Query 004043
Match_columns 777
No_of_seqs 311 out of 910
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 2.1E-55 7.3E-60 463.4 21.6 241 195-444 8-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 5.8E-52 2E-56 442.4 24.6 248 178-427 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 3.6E-47 1.2E-51 394.4 17.3 207 192-421 13-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 1E-42 3.4E-47 358.9 11.1 192 210-430 12-213 (224)
5 2rg8_A Programmed cell death p 100.0 5.1E-32 1.7E-36 266.7 14.3 156 604-761 1-156 (165)
6 2ion_A PDCD4, programmed cell 100.0 9.4E-32 3.2E-36 261.4 11.1 138 607-747 3-141 (152)
7 2nsz_A Programmed cell death p 100.0 1.2E-30 4.2E-35 247.1 11.4 124 608-731 2-126 (129)
8 1ug3_A EIF4GI, eukaryotic prot 99.9 1.8E-28 6.2E-33 267.4 9.6 158 605-762 3-161 (339)
9 2zu6_B Programmed cell death p 99.9 7.1E-28 2.4E-32 258.8 12.4 137 606-747 159-296 (307)
10 3eiq_C Programmed cell death p 99.9 6.1E-27 2.1E-31 255.9 13.0 135 608-747 212-347 (358)
11 3eiq_C Programmed cell death p 99.9 4.4E-27 1.5E-31 256.9 10.0 149 604-754 45-193 (358)
12 3l6a_A Eukaryotic translation 99.9 3.3E-26 1.1E-30 251.5 14.6 154 607-764 6-160 (364)
13 2zu6_B Programmed cell death p 99.9 9.6E-27 3.3E-31 250.1 9.5 144 611-756 1-144 (307)
14 1uw4_B UPF2, regulator of nons 99.7 7E-16 2.4E-20 160.1 21.6 217 199-448 5-244 (248)
15 1h2v_C 80 kDa nuclear CAP bind 98.9 2.2E-08 7.4E-13 119.5 17.2 197 193-427 3-227 (771)
16 4gmj_A CCR4-NOT transcription 95.3 0.27 9.4E-06 50.2 14.4 191 195-421 4-202 (229)
17 4b89_A General negative regula 94.9 0.16 5.5E-06 52.4 11.4 194 193-421 29-225 (249)
18 1rf8_B Eukaryotic initiation f 85.6 0.51 1.7E-05 42.0 3.2 24 63-86 60-84 (100)
19 3u0r_A Apoptosis inhibitor 5; 83.5 20 0.00069 40.5 15.6 161 196-380 176-360 (507)
20 3hxi_C Eukaryotic translation 81.5 0.49 1.7E-05 30.2 1.0 17 61-77 2-18 (21)
21 3pev_B Nucleoporin GLE1; RECA, 71.6 90 0.0031 32.9 15.7 172 197-384 43-247 (297)
22 4g26_A Pentatricopeptide repea 45.3 65 0.0022 36.0 9.6 69 616-684 29-106 (501)
23 4b8b_A General negative regula 34.7 5.8E+02 0.02 29.4 15.0 89 610-698 445-543 (603)
24 4fu3_A Regulation of nuclear P 31.4 1.3E+02 0.0044 27.2 7.7 125 605-735 2-129 (135)
25 4g26_A Pentatricopeptide repea 30.4 71 0.0024 35.7 6.8 83 615-698 107-190 (501)
26 3rjo_A Endoplasmic reticulum a 28.4 1.9E+02 0.0064 31.3 9.6 134 615-755 253-390 (419)
27 2qk2_A LP04448P; mini spindles 28.1 3.7E+02 0.013 25.9 11.1 83 630-720 75-163 (242)
28 1juq_A ADP-ribosylation factor 28.0 1.1E+02 0.0038 29.4 6.8 104 326-444 32-143 (171)
29 1yoz_A Hypothetical protein AF 25.1 40 0.0014 29.9 2.7 83 627-716 21-111 (116)
30 3l39_A Putative PHOU-like phos 24.1 5.2E+02 0.018 25.4 11.6 81 614-702 40-123 (227)
31 3us6_A Histidine-containing ph 22.8 2E+02 0.007 26.9 7.5 69 608-676 2-83 (153)
32 1paq_A Translation initiation 20.3 5.8E+02 0.02 24.5 10.7 122 610-735 20-157 (189)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=2.1e-55 Score=463.37 Aligned_cols=241 Identities=40% Similarity=0.722 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-hCCCCCCCCCC
Q 004043 195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEPG 273 (777)
Q Consensus 195 ~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~e~~ 273 (777)
.+++.|+|++|||||||+||+.|+.||+++++.+.+.|++||++||+||+.||+||.|||+||..|+. .+|.+ +..
