
No 242
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=69.10 E-value=13 Score=37.03 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=59.3
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh-HHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~l~ 241 (777)
++|+++.. +++|.......+++.+++.|..+..... . .+.......++.+...++|.||+..... .....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 57888885 4678888999999999999998875432 2 2355666788888888999999876544 3456788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8887775
No 243
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=66.05 E-value=11 Score=37.35 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=58.2
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
++|+++.. +++|.....+.+++.+++.|..+.....-. .+.......++.+.+.++|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQ----YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSS----SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCc----CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 57888874 456777888999999999999887532221 235566677888888899999986544 33456788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888776
No 244
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=65.74 E-value=22 Score=34.68 Aligned_cols=38 Identities=11% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
.+..|.+.|+.+|+-+-++..+..+..+-+..++|+|.
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 34445556999888754444444566677778999997
No 245
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=65.50 E-value=17 Score=35.85 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=59.5
Q ss_pred hcCCcEEEEEEEe---CccccchHHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh-H
Q 004042 161 YYGWNAVSVIFVD---NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-L 235 (777)
Q Consensus 161 ~~~w~~vaii~~~---~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~ 235 (777)
.-+-.+|+++..+ +.|.......+++.+++. |..+......... .+.......++.+...+.|.||+..... .
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 82 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQY 82 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHH
Confidence 3345678888754 567778889999999988 7776654432211 2355667788888889999999876544 4
Q ss_pred HHHHHHHHHHcCC
Q 004042 236 GFQVFSVAKYLGM 248 (777)
Q Consensus 236 ~~~~l~~a~~~gl 248 (777)
....++.+.+.|+
T Consensus 83 ~~~~~~~~~~~~i 95 (304)
T 3gbv_A 83 TKGFTDALNELGI 95 (304)
T ss_dssp THHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
Confidence 5667788877775
No 246
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=65.43 E-value=45 Score=32.76 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=45.7
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+...++..+.++.. ++++++.. +....++..|.+|++|+++...... .....+ -+.|+....+.+++++
T Consensus 105 ~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~-~~~~~l-~~~~L~~~~~~~v~~~ 174 (305)
T 3fxq_A 105 AALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAAHKH-DIDTDL-EAQPLYVSDVVIVGQR 174 (305)
T ss_dssp THHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEECCGG-GSCTTE-EEEEEEECCEEEEEET
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecCCCC-CCccCe-eEEEeecCcEEEEEcC
Confidence 345677888887773 23355544 3467889999999999988532111 101222 2467778888888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 175 ~h 176 (305)
T 3fxq_A 175 QH 176 (305)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 247
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.27 E-value=19 Score=36.39 Aligned_cols=85 Identities=6% Similarity=-0.047 Sum_probs=57.4
Q ss_pred HHhcCCcEEEEEEEe----CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh
Q 004042 159 VSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (777)
Q Consensus 159 l~~~~w~~vaii~~~----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~ 234 (777)
++...-+.|+++..+ ++|.......+.+.+++.|..+..... . .+...-...++.+.+.+.|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 344455789999865 456677788999999999998765432 1 1244555678888888999999876554
Q ss_pred HHHHHHHHHHHcCC
Q 004042 235 LGFQVFSVAKYLGM 248 (777)
Q Consensus 235 ~~~~~l~~a~~~gl 248 (777)
....+.+.+++.++
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 44556666666664
No 248
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=64.90 E-value=33 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=45.6
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+..+++..+.++.. ++++++.. +....++..|.+|++|+++..... ....+. +.|+....+.+++++
T Consensus 104 ~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~~ 171 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRFFP---RHPGIE-IVNIAQEDLYLAVHR 171 (294)
T ss_dssp THHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESCCC---CCTTEE-EEEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEecCC---CCCCce-EEEEeeccEEEEEeC
Confidence 445677888888763 33355544 346788999999999999854321 122222 356777788888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 172 ~~ 173 (294)
T 1ixc_A 172 SQ 173 (294)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 249
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=64.85 E-value=56 Score=32.21 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=45.5
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+..+++..+.++.. ++++++.. ++...++..|.+|++|+++..... ....+ -+.++....+.+++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l-~~~~L~~~~~~~v~~~ 170 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKI---SDPAI-KHSLLRNERLMVAVHA 170 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCC---CCTTE-EEEEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCC---CCCCc-eEEEeecceEEEEEcC
Confidence 445677888887763 23355544 457889999999999999863221 11222 2356777788888776
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 171 ~h 172 (312)
T 2h9b_A 171 SH 172 (312)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 250
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=64.73 E-value=15 Score=37.61 Aligned_cols=109 Identities=7% Similarity=0.073 Sum_probs=68.9
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHH
Q 004042 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (777)
Q Consensus 139 ~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 218 (777)
|+-+...+... ..+.++++.++.+++.+|+....+. ...+.+.+.+++.|+++......+ + .+.+..... +.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~ 83 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AF 83 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HH
Confidence 44444444433 2355677888889999998655443 456888888988898765332232 2 246677777 77
Q ss_pred HhcCCCeEEEEecCh--hHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 004042 219 VALMESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATDW 260 (777)
Q Consensus 219 l~~~~~~vIvl~~~~--~~~~~~l~~a~~~gl~~~~~~~i~~~~ 260 (777)
+++.+.|+||..+.+ -|+..++... .++ .++-|-|..
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~vA~~--~~~---p~i~IPTT~ 122 (354)
T 3ce9_A 84 KIPAEVDALIGIGGGKAIDAVKYMAFL--RKL---PFISVPTST 122 (354)
T ss_dssp TSCTTCCEEEEEESHHHHHHHHHHHHH--HTC---CEEEEESCC
T ss_pred hhhcCCCEEEEECChHHHHHHHHHHhh--cCC---CEEEecCcc
Confidence 888899999987665 4566666533 233 445555443
No 251
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=63.79 E-value=76 Score=31.34 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=45.4
Q ss_pred eeeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEe
Q 004042 492 GFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVP 570 (777)
Q Consensus 492 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~ 570 (777)
.+...++..+.++. +.+ +++.. +....++..|.+|++|+++..... ....+ -..++....+.++++
T Consensus 103 ~~l~~~l~~f~~~~P~v~--l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l-~~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIH--IELIE-------CGTKDQINALKQGKIDLGFGRLKI---TDPAI-RRIMLHKEQLKLAIH 169 (313)
T ss_dssp TTHHHHHHHHHHHCTTSE--EEEEE-------CCHHHHHHHHHHTSCSEEEESSCC---CCTTE-EEEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCCCeE--EEEEe-------CChHHHHHHHHcCCCCEEEEeCCC---CCCCe-eEEEeeeCcEEEEEc
Confidence 44567888888877 445 45443 457889999999999999853221 11222 235677778888877
Q ss_pred ccC
Q 004042 571 FRK 573 (777)
Q Consensus 571 ~~~ 573 (777)
+..
T Consensus 170 ~~h 172 (313)
T 2h98_A 170 KHH 172 (313)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 252
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=63.61 E-value=54 Score=32.10 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 86 ~~~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
.+.+..|.++|+.+|+-+-++.++..+..+-+..++|+|.
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 3344455556999988754455445666666778899996
No 253
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=63.49 E-value=16 Score=37.30 Aligned_cols=81 Identities=5% Similarity=-0.000 Sum_probs=58.0
Q ss_pred CCcEEEEEEEe--C-ccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc--CCCeEEEEecChhHHH
Q 004042 163 GWNAVSVIFVD--N-EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGF 237 (777)
Q Consensus 163 ~w~~vaii~~~--~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~ 237 (777)
+-.+|+++..+ + +|.....+.+++.+++.|+.+.... .. .+.......++++.. .++|.||+........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~----~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AE----RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CT----TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CC----CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 34689999864 2 6778888999999999999887542 11 124445566777776 5899999976555667
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
.+++.+.+.|+
T Consensus 77 ~~~~~~~~~gi 87 (350)
T 3h75_A 77 QILRLSQGSGI 87 (350)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHhCCC
Confidence 78888887775
No 254
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=63.46 E-value=1.2e+02 Score=30.14 Aligned_cols=144 Identities=8% Similarity=-0.073 Sum_probs=88.1
Q ss_pred ChHHHHHHHHHHHhcCcEE-E-EcCCCh-hHHHHHHHhhccC-CceEEecccCCCCCCCCCCCceEEecCCchHHHHHHH
Q 004042 81 SGFIGMVEALRFMETDIVA-I-IGPQCS-TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA 156 (777)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~a-v-iGp~~s-~~~~~va~~~~~~-~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~ 156 (777)
.+..+...+.++++.|+.+ + +-+..+ .....+...++.. ++.+|.|.+..-.... ....-..|.
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~Gii~p~---~~~~~~~~~--------- 147 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPG---ECKIGIMPG--------- 147 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCEEEETT---TEEEESSCG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCeEeccc---ccceeeccc---------
Confidence 4566677777888887665 3 333322 2344788888998 9999976653321111 111112221
Q ss_pred HHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCC-ChhhHHHHHHHHhc-CCCeEEEEecCh-
Q 004042 157 EMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGV-NTGYVMDLLVKVAL-MESRVIVLHVSP- 233 (777)
Q Consensus 157 ~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~~~d~~~~l~~l~~-~~~~vIvl~~~~- 233 (777)
....--+|++|.+... ....+...+.+.|+-+.....+-.. . .+.++.+.|+.+.+ .++++|++++..
T Consensus 148 ---~~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 148 ---HIHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ---GGCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ---cCCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 1223357999986665 3445666677777666555444332 1 14677888887754 578999998875
Q ss_pred ----hHHHHHHHHHHH
Q 004042 234 ----SLGFQVFSVAKY 245 (777)
Q Consensus 234 ----~~~~~~l~~a~~ 245 (777)
.+++.|++++.+
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 468899988754
No 255
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=63.46 E-value=15 Score=37.99 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=58.7
Q ss_pred HHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-
Q 004042 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP- 233 (777)
Q Consensus 155 ~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 233 (777)
+.++++.++ +++.+|+....+. ...+.+.+.+++.|+++.. ..+... ...+.+...++.+++.++|+||..+.+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~~~~~~~d~IIavGGGs 97 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANIARKAEAAIVIGVGGGK 97 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 556677778 9999998554433 4678888899888988753 234333 345678888888888999999987665
Q ss_pred -hHHHHHHHH
Q 004042 234 -SLGFQVFSV 242 (777)
Q Consensus 234 -~~~~~~l~~ 242 (777)
-|+..++..
T Consensus 98 v~D~aK~iA~ 107 (370)
T 1jq5_A 98 TLDTAKAVAD 107 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456666653
No 256
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=63.28 E-value=26 Score=31.60 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=48.8
Q ss_pred CcEEEEEEEeCccccc---hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC-CCeEEEEecC
Q 004042 164 WNAVSVIFVDNEYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVS 232 (777)
Q Consensus 164 w~~vaii~~~~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 232 (777)
--+++||...|+-|+. ....+.+.+++.|+++.....++.+ ..++...+++..+. +.|+||..+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 3589999876665532 2457888899999998877777644 77888888887765 6899998754
No 257
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=63.08 E-value=12 Score=38.30 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.+.++++.+|.+|+.||+..... ...+.+.+.+++.++.+- . .+.++ .+.+.....++.+++.++|+||..+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v~-~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 97 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGVF-S-EAAMH--TPVEVTKTAVEAYRAAGADCVVSLGGG 97 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEEE-C-CCCTT--CBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEEe-c-CcCCC--CcHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 45677888899999999855443 356788888888765432 2 22223 346778888888899999999988776
Q ss_pred h--HHHHHHHH
Q 004042 234 S--LGFQVFSV 242 (777)
Q Consensus 234 ~--~~~~~l~~ 242 (777)
. |+..++..
T Consensus 98 s~iD~aK~iA~ 108 (353)
T 3hl0_A 98 STTGLGKAIAL 108 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 4 55555544
No 258
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=62.63 E-value=20 Score=33.15 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=54.2
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
++|+||+... ....+..+++..+.++.. ++++++.. +....+++.|.+|++|+++...
T Consensus 5 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5688887641 112456778888888874 34455544 4578999999999999987532
Q ss_pred EEeecccceeeecccccccceEEEEeccC
Q 004042 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 545 ~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
......+. +.|+....+.+++++..
T Consensus 63 ---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 ---VKESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp ---CGGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred ---CCCCCCcc-eeeeecccEEEEEcCCC
Confidence 22222232 25777788888887654
No 259
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=62.24 E-value=24 Score=34.54 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.4
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
.+..|.+.|+.+|+-+-++..+..+..+-+..++|+|.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 34445555999888754455444566666778999996
No 260
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=62.14 E-value=7.3 Score=38.66 Aligned_cols=58 Identities=3% Similarity=0.026 Sum_probs=43.3
Q ss_pred ccchhhHHHHHhhhhhccC-c-C--cccCc----hhHHHHHHHHHHHHHHHhHhhHhHHHhhhhcc
Q 004042 620 KRQVITILWFSLSTLFFAH-K-E--NTVST----LGRLVLIIWLFVVLIINSSYTASLTSILTVQQ 677 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~-~-~--~p~~~----~~R~~~~~~~~~~lv~~~~Y~a~L~s~l~~~~ 677 (777)
..++.+++|+.+.+++..| . + .|... +.+.+..+.++.++++.+.++|.+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999775 2 2 25333 34778888888999999999999999987544
No 261
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=62.12 E-value=22 Score=34.84 Aligned_cols=80 Identities=6% Similarity=0.037 Sum_probs=59.3
Q ss_pred CcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHH
Q 004042 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVF 240 (777)
Q Consensus 164 w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l 240 (777)
-++|+++.. ++.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+.... ......+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 357898885 4567778889999999999998875432 1 225556777888888899999987554 4566778
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+.+.+.|+
T Consensus 80 ~~~~~~~i 87 (291)
T 3l49_A 80 QKINDAGI 87 (291)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88888776
No 262
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=62.03 E-value=39 Score=32.25 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=50.2
Q ss_pred eeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccc---ceeeecccccccceEE
Q 004042 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (777)
Q Consensus 491 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~~ 567 (777)
.|+.-+|+..+.++.|.++++.+ +.-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 36667888888888887765554 34677899999999999875432221111 1111236788888999
Q ss_pred EEeccC
Q 004042 568 VVPFRK 573 (777)
Q Consensus 568 ~v~~~~ 573 (777)
++|+..
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 988766
No 263
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=60.33 E-value=1.2e+02 Score=29.83 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=45.4
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+...++..+.++.. ++++++.. +....++..|.+|++|+++.... ......+. +.++....+.+++++
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~--~~~~~~l~-~~~L~~~~~~~v~~~ 174 (324)
T 1al3_A 106 YALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATEA--LHLYDDLV-MLPCYHWNRSIVVTP 174 (324)
T ss_dssp HTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESSC--CCTTSCEE-EEEEEEECEEEEECT
T ss_pred hHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEecC--CCCCCCee-EEEecCCceEEEEcC
Confidence 345678888888874 44455544 35678999999999999885321 11112222 356667777777766
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 175 ~~ 176 (324)
T 1al3_A 175 EH 176 (324)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 264
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=59.90 E-value=19 Score=34.60 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
++...++-|.+ +++..+ ..+.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 33455566877 455555 4689999999999999964
No 265
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=59.63 E-value=46 Score=29.35 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=50.3
Q ss_pred cEEEEEEEe-CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChh-hHHHHHHHHhcCCCeEEEEecCh--hH--HHH
Q 004042 165 NAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTG-YVMDLLVKVALMESRVIVLHVSP--SL--GFQ 238 (777)
Q Consensus 165 ~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~l~~~~~~vIvl~~~~--~~--~~~ 238 (777)
+++.|+|.. .......++.+.+.+++.|+++... .+ . .. +....+.++. ..|.||+.++. .. ...
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~-~~--~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~ 75 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV-DL--G----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQG 75 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE-ES--S----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE-EC--c----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHH
Confidence 589999943 3344456788888888888875432 22 2 33 4555566665 46778876653 11 246
Q ss_pred HHHHHHHcCCCCCCeEEEEe
Q 004042 239 VFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 239 ~l~~a~~~gl~~~~~~~i~~ 258 (777)
++.......+.+.....+++
T Consensus 76 ~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 76 ALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHhhcccCCEEEEEEc
Confidence 77776665554433333433
No 266
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=59.52 E-value=27 Score=33.91 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHH
Q 004042 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (777)
Q Consensus 163 ~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l 240 (777)
.-++|+++..+ ++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 34678988854 567778889999999999998875432 1 1245566788888888999999987665 6677
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+.+.+.|+
T Consensus 79 ~~l~~~~i 86 (276)
T 3jy6_A 79 QEILHQQM 86 (276)
T ss_dssp HHHHTTSS
T ss_pred HHHHHCCC
Confidence 77877675
No 267
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=59.43 E-value=12 Score=38.47 Aligned_cols=96 Identities=20% Similarity=0.126 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
..+.++++.+|.+|+.+|+....++ ..+.+.+.+++.++.+ +. ...++ .+.+.....++.+++.++|+||..+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-YA-GAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-ec-CCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 3456778889999999998655433 4677888888775443 22 22222 34677888888888889999998877
Q ss_pred hh--HHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 233 PS--LGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 233 ~~--~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
+. |+..++... .++ .++-|-|.
T Consensus 99 GsviD~aK~iA~~--~~~---p~i~IPTT 122 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TGM---PIVAIPTT 122 (358)
T ss_dssp HHHHHHHHHHHHH--HCC---CEEEEECS
T ss_pred cHHHHHHHHHHhc--cCC---CEEEEeCC
Confidence 64 555555442 233 44555554
No 268
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=57.48 E-value=28 Score=34.34 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=57.9
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
.+|+++..+ ++|.....+.+++.+++.|..+..... . +.......++.+.+.++|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 368888753 567788889999999999998864432 1 25566778888888899999987654 44566788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 269
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=57.18 E-value=25 Score=34.45 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=58.1
Q ss_pred hcCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHH
Q 004042 161 YYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGF 237 (777)
Q Consensus 161 ~~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~ 237 (777)
.-.-++|+++.. +++|.....+.+++.+++.|..+.....- .+.......++.+.+.+.|.||+.... ....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ-----NSRISEREQILEFVHLKVDAIFITTLDDVYIG 79 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS-----SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC-----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 334468999885 35677788899999999999988754321 235556678888888899999986544 4445
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
..++++.+.|+
T Consensus 80 ~~~~~~~~~~i 90 (293)
T 3l6u_A 80 SAIEEAKKAGI 90 (293)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 67888887775
No 270
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=57.14 E-value=51 Score=28.21 Aligned_cols=85 Identities=5% Similarity=0.001 Sum_probs=54.2
Q ss_pred EEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh----hHHHHHHH
Q 004042 166 AVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVFS 241 (777)
Q Consensus 166 ~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~l~ 241 (777)
+|.+-....+.-.-...-+...++..|+++..-... ......++.+++.++++|.+++.. .....+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--------~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--------SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--------ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--------CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 555555444444455667788899999998855432 123345566666789999997754 33566778
Q ss_pred HHHHcCCCCCCeEEEEeC
Q 004042 242 VAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 242 ~a~~~gl~~~~~~~i~~~ 259 (777)
++++.|.. .-.+|++..
