Query 004044
Match_columns 777
No_of_seqs 592 out of 2612
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 2.3E-17 5E-22 187.4 2.0 136 344-484 124-265 (1134)
2 PF13639 zf-RING_2: Ring finge 99.0 2.7E-10 5.9E-15 88.6 2.1 43 345-388 2-44 (44)
3 KOG4443 Putative transcription 99.0 2E-10 4.4E-15 130.9 1.9 172 343-600 18-199 (694)
4 PHA02929 N1R/p28-like protein; 98.9 1.4E-09 3E-14 113.6 3.8 56 342-397 173-232 (238)
5 PHA02926 zinc finger-like prot 98.8 1.9E-09 4E-14 109.7 3.9 57 342-398 169-236 (242)
6 KOG4430 Topoisomerase I-bindin 98.8 2E-08 4.4E-13 114.1 9.8 356 239-665 167-523 (553)
7 KOG0317 Predicted E3 ubiquitin 98.7 6.4E-09 1.4E-13 109.4 2.3 47 343-393 239-285 (293)
8 PLN03208 E3 ubiquitin-protein 98.7 1.3E-08 2.8E-13 102.7 3.9 48 342-393 17-80 (193)
9 PF15227 zf-C3HC4_4: zinc fing 98.7 1.5E-08 3.1E-13 78.5 3.0 38 346-387 1-42 (42)
10 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.3E-08 2.8E-13 81.4 2.7 46 344-393 3-49 (50)
11 KOG0320 Predicted E3 ubiquitin 98.7 9.5E-09 2.1E-13 101.3 2.2 50 342-393 130-179 (187)
12 PF12678 zf-rbx1: RING-H2 zinc 98.6 2.6E-08 5.7E-13 86.1 3.4 46 343-388 19-73 (73)
13 PF13923 zf-C3HC4_2: Zinc fing 98.6 2.5E-08 5.4E-13 75.7 2.6 38 346-387 1-39 (39)
14 KOG0823 Predicted E3 ubiquitin 98.6 2E-08 4.3E-13 103.0 2.7 48 342-393 46-96 (230)
15 KOG4628 Predicted E3 ubiquitin 98.5 4.2E-08 9.1E-13 107.0 2.5 50 344-394 230-280 (348)
16 KOG1244 Predicted transcriptio 98.5 4.1E-08 9E-13 101.9 1.1 51 434-484 279-330 (336)
17 smart00504 Ubox Modified RING 98.5 1.4E-07 3.1E-12 78.3 3.8 45 344-392 2-46 (63)
18 COG5540 RING-finger-containing 98.4 1.3E-07 2.8E-12 99.7 3.5 50 342-392 322-372 (374)
19 cd00162 RING RING-finger (Real 98.4 2.2E-07 4.8E-12 70.7 3.3 43 345-390 1-44 (45)
20 PF00097 zf-C3HC4: Zinc finger 98.4 2.1E-07 4.5E-12 71.0 2.8 38 346-387 1-41 (41)
21 PF14634 zf-RING_5: zinc-RING 98.3 3E-07 6.5E-12 71.7 2.9 44 345-389 1-44 (44)
22 KOG0287 Postreplication repair 98.3 1.5E-07 3.3E-12 100.4 1.3 50 342-395 22-71 (442)
23 TIGR00599 rad18 DNA repair pro 98.3 2.6E-07 5.6E-12 103.2 3.1 48 342-393 25-72 (397)
24 COG5243 HRD1 HRD ubiquitin lig 98.3 5.7E-07 1.2E-11 97.1 4.9 54 341-394 285-347 (491)
25 KOG1512 PHD Zn-finger protein 98.3 3E-07 6.4E-12 96.2 1.9 50 435-485 313-363 (381)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 1.1E-06 2.4E-11 68.4 2.5 35 346-381 1-35 (43)
27 smart00184 RING Ring finger. E 98.2 1.3E-06 2.8E-11 64.0 2.9 38 346-387 1-39 (39)