T Consensus 8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~~ 84 (260)
T 1hu3_A 8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DKP 84 (260)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999998 46543 223
Q ss_pred CchhhHHHHHHHHHHHHHhhhhchHH-------HHhhcCChHHH--H--HHhhHHHHHHhhhhhHHHHHHHHHhcCCCCH
Q 004043 274 GKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQE--M--ERMDQERLVKLRTLGNIRLIGELLKQKMVPE 342 (777)
Q Consensus 274 ~~~~~Fr~~LL~~cQeeFe~~~~~~~-------ei~~~~~~e~E--~--E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e 342 (777)
+....||++||++||++|++.++... ++.....+++. + |.++.+.+.|+|++|+|+||||||+++||++
T Consensus 85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~ 164 (260)
T 1hu3_A 85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE 164 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence 35678999999999999999875321 11111111110 0 1111123578999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh
Q 004043 343 KIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 422 (777)
Q Consensus 343 ~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~ 422 (777)
+|||+||..||++ |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.++.+.++++|+||||+||+|||+
T Consensus 165 ~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~ 238 (260)
T 1hu3_A 165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238 (260)
T ss_dssp HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999986 7999999999999999999997 345568999999999999999999999999999999999
Q ss_pred CCCcccccccCcccHHHHHHHH
Q 004043 423 NNWVPRREEMKAKTITEIHSEA 444 (777)
Q Consensus 423 nnW~~r~~~~~pkti~eI~~ea 444 (777)
|||++++.+.+||||+|||+||
T Consensus 239 ~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 239 CNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp TTTCC-----------------
T ss_pred cCCCCCccccCCCcHHHHHhhC
Confidence 9999999999999999999987
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=5.8e-52 Score=442.44 Aligned_cols=248 Identities=29% Similarity=0.504 Sum_probs=195.8
Q ss_pred hhcccCCcccccC-----------C---CChHHHHHHHHHHhhccCChhhHHHHHHHHHhccC-----CCHHHHHHHHHH
Q 004043 178 LIKAEVPWSARRG-----------N---LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI-----TTPDILKGVIEL 238 (777)
Q Consensus 178 l~~~e~~w~~~~~-----------~---~~e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i-----~t~e~L~~VI~l 238 (777)
|++++++|+|+.. . ..+.+++.|+|++|||||||+||+.|+.||+.+++ ++.++|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 6788999998532 1 24578999999999999999999999999999876 678999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCC-C--chhhHHHHHHHHHHHHHhhhhch--HHHHhhcCChHHHH--
Q 004043 239 IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG-G--KDITFKRILLNHCQEAFEGADNT--RAEIRQMTAPEQEM-- 311 (777)
Q Consensus 239 IFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~-~--~~~~Fr~~LL~~cQeeFe~~~~~--~~ei~~~~~~e~E~-- 311 (777)
||+||+.||+||+|||+||..|+..+|....++.+ + +...||++||++||++|++.+.. ....+ .+..+.|+
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~-~~~~e~e~~~ 160 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNED-GTPLEPEMMS 160 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC-------------CC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccc-cchhhhhhhh
Confidence 99999999999999999999999988754333322 1 24689999999999999997531 10000 00001110
Q ss_pred HHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCc------
Q 004043 312 ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPK------ 385 (777)
Q Consensus 312 E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k------ 385 (777)
+..+++.+.|+|++|||+||||||+++||+++|||+||+.||+.. ...|+|++|||||+||+|||+.|++..+
T Consensus 161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~ 239 (284)
T 2vso_E 161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-TDSPSEETLESVVELLNTVGEQFETDSFRTGQAT 239 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 111233567899999999999999999999999999999999741 1248999999999999999999997652
Q ss_pred --hhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhC-CCcc
Q 004043 386 --SRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN-NWVP 427 (777)
Q Consensus 386 --~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~n-nW~~ 427 (777)
++..||.||.+|+.++.+.++++||||||+||+|||+| ||++
T Consensus 240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 35789999999999999999999999999999999996 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-47 Score=394.41 Aligned_cols=207 Identities=24% Similarity=0.423 Sum_probs=179.3
Q ss_pred CChHHHHHHHHHHhhccCC--hhhHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCC
Q 004043 192 LSEKDRVLKTVKGILNKLT--PEKFDVLKGQLIDS---GITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP 266 (777)
Q Consensus 192 ~~e~e~l~r~Vk~ILNKLT--penfd~l~~qLl~l---~i~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~ 266 (777)
.+..+.+.|+|++|||||| |+||+.++++|+++ .+++.+.|++||++||+||++||+||+|||+||.+|+..++.
T Consensus 13 ~~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~ 92 (234)
T 3rk6_A 13 MGRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTI 92 (234)
T ss_dssp -----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCC
Confidence 3456889999999999999 99999999999987 789999999999999999999999999999999999998764
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhc--------C
Q 004043 267 FPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ--------K 338 (777)
Q Consensus 267 ~~~~e~~~~~~~Fr~~LL~~cQeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~--------~ 338 (777)
.+ ...+||++||++||++|++.++.. + . | .+.|+|++|+|+||||||++ +
T Consensus 93 ~~------~~~~Fr~lLL~rcQ~eFe~~~~~~----~---~-------d--~~~k~r~lg~i~FIgELf~~l~~~~~~~~ 150 (234)
T 3rk6_A 93 SP------QSGNFRQLLLQRCRTEYEVKDQAA----K---G-------D--EVTRKRFHAFVLFLGELYLNLEIKGTNGQ 150 (234)
T ss_dssp CC------TTCCHHHHHHHHHHHHHTTHHHHT----S---S-------C--HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred CC------chhHHHHHHHHHHHHHHHhhHHhh----h---c-------c--HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 42 245899999999999999986421 1 1 1 13578999999999999998 8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcC--CchhhhHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 004043 339 MVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDEN--PKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHD 416 (777)
Q Consensus 339 mL~e~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~--~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~d 416 (777)
|++++|||.||.+||... ...|+|++|||+|+||+|||+.||+. ++++..||.||++|+.+..++.+|+||||||+|
T Consensus 151 ~l~e~I~~~ci~~Ll~~l-~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~d 229 (234)
T 3rk6_A 151 VTRADILQVGLRELLNAL-FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLK 229 (234)
T ss_dssp EECCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999998751 02489999999999999999999973 345578999999999999999999999999999
Q ss_pred HHHHH
Q 004043 417 VLDLR 421 (777)
Q Consensus 417 vidLR 421 (777)
|||||
T Consensus 230 lieLR 234 (234)
T 3rk6_A 230 LVELR 234 (234)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99998
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=1e-42 Score=358.87 Aligned_cols=192 Identities=20% Similarity=0.344 Sum_probs=158.6
Q ss_pred ChhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHHH
Q 004043 210 TPEKFDVLKGQLIDSGI--TTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHC 287 (777)
Q Consensus 210 Tpenfd~l~~qLl~l~i--~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~~~~~~Fr~~LL~~c 287 (777)
+-++|+..+.+|+...+ .+...|++||++||+||++||+||+|||+||.+|....+. +. +...||++||++|
T Consensus 12 ~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~----~~--g~~~Fr~~LLn~c 85 (224)
T 2i2o_A 12 KIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK----QT--NGSVFRRNLLNRL 85 (224)
T ss_dssp CCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH----HH--SCCHHHHHHHHHH
T ss_pred chhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc----cc--cchHHHHHHHHHH
Confidence 33455555555554332 2334689999999999999999999999999999886532 11 2345999999999
Q ss_pred HHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhc----C--CCC-HHHHHHHHHHHhhcCCCCC
Q 004043 288 QEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ----K--MVP-EKIVHHIVQELLENDGKTC 360 (777)
Q Consensus 288 QeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~----~--mL~-e~Ii~~cI~~LL~~~~~~~ 360 (777)
|++|++.++ .....|+|++|||+||||||++ + +++ ++|||.||..||+.. ..
T Consensus 86 Q~eFe~~ee-------------------~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~--~~ 144 (224)
T 2i2o_A 86 QQEFKAREE-------------------TRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD--AL 144 (224)
T ss_dssp HHHHHTHHH-------------------HHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH--HH
T ss_pred HHHHHChHH-------------------HHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC--CC
Confidence 999998521 1134689999999999999999 8 456 889999999999752 24
Q ss_pred CChhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHhCCCccccc
Q 004043 361 PAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE-LTTNSQLVPRLRFMIHDVLDLRANNWVPRRE 430 (777)
Q Consensus 361 p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~-l~~~~~lssRiRFmL~dvidLR~nnW~~r~~ 430 (777)
|+|++|||+|+||+|||+.||+..+ ..||.||.+|++ ++++.++|+||||||+||||||+|||++++.