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 88887764 244566543
No 271
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=56.76 E-value=15 Score=36.82 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
++|+++.. +++|.....+.+++.+++.|+++.... +.. .+...-..+++.+...+.|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57888874 456777778889999999998876421 111 234555667888888899998886543 33456788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++++.|+
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8887775
No 272
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.80 E-value=37 Score=33.21 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=58.4
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh----HHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQ 238 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~----~~~~ 238 (777)
++|+++.. +++|.....+.+++.+++.|..+.....- .+...-...++.+...+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 78999985 35677888999999999999988754322 1245566788888888999999875432 3446
Q ss_pred HHHHHHHcCC
Q 004042 239 VFSVAKYLGM 248 (777)
Q Consensus 239 ~l~~a~~~gl 248 (777)
.++++.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7777877775
No 273
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.54 E-value=76 Score=28.04 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=57.6
Q ss_pred CcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh----hHHHHH
Q 004042 164 WNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQV 239 (777)
Q Consensus 164 w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~ 239 (777)
-.+|.+.....+.-.-+..-+...++..|++|..-.. .......+..+++.++++|.+.+.. ..+..+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~ 89 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRL 89 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHH
Confidence 3466665555555555677788889999999874321 2234456777777899999997753 467778
Q ss_pred HHHHHHcCCCCCCeEEEEe
Q 004042 240 FSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~ 258 (777)
++++++.|.. .-.+|++.
T Consensus 90 i~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 90 MAKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHHTTCT-TSCEEEEE
T ss_pred HHHHHhcCCC-CCEEEEeC
Confidence 8888887762 23466654
No 274
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=54.77 E-value=17 Score=35.28 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=56.6
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHH
Q 004042 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~ 242 (777)
+.|+++..+ ++|.....+.+++.+++.|..+..... . .+...-...++.+.+.+.|.||+..........+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 578888854 567778889999999999998875432 1 225556677888888899999987654223456677
Q ss_pred HHHcCC
Q 004042 243 AKYLGM 248 (777)
Q Consensus 243 a~~~gl 248 (777)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777675
No 275
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=54.75 E-value=29 Score=34.20 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=54.7
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
.+|+++.. +++|.....+.+++.+++.|+++.... +.. .+.......++.+...+.|.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46888864 456777888899999999998875321 111 224555667888877889998886544 33445677
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.++
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 276
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=54.55 E-value=48 Score=32.29 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
.+..|.+.|+.+|+-+-++.++.++..+-+..++|+|.
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 34455566999988755555554566777788999996
No 277
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=54.53 E-value=37 Score=33.47 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=44.0
Q ss_pred HHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhc-Cc-eeEEEeeEEEee---cccceeeecccccccceEEE
Q 004042 495 IDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVVV 568 (777)
Q Consensus 495 ~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~---~r~~~~dfs~p~~~~~~~~~ 568 (777)
-++++.+.++. |.++++.+ +....++..+.+ |. +|+.+..-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 35677777774 88866644 346678888988 75 999765311101 11222344567777888888
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87765
No 278
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=53.52 E-value=6.9 Score=37.54 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=51.9
Q ss_pred eeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccc---ceeeecccccccceEE
Q 004042 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (777)
Q Consensus 491 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~~ 567 (777)
.|+.-+|+..+.++.|.++++.+ +.-..++.++.+|.+|+++..-....+.. ....-..|+....+.+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46677888888888888865555 45778899999999999875433222111 1112245788899999
Q ss_pred EEeccCC
Q 004042 568 VVPFRKL 574 (777)
Q Consensus 568 ~v~~~~~ 574 (777)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9988763
No 279
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=53.50 E-value=20 Score=35.58 Aligned_cols=26 Identities=4% Similarity=0.031 Sum_probs=21.1
Q ss_pred CCCCChhhh-hhCCCCeEEeeCchHHHHH
Q 004042 680 SPINGIESL-RKSDDPIGYQEGSFAEYYL 707 (777)
Q Consensus 680 ~~i~s~~dl-~~~~~~i~~~~~~~~~~~~ 707 (777)
..|+|++|| . |++|++..+++.+.++
T Consensus 126 ~~iksl~DL~~--Gk~IAip~~~s~~~~~ 152 (295)
T 1p99_A 126 DKIKDVKKVKD--GAKVVIPNDVSNQARA 152 (295)
T ss_dssp SSCSCGGGCCT--TCEEEEECSHHHHHHH
T ss_pred CCCCChHHcCC--CCEEEecCCCcHHHHH
Confidence 489999999 7 9999999987655443
No 280
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=52.91 E-value=36 Score=34.49 Aligned_cols=83 Identities=5% Similarity=-0.117 Sum_probs=50.4
Q ss_pred cCCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHH
Q 004042 162 YGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (777)
Q Consensus 162 ~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~ 239 (777)
-.-..|+++..+ +.|.......+++.+++.|..+.....- . .........++.+...+.|.||+.........+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~--~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~ 134 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVE--R--SGVEACKTAVHNLLAQRVSGLIINYPLDDQDAI 134 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECC--S--SSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHH
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCC--C--CcHHHHHHHHHHHHHCCCCEEEEecCCCChhHH
Confidence 344678988854 4566777888999999999987653221 1 112444567888888889988886432222223
Q ss_pred HHHHHHcCC
Q 004042 240 FSVAKYLGM 248 (777)
Q Consensus 240 l~~a~~~gl 248 (777)
...+...++
T Consensus 135 ~~~~~~~~i 143 (349)
T 1jye_A 135 AVEAACTNV 143 (349)
T ss_dssp HHHHHTTTS
T ss_pred HHHHhhCCC
Confidence 334444443
No 281
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=52.83 E-value=32 Score=34.44 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=58.3
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
++|+++..+ ++|.......+++.+++.|..+..... . .+...-...++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---D--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---C--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888854 577888889999999999998765432 1 234555667788877889999987654 34567788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 282
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=52.71 E-value=72 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=25.7
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
.+..|.+.|+.+|+-+-++..+..+..+-+..++|+|..
T Consensus 76 ~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 76 IARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 344455558998887544554445666667789999973
No 283
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.41 E-value=28 Score=34.07 Aligned_cols=83 Identities=7% Similarity=-0.005 Sum_probs=56.1
Q ss_pred HhcCCcEEEEEEEe-------CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 160 SYYGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 160 ~~~~w~~vaii~~~-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
+.-+-++|+++..+ ++|.....+.+++.+++.|..+... ... .........++.+.+.+.|.||+...
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 4 ANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp ---CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred ccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 33455689998765 5577788889999999999887642 222 22344566788888889999998654
Q ss_pred hhHHHHHHHHHHHcCC
Q 004042 233 PSLGFQVFSVAKYLGM 248 (777)
Q Consensus 233 ~~~~~~~l~~a~~~gl 248 (777)
... ...++.+.+.|+
T Consensus 79 ~~~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 79 REN-DRIIQYLHEQNF 93 (292)
T ss_dssp BTT-CHHHHHHHHTTC
T ss_pred CCC-hHHHHHHHHCCC
Confidence 432 246777777775
No 284
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=52.34 E-value=67 Score=31.71 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=43.5
Q ss_pred eeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEecc
Q 004042 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFR 572 (777)
Q Consensus 493 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~ 572 (777)
+...++..+.++.. .+++++.. +....++..|.+|++|+++... +.....+. +.|+....+.+++++.
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~~ 186 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL---PELQTGFF-QRRLFRHRYVCMFRKD 186 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECC---TTCCTTEE-EEEEEEECEEEEEETT
T ss_pred HHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecC---CCCCCCce-EEEeeccceEEEEeCC
Confidence 44667788887763 33355543 3466789999999999988532 11112222 3567777778777655
Q ss_pred C
Q 004042 573 K 573 (777)
Q Consensus 573 ~ 573 (777)
.
T Consensus 187 h 187 (315)
T 1uth_A 187 H 187 (315)
T ss_dssp C
T ss_pred C
Confidence 4
No 285
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=52.01 E-value=22 Score=35.15 Aligned_cols=81 Identities=7% Similarity=0.003 Sum_probs=57.7
Q ss_pred cEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
.+|+++..+ ++|.....+.+++.+++.|+.+.....-.. .+...-...++.+...+.|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA---NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc---CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 468888753 678888889999999999998875432110 125556678888888899999886543 44466778
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8887776
No 286
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=51.86 E-value=64 Score=31.04 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHH-HHHhcCC
Q 004042 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE-MVSYYGW 164 (777)
Q Consensus 86 ~~~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~-~l~~~~w 164 (777)
.+.+..|.+.|+.+|+-+-++..+..+..+-+..++|++.. .++.++ .++..+-
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi-------------------------~e~~~~~A~~~~~~ 106 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGV-------------------------IEPGVKEALKKSRN 106 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEES-------------------------HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------eHHHHHHHHHccCC
Confidence 33444555669998887444444334556666678999963 122222 2334567
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCC-----C----hhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGV-----N----TGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-----~----~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
++|+++......-.. ..++.+++.|+++.....-..-... + ...+...++++.+. +|+||+.|..
T Consensus 107 ~rigVlaT~~T~~~~---~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 107 KKIGVIGTPATVKSG---AYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp CEEEEEECHHHHHHC---HHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred CEEEEEEChHHhhhH---HHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 899999755432211 2345555678776522111010000 1 12334444455555 9999998766
No 287
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=51.74 E-value=37 Score=33.10 Aligned_cols=79 Identities=8% Similarity=0.046 Sum_probs=54.8
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
++|+++.. +++|.....+.+++.+++.|.++..... . .+.......++.+...+.|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 47888875 3667778889999999999998764322 1 124455667788877889999886543 33345677
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.++
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 288
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=51.28 E-value=73 Score=29.62 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=45.9
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+..+++..+.++.. ++++++.. +....++..|.+|++|+++..... ..+ -+.++....+.+++++
T Consensus 40 ~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~~~-----~~~-~~~~l~~~~~~~v~~~ 105 (238)
T 3onm_A 40 TLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTAKV-----DSH-PHVILRTSPTLWYCSV 105 (238)
T ss_dssp THHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEET
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEecCC-----CCc-ceEEeecCCEEEEEcC
Confidence 455678888888763 23355444 468889999999999999853321 112 3467777888888876
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 106 ~~ 107 (238)
T 3onm_A 106 DY 107 (238)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 289
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=51.21 E-value=40 Score=30.73 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=47.5
Q ss_pred CCcEEEEEEEeCcc--c--cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 163 GWNAVSVIFVDNEY--G--RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 163 ~w~~vaii~~~~~~--g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
.--+|+||...|+- | ......+...+++.|.++.....++.+ ...+...+++..+.+.|+||..+.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 34578888764431 2 234567888899999999887777644 778888888876567899998654
No 290
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=50.77 E-value=51 Score=29.81 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=48.1
Q ss_pred cCCcEEEEEEEeCc-c------c---cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC-CCeEEEEe
Q 004042 162 YGWNAVSVIFVDNE-Y------G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLH 230 (777)
Q Consensus 162 ~~w~~vaii~~~~~-~------g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~ 230 (777)
+.--+|+||...|. + | ......+.+.+++.|.++.....++.+ ...+...+++..+. +.|+||..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 45568999886542 1 2 233456888899999998877777644 77888888887654 58999987
Q ss_pred cC
Q 004042 231 VS 232 (777)
Q Consensus 231 ~~ 232 (777)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 291
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=50.75 E-value=61 Score=31.85 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHh-cCcEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 89 ALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 89 a~~l~~-~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
+..+++ .|+.+|+-+-++..+..+..+-+..++|+|..
T Consensus 76 ~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 76 VTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 334445 48988887544444446666767789999974
No 292
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=50.53 E-value=41 Score=33.83 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHhcCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHH
Q 004042 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (777)
Q Consensus 159 l~~~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 236 (777)
++...-+.|+++.. +++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+.......
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 33344567999885 3567788899999999999998764322 1 224556677888888899999987644322
Q ss_pred HHHHHHHHHcCC
Q 004042 237 FQVFSVAKYLGM 248 (777)
Q Consensus 237 ~~~l~~a~~~gl 248 (777)
..++.+.+.++
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45666666665
No 293
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=50.20 E-value=44 Score=32.67 Aligned_cols=82 Identities=7% Similarity=0.023 Sum_probs=52.8
Q ss_pred HHhcCCcEEEEEEE-eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHH
Q 004042 159 VSYYGWNAVSVIFV-DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (777)
Q Consensus 159 l~~~~w~~vaii~~-~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~ 237 (777)
|+.-+-+.|+++.. +++|.....+.+++.+++.|..+.....-.. .. -...++.+.+.+.|.||+.......
T Consensus 7 L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-----~~-~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (289)
T 3k9c_A 7 LRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPS-----RA-EKVAVQALMRERCEAAILLGTRFDT- 79 (289)
T ss_dssp ------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTT-----BC-HHHHHHHHTTTTEEEEEEETCCCCH-
T ss_pred hhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCC-----HH-HHHHHHHHHhCCCCEEEEECCCCCH-
Confidence 44445568888872 2456777788999999999998775443321 22 5667888888899999997654433
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
..++.+.+ ++
T Consensus 80 ~~~~~~~~-~i 89 (289)
T 3k9c_A 80 DELGALAD-RV 89 (289)
T ss_dssp HHHHHHHT-TS
T ss_pred HHHHHHHc-CC
Confidence 45566654 54
No 294
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=50.06 E-value=23 Score=34.95 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEec
Q 004042 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDE 746 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~ 746 (777)
.+++++||. +++|++.--..+.+||. +.+.+ .+++..+..-|..-.+ |-.|++++-
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDi 175 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADV 175 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEE
Confidence 556899997 89999988888899994 44544 3454445444544444 666676664
No 295
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=49.94 E-value=16 Score=36.79 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.+|++++||+ |+||.+..+......++ ..+..+ + .-...|.+.+|++ |.+|+.....+.+
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~~-~lGa~p---v-~m~~~Evy~ALq~----G~VDg~~~~~~~~ 189 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETYK-AFGATP---T-PLPWGEVYGGLQT----GIIDGQENPIFWI 189 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCEE---E-ECCGGGHHHHHHH----TSCSEEEEEHHHH
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHHH-HcCCee---e-ecCHHHHHHHHHc----CCcceeeCCHHHH
Confidence 5899999999 99999876665666773 455432 1 2367799999999 9999998765543
No 296
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=49.87 E-value=30 Score=34.16 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-CCCeecEEEEecCCCCCCCChhHHHHHHhc-Cc-eeEEEeeEEEeec---ccceeeecccccccceEEE
Q 004042 495 IDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVTN---RTKIVDFSQPYAASGLVVV 568 (777)
Q Consensus 495 ~dl~~~l~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~~---r~~~~dfs~p~~~~~~~~~ 568 (777)
-++++.+.++ -|.++++.+ +....++..+.+ |. +|+.++.=....+ ....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi~ 90 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVLA 90 (292)
T ss_dssp HHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEEE
Confidence 3667777777 487765544 456778889988 65 9997653111011 1122344567777788888
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 91 ~~~~~ 95 (292)
T 3cfz_A 91 YTDKS 95 (292)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 87654
No 297
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=49.68 E-value=66 Score=31.70 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 86 ~~~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
.+.+..|.++|+.+|+-+-++..+..+..+-+..++|+|.
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 76 WEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 3344455566999888755555545566777778999996
No 298
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=49.67 E-value=51 Score=32.09 Aligned_cols=84 Identities=5% Similarity=-0.092 Sum_probs=52.9
Q ss_pred HHhcCCcEEEEEEEe----CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh
Q 004042 159 VSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (777)
Q Consensus 159 l~~~~w~~vaii~~~----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~ 234 (777)
|+.-.-.+|+++..+ ++|.....+.+++.+++.|.++.... .. .+.......++.+...+.|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 344445689998754 45777888899999999999876432 11 2244556678888878899998875532
Q ss_pred HHHHHHHHHHH-cCC
Q 004042 235 LGFQVFSVAKY-LGM 248 (777)
Q Consensus 235 ~~~~~l~~a~~-~gl 248 (777)
.. ..++.+.+ .++
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34566666 565
No 299
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=49.59 E-value=1.1e+02 Score=29.59 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHHHh-cCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 85 GMVEALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 85 a~~~a~~l~~-~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
..+.+..|.+ .|+.+|+-+-++.++..+..+-+..++|+|.
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVig 95 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEc
Confidence 3445566667 7999888754455444566666778999996
No 300
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=49.33 E-value=33 Score=33.92 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=54.7
Q ss_pred HHHHhcCCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh
Q 004042 157 EMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (777)
Q Consensus 157 ~~l~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~ 234 (777)
+-|+..+-+.|+++..+ ++|.....+.+++.+++.|..+.....- .+...-...++.+.+.+.|.||+.....
T Consensus 8 r~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 8 RALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ---------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred HHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 33444455679988853 5677888899999999999987654322 1245566788888889999999976543
Q ss_pred HHHHHHHHHHHcCC
Q 004042 235 LGFQVFSVAKYLGM 248 (777)
Q Consensus 235 ~~~~~l~~a~~~gl 248 (777)
.....++.+.+ ++
T Consensus 83 ~~~~~~~~l~~-~i 95 (303)
T 3kke_A 83 FDDDMLAAVLE-GV 95 (303)
T ss_dssp CCHHHHHHHHT-TS
T ss_pred CcHHHHHHHhC-CC
Confidence 32225666666 65
No 301
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=49.05 E-value=58 Score=29.06 Aligned_cols=68 Identities=6% Similarity=0.033 Sum_probs=48.8
Q ss_pred cCCcEEEEEEEeCcccc---chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecCh
Q 004042 162 YGWNAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (777)
Q Consensus 162 ~~w~~vaii~~~~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~ 233 (777)
+.--+++||...|+-|+ .....+.+.+++.|.++.....++.+ ...+...+++..+ .+.|+||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34468999987665442 23456788888999998877777644 7788888888775 378999986543
No 302
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.99 E-value=27 Score=33.74 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=56.1
Q ss_pred EEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC-CeEEEEecC-hhHHHHHHH
Q 004042 166 AVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS-PSLGFQVFS 241 (777)
Q Consensus 166 ~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~-~~~~~~~l~ 241 (777)
+|+++.. +++|.....+.+++.+++.|.++.....-. . .+.......++.+.+.+ .|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-D--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-C--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5777774 456778888999999999999877532111 1 22445556778887778 999998764 344566788
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.|+
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887775
No 303
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=48.97 E-value=52 Score=29.25 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=46.1
Q ss_pred EEEEEEEeCc--cc---cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcC-CCeEEEEecCh
Q 004042 166 AVSVIFVDNE--YG---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVSP 233 (777)
Q Consensus 166 ~vaii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~~ 233 (777)
+++||...|+ .| ......+.+.+++.|.++.....++.+ ...+...+++..+. +.|+||..+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 6777775443 11 233467888999999998877777644 77888888887764 68999986543
No 304
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=48.69 E-value=35 Score=35.37 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=62.3
Q ss_pred HHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCC-CCChhhHHHHHHHHhcCCC---eEEEEecCh
Q 004042 158 MVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-GVNTGYVMDLLVKVALMES---RVIVLHVSP 233 (777)
Q Consensus 158 ~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~d~~~~l~~l~~~~~---~vIvl~~~~ 233 (777)
+++.++.+++.||+....+.. ..+.+.+.+++.|+++... .++... ..+...+...++.+++.+. ++||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 445557789999986665443 6788888999889876432 222221 1246778888888887766 688877666
Q ss_pred --hHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 234 --SLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 234 --~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
-|+..++......|+ .++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rgi---p~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRGV---DFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTCC---EEEEEECS
T ss_pred HHhhHHHHHHHHhcCCC---CEEEeCCC
Confidence 456666655554453 45555554
No 305
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=48.52 E-value=13 Score=35.48 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHHhcCCcEE
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAV 167 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v 167 (777)
.+..|.+.|+.+|+-+-++... ....+-+..++|++.. .++.++.+...+-++|
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rV 121 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKI 121 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEE
Confidence 3444545599988876555433 2344445567888852 2444444444567899
Q ss_pred EEEEEeCccccchHHHHHHHHhhc-ceEEE
Q 004042 168 SVIFVDNEYGRNGVSALNDKLAER-RCRIS 196 (777)
Q Consensus 168 aii~~~~~~g~~~~~~~~~~~~~~-g~~v~ 196 (777)
+++......-.. .+++.+++. |+++.