28 KOG2164 Predicted E3 ubiquitin 98.2 8E-07 1.7E-11 100.1 2.4 47 343-393 186-237 (513)
29 PF12861 zf-Apc11: Anaphase-pr 98.2 1.1E-06 2.4E-11 77.7 2.7 50 343-392 21-82 (85)
30 KOG0955 PHD finger protein BR1 98.1 1.4E-06 3.1E-11 106.4 4.1 127 435-577 218-361 (1051)
31 KOG2177 Predicted E3 ubiquitin 98.1 1.3E-06 2.8E-11 91.2 2.2 45 341-389 11-55 (386)
32 COG5432 RAD18 RING-finger-cont 98.1 1.3E-06 2.8E-11 91.7 1.9 48 344-395 26-73 (391)
33 PF00628 PHD: PHD-finger; Int 98.1 6.9E-07 1.5E-11 71.4 -0.2 47 438-484 1-50 (51)
34 KOG0804 Cytoplasmic Zn-finger 98.0 1.8E-06 4E-11 95.5 1.8 45 342-388 174-218 (493)
35 COG5574 PEX10 RING-finger-cont 98.0 2.2E-06 4.7E-11 89.7 2.2 47 342-392 214-262 (271)
36 KOG4299 PHD Zn-finger protein 97.9 2.9E-06 6.4E-11 97.5 1.2 49 437-485 254-305 (613)
37 PF04564 U-box: U-box domain; 97.9 6.3E-06 1.4E-10 71.3 2.8 47 343-393 4-51 (73)
38 TIGR00570 cdk7 CDK-activating 97.9 8.3E-06 1.8E-10 88.1 3.6 52 342-394 2-56 (309)
39 smart00249 PHD PHD zinc finger 97.8 1.4E-05 2.9E-10 61.6 2.9 45 438-482 1-47 (47)
40 KOG0802 E3 ubiquitin ligase [P 97.8 6.5E-06 1.4E-10 96.5 1.6 48 342-389 290-338 (543)
41 COG5141 PHD zinc finger-contai 97.8 7.8E-06 1.7E-10 91.0 1.1 67 436-503 193-269 (669)
42 KOG1039 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 88.0 2.5 55 343-397 161-226 (344)
43 KOG0956 PHD finger protein AF1 97.7 1.7E-05 3.7E-10 91.4 2.3 47 437-484 6-56 (900)
44 KOG0383 Predicted helicase [Ge 97.6 3.2E-05 7E-10 91.6 3.5 87 365-484 2-93 (696)
45 KOG1493 Anaphase-promoting com 97.6 1.9E-05 4.1E-10 67.9 1.0 51 343-393 20-82 (84)
46 COG5194 APC11 Component of SCF 97.6 3.7E-05 7.9E-10 66.7 2.8 50 344-393 21-82 (88)
47 KOG0311 Predicted E3 ubiquitin 97.6 8.5E-06 1.8E-10 88.1 -1.8 50 342-394 42-92 (381)
48 KOG0828 Predicted E3 ubiquitin 97.5 3.2E-05 6.9E-10 86.5 1.7 49 344-392 572-634 (636)
49 KOG0978 E3 ubiquitin ligase in 97.5 2.6E-05 5.6E-10 91.9 1.0 48 341-392 641-689 (698)
50 cd04718 BAH_plant_2 BAH, or Br 97.5 6.6E-05 1.4E-09 73.2 3.4 28 460-487 1-29 (148)
51 COG5219 Uncharacterized conser 97.3 6.5E-05 1.4E-09 89.0 1.2 51 343-393 1469-1524(1525)
52 PF11793 FANCL_C: FANCL C-term 97.3 5.9E-05 1.3E-09 64.9 0.4 50 344-393 3-67 (70)
53 KOG1246 DNA-binding protein ju 97.3 0.00037 8E-09 86.6 6.5 190 435-645 154-389 (904)
54 KOG2660 Locus-specific chromos 97.3 5.3E-05 1.1E-09 81.7 -0.8 52 342-396 14-65 (331)
55 KOG0824 Predicted E3 ubiquitin 97.2 0.00014 3E-09 77.6 1.6 48 343-394 7-55 (324)