T Consensus 145 p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 145 KNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 7999999999999999999998654 689999999999 7888899999999999999999999999875
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=99.97 E-value=5.1e-32 Score=266.72 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=139.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHH
Q 004043 604 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 683 (777)
Q Consensus 604 ~~~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~ 683 (777)
++.+|+||++++++++|+|||+++|++||++||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++
T Consensus 1 ~p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~ 79 (165)
T 2rg8_A 1 GLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTT 79 (165)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999977 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhh
Q 004043 684 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV 761 (777)
Q Consensus 684 q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v 761 (777)
||.+||..+++.|+|++||+|+||++||+|+||+|.+++||++||.+++.+..+..+++.+..+- ..|+...++.+|
T Consensus 80 ~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~-~ll~~~~~~~~~ 156 (165)
T 2rg8_A 80 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKAT-VLLSMSKGGKRK 156 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHHHHHHHHH-HHHHTC------
T ss_pred HHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHHHHHHHHH-HHHhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999976666665555444 666555444444
No 6
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=9.4e-32 Score=261.39 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHH
Q 004043 607 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDI 685 (777)
Q Consensus 607 ~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~lls~~q~ 685 (777)
.++|+++++++++|+|||+++|++||++||+||++|+|||+||+++|+++||++ +.+|+++++||.+|+++++||.+||
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 356899999999999999999999999999999999999999999999999996 7889999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004043 686 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 747 (777)
Q Consensus 686 ~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a 747 (777)
.+||.++++.|+||+||+|+||++||+|+++||.+|+|+++++..+ ..++ .+|++|+++
T Consensus 83 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~--p~~~-~~rk~f~s~ 141 (152)
T 2ion_A 83 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC--PSRS-RGRKRFVSE 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC--TTC-----------
T ss_pred HHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC--CCcc-cchhhhccc
Confidence 9999999999999999999999999999999999999999999984 4445 999999876
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.97 E-value=1.2e-30 Score=247.08 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHHH
Q 004043 608 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 686 (777)
Q Consensus 608 s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~lls~~q~~ 686 (777)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+++|+++||++ +.+|+++++||.+|+++|+||.+||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35799999999999999999999999999999999999999999999999998 48899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHH
Q 004043 687 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEV 731 (777)
Q Consensus 687 ~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~ 731 (777)
+||.++++.|+||+||+|+||++||+|+++||.+|+|+++|+..+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999998754
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.95 E-value=1.8e-28 Score=267.41 Aligned_cols=158 Identities=25% Similarity=0.318 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHH
Q 004043 605 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 684 (777)
Q Consensus 605 ~~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~q 684 (777)
+.+|+|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||+++.+|+++++||++|+++++||.+|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCCh-HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhhH
Q 004043 685 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVL 762 (777)
Q Consensus 685 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~-~~i~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v~ 762 (777)
|.+||.++++.++||.+|+|+||.+||.|+++++.+|++|+ +++..+++.+.+++....|+.++++.+....+-+++.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVG 161 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999 7778888888999999999999999998885555553
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.95 E-value=7.1e-28 Score=258.84 Aligned_cols=137 Identities=23% Similarity=0.335 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHH
Q 004043 606 KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRD 684 (777)
Q Consensus 606 ~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~lls~~q 684 (777)
.+++++++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||++|+++|+||.+|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4689999999999999999999999999999999999999999999999999997 778999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004043 685 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 747 (777)
Q Consensus 685 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a 747 (777)
|.+||.++++.|+||+||+|+||++||+|+++||.+|+|+++++..+ +...|++|+++
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~-----~~~~rkrf~se 296 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 296 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS-----CCC--------
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----Ccccccccccc
Confidence 99999999999999999999999999999999999999999988765 67789999776
No 10
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.94 E-value=6.1e-27 Score=255.88 Aligned_cols=135 Identities=24% Similarity=0.339 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHHH
Q 004043 608 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 686 (777)
Q Consensus 608 s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~lls~~q~~ 686 (777)
+.++++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+||.
T Consensus 212 ~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999997 67899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004043 687 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 747 (777)
Q Consensus 687 ~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a 747 (777)
+||.++++.|+||+||||+||++||+|+++||.+|+|++.|+... +.+.|++|+++
T Consensus 292 ~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~-----p~r~rkr~~se 347 (358)
T 3eiq_C 292 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 347 (358)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC-----CCC--------
T ss_pred HHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----cccCCcccccc
Confidence 999999999999999999999999999999999999999886644 67889999765
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.94 E-value=4.4e-27 Score=256.94 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=130.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHH
Q 004043 604 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 683 (777)
Q Consensus 604 ~~~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~ 683 (777)
.+.+|++|++|+++++|+|||+++|++||+.||+||++|.||++||+.+|++|||+++.+||++++||++|+. ++||++
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~ 123 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTN 123 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhc
Q 004043 684 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQS 754 (777)
Q Consensus 684 q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a~l~~l~~ 754 (777)
||.+||..+++.|+|++||+|+||+|||.|+||||.+++|+++||.++...+.+ .....++..+-..|+.
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~-~~~~~~l~~a~~~L~~ 193 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDC-VQARAALDKATVLLSM 193 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CC-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccc-hHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999987655543 3445556666555543
No 12
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=251.50 Aligned_cols=154 Identities=18% Similarity=0.290 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-CChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHH
Q 004043 607 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAP-TYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDI 685 (777)
Q Consensus 607 ~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P-~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~q~ 685 (777)
-+.||+.|+++++|+|||+++|++||++||+||++| +|||+||+.+|+++||+++.+||++++||++|+.+++||.+||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 478999999999999999999999999999999999 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhhHhh
Q 004043 686 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAV 764 (777)
Q Consensus 686 ~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v~~~ 764 (777)
.+||.++++.++|+.+|+|+||.|||+|+||+|.+|++++++|...+.. |....++..+++.+...++..++...
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~----G~~~~l~l~vl~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES----GTHFPLFLLCLQQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG----GTTTTHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc----cchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988764 23345778899998888666666443
No 13
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.93 E-value=9.6e-27 Score=250.05 Aligned_cols=144 Identities=22% Similarity=0.238 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004043 611 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 690 (777)
Q Consensus 611 el~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~q~~~Gf~ 690 (777)
|++|+++++|+|||+++|++||+.||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++||.+||.
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred HHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCC
Q 004043 691 LYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSP 756 (777)
Q Consensus 691 ~vle~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~~~~~~~~~~~~a~l~~l~~~~ 756 (777)
.+++.|+|+++|+|+||++||.|+||+|.+++||++||.++..+..+. ..++++..+...|+...