T Consensus 122 gvLaT~~T~~s~---~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 122 GLLGTRYTMEQG---FYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEESCHHHHHST---TTHHHHHHTTCCEEE
T ss_pred EEEcCHHHhhch---HHHHHHHhcCCCEEE
Confidence 988654321111 123444555 77764
No 306
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=48.04 E-value=41 Score=33.81 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=53.1
Q ss_pred cEEEEEEEe---CccccchHHHHHHHHhhcceEEEEee-ecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHH
Q 004042 165 NAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKS-GIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (777)
Q Consensus 165 ~~vaii~~~---~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l 240 (777)
.+|+++..+ ++|.......+++.+++.|..+.... ..... .+...-...++.+...+.|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 468888754 56777788899999999998765432 11100 1234455677888778899999854433334556
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+.+.+.+.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 66766664
No 307
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.93 E-value=49 Score=33.54 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=55.5
Q ss_pred HHhcCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHH
Q 004042 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (777)
Q Consensus 159 l~~~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 236 (777)
++...-+.|+++.. ++.|.......+++.+++.|..+..... . .+...-...++.+...+.|.||+.......
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 139 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHTE 139 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCCH
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 33334467999885 3557777888999999999998865422 1 124555677888888899999987654332
Q ss_pred HHHHHHHHHcCC
Q 004042 237 FQVFSVAKYLGM 248 (777)
Q Consensus 237 ~~~l~~a~~~gl 248 (777)
..++.+.+.++
T Consensus 140 -~~~~~l~~~~i 150 (355)
T 3e3m_A 140 -QTIRLLQRASI 150 (355)
T ss_dssp -HHHHHHHHCCS
T ss_pred -HHHHHHHhCCC
Confidence 45677777775
No 308
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=47.87 E-value=28 Score=34.46 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=56.2
Q ss_pred HHHHhcCCcEEEEEEEe-------CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 004042 157 EMVSYYGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (777)
Q Consensus 157 ~~l~~~~w~~vaii~~~-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl 229 (777)
+-++...-+.|+++..+ ++|.....+.+++.+++.|..+... ... .+.......++.+.+.+.|.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEE
Confidence 33445556789999865 4577778889999999999987642 211 12344566788888889999998
Q ss_pred ecChhHHHHHHHHHHHcCC
Q 004042 230 HVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 230 ~~~~~~~~~~l~~a~~~gl 248 (777)
....... ..++.+.+.|+
T Consensus 90 ~~~~~~~-~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKDD-PIEHLLNEFKV 107 (305)
T ss_dssp SSCBTTC-HHHHHHHHTTC
T ss_pred eCCcCCc-HHHHHHHHcCC
Confidence 7544322 46677777675
No 309
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=47.65 E-value=1.3e+02 Score=29.37 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=25.4
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 89 a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
+..|.+.|+.+|+-+-++..+.++..+-+..++|+|.
T Consensus 79 ~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 79 LDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp HHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 3344445999988755555555566777778999996
No 310
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=47.32 E-value=49 Score=32.27 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=54.1
Q ss_pred CcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHH
Q 004042 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (777)
Q Consensus 164 w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~ 241 (777)
-+.|+++..+ ++|.......+++.+++.|..+.... . . .+.......++.+...+.|.||+...... ...++
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 89 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN-S--D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVA 89 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-C--T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-C--C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHH
Confidence 3578988854 56777888899999999999876432 1 1 12445566788888889999988654322 23556
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.++
T Consensus 90 ~l~~~~i 96 (289)
T 2fep_A 90 EFKRSPV 96 (289)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 6666665
No 311
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=47.22 E-value=49 Score=32.51 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=54.6
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcce-EEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh-HHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVF 240 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~l 240 (777)
++|+++.. +++|.......+++.+++.|. .+..... . .+.......++.+...++|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46888875 356777888899999999996 7654321 1 1244556677888888899998865443 345677
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+++.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777665
No 312
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=46.88 E-value=1.2e+02 Score=29.54 Aligned_cols=87 Identities=16% Similarity=0.033 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
..++......|...+.++. +..|.....+.++..-+.-++.|.....+- +.+ ++.+.+..++|.|++...
T Consensus 82 ~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~-------d~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF-------DPY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC-------STH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC-------CHH--HHHHHHHcCCCEEEEccc
Confidence 4566667788999999887 444555566677665555677776443331 112 577788899999999764
Q ss_pred ---hhHHHHHHHHHHHcCCC
Q 004042 233 ---PSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 233 ---~~~~~~~l~~a~~~gl~ 249 (777)
..+...+++.++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 35788899999999974
No 313
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.47 E-value=45 Score=30.97 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeC--ccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 004042 152 MTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (777)
Q Consensus 152 ~~a~~~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl 229 (777)
...+.+++..+.-++|++|-... +...+..+.+++.+++.|.++....... .+..+..+. ++ ++|.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~---l~--~ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTK---LR--KNDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHH---HH--HSSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHH---HH--hCCEEEE
Confidence 44455566566668999985211 1123467889999999999865432111 123444443 43 2677888
Q ss_pred ecChhHHHHHHHHHHHcCCCC-------CCeEEEEeC
Q 004042 230 HVSPSLGFQVFSVAKYLGMMG-------NGYVWIATD 259 (777)
Q Consensus 230 ~~~~~~~~~~l~~a~~~gl~~-------~~~~~i~~~ 259 (777)
.+ ++ ...+++.+++.|+.. .+..+++++
T Consensus 86 ~G-G~-~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 86 TG-GN-TFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp CC-SC-HHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred CC-CC-HHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 66 32 234555555555422 234566665
No 314
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=46.37 E-value=38 Score=33.25 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=53.9
Q ss_pred CCcEEEEEEE------eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHH
Q 004042 163 GWNAVSVIFV------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (777)
Q Consensus 163 ~w~~vaii~~------~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 236 (777)
.-+.|+++.. +++|.....+.+++.+++.|..+.....-. .......++.+...+.|.||+.......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 4467898886 355777788899999999998877554322 2233456667777789999987654322
Q ss_pred HHHHHHHHHcCC
Q 004042 237 FQVFSVAKYLGM 248 (777)
Q Consensus 237 ~~~l~~a~~~gl 248 (777)
..++.+.+.|+
T Consensus 79 -~~~~~l~~~~i 89 (294)
T 3qk7_A 79 -FRLQYLQKQNF 89 (294)
T ss_dssp -HHHHHHHHTTC
T ss_pred -HHHHHHHhCCC
Confidence 46667777665
No 315
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=46.35 E-value=2.6e+02 Score=29.62 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHhcCcEEEEcC--CChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHH
Q 004042 81 SGFIGMVEALRFMETDIVAIIGP--QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (777)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~aviGp--~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~ 158 (777)
.+..+...+.++.+.|+.+||=. ..-.....+..++..+++.+|.|.+ . ...- +. +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc-G-~~~~---~~-~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC-G-TSMI---AG-TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC-C-EEEE---TT-EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc-c-cccc---CC-ccccccC----------
Confidence 44556667777777766644421 1123345667788888888888777 1 1111 11 1111111
Q ss_pred HHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCC---CChhhHHHHHHHHhc-CCCeEEEEecCh-
Q 004042 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESG---VNTGYVMDLLVKVAL-MESRVIVLHVSP- 233 (777)
Q Consensus 159 l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~---~~~~d~~~~l~~l~~-~~~~vIvl~~~~- 233 (777)
.+.--+|++|.+... ....+...+.+.|+-+.....+-.... ..+.++.+.+..+.+ .++++|+++..+
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 022348999986654 445566677777776665544432200 146778888988876 478999998853
Q ss_pred --hHHHHHHHHHHHcC
Q 004042 234 --SLGFQVFSVAKYLG 247 (777)
Q Consensus 234 --~~~~~~l~~a~~~g 247 (777)
...+.|++++++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 23478998887643
No 316
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=45.69 E-value=8.3 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.4
Q ss_pred ccchhhHHHHHhhhhhcc
Q 004042 620 KRQVITILWFSLSTLFFA 637 (777)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~ 637 (777)
..++..++||+||.++..
T Consensus 6 ~~~l~aa~wF~WGvllns 23 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheec
Confidence 456788999999998754
No 317
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=45.56 E-value=34 Score=36.35 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 154 AVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 154 a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.+.++++.+|.+++.||+....+. ...+.+.+.+++.|+++.. ..+... ...+.+....+.+++ ++|+||..+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 355667777866999998655433 4678888889888988743 223333 335677777777777 99999987665
Q ss_pred --hHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 234 --SLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 234 --~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
-|+..++... .++ .++-|-|.
T Consensus 156 SviD~AK~iA~~--~gi---P~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAHS--MNL---PSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHHH--TTC---CEEEEESS
T ss_pred HHHHHHHHHHHh--cCC---CEEEEeCC
Confidence 4556565532 243 45555544
No 318
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=45.46 E-value=41 Score=33.31 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=52.8
Q ss_pred EEEEEEEeCc-cccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHHHH
Q 004042 166 AVSVIFVDNE-YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFSVA 243 (777)
Q Consensus 166 ~vaii~~~~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~~a 243 (777)
+|+++..+.. |.....+.+++.+++.|.++.....- . .+.......++.+...+.|.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQ--K--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCS--S--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCC--C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 6777764321 67777888899999999887643211 1 224555667888877889999886543 3344567777
Q ss_pred HHcCC
Q 004042 244 KYLGM 248 (777)
Q Consensus 244 ~~~gl 248 (777)
.+.|+
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77675
No 319
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=45.28 E-value=26 Score=34.41 Aligned_cols=85 Identities=7% Similarity=0.007 Sum_probs=54.6
Q ss_pred HHhcCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHH
Q 004042 159 VSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (777)
Q Consensus 159 l~~~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 236 (777)
|+.-.-.+|+++.. .++|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E----DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 44445568999885 3567777888999999999998764321 1 124455667888888889999886544322
Q ss_pred HHHHHHHHHcCC
Q 004042 237 FQVFSVAKYLGM 248 (777)
Q Consensus 237 ~~~l~~a~~~gl 248 (777)
..+++.+.+.++
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 234555555454
No 320
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.02 E-value=39 Score=34.22 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=52.8
Q ss_pred CcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHH
Q 004042 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (777)
Q Consensus 164 w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~ 241 (777)
-+.|+++..+ ++|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 139 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N----EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLE 139 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 3568988853 567778888999999999988765322 1 12444566788888888999888765433 24566
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.|+
T Consensus 140 ~l~~~~i 146 (348)
T 3bil_A 140 DLQKQGM 146 (348)
T ss_dssp HHHHC-C
T ss_pred HHHhCCC
Confidence 6666665
No 321
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=44.86 E-value=1.6e+02 Score=30.52 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=52.7
Q ss_pred CCcEEEEEEEe-CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh------hH
Q 004042 163 GWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (777)
Q Consensus 163 ~w~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~------~~ 235 (777)
..+++.++|.. .......++.+.+.+.+.|.++.... + . ..+......++. ..|.||+.+.. ..
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~-l--~----~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~ 325 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLE-M--T----SSDITKVALHTY--DSGAVAFASPTLNNTMMPS 325 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-G--G----GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEE-c--C----cCCHHHHHHHHH--hCCEEEEEcCccCcCchHH
Confidence 46799999843 33344567778888887787664322 2 1 233445555665 46777776543 56
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEeC
Q 004042 236 GFQVFSVAKYLGM-MGNGYVWIATD 259 (777)
Q Consensus 236 ~~~~l~~a~~~gl-~~~~~~~i~~~ 259 (777)
...++.......+ .+.....+.+.
T Consensus 326 ~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 326 VAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HHHHHHHHHhhcccCCCEEEEEEec
Confidence 7888888776454 44444444443
No 322
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=44.45 E-value=42 Score=33.08 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHHHHH-CCCeecEEEEecCCCCCCCChhHHHHHHhc-Cc-eeEEEeeEEEee---cccceeeecccccccceEEE
Q 004042 495 IDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVVV 568 (777)
Q Consensus 495 ~dl~~~l~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~---~r~~~~dfs~p~~~~~~~~~ 568 (777)
-++++.+.++ -|.++++.+ +....++..+.+ |. +|+.++.-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3577777777 488865544 456778888888 64 999765311101 11222334567777788888
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87665
No 323
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=44.11 E-value=48 Score=31.85 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=36.4
Q ss_pred ceeEEeecCCCcccceeeeccCCcceeeeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 465 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
++++||+... |.. . .++.++...++-|.+ ++++.+ ..+...-.+|.+|++|+..
T Consensus 11 ~~ikVG~~~~-p~~---------~-----il~~v~~~~~k~Gi~--veiv~F------~Dy~~pN~AL~~G~iDaN~ 64 (252)
T 4ib2_A 11 KTIKVAASAT-PHA---------E-----ILEQAKSILKKEGYQ--LEVTVF------DDYVQPNEVVESGEFDANY 64 (252)
T ss_dssp HEEEEEECTT-THH---------H-----HHHHHHHHHHHTTCE--EEEEEC------SSSSHHHHHHHTTSSSEEE
T ss_pred ceEEEEEcCC-ChH---------H-----HHHHHHHHHHhcCCe--EEEEEe------cChhhHHHHHHcCCcCeee
Confidence 5799998743 211 0 123456666777988 555555 4578889999999999864
No 324
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=44.05 E-value=94 Score=29.68 Aligned_cols=93 Identities=10% Similarity=-0.017 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCcEEEEEEEe------------CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHh
Q 004042 153 TAVAEMVSYYGWNAVSVIFVD------------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~------------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~ 220 (777)
...++.++..|.+.|=+...+ ........+.+++.+++.|+++........ ....++...++..+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHHH
Confidence 556677888999998876422 112234578899999999999876554432 23567888888888
Q ss_pred cCCCeEEEEecChhHHHHHHHHHHHcCC
Q 004042 221 LMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 221 ~~~~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
.-+++.|++.........+...|++.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8899888887666666777777777665
No 325
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.04 E-value=54 Score=32.82 Aligned_cols=83 Identities=12% Similarity=-0.022 Sum_probs=53.7
Q ss_pred HhcCCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHH
Q 004042 160 SYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (777)
Q Consensus 160 ~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~ 237 (777)
+.-.-.+|+++..+ ++|.......+++.+++.|..+..... . .+.......++.+...+.|.||+...... .
T Consensus 59 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~ 132 (332)
T 2o20_A 59 ASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D----NDVEKEEKVLETFLSKQVDGIVYMGSSLD-E 132 (332)
T ss_dssp ---CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECSSCCC-H
T ss_pred hcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-H
Confidence 33345689999853 567778888999999999998765321 1 12445566788888888999988764222 2
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
..++.+.+.++
T Consensus 133 ~~~~~l~~~~i 143 (332)
T 2o20_A 133 KIRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 34555555564
No 326
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=43.79 E-value=45 Score=32.22 Aligned_cols=78 Identities=5% Similarity=-0.007 Sum_probs=53.6
Q ss_pred CCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHH
Q 004042 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (777)
Q Consensus 163 ~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l 240 (777)
+-++|+++..+ ++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+.... ...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~ 78 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFN---ENII 78 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHH
Confidence 34578888854 567778889999999999998764322 1 224556678888888899999997632 3346
Q ss_pred H-HHHHcCC
Q 004042 241 S-VAKYLGM 248 (777)
Q Consensus 241 ~-~a~~~gl 248 (777)
+ .+.+.|+
T Consensus 79 ~~~l~~~~i 87 (277)
T 3e61_A 79 ENTLTDHHI 87 (277)
T ss_dssp HHHHHHC-C
T ss_pred HHHHHcCCC
Confidence 6 7777665
No 327
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=43.35 E-value=78 Score=31.45 Aligned_cols=81 Identities=5% Similarity=-0.025 Sum_probs=54.0
Q ss_pred CCcEEEEEEEe-CccccchHHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH-HHHH
Q 004042 163 GWNAVSVIFVD-NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQV 239 (777)
Q Consensus 163 ~w~~vaii~~~-~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~-~~~~ 239 (777)
.-.+|+++..+ ++|.......+++.+++. |+.+..... . .+.......++.+...+.|.||+...... ....
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 79 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPI 79 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH
Confidence 34578888753 446666778888889888 988765322 1 12445556778888888999988755433 3456
Q ss_pred HHHHHHcCC
Q 004042 240 FSVAKYLGM 248 (777)
Q Consensus 240 l~~a~~~gl 248 (777)
++++.+.|+
T Consensus 80 ~~~~~~~~i 88 (325)
T 2x7x_A 80 VEEAYQKGI 88 (325)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 777776665
No 328
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.73 E-value=27 Score=34.21 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=56.0
Q ss_pred hcCCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHH
Q 004042 161 YYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (777)
Q Consensus 161 ~~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 238 (777)
.-+-.+|+++..+ +.|.......+++.+++.|..+.....- .+.......++.+...+.|.||+..... ...
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~ 78 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA-----EDIVREREAVGQFFERRVDGLILAPSEG-EHD 78 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCH
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChH
Confidence 3445689998853 5577778889999999999988754321 2245566788888888999999876543 334
Q ss_pred HHHHHHHcCC
Q 004042 239 VFSVAKYLGM 248 (777)
Q Consensus 239 ~l~~a~~~gl 248 (777)
.++.+.+.|+
T Consensus 79 ~~~~~~~~~i 88 (291)
T 3egc_A 79 YLRTELPKTF 88 (291)
T ss_dssp HHHHSSCTTS
T ss_pred HHHHhhccCC
Confidence 5555555554
No 329
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=42.64 E-value=53 Score=29.70 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=40.1
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+-.+++..+.++.. ++++++.. -+. +.+|.+|++|+++...... ...+. +.++....+.+++++
T Consensus 20 ~~l~~~l~~f~~~~P-~v~l~i~~---------~~~-~~~l~~g~~D~~i~~~~~~---~~~~~-~~~l~~~~~~~v~~~ 84 (213)
T 3hhf_B 20 HLLAPLAAKFNERYP-HIRLSLVS---------SEG-YINLIERKVDIALRAGELD---DSGLR-ARHLFDSRFRVIASP 84 (213)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEC---------CST-THHHHTTSSSEEEECC--C---CSSEE-EEEEEEECEEEEECH
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe---------CCc-HHHHHhCCccEEEEEecCC---Cccce-EEeeecceEEEEeCH
Confidence 355678888888873 33344432 112 3458999999998643222 22222 467778888888865
Q ss_pred cC
Q 004042 572 RK 573 (777)
Q Consensus 572 ~~ 573 (777)
..