56 KOG1245 Chromatin remodeling c 97.2 0.0001 2.2E-09 93.9 0.3 52 434-485 1106-1158(1404)
57 PF14835 zf-RING_6: zf-RING of 97.2 0.00014 3E-09 61.0 1.0 43 343-391 7-50 (65)
58 KOG1973 Chromatin remodeling p 97.1 0.00018 3.9E-09 77.6 1.4 36 449-485 230-268 (274)
59 KOG4172 Predicted E3 ubiquitin 97.1 0.00011 2.4E-09 59.4 -0.3 50 343-396 7-58 (62)
60 smart00744 RINGv The RING-vari 97.1 0.0004 8.8E-09 55.6 2.8 42 345-388 1-49 (49)
61 KOG2930 SCF ubiquitin ligase, 97.0 0.00043 9.3E-09 63.0 2.3 29 363-391 79-107 (114)
62 KOG0954 PHD finger protein [Ge 96.9 0.00044 9.5E-09 80.8 2.7 49 435-484 270-320 (893)
63 KOG4323 Polycomb-like PHD Zn-f 96.9 0.00071 1.5E-08 76.7 3.8 133 342-485 82-224 (464)
64 KOG4265 Predicted E3 ubiquitin 96.8 0.0007 1.5E-08 74.0 2.6 50 342-395 289-339 (349)
65 KOG0827 Predicted E3 ubiquitin 96.8 0.00062 1.3E-08 74.7 1.9 47 344-390 5-54 (465)
66 KOG0957 PHD finger protein [Ge 96.7 0.0012 2.5E-08 74.3 3.7 49 436-484 544-597 (707)
67 KOG4159 Predicted E3 ubiquitin 96.6 0.00099 2.1E-08 75.0 2.1 49 342-394 83-131 (398)
68 KOG1734 Predicted RING-contain 96.4 0.0011 2.4E-08 69.7 0.8 52 342-393 223-282 (328)
69 KOG1645 RING-finger-containing 96.3 0.0019 4.2E-08 71.4 2.4 53 342-394 3-58 (463)
70 COG5152 Uncharacterized conser 96.3 0.0014 3.1E-08 66.0 0.8 51 340-394 193-243 (259)
71 KOG1813 Predicted E3 ubiquitin 96.3 0.0016 3.4E-08 69.6 1.1 51 341-395 239-289 (313)
72 KOG0297 TNF receptor-associate 96.2 0.0021 4.5E-08 72.7 1.8 51 342-396 20-71 (391)
73 KOG1814 Predicted E3 ubiquitin 95.9 0.0011 2.3E-08 73.6 -2.0 110 344-468 185-310 (445)
74 PHA03096 p28-like protein; Pro 95.9 0.002 4.3E-08 69.7 0.0 46 344-389 179-231 (284)
75 COG5034 TNG2 Chromatin remodel 95.8 0.0042 9E-08 65.1 1.5 42 441-484 225-269 (271)
76 PF11789 zf-Nse: Zinc-finger o 95.7 0.0076 1.6E-07 49.9 2.7 42 341-386 9-53 (57)
77 KOG1785 Tyrosine kinase negati 95.6 0.0045 9.7E-08 68.2 1.3 47 345-395 371-419 (563)
78 KOG1002 Nucleotide excision re 95.5 0.0048 1E-07 70.0 1.0 48 341-392 534-586 (791)
79 KOG2879 Predicted E3 ubiquitin 95.5 0.0085 1.8E-07 63.5 2.6 50 342-395 238-290 (298)
80 KOG1428 Inhibitor of type V ad 95.4 0.006 1.3E-07 75.2 1.3 53 342-395 3485-3547(3738)
81 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.011 2.4E-07 63.4 3.1 52 341-393 111-162 (260)
82 PF15446 zf-PHD-like: PHD/FYVE 95.4 0.0073 1.6E-07 59.9 1.6 48 438-485 1-60 (175)
83 KOG3039 Uncharacterized conser 95.3 0.012 2.7E-07 61.3 2.9 52 342-393 220-271 (303)