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~-~g~~~l~~a~~~l~~~~ 144 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV-QARAALDKATVLLSMSK 144 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCH-HHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccch-HHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999988876544 44456666666776554
No 14
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.70 E-value=7e-16 Score=160.08 Aligned_cols=217 Identities=16% Similarity=0.231 Sum_probs=159.3
Q ss_pred HHHHHHhh-ccCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcCCCchHHH--HHHHHHHhhhCCCCCCCCCCCc
Q 004043 199 LKTVKGIL-NKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY--ALLCSDLNEKLPPFPSDEPGGK 275 (777)
Q Consensus 199 ~r~Vk~IL-NKLTpenfd~l~~qLl~l~i~t~e~L~~VI~lIFeKAi~Ep~fs~mY--A~LC~~L~~~lp~~~~~e~~~~ 275 (777)
...||.+| -.|+..+.+.++++|..+...+.++.+.+++. |-|+. .-.|..++ |.|...|....|
T Consensus 5 ~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~-~~ky~nI~~lA~ll~~L~~~~~---------- 72 (248)
T 1uw4_B 5 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIW-NVKYNSIHCVANLLAGLVLYQE---------- 72 (248)
T ss_dssp HHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGG-GSCGGGHHHHHHHHHHHTTTCH----------
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchh-hcccchHHHHHHHHHHHHhhCh----------
Confidence 45566666 67778899999999999999888765544444 44442 23565554 777777776532
Q ss_pred hhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 004043 276 DITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLEN 355 (777)
Q Consensus 276 ~~~Fr~~LL~~cQeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~Ii~~cI~~LL~~ 355 (777)
.|--.++...-|+.... +|..+ .+.++|.+++|+||||||+.+||+..+|++|+-.|+.-
T Consensus 73 --~~~i~vVD~vlE~Ir~g----------------LE~n~--~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~f 132 (248)
T 1uw4_B 73 --DVGIHVVDGVLEDIRLG----------------MEVNQ--PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSF 132 (248)
T ss_dssp --HHHHHHHHHHHHHHHHH----------------HHHCC--GGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred --HHhhhhHHHHHHHHHHH----------------HhcCc--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcC
Confidence 45555665544444432 22222 23457889999999999999999999999999999973
Q ss_pred C--CCCCCChhh-------HHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHh----------hCCCCChHHHHHHHH
Q 004043 356 D--GKTCPAEEN-------VEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT----------TNSQLVPRLRFMIHD 416 (777)
Q Consensus 356 ~--~~~~p~Ee~-------IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~----------~~~~lssRiRFmL~d 416 (777)
. ....+++.+ |+++|.||.|||..++. ...+..||.|+..++... +...++.+|+||++|
T Consensus 133 g~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~-~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D 211 (248)
T 1uw4_B 133 GVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDR-GSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISD 211 (248)
T ss_dssp TCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Confidence 2 111235556 99999999999999996 345567999988888764 345689999999999
Q ss_pred HHHH-HhCCCcccccccCcccHHHHHHHHHHhc
Q 004043 417 VLDL-RANNWVPRREEMKAKTITEIHSEAEKNL 448 (777)
Q Consensus 417 vidL-R~nnW~~r~~~~~pkti~eI~~eae~~~ 448 (777)
++++ |.+-|..+.-++.++.+++|.++.-..+
T Consensus 212 ~~~~lrp~~~~~~~~eEa~~~v~~le~~~~~~~ 244 (248)
T 1uw4_B 212 TLELLRPKIKLCNSLEESIRQVQDLEREFLIKL 244 (248)
T ss_dssp HHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999 9888888887778888999977665444
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.87 E-value=2.2e-08 Score=119.53 Aligned_cols=197 Identities=15% Similarity=0.236 Sum_probs=146.6
Q ss_pred ChHHHHHHHHHHhhccCCh-------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCC
Q 004043 193 SEKDRVLKTVKGILNKLTP-------EKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP 265 (777)
Q Consensus 193 ~e~e~l~r~Vk~ILNKLTp-------enfd~l~~qLl~l~i~t~e~L~~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp 265 (777)
++.+.+..++++++-||+. ++++.|...|.+ ++ ...-..+++.|+.-++..|.++.+||.|...|+.+.|
T Consensus 3 ~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~-~l--~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p 79 (771)
T 1h2v_C 3 SDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA-DL--PNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY 79 (771)
T ss_dssp -------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH
T ss_pred CCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-HH--HhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh
Confidence 4567788999999999997 555555555532 22 2234457888888889999999999999999998643
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHH
Q 004043 266 PFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIV 345 (777)
Q Consensus 266 ~~~~~e~~~~~~~Fr~~LL~~cQeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~Ii 345 (777)
.|-..++.++...|....+ ..+ ++++...++||++|++.+++++..+
T Consensus 80 ------------e~G~~lv~~l~~~f~~~l~----------------~~~-----~~~~k~~lrFLa~L~n~~Vv~~~~i 126 (771)
T 1h2v_C 80 ------------NFGGEFVEAMIRQLKESLK----------------ANN-----YNEAVYLVRFLSDLVNCHVIAAPSM 126 (771)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH----------------TTC-----HHHHHHHHHHHHHHHHTTSBCHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHH----------------ccC-----hHHHHHHHHHHHHhccCCeecHHHH
Confidence 6778888888888887532 111 2466789999999999999999999
Q ss_pred HHHHHHHhhcCC-CCCCC---hhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHhhCC-C---------------
Q 004043 346 HHIVQELLENDG-KTCPA---EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNS-Q--------------- 405 (777)
Q Consensus 346 ~~cI~~LL~~~~-~~~p~---Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~-~--------------- 405 (777)
..++..|+.... ...|. ++-+.|++..|..||+.|-+. .+..++.+|++++.+.... +
T Consensus 127 l~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~ 204 (771)
T 1h2v_C 127 VAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPH 204 (771)
T ss_dssp HHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSC
T ss_pred HHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCC
Confidence 999999998521 11232 568899999999999999753 3356889999998866332 2
Q ss_pred -CChHHHHHHHHHHHHHhCCCcc
Q 004043 406 -LVPRLRFMIHDVLDLRANNWVP 427 (777)
Q Consensus 406 -lssRiRFmL~dvidLR~nnW~~ 427 (777)
...++.+|+..|..+|+|+|..
T Consensus 205 ~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 205 PQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp CCCBHHHHHHHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHHHHCCCCC
Confidence 1479999999999999999974
No 16
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=95.28 E-value=0.27 Score=50.23 Aligned_cols=191 Identities=18% Similarity=0.284 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHhccCCCHHHHHHHHH-HHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCC
Q 004043 195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIE-LIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG 273 (777)
Q Consensus 195 ~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i~t~e~L~~VI~-lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~ 273 (777)
+|.+..+|-.|+|.||++|++.-+++|.++ + +++...=++. +|.++|-.||+|-.+|++|...|...