T Consensus 85 ~~ 86 (213)
T 3hhf_B 85 EY 86 (213)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 330
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.37 E-value=1e+02 Score=26.98 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=47.8
Q ss_pred EEEEEEE-eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-----hHHHHH
Q 004042 166 AVSVIFV-DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-----SLGFQV 239 (777)
Q Consensus 166 ~vaii~~-~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-----~~~~~~ 239 (777)
++.|+|. ........++.+.+.+.+.|+++... .+. ..+....+.++.+ .|.|++.++. +. ..+
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~-~~~------~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~-~~f 71 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMV-DLR------AVDPQELIEAVSS--ARGIVLGTPPSQPSEAV-ATA 71 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEE-ETT------TCCHHHHHHHHHH--CSEEEEECCBSSCCHHH-HHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE-ECC------CCCHHHHHHHHHh--CCEEEEEcCCcCCchhH-HHH
Confidence 4778883 33344456788888888888775432 222 3344555555543 5666665443 22 567
Q ss_pred HHHHHHcCCCCCCeEEEEeCcc
Q 004042 240 FSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
+.......+.+.....+++..|
T Consensus 72 l~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 72 LSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHhhhhCCCEEEEEEcCCC
Confidence 7777665554433334443333
No 331
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.07 E-value=1.1e+02 Score=24.76 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=44.1
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC--hhHHHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~l~~ 242 (777)
.+|.++ +++. .....++..+++.|..+.. . .+....+..+++..+++|++... ..+...++++
T Consensus 4 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~ 68 (127)
T 3i42_A 4 QQALIV-EDYQ---AAAETFKELLEMLGFQADY---V--------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQ 68 (127)
T ss_dssp EEEEEE-CSCH---HHHHHHHHHHHHTTEEEEE---E--------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHH
T ss_pred ceEEEE-cCCH---HHHHHHHHHHHHcCCCEEE---E--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 355544 3332 3566778888888876542 1 23345566666678999999754 3467788888
Q ss_pred HHHcC
Q 004042 243 AKYLG 247 (777)
Q Consensus 243 a~~~g 247 (777)
.++..
T Consensus 69 l~~~~ 73 (127)
T 3i42_A 69 LRALP 73 (127)
T ss_dssp HHHSC
T ss_pred HHhhh
Confidence 88863
No 332
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=42.05 E-value=63 Score=32.56 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=49.0
Q ss_pred eEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHh
Q 004042 141 FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (777)
Q Consensus 141 ~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~ 220 (777)
++..+++.......|.. .+++.+|+....-.......+.+.+++.|+++....+-.. .+.....++..
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~------~~~~~~~~~~~ 79 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEK------GDAARYVEEAR 79 (332)
T ss_dssp ------------------------CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCST------THHHHHHHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCc------chHHHHHHHHH
Confidence 44444444444444432 2678888742221114566788888889988765443322 23444455554
Q ss_pred cCCCeEEEEecChhHHHHHHHHHHHc
Q 004042 221 LMESRVIVLHVSPSLGFQVFSVAKYL 246 (777)
Q Consensus 221 ~~~~~vIvl~~~~~~~~~~l~~a~~~ 246 (777)
..+.|.||.++.......+++.+.+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc
Confidence 45688888888777788888888753
No 333
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=42.00 E-value=47 Score=32.39 Aligned_cols=83 Identities=6% Similarity=0.016 Sum_probs=52.9
Q ss_pred HhcCCcEEEEEEEe--C--ccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH
Q 004042 160 SYYGWNAVSVIFVD--N--EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (777)
Q Consensus 160 ~~~~w~~vaii~~~--~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~ 235 (777)
+.-+-+.|+++..+ + +|.....+.+++.+++.|..+.....-. .........+.+...+.|.||+......
T Consensus 4 ~~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 78 (288)
T 3gv0_A 4 RTGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-----AKDSMVPIRYILETGSADGVIISKIEPN 78 (288)
T ss_dssp ---CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-----GGGTTHHHHHHHHHTCCSEEEEESCCTT
T ss_pred ccCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-----chhHHHHHHHHHHcCCccEEEEecCCCC
Confidence 33455689998864 2 6778888999999999999876542211 1233344555566678999988754322
Q ss_pred HHHHHHHHHHcCC
Q 004042 236 GFQVFSVAKYLGM 248 (777)
Q Consensus 236 ~~~~l~~a~~~gl 248 (777)
...++.+.+.|+
T Consensus 79 -~~~~~~l~~~~i 90 (288)
T 3gv0_A 79 -DPRVRFMTERNM 90 (288)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -cHHHHHHhhCCC
Confidence 245667777665
No 334
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=41.78 E-value=60 Score=29.22 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=44.3
Q ss_pred EEEEEEEeCccc----------cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecCh
Q 004042 166 AVSVIFVDNEYG----------RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (777)
Q Consensus 166 ~vaii~~~~~~g----------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~ 233 (777)
+++||...|.-. ...-..+.+.+++.|+++.....++.+ ...+...+.+..+ .+.|+|+..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 788887543110 122456888999999999888777644 6777777776554 568999986643
No 335
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=41.70 E-value=1.1e+02 Score=28.34 Aligned_cols=86 Identities=7% Similarity=-0.070 Sum_probs=56.4
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh----hHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~l 240 (777)
.+|.+.....+.-.-+..-+...++..|+++..-.. .......+..+++.++++|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~--------~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV--------DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS--------SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 466666655555555677788889999999874321 1233455556666689999997753 4577788
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 004042 241 SVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 241 ~~a~~~gl~~~~~~~i~~ 258 (777)
+++++.++...-.++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHTTCGGGCEEEEES
T ss_pred HHHHhcCCCCCCeEEEEC
Confidence 888887764334455554
No 336
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=41.48 E-value=85 Score=30.78 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=37.6
Q ss_pred CCCChhhhhhCC--CCeEEeeC------chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 681 PINGIESLRKSD--DPIGYQEG------SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 681 ~i~s~~dl~~~~--~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.|+|++||.+.. .++|+..+ .....+. +..+.+...+... +.-...+++++ |+.+++..-.+.-
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~-~~YGl~~~~~~~~-~~g~~~~A~~~----~~~~v~~~wsp~~ 201 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFT-KTYGMTFGGTYPM-QIGLVYDAVKS----GKMDIVLAYSTDG 201 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHH-HHHCCCCSEEEEC-CGGGHHHHHHH----TSCSEEEEETTCH
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHHHH-HHcCCCccccccc-CHHHHHHHHHc----CCCeEEEEeCCCc
Confidence 789999998653 34666532 2222333 3344432223233 33356888999 9998888876654
No 337
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=41.16 E-value=36 Score=35.62 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHhcCCcEEEEEEEeCcccc-chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 155 VAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 155 ~~~~l~~~~w~~vaii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
+.++++ +| +|+.||+.+..... ...+.+.+.++ |+++..-....++ .+.......++.+++.++|+||..+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 445555 67 89999985443332 25677777776 7765432233333 456778888888998999999987665
Q ss_pred --hHHHHHHHHH
Q 004042 234 --SLGFQVFSVA 243 (777)
Q Consensus 234 --~~~~~~l~~a 243 (777)
-|+..++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4566666554
No 338
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=41.04 E-value=54 Score=31.71 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHhcCCcEEEEEEEe--CccccchHHHHHHHHhhcceE-EEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEec
Q 004042 158 MVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCR-ISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (777)
Q Consensus 158 ~l~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 231 (777)
-|+.-.-++|+++..+ ++|.....+.+++.+++.|.. +.... .. .+...-...++.+...+.|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~----~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFS-TN----SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-SS----CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEe-CC----CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3455566789999864 667788889999999999998 65422 21 2245566678888888999999876
No 339
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=40.57 E-value=54 Score=29.21 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=42.2
Q ss_pred EEEEEEEeCcc--c---cchHHHHHHH----HhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 166 AVSVIFVDNEY--G---RNGVSALNDK----LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 166 ~vaii~~~~~~--g---~~~~~~~~~~----~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
+++||...|+- | ......+.+. +++.|+++.....++.+ ...+...+++..+.+.|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777754432 1 1234567788 88999998877777644 778888888887656899998654
No 340
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=40.18 E-value=93 Score=29.85 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
..++...... -.-+.+++ |..|.....+.++..-+.-++.|.....+ .+.+ ++.+.+..++|+|++.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-------~~~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-------IDTV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-------CSTH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-------CCHH--HHHHHHHcCCCEEEEecc
Confidence 3344444444 66777776 55676777777777655557776644433 2333 466688999999999876
Q ss_pred h---hHHHHHHHHHHHcCCC
Q 004042 233 P---SLGFQVFSVAKYLGMM 249 (777)
Q Consensus 233 ~---~~~~~~l~~a~~~gl~ 249 (777)
. .+...+++.++++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 5 5788999999999884
No 341
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.95 E-value=98 Score=31.02 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=55.9
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~ 242 (777)
+.|+++.. +++|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-D----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 47888875 3567788889999999999998764322 1 124556677888888899999987654332 46677
Q ss_pred HHHcCC
Q 004042 243 AKYLGM 248 (777)
Q Consensus 243 a~~~gl 248 (777)
+.+.++
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777775
No 342
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=39.79 E-value=91 Score=30.17 Aligned_cols=80 Identities=10% Similarity=-0.046 Sum_probs=53.3
Q ss_pred cCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHH
Q 004042 162 YGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (777)
Q Consensus 162 ~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~ 239 (777)
-.-.+|+++.. +++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+....... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~ 79 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---E--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PE 79 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HH
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HH
Confidence 34468999885 4567778888999999999998765321 1 124445667888888899999987543322 34
Q ss_pred HHHHHHcCC
Q 004042 240 FSVAKYLGM 248 (777)
Q Consensus 240 l~~a~~~gl 248 (777)
++.+. .++
T Consensus 80 ~~~l~-~~i 87 (285)
T 3c3k_A 80 LQNII-GAF 87 (285)
T ss_dssp HHHHH-TTS
T ss_pred HHHHh-cCC
Confidence 55555 554
No 343
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=39.76 E-value=69 Score=34.00 Aligned_cols=145 Identities=10% Similarity=0.012 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHHHhcCcEEEE--cCCCh--h-----HHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHH
Q 004042 81 SGFIGMVEALRFMETDIVAII--GPQCS--T-----VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQ 151 (777)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~avi--Gp~~s--~-----~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~ 151 (777)
.+..+...+.++++.|+.+++ -...+ . ....+...+...++.+|.+.|.. +-+.....-..+.|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 456667777788887776443 21111 1 25677888899999999876643 2221101112222321
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEe
Q 004042 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLH 230 (777)
Q Consensus 152 ~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~ 230 (777)
.. -+|++|.+... ....+...+.+.|+-+.....+-.. .+.++.+.+..+.+ .++++|+++
T Consensus 148 ---------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 148 ---------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp ---------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEEE
T ss_pred ---------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEEE
Confidence 11 46999975554 4455666777777766655555433 35778888888865 578999999
Q ss_pred cCh-hHHHHHHHHHHHcCC
Q 004042 231 VSP-SLGFQVFSVAKYLGM 248 (777)
Q Consensus 231 ~~~-~~~~~~l~~a~~~gl 248 (777)
..+ .+.+.+++.++....
T Consensus 210 ~E~i~~~~~f~~~a~~~~~ 228 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKRVTK 228 (457)
T ss_dssp ESCCSCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHhcC
Confidence 988 678888888887643
No 344
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.65 E-value=75 Score=30.52 Aligned_cols=79 Identities=4% Similarity=0.081 Sum_probs=53.8
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
+.|+++.. +++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46888875 3567778888999999999988765321 1 123444566788888889999886543 22335677
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 345
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=39.60 E-value=1.3e+02 Score=28.00 Aligned_cols=87 Identities=6% Similarity=-0.054 Sum_probs=57.5
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEE--ecCh----hHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL--HVSP----SLGFQ 238 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl--~~~~----~~~~~ 238 (777)
.+|.+-....+.-.-+..-+...++..|++|..-.. .......++.+++.++|+|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~--------~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV--------DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS--------SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC--------CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 356555545555555677788889999999874321 223456677777788999999 5543 34677
Q ss_pred HHHHHHHcCCCCCCeEEEEeC
Q 004042 239 VFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 239 ~l~~a~~~gl~~~~~~~i~~~ 259 (777)
+++++++.|+...-.+|++..
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 888888888743334666643
No 346
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=39.35 E-value=57 Score=32.22 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=37.4
Q ss_pred CCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecc
Q 004042 681 PINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDER 747 (777)
Q Consensus 681 ~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~ 747 (777)
.+.++++|. +++|++.--..+.+||. +.+.+ .+++..+..-|..-.+ |-.|++++--
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDiv 171 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLV 171 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecc
Confidence 566788887 89999988888899994 44544 3444444444544444 6667766643
No 347
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=39.25 E-value=68 Score=31.05 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=53.4
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-hHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~l~ 241 (777)
+.|+++.. +++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 46788875 3567778888999999999988765321 1 123444566777878889998886533 33345677
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777675
No 348
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=38.20 E-value=1e+02 Score=31.95 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHhcCCcEEEEEEEeCccccchHHHHHHHHhhc------ceEEEEeeecCCCC-CCChhhHHHHHHHHhcCC--C---eE
Q 004042 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER------RCRISYKSGIPPES-GVNTGYVMDLLVKVALME--S---RV 226 (777)
Q Consensus 159 l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~------g~~v~~~~~~~~~~-~~~~~d~~~~l~~l~~~~--~---~v 226 (777)
++.++.+++.+|+....... ..+.+.+.+++. |+++.. ..++.+. ..+.+.+....+.+++.+ . +.
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46677889999986544333 566777777766 666642 2344321 124577888888888877 7 99
Q ss_pred EEEecCh--hHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 227 IVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 227 Ivl~~~~--~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
||..+.+ -|+..++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 9977665 467777766665554 45555554
No 349
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.07 E-value=52 Score=32.42 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=53.5
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH-HHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~-~~~~l~ 241 (777)
.+|+++.. ++.|.......+++.+++.|..+..... . .+...-...++.+...+.|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 47888874 3557777788899999999988765322 1 12445556777777778999988654432 245667
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776665
No 350
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=37.99 E-value=1.8e+02 Score=28.51 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=42.4
Q ss_pred EEEEccCCCChHHHHHH-HHHHHhc-CcEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 72 NITMQSSNCSGFIGMVE-ALRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 72 ~~~~~D~~~~~~~a~~~-a~~l~~~-~v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
++.+.|+=|...+--+. +.+|..+ .+..|||+..|+.+..+.+++...+.|..-.
T Consensus 185 ~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~I 241 (297)
T 3dnf_A 185 EVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHI 241 (297)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEe
Confidence 34577888877665554 4555555 7889999999999999999999988876543
No 351
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=37.76 E-value=54 Score=32.17 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=43.8
Q ss_pred CCCChhhh-hhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCC
Q 004042 681 PINGIESL-RKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCS 759 (777)
Q Consensus 681 ~i~s~~dl-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~ 759 (777)
.+++++|| . +++|++.--..+.+||. +.+.+ .+++..+..-|..-.+ |-.|++++--.+-.-.-++ +
T Consensus 105 ~~~~~~~l~~--~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~ap~~------GlADaIvDivsTG~TLraN--g 172 (289)
T 2vd3_A 105 TIRGPEDIPR--GAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIAPFI------GVADLITDLSSTGTTLRMN--H 172 (289)
T ss_dssp SCCSGGGCCT--TCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGTTTT------TSCSEEEEEESSTHHHHHT--T
T ss_pred CCCCHHHhcC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC--C
Confidence 66788998 6 88999988888899994 45553 3444444333333222 6667776643333222222 4
Q ss_pred eEEeccccc
Q 004042 760 FRIVGQEFT 768 (777)
Q Consensus 760 l~~~~~~~~ 768 (777)
|+.++..+.
T Consensus 173 L~~ie~I~~ 181 (289)
T 2vd3_A 173 LRVIDTILE 181 (289)
T ss_dssp EEEEEEEEE
T ss_pred CEEeEEEEe
Confidence 555544333
No 352
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=37.33 E-value=61 Score=31.56 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHhhccC-CceEEe
Q 004042 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNEL-QVPLLS 125 (777)
Q Consensus 88 ~a~~l~~~~v~aviGp~~s~~~~~va~~~~~~-~iP~Is 125 (777)
.+..|.+.|+.+|+-+-++.++.++..+-+.. ++|+|.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 34455566999999865555554556666777 899997
No 353
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=37.32 E-value=58 Score=32.56 Aligned_cols=79 Identities=9% Similarity=-0.052 Sum_probs=54.2
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC--CeEEEEecChh-HHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPS-LGFQV 239 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vIvl~~~~~-~~~~~ 239 (777)
.+|+++.. ++.|.......+++.+++.|+++..... . .+...-...++.+...+ .|.||+..... .....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 57888875 3567777888899999999988765421 1 12444556777777778 99998865543 33456
Q ss_pred HHHHHHcCC
Q 004042 240 FSVAKYLGM 248 (777)
Q Consensus 240 l~~a~~~gl 248 (777)
++.+.+.++
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777776665
No 354
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.91 E-value=59 Score=31.70 Aligned_cols=80 Identities=5% Similarity=-0.097 Sum_probs=52.8
Q ss_pred CCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHH---HHHHHhcCCCeEEEEecChhHHH
Q 004042 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMD---LLVKVALMESRVIVLHVSPSLGF 237 (777)
Q Consensus 163 ~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~---~l~~l~~~~~~vIvl~~~~~~~~ 237 (777)
.-.+|+++.. +++|.....+.+++.+++.|..+..... . .+...-.. .++.+...+.|.||+...... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 80 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C----GESTPREQALEAVRFLIGRDCDGVVVISHDLH-D 80 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C----SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-H
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C----CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-H
Confidence 4457888874 3567778888999999999998764321 1 11233445 677888888999998654432 3
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
..++.+.+.|+
T Consensus 81 ~~~~~l~~~~i 91 (290)
T 2rgy_A 81 EDLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHhhcCC
Confidence 45566666665
No 355
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=36.55 E-value=18 Score=35.82 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=47.1
Q ss_pred eeeHHHHHHHHHH---C---CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccc--ceeee-cc-ccc
Q 004042 492 GFCIDVFTAAVNL---L---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT--KIVDF-SQ-PYA 561 (777)
Q Consensus 492 G~~~dl~~~l~~~---l---~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~--~~~df-s~-p~~ 561 (777)
.+..+++..+.++ . +.++++. . ++...++.+|.+|++|+++..-....+.. +.+.+ .. ++.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~--~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWY--K-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEE--E-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEE--e-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4567788889888 7 6664444 3 56889999999999999875321111100 11112 24 788
Q ss_pred ccceEEEEeccC
Q 004042 562 ASGLVVVVPFRK 573 (777)
Q Consensus 562 ~~~~~~~v~~~~ 573 (777)
...+.+++++..