84 KOG4367 Predicted Zn-finger pr 95.1 0.005 1.1E-07 68.4 -0.7 33 342-378 3-35 (699)
85 PF13831 PHD_2: PHD-finger; PD 95.0 0.0033 7.2E-08 47.2 -1.5 34 449-483 2-36 (36)
86 PF14570 zf-RING_4: RING/Ubox 95.0 0.018 3.8E-07 46.1 2.4 45 346-391 1-47 (48)
87 KOG4445 Uncharacterized conser 94.7 0.0088 1.9E-07 64.0 0.2 51 342-393 114-187 (368)
88 KOG1952 Transcription factor N 94.7 0.017 3.8E-07 69.1 2.5 52 341-392 189-247 (950)
89 PF14632 SPT6_acidic: Acidic N 94.7 0.0063 1.4E-07 55.1 -1.0 16 44-59 12-27 (92)
90 KOG4692 Predicted E3 ubiquitin 94.4 0.021 4.6E-07 62.2 2.1 49 341-393 420-468 (489)
91 COG5222 Uncharacterized conser 93.9 0.029 6.4E-07 59.9 1.8 44 343-389 274-318 (427)
92 KOG1941 Acetylcholine receptor 93.5 0.026 5.7E-07 62.3 0.8 54 341-394 363-418 (518)
93 PF14447 Prok-RING_4: Prokaryo 93.2 0.037 8E-07 45.3 1.0 44 344-393 8-51 (55)
94 PHA02862 5L protein; Provision 93.0 0.07 1.5E-06 51.9 2.7 47 343-394 2-55 (156)
95 KOG4275 Predicted E3 ubiquitin 93.0 0.023 5E-07 60.7 -0.7 43 343-393 300-343 (350)
96 KOG0825 PHD Zn-finger protein 92.9 0.1 2.2E-06 62.2 4.3 55 344-398 97-160 (1134)
97 KOG1571 Predicted E3 ubiquitin 92.6 0.049 1.1E-06 60.1 1.2 47 342-395 304-350 (355)
98 KOG3002 Zn finger protein [Gen 92.6 0.063 1.4E-06 58.7 2.0 45 342-394 47-93 (299)
99 KOG4739 Uncharacterized protei 91.8 0.066 1.4E-06 56.2 1.0 51 344-398 4-54 (233)
100 PF03854 zf-P11: P-11 zinc fin 91.4 0.069 1.5E-06 42.4 0.5 44 344-393 3-47 (50)
101 KOG1244 Predicted transcriptio 91.4 0.053 1.1E-06 57.5 -0.3 56 437-492 225-292 (336)
102 KOG3268 Predicted E3 ubiquitin 91.3 0.14 2.9E-06 51.4 2.5 51 344-394 166-230 (234)
103 COG5175 MOT2 Transcriptional r 91.3 0.12 2.5E-06 56.4 2.1 52 342-393 13-65 (480)
104 KOG4443 Putative transcription 91.2 0.091 2E-06 61.7 1.4 56 435-490 17-77 (694)
105 PHA02825 LAP/PHD finger-like p 91.1 0.15 3.3E-06 50.4 2.7 48 342-394 7-61 (162)
106 COG5236 Uncharacterized conser 90.5 0.21 4.6E-06 54.6 3.2 51 342-396 60-112 (493)
107 KOG2932 E3 ubiquitin ligase in 90.5 0.1 2.3E-06 56.2 0.9 46 345-395 92-137 (389)
108 PF12906 RINGv: RING-variant d 90.4 0.14 2.9E-06 40.8 1.3 40 346-387 1-47 (47)
109 KOG0826 Predicted E3 ubiquitin 90.4 0.16 3.4E-06 55.4 2.2 46 342-390 299-344 (357)
110 PF05883 Baculo_RING: Baculovi 90.2 0.11 2.4E-06 50.1 0.8 37 343-380 26-68 (134)
111 COG5574 PEX10 RING-finger-cont 90.2 0.16 3.4E-06 54.0 1.9 137 343-485 95-260 (271)
112 KOG4185 Predicted E3 ubiquitin 89.9 0.17 3.6E-06 55.0 2.0 48 344-391 4-54 (296)