T Consensus 4 de~v~dki~Fi~NNls~~N~~~k~~elk~~-l-~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~---------- 71 (229)
T 4gmj_A 4 EENIQEKIAFIFNNLSQSNMTQKVEELKET-V-KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP---------- 71 (229)
T ss_dssp CHHHHHHHHHHHHSCCSSTHHHHHHHHHHH-S-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH----------
T ss_pred cHHhhhhheeehhcCCHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH----------
Confidence 377899999999999999999999998874 2 2344444443 45677889999999999999987542
Q ss_pred CchhhHHHHHHHHHHHHHhhhhchHHHHhh-cCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcC--CCCHHHHHHHHH
Q 004043 274 GKDITFKRILLNHCQEAFEGADNTRAEIRQ-MTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQK--MVPEKIVHHIVQ 350 (777)
Q Consensus 274 ~~~~~Fr~~LL~~cQeeFe~~~~~~~ei~~-~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~~--mL~e~Ii~~cI~ 350 (777)
.|.+.+++. .|.....+ +.. .+.... .|+ ...| -|| .+||-|-.-. -|..+ +-.++
T Consensus 72 ----~l~~~vl~~---T~~~i~~L---L~s~~~~~~~-~eR----~~LK--NLG--~WLG~lTLarnkPI~~~--~l~~K 130 (229)
T 4gmj_A 72 ----EFNKMVLNE---TYRNIKVL---LTSDKAAANF-SDR----SLLK--NLG--HWLGMITLAKNKPILHT--DLDVK 130 (229)
T ss_dssp ----HHHHHHHHH---HHHHHHHH---HTSCCCTTCH-HHH----HHHH--HHH--HHHHHHTGGGTCCCCTT--TCCHH
T ss_pred ----HHHHHHHHH---HHHHHHHH---Hhhcccccch-HHH----HHHH--HHH--HHHHHHHHccCCCchhc--ccCHH
Confidence 344444442 22222111 100 000000 011 1222 344 5777775432 11111 11233
Q ss_pred HHhhc-CCCCC-CChhhHHHHHHHHHHHhh--hhhcCCchhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 004043 351 ELLEN-DGKTC-PAEENVEAICQFFNTIGK--QLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 421 (777)
Q Consensus 351 ~LL~~-~~~~~-p~Ee~IE~Lc~LL~tiGk--~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR 421 (777)
.||-. ..+.+ --.--|-.+|++|..|-+ .+. +. -.++-.++.-|.++-..+.+.--++|=|+-+..-=
T Consensus 131 ~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk--PP-NPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l 202 (229)
T 4gmj_A 131 SLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFR--PP-NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNL 202 (229)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS--TT-CHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCceEEEeehhHHHHHHhcccCCcCC--CC-ChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHc
Confidence 44321 00000 000134556777766632 222 22 25677899999999888888899999999887643
No 17
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=94.89 E-value=0.16 Score=52.42 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHhhccCChhhHHHHHHHHHhccCCCHHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCC
Q 004043 193 SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIEL-IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDE 271 (777)
Q Consensus 193 ~e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i~t~e~L~~VI~l-IFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e 271 (777)
...+.+..+|-.|+|.||++|++.=+.++.++ + +++...=++.- |.++|..||+|-.+|.+|+..|...
T Consensus 29 ~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~-l-~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~-------- 98 (249)
T 4b89_A 29 GAPKDVVEKVLFVLNNVTLANLNNKVDELKKS-L-TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG-------- 98 (249)
T ss_dssp CCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHH-C-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH--------
T ss_pred CcCHHHHhhhhhhhhcCChHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH--------
Confidence 34688999999999999999999999998885 2 34455555554 5668999999999999999998753
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004043 272 PGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQE 351 (777)
Q Consensus 272 ~~~~~~~Fr~~LL~~cQeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~~mL~e~Ii~~cI~~ 351 (777)
.+-+.+++.. |.....+ +. ... +...+. ...| -|| .+||-|-.-.=-+-..-+-.++.
T Consensus 99 ------~L~~~vl~~T---~~~i~~L---L~-~~~----i~~~eR-s~LK--NLG--~WLG~iTLarNkPI~~~~ld~K~ 156 (249)
T 4b89_A 99 ------LLHQFMVNVT---LRQLFVL---LS-TKD----EQAIDK-KHLK--NLA--SWLGCITLALNKPIKHKNIAFRE 156 (249)
T ss_dssp ------HHHHHHHHHH---HHHHHHH---HT-BSC----GGGSCH-HHHH--HHH--HHHHHHTGGGTCCCCTTTBCHHH
T ss_pred ------HHHHHHHHHH---HHHHHHH---hh-hcc----cChHHH-HHHH--HHH--HHHhHHHHhcCCCchhcccCHHH
Confidence 2333333321 1111110 10 000 000111 1222 344 56777754321110000112334
Q ss_pred Hhhc-CCCCCCChhhHHHHHHHHHHHhhh-hhcCCchhhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 004043 352 LLEN-DGKTCPAEENVEAICQFFNTIGKQ-LDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 421 (777)
Q Consensus 352 LL~~-~~~~~p~Ee~IE~Lc~LL~tiGk~-Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR 421 (777)
||-. .... --+.-|-.+|++|..|-.. .-. +. -.++-.++.-|.++-..+.+.--++|-|+-++.-=
T Consensus 157 LL~eay~~g-~L~~vIPFVcKvLe~~k~SkiFk-PP-NPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l 225 (249)
T 4b89_A 157 MLIEAYKEN-RLEIVVPFVTKILQRASESKIFK-PP-NPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSF 225 (249)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHGGGTTCSSSS-TT-CHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CeEEEeeHHHHHHHhcccCCccC-CC-CchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHc
Confidence 4321 1000 1123566677777776422 111 22 25777889999999888888999999999987643
No 18
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1
Probab=85.58 E-value=0.51 Score=41.99 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=18.5
Q ss_pred cccccCHHHHHHHHHHh-hhcHHHH
Q 004043 63 ERVRYTREQLLQLKEVA-QLTEDIL 86 (777)
Q Consensus 63 ~~~~y~~~~l~~~~~~~-~~~~~~~ 86 (777)
-+.+|.++|||||+++| .=|+.=+
T Consensus 60 ~Kf~Ydp~FLLQF~~v~~~kpd~~w 84 (100)
T 1rf8_B 60 VKYTYGPTFLLQFKDKLNVKADAEW 84 (100)
T ss_dssp CSSCCCHHHHHHHHHHHCCCCSSHH
T ss_pred CccccChHHHHHHHHHhccCCCHHH
Confidence 36899999999999999 3343334
No 19
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.51 E-value=20 Score=40.45 Aligned_cols=161 Identities=22% Similarity=0.297 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHhhcCCCc----hHHHHHHHHHHhhhCCCCCCC
Q 004043 196 DRVLKTVKGILNKLTPEKFDVLKGQLIDSGI-TTPDILKGVIELIFDKAVLEPTF----CPMYALLCSDLNEKLPPFPSD 270 (777)
Q Consensus 196 e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~i-~t~e~L~~VI~lIFeKAi~Ep~f----s~mYA~LC~~L~~~lp~~~~~ 270 (777)
+-+...++.+|-.+|-+.|+.++.=|-.+.+ .+....+.++++|.++|=.+..| .....+|...+...+|-|..