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 888899888755
No 356
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=36.35 E-value=1.3e+02 Score=28.86 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC--
Q 004042 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-- 232 (777)
Q Consensus 155 ~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-- 232 (777)
++++.+ -|..-+++++ |..|.....+.++..-+.-.+.|.....+ .+. -|+.+.+..++|+|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-------id~--yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-------VKE--SQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-------CSH--HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-------ccH--HHHHHHHHcCCCeeehHHhhc
Confidence 344544 4778888776 66677788888887666667776544333 122 2577777789999998654
Q ss_pred -hhHHHHHHHHHHHcCCCC
Q 004042 233 -PSLGFQVFSVAKYLGMMG 250 (777)
Q Consensus 233 -~~~~~~~l~~a~~~gl~~ 250 (777)
..+...+...|.++||..
T Consensus 138 ~~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 138 TERELESLLEYARSYGMEP 156 (258)
T ss_dssp CHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhHHH
Confidence 467899999999999963
No 357
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=36.17 E-value=79 Score=28.09 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEe
Q 004042 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (777)
Q Consensus 151 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~ 230 (777)
+++....+.++++.++|.++- |........+.+-+.+.-.|+++.. ++ .++....+++-+..+.++++++
T Consensus 14 HGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNV---VS------LEKAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---EC------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---EE------HHHHHHHHhcccCCCceEEEEE
Confidence 477888899999999998773 4444445566666666667887653 21 4455566666555678999999
Q ss_pred cChhHHHHHH
Q 004042 231 VSPSLGFQVF 240 (777)
Q Consensus 231 ~~~~~~~~~l 240 (777)
-++.++..++
T Consensus 84 k~p~d~~~lv 93 (164)
T 1nrz_A 84 TNPHDVLTMV 93 (164)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888665
No 358
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=35.81 E-value=88 Score=30.06 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=68.6
Q ss_pred EEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHH
Q 004042 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (777)
Q Consensus 33 ~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aviGp~~s~~~~ 110 (777)
+|+++...... ...-..|++.|+++.+ .++.........+...+.+.+.+++.. .+.+|+... ...+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHHH
Confidence 68888776644 5566788888877642 222222244556777888888888876 588999744 34444
Q ss_pred HHHHhhccC------CceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH
Q 004042 111 IVSYVSNEL------QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (777)
Q Consensus 111 ~va~~~~~~------~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~ 160 (777)
.+...+... ++.++++.... +.....|.+..+..+...+++..++++.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 444444433 34567654322 2222234455556667777777777643
No 359
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.52 E-value=68 Score=32.00 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=53.0
Q ss_pred CCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHH
Q 004042 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (777)
Q Consensus 163 ~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l 240 (777)
.-.+|+++.. .++|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+....... ..+
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 132 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHV 132 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC---C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHH
Confidence 3457999875 4667788889999999999988765321 1 113344567788887889988886543222 455
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+.+.+.++
T Consensus 133 ~~l~~~~i 140 (332)
T 2hsg_A 133 EELKKSPV 140 (332)
T ss_dssp HHHTTSSS
T ss_pred HHHHhCCC
Confidence 66655554
No 360
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.50 E-value=1.4e+02 Score=24.22 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=43.5
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l~~ 242 (777)
.+|.++- ++. .....++..+++.|..+... .+....+..+++..+++|++.... .+...++++
T Consensus 7 ~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 7 KRILVVD-DDQ---AMAAAIERVLKRDHWQVEIA-----------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp CEEEEEC-SCH---HHHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred ccEEEEE-CCH---HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 4565553 332 24566777787888766421 233445566667789999997554 456778888
Q ss_pred HHHcCC
Q 004042 243 AKYLGM 248 (777)
Q Consensus 243 a~~~gl 248 (777)
.++...
T Consensus 72 l~~~~~ 77 (132)
T 3lte_A 72 LRQNKV 77 (132)
T ss_dssp HHTTTC
T ss_pred HHhcCc
Confidence 887653
No 361
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=35.40 E-value=26 Score=34.25 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=52.9
Q ss_pred cEEEEEEE--e--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh-HHHHH
Q 004042 165 NAVSVIFV--D--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQV 239 (777)
Q Consensus 165 ~~vaii~~--~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~ 239 (777)
++|+++.. + ++|.....+.+++.+++.|..+.....-. . .+.......++.+...+.|.||+..... .....
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEK-E--EDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCC-C--CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 57888875 3 56777888899999999998876432110 1 1244556677888888899998865443 33345
Q ss_pred HHHHHHcCC
Q 004042 240 FSVAKYLGM 248 (777)
Q Consensus 240 l~~a~~~gl 248 (777)
++.+.+.|+
T Consensus 83 ~~~~~~~~i 91 (289)
T 3brs_A 83 AKEIKDAGI 91 (289)
T ss_dssp HTTTGGGTC
T ss_pred HHHHHHCCC
Confidence 666655554
No 362
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=35.13 E-value=88 Score=29.84 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 501 AVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 501 l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
++++.|.+ ++++.+ ..+.....+|.+|++|+..
T Consensus 29 l~k~~Gi~--veiv~F------~Dy~~pN~AL~~G~IDaN~ 61 (245)
T 3up9_A 29 LAADAGIK--LDIVEY------TDYVQPNTALNDGDLDANF 61 (245)
T ss_dssp THHHHTEE--EEEEEC------SSSHHHHHHHHTTSCSEEE
T ss_pred HHHHcCCe--EEEEEe------cCcccHHHHHHcCCCceec
Confidence 44556877 556665 4588889999999999864
No 363
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=35.09 E-value=62 Score=31.06 Aligned_cols=78 Identities=9% Similarity=0.011 Sum_probs=52.3
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~ 242 (777)
++|+++.. +++|.....+.+++.+++.|..+.... . . .+...-...++.+...+.|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY-S--D--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE-C--T--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc-C--C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 47888875 355777788899999999998875432 1 1 12445566788888888998888654322 245666
Q ss_pred HHHcCC
Q 004042 243 AKYLGM 248 (777)
Q Consensus 243 a~~~gl 248 (777)
+.+.++
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666564
No 364
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=34.71 E-value=60 Score=31.59 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEee
Q 004042 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (777)
Q Consensus 496 dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 543 (777)
.++..+-+.+|+++++.. . ++ .-+...|.+|++|+....
T Consensus 182 ~v~~~~Le~~Gy~Ve~~~--~------~~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 182 NVIGKVLEDLGYEVTLTQ--V------EA-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp HHHHHHHHHHTCEEEEEE--C------CT-THHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHcCCceEEEE--C------Ch-HHHHHHHHCCCCeEEehh
Confidence 345555567899976655 2 22 566789999999998654
No 365
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=34.37 E-value=3.1e+02 Score=27.99 Aligned_cols=92 Identities=7% Similarity=0.031 Sum_probs=51.8
Q ss_pred HHHhcCCcEEEEEEEe-CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh---
Q 004042 158 MVSYYGWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--- 233 (777)
Q Consensus 158 ~l~~~~w~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--- 233 (777)
++....-+++.++|.. .......++.+.+.+.+.|.++.... +. ..+......++. ..|.|++.+..
T Consensus 246 ~~~~~~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~-~~------~~~~~~~~~~~~--~~d~ii~gsp~~~~ 316 (402)
T 1e5d_A 246 YAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMW-CK------ACHHSQIMSEIS--DAGAVIVGSPTHNN 316 (402)
T ss_dssp HHHCCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-TT------TSCHHHHHHHHH--TCSEEEEECCCBTT
T ss_pred HhcCCCCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEE-CC------CCCHHHHHHHHH--HCCEEEEECCccCC
Confidence 3443335789988843 22333446777777877776654322 22 234455555555 35677776532
Q ss_pred ---hHHHHHHHHHHHcCCCCCCeEEEEe
Q 004042 234 ---SLGFQVFSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 234 ---~~~~~~l~~a~~~gl~~~~~~~i~~ 258 (777)
..+..++.......+.+.....+.+
T Consensus 317 ~~~~~~~~~l~~l~~~~l~~k~~~~f~t 344 (402)
T 1e5d_A 317 GILPYVAGTLQYIKGLRPQNKIGGAFGS 344 (402)
T ss_dssp BCCHHHHHHHHHHHHTCCCSCEEEEEEE
T ss_pred CchHHHHHHHHHhhhcccCCCEEEEEEc
Confidence 3577777777765554443444443
No 366
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=34.36 E-value=63 Score=31.41 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.7
Q ss_pred HHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
++.+.++.|.++ +++.+ ..|.....+|.+|++|+..
T Consensus 42 ~k~~l~k~Gi~v--eiv~F------~Dy~~pN~AL~~G~IDaN~ 77 (275)
T 3gxa_A 42 IQPELEKKGYTV--KLVEF------TDYVRPNLALAEGELDINV 77 (275)
T ss_dssp HHHHHHTTTCEE--EEEEE------SSSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHHcCCeE--EEEEe------CCcHhHHHHHHcCCCCeee
Confidence 355667788884 44554 4588889999999999864
No 367
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=34.15 E-value=73 Score=28.35 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEe
Q 004042 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (777)
Q Consensus 151 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~ 230 (777)
+++....+.++++.++|.++- |........+.+-+.+.-.|+++.. ++ .++....+.+-+..+.++++++
T Consensus 17 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHV---VD------VAKMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---EC------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---EE------HHHHHHHHhccccCCcEEEEEE
Confidence 467778899999999998773 4444445566666666667887653 21 4455566665555778999999
Q ss_pred cChhHHHHHH
Q 004042 231 VSPSLGFQVF 240 (777)
Q Consensus 231 ~~~~~~~~~l 240 (777)
-++.++..++
T Consensus 87 k~p~d~~~lv 96 (165)
T 1vsq_C 87 TNPTDVERLV 96 (165)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888665
No 368
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=34.02 E-value=34 Score=33.49 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=35.8
Q ss_pred ChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEeccC
Q 004042 524 SYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 524 ~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~~~ 573 (777)
.-.+.+.++.+|.+|++..+..++.+..+.---..|+...++.+++++..
T Consensus 73 GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 73 GSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp CHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred CcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 46778999999999998876666543332222235778889999998776
No 369
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=33.94 E-value=2.6e+02 Score=25.02 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=39.8
Q ss_pred CCChhhhhhCCCCe-EEeeCchHHHHHHhhhcccc---ccccccCCHHHHHHHHhcCCCCCCceEEEecchhhHH
Q 004042 682 INGIESLRKSDDPI-GYQEGSFAEYYLSQELNISK---SRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVEL 752 (777)
Q Consensus 682 i~s~~dl~~~~~~i-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~ 752 (777)
..+++||. +.++ ....++....++.+...... ......++.+.....++. |..-+++-......+
T Consensus 95 ~~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~ 163 (219)
T 3kos_A 95 IQTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHL 163 (219)
T ss_dssp CSSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHH
T ss_pred cCCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHH
Confidence 34688998 6664 44455656666643222111 223567899999999999 766677765444433
No 370
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=33.76 E-value=1.2e+02 Score=28.96 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEEe--CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 004042 152 MTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (777)
Q Consensus 152 ~~a~~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl 229 (777)
....++.++..|.+.|-+.... .....+..+.+++.+++.|+++........ .....+...++..+.-+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3556777888999988866421 122344567899999999998765443321 23567777777777778888887
Q ss_pred ecChhHHHHHHHHHHHcCC
Q 004042 230 HVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 230 ~~~~~~~~~~l~~a~~~gl 248 (777)
.........+.+.|++.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 6555667777777777675
No 371
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=33.69 E-value=83 Score=28.18 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=40.3
Q ss_pred cEEEEEEEeCc--cc---cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEec
Q 004042 165 NAVSVIFVDNE--YG---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (777)
Q Consensus 165 ~~vaii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 231 (777)
-+++||...|+ .| ......+.+.+++.|+++.....++.+ ...+...+++..+. .|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhc-CCEEEEcC
Confidence 46777775443 12 133456778888888888777767643 66777777766543 77777754
No 372
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=33.63 E-value=45 Score=32.55 Aligned_cols=81 Identities=5% Similarity=0.042 Sum_probs=47.4
Q ss_pred CCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHH
Q 004042 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (777)
Q Consensus 163 ~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l 240 (777)
.-.+|+++.. +++|.....+.+++.+++.|.++... +... .+.......++.+...+.|.||+....... ..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 81 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALTD-DNL 81 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CH
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHH
Confidence 3457888875 46677788889999999999887643 0111 112333456777777889999887654322 455
Q ss_pred HHHHHcCC
Q 004042 241 SVAKYLGM 248 (777)
Q Consensus 241 ~~a~~~gl 248 (777)
+.+.+.++
T Consensus 82 ~~l~~~~i 89 (290)
T 3clk_A 82 QLLQSSDV 89 (290)
T ss_dssp HHHHCC--
T ss_pred HHHHhCCC
Confidence 66665554
No 373
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=33.21 E-value=78 Score=30.27 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=25.8
Q ss_pred HHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 498 FTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 498 ~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
++.+.++-|.+ ++++.+ ..+.....+|.+|++|+..
T Consensus 22 v~~~l~k~Gi~--veiv~F------~dy~~pN~AL~~G~iD~n~ 57 (246)
T 4ef1_A 22 VKPLLEKEGVK--LEVTTY------TDYVLPNKALESGDIDANY 57 (246)
T ss_dssp HHHHHHHTTEE--EEEEEC------SSSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHhcCCE--EEEEEe------CCchhHHHHHHCCCCCEEe
Confidence 44555666887 555555 3577778899999999865
No 374
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.65 E-value=56 Score=31.98 Aligned_cols=80 Identities=6% Similarity=-0.028 Sum_probs=54.5
Q ss_pred CCcEEEEEEE-------eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH
Q 004042 163 GWNAVSVIFV-------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (777)
Q Consensus 163 ~w~~vaii~~-------~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~ 235 (777)
.-+.|++|.. .++|.....+.+++.+++.|..+.... .. .+...-...++.+...+.|.||+......
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 80 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTV---SN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN 80 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECC---CC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEc---CC--CChHHHHHHHHHHHhCCcCEEEEcCcccC
Confidence 3457888872 456777888999999999999876422 11 12344556778888889999998754322
Q ss_pred HHHHHHHHHHcCC
Q 004042 236 GFQVFSVAKYLGM 248 (777)
Q Consensus 236 ~~~~l~~a~~~gl 248 (777)
...++.+.+.|+
T Consensus 81 -~~~~~~l~~~~i 92 (295)
T 3hcw_A 81 -DPIKQMLIDESM 92 (295)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHhCCC
Confidence 245666777665
No 375
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=32.40 E-value=1.6e+02 Score=29.51 Aligned_cols=75 Identities=11% Similarity=-0.029 Sum_probs=50.7
Q ss_pred CcEEEEEEEeCcccc----chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHH
Q 004042 164 WNAVSVIFVDNEYGR----NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (777)
Q Consensus 164 w~~vaii~~~~~~g~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~ 239 (777)
.+++.+|+. ...|. ...+.+.+.+++.|+++....+-. ..+.....+++...+.|.||.++.......+
T Consensus 24 m~~i~vI~N-P~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIYN-PTSGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEEC-TTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEEC-CCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 478888884 22332 345678888999998876544332 2345556666666778888888877777778
Q ss_pred HHHHHH
Q 004042 240 FSVAKY 245 (777)
Q Consensus 240 l~~a~~ 245 (777)
++.+.+
T Consensus 97 ~~~l~~ 102 (337)
T 2qv7_A 97 VNGIAE 102 (337)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877743
No 376
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=32.28 E-value=81 Score=30.00 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.2
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHH
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEY 705 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~ 705 (777)
..++|++||.+ |.+|++..+.+.+.
T Consensus 91 ~k~ksl~dL~~-Ga~Iaipnd~tn~~ 115 (240)
T 3tqw_A 91 KKITALTQLKT-GAKIAVPSDPSNEA 115 (240)
T ss_dssp SSCSSGGGCCT-TCEEEEECSHHHHH
T ss_pred CCCCCHHHhcC-CCEEEEecCccHHH
Confidence 57999999986 77899998876443
No 377
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=31.76 E-value=41 Score=32.60 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=47.3
Q ss_pred eeHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeec---ccceeeecccccccceEEE
Q 004042 493 FCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN---RTKIVDFSQPYAASGLVVV 568 (777)
Q Consensus 493 ~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~---r~~~~dfs~p~~~~~~~~~ 568 (777)
+..+++..+.++. +.++++.. ++-..++.+|.+|++|+++....++.+ +...+ ...|+....++++
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4456677777776 55644443 357788999999999998764433221 01122 3578889999999
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+++..
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98765
No 378
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.40 E-value=66 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=43.6
Q ss_pred CcEEEEEEEeCcc--c---cchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 164 WNAVSVIFVDNEY--G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 164 w~~vaii~~~~~~--g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
-.+++||...|+- | ......+.+.+++.|.++.....++ ++ +.+...+++..+.+.|+||..+.
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 3578888765432 2 2334578888999999887655553 34 67777787776557899998654
No 379
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=31.38 E-value=1.1e+02 Score=31.21 Aligned_cols=110 Identities=5% Similarity=-0.028 Sum_probs=60.0
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcc-eEEEEeeecCCCCCCChhhHHHHHH
Q 004042 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERR-CRISYKSGIPPESGVNTGYVMDLLV 217 (777)
Q Consensus 139 ~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~ 217 (777)
|+-+...+.... .+.++++.+ +++.+|+....+.. ..+.+.+.+ +.| +.+..-....+. .+.......++
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~--p~~~~v~~~~~ 81 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKT--KTFEQYQETLE 81 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGG--CSHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCC--CCHHHHHHHHH
Confidence 444555554332 234455555 88998886544333 566777777 667 332211112222 34678888889
Q ss_pred HHhcCCC---eEEEEecCh--hHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 004042 218 KVALMES---RVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATDW 260 (777)
Q Consensus 218 ~l~~~~~---~vIvl~~~~--~~~~~~l~~a~~~gl~~~~~~~i~~~~ 260 (777)
.+++.++ |.||..+.+ -|+..++......|+ .++-|-|..
T Consensus 82 ~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rgi---p~i~IPTT~ 126 (354)
T 1xah_A 82 YILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGV---HFIQVPTTI 126 (354)
T ss_dssp HHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTCC---EEEEEECST
T ss_pred HHHHcCCCCCceEEEECChHHHHHHHHHHHHhccCC---CEEEECCcc
Confidence 9988887 898877665 466667666554443 455555543
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.33 E-value=23 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.7
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 97 v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
+.+++||.+|+=......+++.+++|+|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999998888899999999999975
No 381
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=31.14 E-value=70 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.0
Q ss_pred HHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEE
Q 004042 500 AAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (777)
Q Consensus 500 ~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 541 (777)
.+.++.|.+ ++++.+ ..|.....+|.+|++|+..