113 KOG3053 Uncharacterized conser 89.1 0.16 3.5E-06 53.6 1.0 54 342-395 19-85 (293)
114 KOG3970 Predicted E3 ubiquitin 87.8 0.43 9.4E-06 49.5 3.1 49 341-391 48-104 (299)
115 PF07800 DUF1644: Protein of u 87.7 0.42 9.1E-06 47.4 2.8 32 343-378 2-46 (162)
116 PF04147 Nop14: Nop14-like fam 87.6 0.57 1.2E-05 58.3 4.6 17 663-679 742-758 (840)
117 KOG4323 Polycomb-like PHD Zn-f 87.0 1.2 2.6E-05 51.3 6.3 50 435-485 82-133 (464)
118 PF10367 Vps39_2: Vacuolar sor 86.6 0.29 6.2E-06 44.6 0.9 31 343-375 78-108 (109)
119 KOG1001 Helicase-like transcri 86.4 0.32 6.9E-06 58.9 1.5 43 344-391 455-499 (674)
120 KOG1940 Zn-finger protein [Gen 86.2 0.46 1E-05 51.3 2.4 48 342-389 157-204 (276)
121 KOG0298 DEAD box-containing he 86.1 0.22 4.7E-06 62.6 -0.2 47 341-390 1151-1197(1394)
122 PF04147 Nop14: Nop14-like fam 86.0 0.61 1.3E-05 58.0 3.7 18 725-742 783-804 (840)
123 KOG1812 Predicted E3 ubiquitin 85.7 0.27 5.8E-06 55.8 0.3 46 342-388 145-197 (384)
124 KOG0956 PHD finger protein AF1 83.5 1.2 2.6E-05 52.9 4.2 119 362-484 43-179 (900)
125 KOG1473 Nucleosome remodeling 83.3 0.61 1.3E-05 57.9 1.9 46 437-485 345-391 (1414)
126 KOG3161 Predicted E3 ubiquitin 83.1 0.42 9.1E-06 56.1 0.4 43 344-389 12-54 (861)
127 PF05290 Baculo_IE-1: Baculovi 82.3 0.91 2E-05 43.8 2.3 52 344-395 81-135 (140)
128 PF14812 PBP1_TM: Transmembran 82.2 0.42 9.2E-06 42.4 0.0 8 1-8 9-16 (81)
129 KOG2034 Vacuolar sorting prote 81.7 0.78 1.7E-05 56.0 2.0 35 342-378 816-850 (911)
130 KOG3800 Predicted E3 ubiquitin 81.2 1 2.3E-05 48.6 2.5 49 345-393 2-52 (300)
131 PF08746 zf-RING-like: RING-li 81.2 1.2 2.6E-05 34.8 2.2 38 346-387 1-43 (43)
132 PF14569 zf-UDP: Zinc-binding 81.0 1.5 3.2E-05 38.6 2.9 55 341-395 7-65 (80)
133 KOG1512 PHD Zn-finger protein 80.5 0.51 1.1E-05 50.5 -0.1 49 437-485 259-317 (381)
134 PF14446 Prok-RING_1: Prokaryo 80.5 0.8 1.7E-05 37.6 1.0 34 435-468 4-38 (54)
135 KOG0957 PHD finger protein [Ge 80.3 0.76 1.7E-05 52.6 1.2 49 437-485 120-179 (707)
136 KOG2114 Vacuolar assembly/sort 80.2 0.73 1.6E-05 55.9 1.0 43 344-393 841-884 (933)
137 KOG2807 RNA polymerase II tran 80.2 0.41 8.8E-06 52.2 -0.9 46 436-484 330-375 (378)
138 KOG4362 Transcriptional regula 79.5 0.51 1.1E-05 56.5 -0.5 46 342-391 20-68 (684)
139 KOG1473 Nucleosome remodeling 78.3 0.43 9.3E-06 59.2 -1.6 130 343-490 344-484 (1414)
140 KOG2817 Predicted E3 ubiquitin 75.8 1.9 4.1E-05 48.5 2.6 43 344-387 335-380 (394)