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~- 254 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK- 254 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT-
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc-
Confidence 4477889999999999999988865555655 57788899999999998654444 46778999999888887742
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCC-CC--HHHHHH
Q 004043 271 EPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKM-VP--EKIVHH 347 (777)
Q Consensus 271 e~~~~~~~Fr~~LL~~cQeeFe~~~~~~~ei~~~~~~e~E~E~~d~e~~~Krr~lGnIrFIGELyk~~m-L~--e~Ii~~ 347 (777)
+...+.|-.++.++ -|-.. ..++..+++ .+ +.+-..+.++|+--+-- +. ...+-.
T Consensus 255 --~v~StkFv~y~~~k---IlP~l-------~~L~e~~~~---~~-------~kL~LLK~lAE~s~~~~~~e~a~~~l~~ 312 (507)
T 3u0r_A 255 --NVHSTRFVTYFCEQ---VLPNL-------GTLTTPVEG---LD-------IQLEVLKLLAEMSSFCGDMEKLETNLRK 312 (507)
T ss_dssp --TBCCHHHHHHHHHH---TGGGT-------TCCCCC--C---CC-------HHHHHHHHHHHHHTTCCCCTTHHHHHHH
T ss_pred --CCChHHHHHHHHHh---hccch-------hhccccccc---hH-------HHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 22345566666553 23221 223322211 01 12467788899877543 43 224444
Q ss_pred HHHHHhhcCCCCCCCh----------------hhHHHHHHHHHHHhhhh
Q 004043 348 IVQELLENDGKTCPAE----------------ENVEAICQFFNTIGKQL 380 (777)
Q Consensus 348 cI~~LL~~~~~~~p~E----------------e~IE~Lc~LL~tiGk~L 380 (777)
+...|+...+ ..|++ -.||||.-.|.+.|++.
T Consensus 313 iy~~L~~ymP-~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~ 360 (507)
T 3u0r_A 313 LFDKLLEYMP-LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL 360 (507)
T ss_dssp HHHHHHTTSC-CCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCC-CCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence 4445554432 11221 16899999999999864
No 20
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=81.50 E-value=0.49 Score=30.22 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=14.8
Q ss_pred CCcccccCHHHHHHHHH
Q 004043 61 GHERVRYTREQLLQLKE 77 (777)
Q Consensus 61 ~~~~~~y~~~~l~~~~~ 77 (777)
+|-||-|.|+|||+.|.
T Consensus 2 GGTrIiYdR~fLl~~rn 18 (21)
T 3hxi_C 2 GSGRIIYDRKFLMECRN 18 (26)
T ss_pred CceEEEEeHHHHHHhcc
Confidence 57899999999999874
No 21
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=71.60 E-value=90 Score=32.90 Aligned_cols=172 Identities=13% Similarity=0.175 Sum_probs=95.7
Q ss_pred HHHHHHHHhhccCC--hhhHHHHHHHHHhc-cC--CCHH----HHHHHHHHHHHHhh----cCCCchHHHHHHHHHHhhh
Q 004043 197 RVLKTVKGILNKLT--PEKFDVLKGQLIDS-GI--TTPD----ILKGVIELIFDKAV----LEPTFCPMYALLCSDLNEK 263 (777)
Q Consensus 197 ~l~r~Vk~ILNKLT--penfd~l~~qLl~l-~i--~t~e----~L~~VI~lIFeKAi----~Ep~fs~mYA~LC~~L~~~ 263 (777)
...|+|+-.+|+|| .+.+..++.+|.++ .- .+.. .|..+.+.|...|. ..|..+.-||.++..|...
T Consensus 43 ~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~ 122 (297)
T 3pev_B 43 RHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQ 122 (297)
T ss_dssp HHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHh
Confidence 58899999999998 55777787777764 11 1221 33344444444432 3688899999999999887
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHH------HhhhhchHHHHhhcC---ChHHHHHHhhHHHHHHhhhhhHHHHHHHH
Q 004043 264 LPPFPSDEPGGKDITFKRILLNHCQEA------FEGADNTRAEIRQMT---APEQEMERMDQERLVKLRTLGNIRLIGEL 334 (777)
Q Consensus 264 lp~~~~~e~~~~~~~Fr~~LL~~cQee------Fe~~~~~~~ei~~~~---~~e~E~E~~d~e~~~Krr~lGnIrFIGEL 334 (777)
+|. |..+|+.+.... |.-.....+-...+- ..+-..|. +...-.|+-|.+++-+-+
T Consensus 123 ~p~------------~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E~---~~~y~~Rm~Gi~~lyAAI 187 (297)
T 3pev_B 123 FPE------------LQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWED---NTSYDERMGGILSLFAII 187 (297)
T ss_dssp STT------------HHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBCC---HHHHHHHHHHHHHHHHHH
T ss_pred Ccc------------HHHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCccc---HHHHHHHHHHHHHHHHHH
Confidence 653 455555544333 111000000011110 00000111 111235788999999999
Q ss_pred HhcCC-----------CCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCC
Q 004043 335 LKQKM-----------VPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENP 384 (777)
Q Consensus 335 yk~~m-----------L~e~Ii~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~ 384 (777)
-.... .+-.-.=..+..+|+.... ..+.-...+|..+|+++|..|-...