T Consensus 27 ~l~~k~Gi~--veiv~F------~Dy~~pN~AL~~G~IDaN~ 60 (237)
T 3k2d_A 27 VAKEKYGLD--VELVTF------TDYVTPNAALDDGSIDMNA 60 (237)
T ss_dssp HHHHHHCCC--EEEEEE------SCTTSHHHHHHHTSCSEEE
T ss_pred HHHHhcCCE--EEEEEe------CChHhHHHHHHcCCCCeec
Confidence 344477888 455555 4578889999999999865
No 382
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=31.12 E-value=2.5e+02 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHhcCCCCCCceEEEecchhhHHHhhCCCCeEEe
Q 004042 721 LRTPEDYAKALKDGPGKGGVAAVVDERPYVELFLSSQCSFRIV 763 (777)
Q Consensus 721 ~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~~~~~~~~~l~~~ 763 (777)
..+..+..+.+.+ |++++.+.....+..+.+...++.++
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKAKPEVINV 254 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTCEEE
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhcCCCeeee
Confidence 3567888899999 89988887766665555544455443
No 383
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.82 E-value=1.3e+02 Score=24.91 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=43.0
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC--hhHHHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~l~~ 242 (777)
.+|.++ +++. .....++..+++.|..+.. . .+....+..+++..+|+|++... ..+...++++
T Consensus 7 ~~iLiv-dd~~---~~~~~l~~~l~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRILIC-EDDP---DIARLLNLMLEKGGFDSDM---V--------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---E--------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEEEE-cCCH---HHHHHHHHHHHHCCCeEEE---E--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 466655 3333 3466677788888877532 1 23445566667778999999654 3457778888
Q ss_pred HHHc
Q 004042 243 AKYL 246 (777)
Q Consensus 243 a~~~ 246 (777)
.++.
T Consensus 72 l~~~ 75 (140)
T 3grc_A 72 LRRD 75 (140)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 8763
No 384
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=30.80 E-value=1.6e+02 Score=23.69 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHHHHHHHcC
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSVAKYLG 247 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l~~a~~~g 247 (777)
....++..+++.|..+.. . .+....+..+++..+|+|++.... .+...++++.++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIE---A--------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEE---e--------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 455677777778877642 1 233456667777789999986543 45677888877653
No 385
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=30.64 E-value=1.1e+02 Score=25.83 Aligned_cols=81 Identities=5% Similarity=0.015 Sum_probs=0.0
Q ss_pred EEEEE-EeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC-------hh-HHH
Q 004042 167 VSVIF-VDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-------PS-LGF 237 (777)
Q Consensus 167 vaii~-~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-------~~-~~~ 237 (777)
|.|+| +........++.+.+.+++.|.++.....-... ..++ .+.|.|++.++ ++ .+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~~~l---------~~~d~iiig~pty~~g~~p~~~~~ 67 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----IDEL---------LNEDILILGCSAMTDEVLEESEFE 67 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----HHHH---------TTCSEEEEEECCBTTTBCCTTTHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----HHHH---------hhCCEEEEEcCccCCCCCChHHHH
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCcc
Q 004042 238 QVFSVAKYLGMMGNGYVWIATDWL 261 (777)
Q Consensus 238 ~~l~~a~~~gl~~~~~~~i~~~~~ 261 (777)
.+++..... +.+..+..+.+..|
T Consensus 68 ~fl~~l~~~-l~~k~~~~f~t~g~ 90 (138)
T 5nul_A 68 PFIEEISTK-ISGKKVALFGSYGW 90 (138)
T ss_dssp HHHHHHGGG-CTTCEEEEEEEESS
T ss_pred HHHHHHHhh-cCCCEEEEEEecCC
No 386
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=30.10 E-value=1.3e+02 Score=29.03 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=46.1
Q ss_pred CCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 163 ~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.-++|+++.. +++|.....+.+++.+++.|..+.... . . .+.......++.+...+.|.||+....
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-A--W--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE-C--T--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc-C--C--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3457898885 356777788899999999998876532 1 1 224555667888888889998886543
No 387
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=30.01 E-value=1.3e+02 Score=27.38 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=46.0
Q ss_pred cCCcEEEEEEEeCcc--c---cchHHHHHHHHhh---cceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecC
Q 004042 162 YGWNAVSVIFVDNEY--G---RNGVSALNDKLAE---RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVS 232 (777)
Q Consensus 162 ~~w~~vaii~~~~~~--g---~~~~~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~ 232 (777)
+.--+++||...|+- | ......+.+.+++ .|.++.....++.+ ...+...+++..+ .++|+||..+.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 444578888765431 1 2234567788887 79888877777644 7788888888765 37899998764
Q ss_pred h
Q 004042 233 P 233 (777)
Q Consensus 233 ~ 233 (777)
.
T Consensus 88 t 88 (189)
T 1jlj_A 88 T 88 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=29.84 E-value=20 Score=33.83 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=28.1
Q ss_pred CcEEEEcCCChhHHHHHHHhhccCCceEEec
Q 004042 96 DIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (777)
Q Consensus 96 ~v~aviGp~~s~~~~~va~~~~~~~iP~Is~ 126 (777)
+|..|+||.+|+=......+++.+++|+|+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999998888889999999999974
No 389
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.77 E-value=81 Score=30.60 Aligned_cols=78 Identities=5% Similarity=-0.168 Sum_probs=50.9
Q ss_pred cEEEEEEEe------CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHH
Q 004042 165 NAVSVIFVD------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (777)
Q Consensus 165 ~~vaii~~~------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 238 (777)
++|+++..+ ++|.....+.+++.+++.|..+.... .. .+...-...++.+...+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 467777643 45777788899999999998876432 11 112333556778888889999886543222 4
Q ss_pred HHHHHHHcCC
Q 004042 239 VFSVAKYLGM 248 (777)
Q Consensus 239 ~l~~a~~~gl 248 (777)
.++.+.+.++
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5666666665
No 390
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=29.33 E-value=1.9e+02 Score=24.50 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=44.9
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSV 242 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l~~ 242 (777)
.+|.++ +++. .....+++.+++.|..+.. . .+....+..+++..+|+|++.... .+...+++.
T Consensus 8 ~~ILiv-dd~~---~~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~ 72 (154)
T 3gt7_A 8 GEILIV-EDSP---TQAEHLKHILEETGYQTEH---V--------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRW 72 (154)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHTTTCEEEE---E--------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHH
T ss_pred CcEEEE-eCCH---HHHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 356555 3332 3566778888888876532 1 234556777777889999997653 456778888
Q ss_pred HHHcC
Q 004042 243 AKYLG 247 (777)
Q Consensus 243 a~~~g 247 (777)
+++..
T Consensus 73 lr~~~ 77 (154)
T 3gt7_A 73 LKGQP 77 (154)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 88764
No 391
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=29.16 E-value=1.4e+02 Score=30.42 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred CceEEecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCC-CCChhhHHHHHH
Q 004042 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-GVNTGYVMDLLV 217 (777)
Q Consensus 139 ~~~~r~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~d~~~~l~ 217 (777)
||-+...+.... .+.++++.. +++.||+....+. ..+.+.+.+++.|+++... .++... ..+...+...++
T Consensus 23 ~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 94 (368)
T 3qbe_A 23 PYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIWE 94 (368)
T ss_dssp CEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHHH
T ss_pred CceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHHH
Confidence 555666665433 344555543 8999998655443 3678889999999876432 233221 123456666766
Q ss_pred HHhcC---CCeEEEEecCh--hHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 218 KVALM---ESRVIVLHVSP--SLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 218 ~l~~~---~~~vIvl~~~~--~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.+++. +.+.||..+.+ -|+..++......|+ .++-|-|.
T Consensus 95 ~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 95 VLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 66653 46888887766 466667666555554 34445444
No 392
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=28.92 E-value=80 Score=28.07 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=42.9
Q ss_pred cEEEEEEEeCcc--cc---chHHHHHHHHhhc-----ceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecCh
Q 004042 165 NAVSVIFVDNEY--GR---NGVSALNDKLAER-----RCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (777)
Q Consensus 165 ~~vaii~~~~~~--g~---~~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~ 233 (777)
-+|+||...|.- |+ .....+.+.+++. |.++.....++.+ ...+...+++..+ .+.|+||..+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 478888754432 11 1123456666666 8988877777644 7788888888765 478999987643
No 393
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=28.91 E-value=43 Score=32.25 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHH-----hcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCe
Q 004042 151 QMTAVAEMVS-----YYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESR 225 (777)
Q Consensus 151 ~~~a~~~~l~-----~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~ 225 (777)
.++.+++.+. ...-++|.++..+. ....+.+.+++.|..+.....|.... ...+.......+.....|
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~--~~~~~~~~~~~l~~~~~d 187 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRA--PDYPAGELLARVRAERLN 187 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEEC--CCCCTTHHHHHHHHTTCC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeC--CCCCHHHHHHHHHhCCCC
Confidence 3577777664 34567888776443 34567788889998876655554321 111112223344445677
Q ss_pred EEEEecChhHHHHHHHHHHH
Q 004042 226 VIVLHVSPSLGFQVFSVAKY 245 (777)
Q Consensus 226 vIvl~~~~~~~~~~l~~a~~ 245 (777)
+|+ +.++..+..+++.+.+
T Consensus 188 ~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 188 GLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp EEE-CCSHHHHHHHHHHHGG
T ss_pred EEE-EcCHHHHHHHHHHhhH
Confidence 655 6778888888877653
No 394
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=28.75 E-value=29 Score=33.18 Aligned_cols=73 Identities=10% Similarity=-0.120 Sum_probs=49.3
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccc---ceeeecccccccceEEE
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVVV 568 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~dfs~p~~~~~~~~~ 568 (777)
|+.-+|...+.++.|.++++.+ +.-..++.++.+|.+|+.+..-....+.. ....--.++....+.++
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV 89 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVA---------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVII 89 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEE---------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEE
T ss_pred hHHHHHHHHHHHHhCCeEEEEE---------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEE
Confidence 5566788888888888866655 45778999999999999875332221111 01112357888889999
Q ss_pred EeccC
Q 004042 569 VPFRK 573 (777)
Q Consensus 569 v~~~~ 573 (777)
+|+..
T Consensus 90 ~P~~~ 94 (242)
T 3kn3_A 90 GNPSF 94 (242)
T ss_dssp ECTHH
T ss_pred EeCCC
Confidence 98865
No 395
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=27.73 E-value=3.2e+02 Score=27.83 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=46.2
Q ss_pred cCCcEEEEEEEe-CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh------h
Q 004042 162 YGWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------S 234 (777)
Q Consensus 162 ~~w~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~------~ 234 (777)
..-+++.++|.. .......++.+.+.+.+.|.++... .+. ..+......++. ..|.|++.+.. .
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~-~~~------~~~~~~~~~~l~--~~d~iiigsP~y~~~~~~ 324 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVY-CLH------EDDRSEIVKDIL--ESGAIALGAPTIYDEPYP 324 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEE-ETT------TSCHHHHHHHHH--TCSEEEEECCEETTEECT
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE-ECC------CCCHHHHHHHHH--HCCEEEEECccccccchH
Confidence 345688888843 3334456777888888778776432 222 223444555565 46677776542 5
Q ss_pred HHHHHHHHHHHcC
Q 004042 235 LGFQVFSVAKYLG 247 (777)
Q Consensus 235 ~~~~~l~~a~~~g 247 (777)
....++.......
T Consensus 325 ~~k~~ld~l~~~~ 337 (404)
T 2ohh_A 325 SVGDLLMYLRGLK 337 (404)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhcc
Confidence 6788887776533
No 396
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=27.67 E-value=1.7e+02 Score=28.84 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=50.2
Q ss_pred CCcEEEEEEEeCcccc----chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHH
Q 004042 163 GWNAVSVIFVDNEYGR----NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (777)
Q Consensus 163 ~w~~vaii~~~~~~g~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 238 (777)
..+++.+|+. ...|. .....+...+++.|+++....+-. ..+.....+++.+ +.|.|+.++.......
T Consensus 7 ~m~~~~vi~N-p~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~------~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~ 78 (304)
T 3s40_A 7 KFEKVLLIVN-PKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE------QGDATKYCQEFAS-KVDLIIVFGGDGTVFE 78 (304)
T ss_dssp SCSSEEEEEC-TTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS------TTHHHHHHHHHTT-TCSEEEEEECHHHHHH
T ss_pred CCCEEEEEEC-cccCCCchHHHHHHHHHHHHHcCCeEEEEEccC------cchHHHHHHHhhc-CCCEEEEEccchHHHH
Confidence 4568888873 22232 445678888888898876544332 3466666777654 7888888877777777
Q ss_pred HHHHHHH
Q 004042 239 VFSVAKY 245 (777)
Q Consensus 239 ~l~~a~~ 245 (777)
++..+..
T Consensus 79 v~~~l~~ 85 (304)
T 3s40_A 79 CTNGLAP 85 (304)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8877765
No 397
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=27.67 E-value=30 Score=34.87 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=19.2
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEE
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITM 75 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~ 75 (777)
.+++|+|..-. . ......+-.+++.+++. |.+|++..
T Consensus 33 ~~~~l~v~~~~---~----~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 33 AGKKLVVSTWG---L----NEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp ---CEEEEECC---T----THHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred CCCeEEEEEcc---C----cHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 34567774321 1 13344556667777663 56777764
No 398
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=27.50 E-value=86 Score=28.49 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEe
Q 004042 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (777)
Q Consensus 151 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~ 230 (777)
.++.+..+.++++.++|.++- |.....+..+.+-+.+.-.|+++.. ++ .++....+++-+..+.++++++
T Consensus 35 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~il~ 104 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVIID-DELAVDEFMKNIYTMAAPPGVKVKV---FG------VDAALKEWSQKTSVEEKVFLLF 104 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEEC-HHHHHCHHHHHHHHHTSCTTCCEEE---EC------HHHHHHHHHSBCSSCEEEEEEE
T ss_pred hhhhhheeccccCCCEEEEEC-ccccCCHHHHHHHHHhccCCCeEEE---EE------HHHHHHHHhCCccCCceEEEEE
Confidence 477888899999999998773 4444444555666666666877653 21 4455555555444567899999
Q ss_pred cChhHHHHHHH
Q 004042 231 VSPSLGFQVFS 241 (777)
Q Consensus 231 ~~~~~~~~~l~ 241 (777)
-++.++..+++
T Consensus 105 k~p~d~~~lve 115 (187)
T 3lfj_A 105 KNIDTCKRVMD 115 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999887754
No 399
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.48 E-value=2.2e+02 Score=24.97 Aligned_cols=95 Identities=7% Similarity=-0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeec--CCCCCCChhhHHHHHHHHh-cCCCeEEEE
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGI--PPESGVNTGYVMDLLVKVA-LMESRVIVL 229 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~~~~~d~~~~l~~l~-~~~~~vIvl 229 (777)
..+.+.+...+--..+..|. +..+......+.+.+.+.|+++...-.. ..+...+..|..-.+.-+. ....|.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 34555555555334444563 2222245567888899999988643211 1111123455443333332 245788888
Q ss_pred ecChhHHHHHHHHHHHc-CC
Q 004042 230 HVSPSLGFQVFSVAKYL-GM 248 (777)
Q Consensus 230 ~~~~~~~~~~l~~a~~~-gl 248 (777)
.....+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 87777888899999985 84
No 400
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.32 E-value=1.5e+02 Score=28.86 Aligned_cols=72 Identities=7% Similarity=-0.076 Sum_probs=49.1
Q ss_pred HHHHhcCCcEEEEEEEe--Ccccc-chHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 157 EMVSYYGWNAVSVIFVD--NEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 157 ~~l~~~~w~~vaii~~~--~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
+-|+.-+-+.|+++..+ +.|.. ...+.+++.+++.|..+..... . .+...-...++.+...+.|.||+....
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34455566789999864 45666 8899999999999998875432 1 224556677888888899999886544
No 401
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=27.24 E-value=51 Score=33.78 Aligned_cols=95 Identities=15% Similarity=0.022 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
+.+.++++.+|.+|+.+|+....++ ..+.+.+.++ . .+.+.. +.++ .+.+.....++.+++.++|+||..+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~~-v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHDE-VVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEECC-CCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEcc-eecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788888999999998554332 3344444443 1 122222 2223 34778888888899999999998877
Q ss_pred hh--HHHHHHHHHHHcCCCCCCeEEEEeCc
Q 004042 233 PS--LGFQVFSVAKYLGMMGNGYVWIATDW 260 (777)
Q Consensus 233 ~~--~~~~~l~~a~~~gl~~~~~~~i~~~~ 260 (777)
+. |+..++... .++ .++-|-|..
T Consensus 98 Gs~iD~aK~iA~~--~~~---P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAMT--TAL---PIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHH--HCC---CEEEEECSS
T ss_pred cHHHHHHHHHHhc--cCC---CEEEEcCCc
Confidence 64 455555442 233 445555544
No 402
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=27.23 E-value=1.2e+02 Score=29.39 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=52.7
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh-HHHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~l~ 241 (777)
+.|+++.. +++|.....+.+++.+++.|..+....... . .+...-...++.+...+.|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46788874 456777788889999999998876532101 1 1234445667788888899988865432 2234567
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776665
No 403
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=27.12 E-value=64 Score=32.41 Aligned_cols=60 Identities=5% Similarity=0.041 Sum_probs=45.7
Q ss_pred CCCCChhhhhhCCCCeEEeeCchHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhh
Q 004042 680 SPINGIESLRKSDDPIGYQEGSFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYV 750 (777)
Q Consensus 680 ~~i~s~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~ 750 (777)
.+|++++||+ |+||-+..+....+.++ ..+..+. .-...|.+.+|++ |-+|+.......+
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~~-alGa~pv----~m~~~Evy~ALq~----GvvDg~e~~~~~~ 203 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESYK-AFGATPT----PLPWGEVYGGLQT----NVIQGQENPTFFL 203 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHHH-HHTSEEE----ECCGGGHHHHHHT----TSCCEEEEEHHHH
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHHH-HcCCeee----ecCHHHHHHHHHc----CCcceEecCHHHH
Confidence 5899999999 99999887666677773 4554322 2357789999999 9999998766544
No 404
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=26.87 E-value=1.2e+02 Score=29.77 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCChhhhhhCC--CCeEEeeC------chHHHHHHhhhccccccccccCCHHHHHHHHhcCCCCCCceEEEecchhhH
Q 004042 681 PINGIESLRKSD--DPIGYQEG------SFAEYYLSQELNISKSRLVALRTPEDYAKALKDGPGKGGVAAVVDERPYVE 751 (777)
Q Consensus 681 ~i~s~~dl~~~~--~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~~~~ 751 (777)
.|+|++||.+.. .++|+..+ .....+. +..+.....+... +.-...+++++ |+.+++..-.+.-.