141 PF10272 Tmpp129: Putative tra 75.3 1.8 3.9E-05 48.5 2.3 28 366-393 312-352 (358)
142 PF12861 zf-Apc11: Anaphase-pr 73.7 1.3 2.9E-05 39.7 0.6 48 437-485 33-80 (85)
143 COG5220 TFB3 Cdk activating ki 72.4 1.4 3.1E-05 46.2 0.6 53 341-394 8-66 (314)
144 KOG1999 RNA polymerase II tran 69.4 2.2 4.7E-05 52.6 1.3 8 477-484 623-630 (1024)
145 KOG0309 Conserved WD40 repeat- 67.5 3.3 7.1E-05 49.8 2.1 45 344-390 1029-1074(1081)
146 KOG3113 Uncharacterized conser 67.4 4 8.6E-05 43.4 2.5 88 303-393 72-159 (293)
147 PLN02189 cellulose synthase 66.8 4.5 9.7E-05 50.9 3.2 54 342-395 33-90 (1040)
148 PLN03237 DNA topoisomerase 2; 66.6 13 0.00028 48.7 7.3 16 264-279 1446-1461(1465)
149 KOG1701 Focal adhesion adaptor 66.0 1.6 3.4E-05 49.5 -0.8 34 342-378 301-334 (468)
150 KOG3579 Predicted E3 ubiquitin 65.6 3.2 6.9E-05 44.8 1.4 38 342-380 267-305 (352)
151 KOG2068 MOT2 transcription fac 64.6 4.5 9.7E-05 44.7 2.4 50 344-393 250-299 (327)
152 PLN02638 cellulose synthase A 63.8 5.9 0.00013 50.0 3.5 54 342-395 16-73 (1079)
153 PF14446 Prok-RING_1: Prokaryo 63.6 6.2 0.00014 32.5 2.5 45 343-391 5-51 (54)
154 PLN02436 cellulose synthase A 63.4 5.1 0.00011 50.5 2.9 54 342-395 35-92 (1094)
155 KOG4718 Non-SMC (structural ma 63.0 4.3 9.3E-05 42.1 1.8 47 344-393 182-228 (235)
156 KOG1100 Predicted E3 ubiquitin 62.9 3.5 7.6E-05 43.0 1.2 38 346-391 161-199 (207)
157 PLN02400 cellulose synthase 60.1 6.2 0.00014 49.9 2.8 54 342-395 35-92 (1085)
158 PF02724 CDC45: CDC45-like pro 59.5 3.3 7.2E-05 50.0 0.3 14 569-582 479-492 (622)
159 KOG0827 Predicted E3 ubiquitin 59.5 1 2.2E-05 50.3 -3.6 51 344-394 197-247 (465)
160 KOG3899 Uncharacterized conser 59.2 4.9 0.00011 43.5 1.5 30 365-394 325-367 (381)
161 PF00628 PHD: PHD-finger; Int 59.2 3.3 7.1E-05 32.8 0.1 43 345-388 1-49 (51)
162 KOG2897 DNA-binding protein YL 58.6 7.2 0.00016 43.7 2.7 7 462-468 276-282 (390)
163 PF02891 zf-MIZ: MIZ/SP-RING z 58.5 7.5 0.00016 31.3 2.1 42 344-390 3-50 (50)
164 KOG1493 Anaphase-promoting com 58.5 2.9 6.3E-05 36.7 -0.3 47 437-484 32-78 (84)
165 PLN02915 cellulose synthase A 57.9 7.3 0.00016 49.1 2.9 53 342-394 14-70 (1044)
166 PRK14559 putative protein seri 56.9 8.8 0.00019 46.6 3.3 47 437-484 2-49 (645)
167 KOG2231 Predicted E3 ubiquitin 56.6 5.7 0.00012 47.9 1.6 47 345-395 2-55 (669)
168 PLN02195 cellulose synthase A 56.3 8.9 0.00019 48.1 3.2 51 342-392 5-59 (977)
169 COG5183 SSM4 Protein involved 56.0 8.6 0.00019 46.8 2.9 50 342-393 11-67 (1175)