T Consensus 188 ~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le~ag~~l~~~Y 247 (297)
T 3pev_B 188 TRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWDAAAVQFLQAY 247 (297)
T ss_dssp HHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHHHHHHHHHHHH
Confidence 76531 2223344455666664210 0122234588899999999987543
No 22
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=45.32 E-value=65 Score=36.02 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhccCC--------CChHHHHHHHHHHHhCCCCCHHH
Q 004043 616 TVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIP--------PCVEPVIQLLEFLLNKNVLTTRD 684 (777)
Q Consensus 616 i~~ll~EY~~~~D~~EA~~cvkEL~~P~~~-~e~V~~~I~~aLEk~~--------~~re~v~~LL~~L~~~~lls~~q 684 (777)
+..+|+-|-..||+++|+..+.++..-... ..++..++..++-+.. ...+.+..|+..+...|+.+...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 456788899999999999999998643332 2345555555554321 12456778888888887664433
No 23
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=34.66 E-value=5.8e+02 Score=29.39 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCCC-Ch-HHHHHHHHHHHhcc-----CCCChHH--HHHHHHHHHhCCC
Q 004043 610 ADLRKKTVSLLEEYFSIR-ILDEALQCVEELRAPT-YH-PEVVKEAIALALEK-----IPPCVEP--VIQLLEFLLNKNV 679 (777)
Q Consensus 610 eel~kki~~ll~EY~~~~-D~~EA~~cvkEL~~P~-~~-~e~V~~~I~~aLEk-----~~~~re~--v~~LL~~L~~~~l 679 (777)
.++++++++..+.+|+.. .+++++.-++.++... -+ .++..++|..-+|- +=..+|+ ++.|+-.|+..++
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999886 6999999999997543 23 56666666666652 2233444 9999999999999
Q ss_pred CCHHHHHHHHHHHhhcchh
Q 004043 680 LTTRDIGTGCLLYGSLLDD 698 (777)
Q Consensus 680 ls~~q~~~Gf~~vle~LdD 698 (777)
|+.-.+.-|+.-|++.+-+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 24
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=31.35 E-value=1.3e+02 Score=27.20 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHH
Q 004043 605 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTR 683 (777)
Q Consensus 605 ~~~s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~lls~~ 683 (777)
...+++.|++++..+-. +-..+..+..-+-+- ..++.++|..+ ...|.+. ...+=.+.-|+..++...-=...
T Consensus 2 ssf~~~~l~~~L~~L~~---s~~sI~~~s~w~l~~--~~~a~~iv~~i-~~~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 2 SSFSESALEKKLSELSN---SQQSVQTLSLWLIHH--RKHAGPIVSVW-HRELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp -CCCHHHHHHHHHHCCS---STTHHHHHHHHHHHT--GGGHHHHHHHH-HHHHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCHHHHHHHHHHccc---cHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 35678888888776510 112233333322221 12345555544 4455554 44455555555555321001124
Q ss_pred HHHHHHHHHhhcc-hhhh-cCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhh
Q 004043 684 DIGTGCLLYGSLL-DDIG-IDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKV 735 (777)
Q Consensus 684 q~~~Gf~~vle~L-dDl~-iDiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~ 735 (777)
+|...|..++..+ .++. ..-+.....+.+++.-.-..++.+..+|..+-..+
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l 129 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSM 129 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 6777777653322 1110 01144556666777766677777777776665444
No 25
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.43 E-value=71 Score=35.71 Aligned_cols=83 Identities=6% Similarity=-0.060 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 004043 615 KTVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYG 693 (777)
Q Consensus 615 ki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~-~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~q~~~Gf~~vl 693 (777)
....+|.-|...|++++|...++++..-... ..++...+..++=+. .+.+.+.+|+..+...|+.+.......+...+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3577899999999999999999998644333 245555666666544 35688899999999998887666666555544
Q ss_pred hcchh
Q 004043 694 SLLDD 698 (777)
Q Consensus 694 e~LdD 698 (777)
....+
T Consensus 186 ~~~g~ 190 (501)
T 4g26_A 186 MDTKN 190 (501)
T ss_dssp HHTTC
T ss_pred hhCCC
Confidence 44443
No 26
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.40 E-value=1.9e+02 Score=31.32 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 004043 615 KTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYG 693 (777)
Q Consensus 615 ki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~~-~~re~v~~LL~~L~~~~lls~~q~~~Gf~~vl 693 (777)
..+.+++.|..+.+.+|-..++..|.+ ...+.++.+.+..+|+.+. ...+ +..++..+.. +-...+ .++.=+.
T Consensus 253 ~~~~l~~~y~~s~~~~ek~~ll~aL~~-s~d~~ll~~~L~~~l~~~~ir~qD-~~~~~~~v~~-n~~g~~---~aw~fl~ 326 (419)
T 3rjo_A 253 GWDFLYSKYQFSLSSTEKSQIEFALCR-TQNKEKLQWLLDESFKGDKIKTQE-FPQILTLIGR-NPVGYP---LAWQFLR 326 (419)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTSSSCGGG-HHHHHHHHHT-STTTHH---HHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhc-CcchHH---HHHHHHH
Confidence 467889999999999999999999976 4568899999999997653 3333 3345555543 433333 2233333
Q ss_pred hcchhhhcCCCchhHHHHHHHHHHHHcCCCChH---HHHHHHhhhcchhHHHHHHHHHHHHHhcC
Q 004043 694 SLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFI---VLKEVLKKVEDNMFRRSIFTAAMKSIQSS 755 (777)
Q Consensus 694 e~LdDl~iDiP~A~~~La~~iaraI~~~~l~~~---~i~~~~~~~~~~~~~~~~~~a~l~~l~~~ 755 (777)
+..+.|.--.+.....++.+|.. +.....+.. .|+..++.....+...+.+..++..++.|
T Consensus 327 ~nw~~l~~~~~~~~~~~~~~i~~-~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~qale~i~~n 390 (419)
T 3rjo_A 327 KNWNKLVQKFELGSSSIAHMVMG-TTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEEN 390 (419)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH-TTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCchhHHHHHHH-HhhcCCCHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 44444443333333445555533 233444544 34445544433332234566777777665
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.13 E-value=3.7e+02 Score=25.91 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCC---CC---ChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCC
Q 004043 630 DEALQCVEELRA---PT---YHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 703 (777)
Q Consensus 630 ~EA~~cvkEL~~---P~---~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDi 703 (777)
..|+.|+..|-. +. |+..++..++...-|++...|+.+...|..++.. ++.+++...+... |.+ .-
T Consensus 75 ~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~---l~~---~~ 146 (242)
T 2qk2_A 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVES---LSN---KN 146 (242)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHH---TTC---SC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHH---HcC---CC
Confidence 477888887642 22 3345666666665566677889999999999874 4556665555444 433 35
Q ss_pred CchhHHHHHHHHHHHHc
Q 004043 704 PKAPNNFGEMVGKLVVA 720 (777)
Q Consensus 704 P~A~~~La~~iaraI~~ 720 (777)
|.+......+++.++..