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l~-~~Ygl~~~~~~~~-d~g~~~~A~~~----~~~~v~~~wsp~~~ 201 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFK-KEYGFDFGTVRPM-QIGLVYDALNT----EKLDVALGYSTDGR 201 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHH-HHHCCCCSEEEEE-CGGGHHHHHHT----TSCSEEEEETTCHH
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHHHH-HHcCCCCcccccc-CHHHHHHHHHc----CCCeEEEEeCCCch
Confidence 799999998643 35777652 2223332 3344432223233 33367888999 99998888766543
No 405
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=26.86 E-value=65 Score=31.02 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=30.4
Q ss_pred CCCCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcCcEEEEc
Q 004042 26 SARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (777)
Q Consensus 26 ~~~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aviG 102 (777)
....++|+||+.... . .-+.-.+.++.+.. |+.++++...++ . +....+.+..+++.|+
T Consensus 24 ~~~~g~l~Ig~~~~~-------~-~~l~~~l~~f~~~~---P~i~v~i~~~~~----~---~~~~~l~~g~~Di~i~ 82 (290)
T 1twy_A 24 FVQASEITISGSTSV-------A-RIMDVLAEKYNQQH---PETYVAVQGVGS----T---AGISLLKKGVADIAMT 82 (290)
T ss_dssp ----CEEEEEECHHH-------H-HHHHHHHHHHHHHC---TTCEEEEEESCH----H---HHHHHHHTTSCSEEEE
T ss_pred cccCCCEEEecCcch-------H-HHHHHHHHHHHhhC---CCceEEEEecCc----H---HHHHHHhcCCCcEEEe
Confidence 344678999975332 1 23444556666543 677887764322 1 1233445556776665
No 406
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=26.75 E-value=1.2e+02 Score=31.08 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=54.0
Q ss_pred HHHHHHHhcCC---cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC---CeEE
Q 004042 154 AVAEMVSYYGW---NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME---SRVI 227 (777)
Q Consensus 154 a~~~~l~~~~w---~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~---~~vI 227 (777)
.+.++++.++. +++.+|+...... ..+.+.+++.|+.+..-..+.++ .+...+...++.+++.+ +|+|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDE--PTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSC--CBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCCEE
Confidence 35667777653 7787887543322 13666777777766443344444 45677888888888776 9999
Q ss_pred EEecChh--HHHHHHHHH
Q 004042 228 VLHVSPS--LGFQVFSVA 243 (777)
Q Consensus 228 vl~~~~~--~~~~~l~~a 243 (777)
|..+.+. |+..++...
T Consensus 114 IavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 114 VGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 9887764 555555443
No 407
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=26.56 E-value=60 Score=31.72 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=54.6
Q ss_pred cEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhH-HHHHHH
Q 004042 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (777)
Q Consensus 165 ~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~-~~~~l~ 241 (777)
.+|+++.. +++|.......+++.+++.|..+.....-.. .+...-...++.+...+.|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 57888885 3567778888999999999998775432211 12455667788887788999998754432 234566
Q ss_pred HHHHcCC
Q 004042 242 VAKYLGM 248 (777)
Q Consensus 242 ~a~~~gl 248 (777)
++. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 666 565
No 408
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=26.40 E-value=66 Score=31.14 Aligned_cols=71 Identities=13% Similarity=0.035 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHC-CCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEee-cccceee-ecccccccceEEEEe
Q 004042 494 CIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVT-NRTKIVD-FSQPYAASGLVVVVP 570 (777)
Q Consensus 494 ~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~r~~~~d-fs~p~~~~~~~~~v~ 570 (777)
...++..+.++. +.++++.. +.....+.+|.+|++||++....... +..+.-+ ...|+...+++++++
T Consensus 18 ~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv~ 88 (265)
T 4exl_A 18 VEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIVN 88 (265)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEEC
Confidence 345666777776 56654443 35778999999999999875432211 0011111 357888999999998
Q ss_pred ccC
Q 004042 571 FRK 573 (777)
Q Consensus 571 ~~~ 573 (777)
+..
T Consensus 89 ~~~ 91 (265)
T 4exl_A 89 KEV 91 (265)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 409
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.20 E-value=3.1e+02 Score=26.12 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=53.1
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEee-ecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh----hHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKS-GIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQV 239 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~ 239 (777)
.+|.+.....+.-.-+..-+...++..|+++..-. ..|+ . ..+..+++.++++|.+.+.. .....+
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~------e---~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPA------E---EVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCS------H---HHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH------H---HHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 46666655555555566777888899999886433 3332 2 34455555679999987642 467778
Q ss_pred HHHHHHcCCCCCCeEEEEe
Q 004042 240 FSVAKYLGMMGNGYVWIAT 258 (777)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~ 258 (777)
++++++.+.. -.++++.
T Consensus 195 i~~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 195 NDMLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHHHTTTCC--CCEEEES
T ss_pred HHHHHhcCCC--CcEEEEC
Confidence 8888887764 3345543
No 410
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=25.85 E-value=76 Score=28.14 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEe
Q 004042 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (777)
Q Consensus 151 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~ 230 (777)
+++....+.++++.++|.++- |.....+..+.+-+.+.-.|+++.. ++ .++....+++-+..+.++++++
T Consensus 15 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~ 84 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVVS-DDIAQDEMRKTLILSVAPSNVKASA---VS------VSKMAKAFHSPRYEGVTAMLLF 84 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEEC-HHHHHCHHHHHHHHTSSCTTSEEEE---EC------HHHHHHHHHCSTTTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhhCCCCCeEEE---EE------HHHHHHHHhcccCCCceEEEEE
Confidence 467778899999999998773 4443334455555555556877653 21 4556666666555678999999
Q ss_pred cChhHHHHHH
Q 004042 231 VSPSLGFQVF 240 (777)
Q Consensus 231 ~~~~~~~~~l 240 (777)
-++.++..++
T Consensus 85 k~p~d~~~lv 94 (163)
T 1ble_A 85 ENPSDIVSLI 94 (163)
T ss_dssp SSSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888664
No 411
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.83 E-value=2e+02 Score=23.64 Aligned_cols=57 Identities=9% Similarity=-0.021 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHHHHHHHcC
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSVAKYLG 247 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l~~a~~~g 247 (777)
....+...+++.|..+.. . .+....+..+.+..+|+|++.... .+...++++.++..
T Consensus 16 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRR---A--------ASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 456677778788877642 1 133445566666789999997553 35677888887653
No 412
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=25.71 E-value=2.3e+02 Score=27.44 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEe--
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH-- 230 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~-- 230 (777)
..+++....-|...+.+++ ++.|.....+.++..-+.-++.|.....+ .+++ ++...+..++|.|++.
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdfi-------id~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDFV-------VQPY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESCC-------CSHH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECccc-------cCHH--HHHHHHHcCCCEEEEecc
Confidence 4456667778999999886 55555555566665544456666543222 2222 4666777899999984
Q ss_pred -cChhHHHHHHHHHHHcCCC
Q 004042 231 -VSPSLGFQVFSVAKYLGMM 249 (777)
Q Consensus 231 -~~~~~~~~~l~~a~~~gl~ 249 (777)
....+...+++.+++.|+.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 3456788899999998874
No 413
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=25.61 E-value=2e+02 Score=27.54 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aviGp~~s~~~ 109 (777)
+||++.... ......-..|++.|+++.+-. .....+ .....+...+.+.+.+++.. ++.+|+.. +...+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIK------ISENHI-IAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCB------CCGGGE-EECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCC------CChhhe-eccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHHH
Confidence 577776543 222344567777777764321 110111 13345667777788888876 68899874 34444
Q ss_pred HHHHHhhccCC------ceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH
Q 004042 110 HIVSYVSNELQ------VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (777)
Q Consensus 110 ~~va~~~~~~~------iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~ 160 (777)
..+...+...+ +.++++...+..+.....|.+..+..+...+++..++++.
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 44444444443 3377665212223322235566666777778888877754
No 414
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=25.38 E-value=2.6e+02 Score=27.73 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=48.6
Q ss_pred HhcCCcEEEEEEE--eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 160 SYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 160 ~~~~w~~vaii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
+.-.-+.|+++.. +++|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....
T Consensus 54 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 54 KVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---W--NNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp HHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 3344568999985 3567778888999999999988765321 1 124455667888888889999986543
No 415
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=25.17 E-value=63 Score=34.19 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEEcc
Q 004042 48 AKIAIEEAVKDVNSNSSILHGTKLNITMQS 77 (777)
Q Consensus 48 ~~~a~~lAve~iN~~~gil~g~~i~~~~~D 77 (777)
....++-.+++.++.. ||++|++....
T Consensus 40 ~~~~~~~~~~~F~~~~---pgi~V~~~~~~ 66 (458)
T 3uor_A 40 EAEVVAELVADFEKQN---PTIHVDVQNIP 66 (458)
T ss_dssp HHHHHHHHHHHHHTTC---TTEEEEEEECC
T ss_pred cHHHHHHHHHHHHHHC---CCcEEEEEEcC
Confidence 3567788889999875 68889888763
No 416
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=25.10 E-value=52 Score=32.07 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=19.0
Q ss_pred CCceEEEEEEeeCCCcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEE
Q 004042 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITM 75 (777)
Q Consensus 28 ~~~~i~IG~l~~~s~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~ 75 (777)
..++|+|.+-.. ....++...++.++.. ||.+|++..
T Consensus 35 ~~~~i~i~GSss--------~~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 35 STNSVSISGSTS--------VGPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp --CEEEEEECTT--------THHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred CCCeEEEEEeCc--------HHHHHHHHHHHHHHHC---CCceEEEee
Confidence 446788765322 2334444445555443 678887764
No 417
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=25.06 E-value=5.1e+02 Score=26.20 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=46.3
Q ss_pred HHHhcCCcEEEEEEE-eCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC----
Q 004042 158 MVSYYGWNAVSVIFV-DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS---- 232 (777)
Q Consensus 158 ~l~~~~w~~vaii~~-~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~---- 232 (777)
+.+.....++.++|. ........++.+.+.+.+.|.++.... +. ..+......++.+ .|.|++.+.
T Consensus 245 ~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~-~~------~~~~~~~~~~~~~--~d~ii~g~p~y~~ 315 (398)
T 1ycg_A 245 WAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFK-LS------VSDRNDVIKEILD--ARAVLVGSPTINN 315 (398)
T ss_dssp HHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-GG------GSCHHHHHHHHHH--CSEEEEECCCBTT
T ss_pred HhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEE-CC------CCCHHHHHHHHHH--CCEEEEECCccCc
Confidence 334433467777773 233333456667777776676554322 21 2334444455543 455555442
Q ss_pred --hhHHHHHHHHHHHcCCCCCCeEEEE
Q 004042 233 --PSLGFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 233 --~~~~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
+..+..++..+....+.+.....+.
T Consensus 316 ~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 316 DILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp BCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred cchHHHHHHHHHHhccccCCCEEEEEE
Confidence 2456777777665444433333343
No 418
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=24.58 E-value=5.4e+02 Score=25.69 Aligned_cols=163 Identities=10% Similarity=0.065 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHh-cCcEEEEc--CCCh-hHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHH
Q 004042 83 FIGMVEALRFME-TDIVAIIG--PQCS-TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (777)
Q Consensus 83 ~~a~~~a~~l~~-~~v~aviG--p~~s-~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~ 158 (777)
..+...+.+.+. .|+.+++. ...+ .....+..++...++.+|.|.+.. +-+ |.-.+...........+..
T Consensus 90 ~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc~G--ii~---p~~~~ig~~~~~~~a~~~~- 163 (334)
T 3mwd_B 90 RSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVG--GIK---PGCFKIGNTGGMLDNILAS- 163 (334)
T ss_dssp TTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCC--EEE---TTTEECTTTTCSHHHHHHT-
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCCcc--ccC---cchhhcccccccccccccc-
Confidence 344456666666 56644443 3223 345667788889999999876643 111 1001111000111111111
Q ss_pred HHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEe--cChhH
Q 004042 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLH--VSPSL 235 (777)
Q Consensus 159 l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~--~~~~~ 235 (777)
..+.--+|++|.+... ....+.+.+.+.|+-+.....+-.+ ...+.++.+.|+.+.+ .++++|+++ ..+..
T Consensus 164 -~~~~~G~vgivSqSG~----l~~~i~~~~~~~g~G~S~~VsiGn~-~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~ 237 (334)
T 3mwd_B 164 -KLYRPGSVAYVSRSGG----MSNELNNIISRTTDGVYEGVAIGGD-RYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE 237 (334)
T ss_dssp -TTTSCCSEEEEESCHH----HHHHHHHHHHHHSSCEEEEEECCSS-SSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSH
T ss_pred -cCCCCCCEEEEeCchH----HHHHHHHHHHhcCCCeEEEEECCCC-ccCCCCHHHHHHHHhcCCCCCEEEEEEecCChH
Confidence 1233347999976554 3444555666666555444444321 0135678888888765 478999998 33333
Q ss_pred HHHHHHHHHHcCCCCCCeEEEE
Q 004042 236 GFQVFSVAKYLGMMGNGYVWIA 257 (777)
Q Consensus 236 ~~~~l~~a~~~gl~~~~~~~i~ 257 (777)
-..+++.+++.....|-..|..
T Consensus 238 e~~~~~~~r~~~~~KPVV~~ka 259 (334)
T 3mwd_B 238 EYKICRGIKEGRLTKPIVCWCI 259 (334)
T ss_dssp HHHHHHHHHTTSCCSCEEEEEE
T ss_pred HHHHHHHHHhhcCCCCEEEEEc
Confidence 3778888887555444344443
No 419
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=24.57 E-value=2.2e+02 Score=23.26 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHHHHHHHHHHc
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYL 246 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~l~~a~~~ 246 (777)
....+...+++.|..+.. . .+....+..+....+|+|+ ....+...+++++++.
T Consensus 30 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 30 LGGEIEKGLNVKGFMADV---T--------ESLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEE---e--------CCHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 455666677777766541 1 1223444455556788887 4444556677777665
No 420
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=24.55 E-value=92 Score=27.76 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEE
Q 004042 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (777)
Q Consensus 151 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl 229 (777)
.++....+.++++.++|.++- |.....+..+.+-+.+.-. |+++.. ++ .++....+++-+ .+.+++++
T Consensus 19 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~~gvk~~i---~s------ve~ai~~~~~~~-~~~~v~il 87 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVVD-DVVANDDIQQKLMGITAETYGFGIRF---FT------IEKTINVIGKAA-PHQKIFLI 87 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEEC-HHHHHSGGGGHHHHHHHHHHTCEEEE---EC------HHHHHHHGGGCC-TTCCEEEE
T ss_pred chhhhheeccccCCCEEEEEc-ccccCCHHHHHHHHhcCCCCCCeEEE---EE------HHHHHHHHhccc-CCceEEEE
Confidence 477888899999999999774 4444444555555556656 887753 22 344555554443 56789999
Q ss_pred ecChhHHHHHHH
Q 004042 230 HVSPSLGFQVFS 241 (777)
Q Consensus 230 ~~~~~~~~~~l~ 241 (777)
+-++.++..+++
T Consensus 88 ~k~p~d~~~lve 99 (168)
T 3eye_A 88 CRTPQTVRKLVE 99 (168)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999887754
No 421
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.29 E-value=2.2e+02 Score=27.34 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred EEEEEEEeCccccchHHHHHHH--------Hhhc-ceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh---
Q 004042 166 AVSVIFVDNEYGRNGVSALNDK--------LAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--- 233 (777)
Q Consensus 166 ~vaii~~~~~~g~~~~~~~~~~--------~~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--- 233 (777)
+|.+-....+.-.-+..-+... ++.. |+++..-.. .......+..+++.++|+|.+.+..
T Consensus 122 ~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--------~vp~e~iv~aa~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 122 VVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--------QVANEDFIKKAVELEADVLLVSQTVTQK 193 (262)
T ss_dssp EEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--------SBCHHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred EEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--------CCCHHHHHHHHHHcCCCEEEEEeecCCc
Confidence 4433333333333445556656 8888 999874322 2234566777777899999997643
Q ss_pred ----hHHHHHHHHHHHcCCCCCCeEEEEeC
Q 004042 234 ----SLGFQVFSVAKYLGMMGNGYVWIATD 259 (777)
Q Consensus 234 ----~~~~~~l~~a~~~gl~~~~~~~i~~~ 259 (777)
.....+++++++.|+...-.++++..
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 34666788888888754344555543
No 422
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=24.16 E-value=3.6e+02 Score=23.56 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=39.7
Q ss_pred eeeHHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeecccceeeecccccccceEEEEec
Q 004042 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (777)
Q Consensus 492 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~dfs~p~~~~~~~~~v~~ 571 (777)
.+..+++..+.++.+.+ +++.. ++...+.+.+.+|..|+++.. .......+ -+.++....+.++++.
T Consensus 15 ~~l~~~l~~f~~~~~v~--l~l~~-------~~~~~~~~~l~~g~d~~~i~~---~~~~~~~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSDYL--VNIAV-------DDQDHTVEWLRGGRVLAAVTA---HDKPVQGC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSSCE--EEEEE-------CCSSCHHHHHHTTSCSEEEES---CCSCCTTC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcCeE--EEEEe-------CCcHhHHHHHhcCcceEEEec---CCCCCCCc-eEEEccceEEEEEECh
Confidence 45677889998888655 55544 345678899999955544431 11112222 2356666677666644
No 423
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=24.11 E-value=1.7e+02 Score=30.74 Aligned_cols=86 Identities=21% Similarity=0.111 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 153 ~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
..++.-.... ..-+.+++ |..|.....+.++..-+.-.+.|.....+ .+.+ ++.+.+..++|+|++.+.
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-------~d~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-------IDPY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-------CSHH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-------CCHH--HHHHHHHcCCCEEEEEcc
Confidence 3444444544 67777776 55566666666666545556666544322 2334 467789999999999776
Q ss_pred h---hHHHHHHHHHHHcCCC
Q 004042 233 P---SLGFQVFSVAKYLGMM 249 (777)
Q Consensus 233 ~---~~~~~~l~~a~~~gl~ 249 (777)
. .+...+++.++++||.
T Consensus 140 ~l~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 4 5788999999999984
No 424
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.07 E-value=2e+02 Score=28.67 Aligned_cols=51 Identities=10% Similarity=0.192 Sum_probs=39.6
Q ss_pred EccCCCChHHHHH-HHHHHHhc-CcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 75 MQSSNCSGFIGMV-EALRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 75 ~~D~~~~~~~a~~-~a~~l~~~-~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
..|+=|...+--+ ++.+|..+ .+..|||+..|+.+..+.+++...+.|..-
T Consensus 204 ~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~ 256 (328)
T 3szu_A 204 RKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFL 256 (328)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEE
Confidence 3688886655544 45555555 888999999999999999999999987554
No 425
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=23.70 E-value=73 Score=29.77 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeE
Q 004042 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (777)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 544 (777)
-++++.+.++.|.++++.+ ++...++..+. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3567777777788865543 45677888888 8999987643
No 426
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.63 E-value=2.4e+02 Score=21.82 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHHHHHHHcC
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVFSVAKYLG 247 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l~~a~~~g 247 (777)
..+.+...+++.|..+.. . .+....+..++...+++|++.... .+...++++.++..
T Consensus 13 ~~~~l~~~l~~~g~~v~~---~--------~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 13 AATVVCEMLTAAGFKVIW---L--------VDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCcEEEE---e--------cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 456677778888877642 1 122334444455578999987543 35677888888764
No 427
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=23.62 E-value=1e+02 Score=30.19 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHH---HH-CCCeecE--EEEecCCCCCCCChhHHHHHHhc-C-ceeEEEeeEEEeecc---cceeeecccccccc
Q 004042 496 DVFTAAV---NL-LPYAVPY--QFVAFGDGHKNPSYTQLVDSITT-G-VFDAVVGDITIVTNR---TKIVDFSQPYAASG 564 (777)
Q Consensus 496 dl~~~l~---~~-l~f~~~~--~~~~~~~~~~~~~~~~~~~~l~~-g-~~Di~~~~~~~t~~r---~~~~dfs~p~~~~~ 564 (777)
++++.+. ++ -|.++++ .+ +.-..++..+.+ | .+|+.+.+-....++ ....+...||....
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~---------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 91 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA---------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNE 91 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECC
T ss_pred HHHHHHHHHHHhCCCceEEEEeec---------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceeccccc
Confidence 5677776 66 6888665 33 345678888887 5 599976532111111 11224556777778
Q ss_pred eEEEEeccC
Q 004042 565 LVVVVPFRK 573 (777)
Q Consensus 565 ~~~~v~~~~ 573 (777)
+++++++..
T Consensus 92 ~vi~~~~~~ 100 (296)
T 3cg1_A 92 IVIAFTDKS 100 (296)
T ss_dssp EEEEECTTS
T ss_pred EEEEEcCCC
Confidence 888887654
No 428
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=23.22 E-value=1.6e+02 Score=26.38 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=42.0
Q ss_pred cEEEEEEEeCcc--c---cchHHHHHHHHh---hcceEEEEeeecCCCCCCChhhHHHHHHHHhcC-CCeEEEEecC
Q 004042 165 NAVSVIFVDNEY--G---RNGVSALNDKLA---ERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVS 232 (777)
Q Consensus 165 ~~vaii~~~~~~--g---~~~~~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 232 (777)
-+++||...|+- | ......+.+.++ +.|.++ ....++.+ ...+...+++..+. +.|+||..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 378888754431 1 122345777666 889988 55566533 77888888887763 7899998764
No 429
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.94 E-value=1e+02 Score=29.98 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=45.8
Q ss_pred cEEEEEE-EeCccccchHHHHHHHHhhcce---EEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecC
Q 004042 165 NAVSVIF-VDNEYGRNGVSALNDKLAERRC---RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (777)
Q Consensus 165 ~~vaii~-~~~~~g~~~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 232 (777)
++|+++. .+++|..+..+.+++.+++.|. .+..... +.. .+.......++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~--~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSE--GDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECT--TCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCC--CCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5688883 2456777888999999999998 6443211 111 23556677889999999999998753
No 430
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=22.94 E-value=1.9e+02 Score=26.45 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=41.9
Q ss_pred cEEEEEEEeCccc-----cchHHHHHHHHhhcceE--EEEeeecCCCCCCChhhHHHHHHHHhcC-CCeEEEEecCh
Q 004042 165 NAVSVIFVDNEYG-----RNGVSALNDKLAERRCR--ISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHVSP 233 (777)
Q Consensus 165 ~~vaii~~~~~~g-----~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~~ 233 (777)
-+++||...|+-. ......+.+.+++.|.+ +.....++.+ ...+...++++.+. +.|+||..+..
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd----~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE----QAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4788887544421 12345678888888876 4544455533 67788888887664 68999986543
No 431
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=22.86 E-value=4.6e+02 Score=24.64 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=61.0
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhc---CcEEEEcCCChhH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET---DIVAIIGPQCSTV 108 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~---~v~aviGp~~s~~ 108 (777)
+|+++.... ......-..|++.|+++. |.++. +.....+...+.+.+.++++. ++.+|+.. +...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChHH
Confidence 577776543 222344567777777653 23333 233444667777777888765 68899874 3444
Q ss_pred HHHHHHhhccCC--ce----EEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHH
Q 004042 109 AHIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (777)
Q Consensus 109 ~~~va~~~~~~~--iP----~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l 159 (777)
+..+...+...+ +| ++++.... +.....|.+..+..+...++...++++
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 444555555544 33 45432211 111112344444555666666666654
No 432
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=22.67 E-value=4e+02 Score=25.29 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHhcCcEEEEcCCChhHHHHHHHhhccCCceEEe
Q 004042 89 ALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (777)
Q Consensus 89 a~~l~~~~v~aviGp~~s~~~~~va~~~~~~~iP~Is 125 (777)
+..|.++|+.+|+-+-++..+..+..+-+..++|+|.
T Consensus 55 ~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 55 LDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3444455899888744444433556666778999996
No 433
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=22.63 E-value=3e+02 Score=26.94 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=47.8
Q ss_pred cEEEEcCCChhHHHHHHHhhccCCceEEecccCCCCCCCCCCCceEEec---C------CchHHHHHHHHHHHhcC----
Q 004042 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTT---Q------SDSYQMTAVAEMVSYYG---- 163 (777)
Q Consensus 97 v~aviGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~l~~~~~~~~~r~~---p------~~~~~~~a~~~~l~~~~---- 163 (777)
+.-++||...+....++.++...+.=.+......+..+ ..++.|+. + +....-+++..+.+.++
T Consensus 12 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~ 88 (292)
T 3lou_A 12 VLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---ARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWA 88 (292)
T ss_dssp EEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---TEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---CceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEE
Confidence 67788999999999999999999888776544322122 13445553 2 12334455555555543
Q ss_pred ------CcEEEEEEEeC
Q 004042 164 ------WNAVSVIFVDN 174 (777)
Q Consensus 164 ------w~~vaii~~~~ 174 (777)
-+|++++.+..
T Consensus 89 l~~~~~~~ri~vl~Sg~ 105 (292)
T 3lou_A 89 IHDVAARPKVLIMVSKL 105 (292)
T ss_dssp EEETTSCCEEEEEECSC
T ss_pred eeccCCCCEEEEEEcCC
Confidence 25899888655
No 434
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.13 E-value=1.4e+02 Score=28.72 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=46.5
Q ss_pred CCcEEEEEEEe-CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh
Q 004042 163 GWNAVSVIFVD-NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (777)
Q Consensus 163 ~w~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 233 (777)
.-.+|+++..+ ++|.....+.+++.+++.|..+.... .. .+...-...++.+...+.|.||+....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~----~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS-SE----ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE-CT----TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe-CC----CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34578888764 55677778889999999998876532 11 124455667888888889999886543
No 435
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.11 E-value=1.9e+02 Score=23.76 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=43.8
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhh-cceEEEEeeecCCCCCCChhhHHHHHHHHhc-CCCeEEEEecC---hhHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVS---PSLGFQV 239 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~---~~~~~~~ 239 (777)
.+|.++ +++. .....++..+++ .|..+.. ..+....+..+++ ..+|+|++... ..+...+
T Consensus 5 ~~iliv-dd~~---~~~~~l~~~L~~~~~~~v~~-----------~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~ 69 (140)
T 3lua_A 5 GTVLLI-DYFE---YEREKTKIIFDNIGEYDFIE-----------VENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEV 69 (140)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHHHCCCEEEE-----------ECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHH
T ss_pred CeEEEE-eCCH---HHHHHHHHHHHhccCccEEE-----------ECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH
Confidence 355554 3333 245667777877 7877652 2244566777777 88999999765 3467778
Q ss_pred HHHHHH
Q 004042 240 FSVAKY 245 (777)
Q Consensus 240 l~~a~~ 245 (777)
+++.++
T Consensus 70 ~~~l~~ 75 (140)
T 3lua_A 70 LSAIRN 75 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888887
No 436
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.42 E-value=5.8e+02 Score=24.94 Aligned_cols=115 Identities=13% Similarity=0.013 Sum_probs=68.3
Q ss_pred EEEEEeeCC-CcchhhHHHHHHHHHHHHhccCCCCCCCEEEEEEccCCCChHHHHHHHHHHHhcC-cEEEEcCCChhHHH
Q 004042 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQCSTVAH 110 (777)
Q Consensus 33 ~IG~l~~~s-~~~g~~~~~a~~lAve~iN~~~gil~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~-v~aviGp~~s~~~~ 110 (777)
+||++.... ......-..|++.|+++.+ .. .+......+...+.+.+.+++..+ +.+|+.. +...+.
T Consensus 176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g--------~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~~A~ 244 (333)
T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIYG--------AE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPRLMA 244 (333)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTT--------CE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHHHHH
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHCC--------CC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHH
Confidence 678777653 2233455777777777642 22 222214456777888888888764 7888874 344444
Q ss_pred HHHHhhccCC------ceEEecccCCCCCCCCCCCceEEecCCchHHHHHHHHHHH
Q 004042 111 IVSYVSNELQ------VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (777)
Q Consensus 111 ~va~~~~~~~------iP~Is~~a~~~~l~~~~~~~~~r~~p~~~~~~~a~~~~l~ 160 (777)
.+...+...+ +.++++... .+..-..|.+..+..+...+++..++++.
T Consensus 245 g~~~al~~~G~~vP~disvig~D~~--~~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 245 GVMRAFTRLNVRVPHDVVIGGYDDP--EWYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEESCC--GGGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCh--HHHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 4445554443 346665332 23332345666777778888888888754
No 437
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=20.92 E-value=2.3e+02 Score=27.97 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=47.4
Q ss_pred EEEEEEEeCc----cccchHHHHHHHHhh-------cceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChh
Q 004042 166 AVSVIFVDNE----YGRNGVSALNDKLAE-------RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (777)
Q Consensus 166 ~vaii~~~~~----~g~~~~~~~~~~~~~-------~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~ 234 (777)
+|+++.+... ++....+.++..+++ .|.++..... +.. .+.......++++.+.+.+.||......
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~-d~~--~~~~~~~~~~~~l~~~~v~~iig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEY-DDA--CDPKQAVAVANKIVNDGIKYVIGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEE-ECT--TCHHHHHHHHHHHHHTTCCEEECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCC--CCHHHHHHHHHHHHhCCCCEEEcCCCcH
Confidence 6778876432 455666777776666 4554432221 111 2244555677777777888887655555
Q ss_pred HHHHHHHHHHHcCC
Q 004042 235 LGFQVFSVAKYLGM 248 (777)
Q Consensus 235 ~~~~~l~~a~~~gl 248 (777)
....+...+.+.++
T Consensus 81 ~~~~~~~~~~~~~i 94 (346)
T 1usg_A 81 STQPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC
Confidence 55566667766665
No 438
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=20.87 E-value=58 Score=32.61 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCeecEEEEecCCCCCCCChhHHHHHHhcCceeEEEeeEEEeeccccee-eecccccccceEEEEeccC
Q 004042 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIV-DFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 495 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~-dfs~p~~~~~~~~~v~~~~ 573 (777)
.++++.+.+.-+.++ .+.. +.-...+.++.+|++||++....++.+..+.. -...|+....++++++.+.
T Consensus 17 ~~~~~~f~~~p~v~i--~v~~-------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 17 AKWADTYQKETGNKV--NYQG-------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHHHCCEE--EEEE-------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHHhcCCceE--EEec-------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCC
Confidence 345555555334554 4333 45778899999999999987666655432100 1346889999999998765
No 439
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.86 E-value=1.2e+02 Score=30.53 Aligned_cols=77 Identities=8% Similarity=0.057 Sum_probs=46.5
Q ss_pred cEEEEEEEe-------CccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecChhHHH
Q 004042 165 NAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (777)
Q Consensus 165 ~~vaii~~~-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~ 237 (777)
+.|+++..+ ++|.....+.+++.++ |..+.....- .. ........++.+...+.|.||+...... .
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~-~~---~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~ 141 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPAS-PA---SSVDHVSAQQLVNNAAVDGVVIYSVAKG-D 141 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECC-CC---TTCCHHHHHHHHHTCCCSCEEEESCCTT-C
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcC-CC---ccHHHHHHHHHHHhCCCCEEEEecCCCC-h
Confidence 568888754 3455566777777776 6555433222 11 1123566788888888998888755322 2
Q ss_pred HHHHHHHHcCC
Q 004042 238 QVFSVAKYLGM 248 (777)
Q Consensus 238 ~~l~~a~~~gl 248 (777)
..++.+.+.++
T Consensus 142 ~~~~~l~~~~i 152 (366)
T 3h5t_A 142 PHIDAIRARGL 152 (366)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 35556665565
No 440
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=20.79 E-value=2.2e+02 Score=25.27 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhh-cceEEEEeeecCCCCCCChhhHHHHHHHHhc---
Q 004042 146 QSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVAL--- 221 (777)
Q Consensus 146 p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~--- 221 (777)
+.-..++..+++.++..+..--.|+.|...- ..+..+...+. ....+.....+.+ ..+....++.+.+
T Consensus 27 ~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~R---a~qTa~~l~~~~~~~~~~~~~~L~~-----~~~~~~~~~~l~~~~~ 98 (172)
T 3f2i_A 27 QEGKQKTEKVAYRLVKLGRQFDLIVTSPLIR---ARQTAEILLASGLSCQLEESNHLAP-----NGNIFNWLDYWLKPKN 98 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECSSHH---HHHHHHHHHHTTSCSCEEECGGGST-----TCCHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECChHH---HHHHHHHHHhcCCCCCeEECcccCC-----ccCHHHHHHHHHHhcc
Confidence 3456688999999887654333334433332 22233333333 2223433333322 3455555555542
Q ss_pred -CCCeEEEEecChhHHHHHHHHHHHc
Q 004042 222 -MESRVIVLHVSPSLGFQVFSVAKYL 246 (777)
Q Consensus 222 -~~~~vIvl~~~~~~~~~~l~~a~~~ 246 (777)
.+.+.++++++.+....++..+-..
T Consensus 99 ~~~~~~vllVgH~P~l~~l~~~L~~~ 124 (172)
T 3f2i_A 99 FPENAQIAIVGHEPCLSNWTEILLWG 124 (172)
T ss_dssp CCTTCEEEEEECTTHHHHHHHHHHHS
T ss_pred CCCCCEEEEEeCChHHHHHHHHHhcC
Confidence 5677888999999888888877653
No 441
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.74 E-value=3.2e+02 Score=27.48 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=63.9
Q ss_pred ecCCchHHHHHHHHHHHhcCCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC
Q 004042 144 TTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME 223 (777)
Q Consensus 144 ~~p~~~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~ 223 (777)
..|+....++.+.++++..+.++|.|-++.+. ..+.+++.+.+.+++++ .+++. ..++....-+.
T Consensus 260 ClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv---~~~pe--------~a~ID~~I~~~ 324 (362)
T 3zy2_A 260 CSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAH---RQEPD--------DMYTSLAIMGR 324 (362)
T ss_dssp HSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEE---CCSSC--------CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEE---EeCCc--------hhHHHHHHHHh
Confidence 35888888999999999999999998774332 47888888887777764 23322 34455555567
Q ss_pred CeEEEEecChhHHHHHHHHHHHcCC
Q 004042 224 SRVIVLHVSPSLGFQVFSVAKYLGM 248 (777)
Q Consensus 224 ~~vIvl~~~~~~~~~~l~~a~~~gl 248 (777)
++.+|-.+...-...+.++=.-.|+
T Consensus 325 A~~FIGN~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 325 ADLFVGNCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHSSS
T ss_pred CCEeecCccccccHHHHHHHHhcCC
Confidence 8888887777767766666666674
No 442
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=20.72 E-value=32 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.2
Q ss_pred hHHHHHHHHhcCCCeEEEEe
Q 004042 211 YVMDLLVKVALMESRVIVLH 230 (777)
Q Consensus 211 d~~~~l~~l~~~~~~vIvl~ 230 (777)
+..+.++.+.+.+.|+++..
T Consensus 167 ~~~~~~~~l~~G~vDa~~~~ 186 (268)
T 3qax_A 167 STLEVIMEVRYGKSPVAVLE 186 (268)
T ss_dssp CHHHHHHHHHTTSSSEEEEC
T ss_pred CHHHHHHHHHcCCCCEEEec
Confidence 45567888888889988764
No 443
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.65 E-value=2.1e+02 Score=23.43 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh-------hHHHHHHHHHHHcC
Q 004042 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-------SLGFQVFSVAKYLG 247 (777)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-------~~~~~~l~~a~~~g 247 (777)
....++..+++.|..+.. . .+....+..+++..+|+|++.... .+...++++.++..
T Consensus 15 ~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 15 VLTAVQLLLKNHFSKVIT---L--------SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHTTTSSEEEE---E--------CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcEEEE---e--------CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 566777888888877652 1 123445555566679999997653 35667777777653
No 444
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=20.55 E-value=47 Score=33.85 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=37.2
Q ss_pred CChhHHHHHHhcCceeEEEeeEEEeecccce---eeecccccccceEEEEeccC
Q 004042 523 PSYTQLVDSITTGVFDAVVGDITIVTNRTKI---VDFSQPYAASGLVVVVPFRK 573 (777)
Q Consensus 523 ~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~---~dfs~p~~~~~~~~~v~~~~ 573 (777)
+.-.+.+.++.+|++||++....++.+..+. + ...|+...++.++++.+.
T Consensus 62 ~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 62 TGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQVNYNLPG 114 (350)
T ss_dssp CCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEEEEECCTT
T ss_pred CCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEEEEEeCCc
Confidence 3467889999999999998776666543211 1 346888899999998765
No 445
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.45 E-value=2.7e+02 Score=22.56 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred cEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCC-CeEEEEecC--hhHHHHHHH
Q 004042 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS--PSLGFQVFS 241 (777)
Q Consensus 165 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~--~~~~~~~l~ 241 (777)
.+|.++ +++. .....++..+++.|..+... .+....+..+.... +|+|++... ..+...+++
T Consensus 8 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 72 (136)
T 3hdv_A 8 PLVLVV-DDNA---VNREALILYLKSRGIDAVGA-----------DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIR 72 (136)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHHTTCCEEEE-----------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHH
T ss_pred CeEEEE-CCCH---HHHHHHHHHHHHcCceEEEe-----------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHH
Confidence 355544 3332 24566777777778776431 12233444555455 899988654 345677888
Q ss_pred HHHHcC
Q 004042 242 VAKYLG 247 (777)
Q Consensus 242 ~a~~~g 247 (777)
++++.+
T Consensus 73 ~l~~~~ 78 (136)
T 3hdv_A 73 TIRASE 78 (136)
T ss_dssp HHHTST
T ss_pred HHHhcC
Confidence 888764
No 446
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.23 E-value=3.4e+02 Score=21.73 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=43.3
Q ss_pred CCcEEEEEEEeCccccchHHHHHHHHhhcceEEEEeeecCCCCCCChhhHHHHHHHHhcCCCeEEEEecCh--hHHHHHH
Q 004042 163 GWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLGFQVF 240 (777)
Q Consensus 163 ~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~l 240 (777)
.-.+|.++- ++. .....++..+++.|..+.. . .+....+..+++..+|+|++.... .+...++
T Consensus 6 ~~~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~ 70 (130)
T 3eod_A 6 VGKQILIVE-DEQ---VFRSLLDSWFSSLGATTVL---A--------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 (130)
T ss_dssp TTCEEEEEC-SCH---HHHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHTTCCCSEEEECCC-----CHHHH
T ss_pred CCCeEEEEe-CCH---HHHHHHHHHHHhCCceEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHH
Confidence 345666653 332 2456677788888877542 1 233456667777789999997553 3456777
Q ss_pred HHHHHcC
Q 004042 241 SVAKYLG 247 (777)
Q Consensus 241 ~~a~~~g 247 (777)
++.++.+
T Consensus 71 ~~l~~~~ 77 (130)
T 3eod_A 71 EHIRNRG 77 (130)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8877754
Done!