T Consensus 147 ~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 147 PSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88999999999997755
No 28
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.98 E-value=1.1e+02 Score=29.38 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChh----hHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHHHHh
Q 004043 326 GNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEE----NVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT 401 (777)
Q Consensus 326 GnIrFIGELyk~~mL~e~Ii~~cI~~LL~~~~~~~p~Ee----~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~ 401 (777)
+.+.-|+++.+.+-...+....+|++-|++ .+.. .+..|=.+++.||+.+...-..+..+ +.|..++
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~-----~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl----~eL~kl~ 102 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQS-----PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFL----NELIKVV 102 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH----HHHHHHh
Confidence 566778888888765555555555555543 2333 44445555666788776322223344 4455555
Q ss_pred hC----CCCChHHHHHHHHHHHHHhCCCcccccccCcccHHHHHHHH
Q 004043 402 TN----SQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 444 (777)
Q Consensus 402 ~~----~~lssRiRFmL~dvidLR~nnW~~r~~~~~pkti~eI~~ea 444 (777)
.. +..+..||-.|..+|.--..... . .|+ |.+.+++-
T Consensus 103 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~----~-~~~-i~~~y~~L 143 (171)
T 1juq_A 103 SPKYLGDRVSEKVKTKVIELLYSWTMALP----E-EAK-IKDAYHML 143 (171)
T ss_dssp CCCCCCTTSCHHHHHHHHHHHHHHHHHCT----T-CHH-HHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHcC----C-CcH-HHHHHHHH
Confidence 42 35688999999999987543322 1 233 66655544
No 29
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=25.09 E-value=40 Score=29.88 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCC
Q 004043 627 RILDEALQCVEELRAPTYHPEVVKEAIALALE---KIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 703 (777)
Q Consensus 627 ~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLE---k~~~~re~v~~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDi 703 (777)
.+++|| ++|-.|....++.+.=++..++ .+..+.|-+-.-|..| ++.--+|+..-|.++++.|+|..--|
T Consensus 21 m~VeeA----k~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~L---K~YavSQL~~Hy~ri~~~l~d~e~Ki 93 (116)
T 1yoz_A 21 KSVEEA----DKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLL---KTYVVSQLSIHFERLKEFAESKGFKI 93 (116)
T ss_dssp SCGGGH----HHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH---HHHHHHTHHHHHHHHHHHHHTTC---
T ss_pred hhHHHH----HHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457787 7777766666666555544444 3566677766666655 33556789999999999999999877
Q ss_pred -----CchhHHHHHHHHH
Q 004043 704 -----PKAPNNFGEMVGK 716 (777)
Q Consensus 704 -----P~A~~~La~~iar 716 (777)
|.+-+-+|-+|.|
T Consensus 94 ~kkl~~ev~~~i~~~~~~ 111 (116)
T 1yoz_A 94 EKKLDPEVINEIALYIDR 111 (116)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHhHHHHHHHH
Confidence 3344444444443
No 30
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=24.14 E-value=5.2e+02 Score=25.43 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC---CCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004043 614 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI---PPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 690 (777)
Q Consensus 614 kki~~ll~EY~~~~D~~EA~~cvkEL~~P~~~~e~V~~~I~~aLEk~---~~~re~v~~LL~~L~~~~lls~~q~~~Gf~ 690 (777)
...-.+|.+++..+|.+++...++++..-.....-+..-|...|-++ +-+|+-+..|+..| +++..+++
T Consensus 40 ~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~l--------DdI~D~ie 111 (227)
T 3l39_A 40 SASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCM--------DDVIDGIN 111 (227)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH--------HHHHHHHH
Confidence 34566799999887877777777766432233344555555566664 77899999888876 34555555
Q ss_pred HHhhcchhhhcC
Q 004043 691 LYGSLLDDIGID 702 (777)
Q Consensus 691 ~vle~LdDl~iD 702 (777)
.+...+.=..++
T Consensus 112 ~~a~~l~l~~~~ 123 (227)
T 3l39_A 112 SSAKRIVIYNPR 123 (227)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHhhccCCC
Confidence 554444433333
No 31
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.81 E-value=2e+02 Score=26.88 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CCChHHHHHHHHHH----------HhccCCCChHHHHHHHHHH
Q 004043 608 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRA---PTYHPEVVKEAIAL----------ALEKIPPCVEPVIQLLEFL 674 (777)
Q Consensus 608 s~eel~kki~~ll~EY~~~~D~~EA~~cvkEL~~---P~~~~e~V~~~I~~----------aLEk~~~~re~v~~LL~~L 674 (777)
....+.+.+..++.-.|..+-++|....|++|.. |.|..++|...+.. +++.++.+.+.+..+.+.|
T Consensus 2 ~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L 81 (153)
T 3us6_A 2 EVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQF 81 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 3456788899999999999988999999999953 45555555544432 3333333555555555555
Q ss_pred Hh
Q 004043 675 LN 676 (777)
Q Consensus 675 ~~ 676 (777)
..
T Consensus 82 KG 83 (153)
T 3us6_A 82 KG 83 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 32
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=20.29 E-value=5.8e+02 Score=24.52 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCC--ChHHHHHHHHHHHhc-------cCCC-ChHHHHHHHHH---HH
Q 004043 610 ADLRKKTVSLLEEYFSI-RILDEALQCVEELRAPT--YHPEVVKEAIALALE-------KIPP-CVEPVIQLLEF---LL 675 (777)
Q Consensus 610 eel~kki~~ll~EY~~~-~D~~EA~~cvkEL~~P~--~~~e~V~~~I~~aLE-------k~~~-~re~v~~LL~~---L~ 675 (777)
++|.+-+...|..-+.. .+.++++.-|+.|..-. -.++|+..++...|. +... ..+.+.++|.. |+
T Consensus 20 ~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll 99 (189)
T 1paq_A 20 EDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLF 99 (189)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 35777777777666654 68999999998875322 235555554443332 2211 33455555553 33
Q ss_pred hCCCCCHHHHHHHHHHHhhcchhhhc--CCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhh
Q 004043 676 NKNVLTTRDIGTGCLLYGSLLDDIGI--DLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKV 735 (777)
Q Consensus 676 ~~~lls~~q~~~Gf~~vle~LdDl~i--DiP~A~~~La~~iaraI~~~~l~~~~i~~~~~~~ 735 (777)
. .+++...-. ..+|..+..... +-|..-..+..++-.+...++|....|-.=..+.
T Consensus 100 ~-~~~~~~~~q---~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~ 157 (189)
T 1paq_A 100 K-RQAFDEEEY---IDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNV 157 (189)
T ss_dssp G-GTCCSHHHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred H-HHHcCcHHH---HHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCC
Confidence 3 444433322 222333333333 7888888889999999999999998887666654
Done!