170 KOG0801 Predicted E3 ubiquitin 55.2 3.6 7.9E-05 40.9 -0.2 28 343-371 177-204 (205)
171 KOG1812 Predicted E3 ubiquitin 55.1 5.5 0.00012 45.3 1.2 45 342-387 305-351 (384)
172 PF10497 zf-4CXXC_R1: Zinc-fin 54.2 6 0.00013 36.9 1.0 49 436-485 7-70 (105)
173 KOG1815 Predicted E3 ubiquitin 53.8 6.8 0.00015 45.4 1.6 36 342-380 69-104 (444)
174 PTZ00415 transmission-blocking 53.8 8.8 0.00019 50.1 2.6 37 589-625 970-1006(2849)
175 KOG4299 PHD Zn-finger protein 51.7 12 0.00026 44.5 3.2 46 437-485 48-95 (613)
176 KOG1609 Protein involved in mR 49.1 9.2 0.0002 41.4 1.6 52 343-394 78-136 (323)
177 PF10083 DUF2321: Uncharacteri 48.4 11 0.00023 37.6 1.8 45 347-394 8-52 (158)
178 PF07649 C1_3: C1-like domain; 47.0 6.4 0.00014 28.1 0.0 28 438-465 2-29 (30)
179 PF01363 FYVE: FYVE zinc finge 45.3 10 0.00022 31.9 1.0 36 342-377 8-43 (69)
180 KOG0383 Predicted helicase [Ge 45.1 1.5 3.2E-05 53.2 -5.7 68 430-500 500-569 (696)
181 PF14569 zf-UDP: Zinc-binding 44.3 5.8 0.00013 35.0 -0.6 48 435-484 8-59 (80)
182 KOG3612 PHD Zn-finger protein 43.6 22 0.00048 41.7 3.6 50 436-488 60-111 (588)
183 PF07975 C1_4: TFIIH C1-like d 43.0 16 0.00035 29.8 1.7 27 361-387 23-49 (51)
184 PF11793 FANCL_C: FANCL C-term 43.0 13 0.00028 32.1 1.2 49 437-485 3-64 (70)
185 PF07191 zinc-ribbons_6: zinc- 42.1 6 0.00013 34.3 -0.9 42 344-394 2-43 (70)
186 PTZ00415 transmission-blocking 41.9 12 0.00026 49.0 1.3 15 742-756 1079-1093(2849)
187 KOG1815 Predicted E3 ubiquitin 41.7 14 0.00031 42.7 1.8 28 359-387 178-205 (444)
188 KOG0269 WD40 repeat-containing 40.5 21 0.00046 43.4 2.9 45 344-390 780-826 (839)
189 KOG0943 Predicted ubiquitin-pr 38.4 18 0.00039 45.9 1.9 40 718-758 2424-2463(3015)
190 PF06844 DUF1244: Protein of u 36.7 18 0.00039 31.0 1.1 13 368-380 11-23 (68)
191 PF04216 FdhE: Protein involve 36.4 9.3 0.0002 41.6 -0.8 41 344-388 173-218 (290)
192 KOG0943 Predicted ubiquitin-pr 35.6 22 0.00048 45.2 2.1 9 506-514 2264-2272(3015)
193 KOG4628 Predicted E3 ubiquitin 35.1 17 0.00037 40.8 1.0 47 437-485 230-276 (348)
194 PF06906 DUF1272: Protein of u 34.1 51 0.0011 27.5 3.3 46 344-393 6-53 (57)
195 cd00065 FYVE FYVE domain; Zinc 34.0 25 0.00054 28.3 1.6 34 344-377 3-36 (57)
196 KOG2113 Predicted RNA binding 34.0 29 0.00063 38.2 2.4 46 343-394 343-389 (394)
197 KOG1829 Uncharacterized conser 33.8 12 0.00025 44.7 -0.6 41 343-387 511-556 (580)
198 PF15446 zf-PHD-like: PHD/FYVE 33.7 26 0.00056 35.4 1.9 22 448-469 121-142 (175)
199 TIGR00622 ssl1 transcription f 33.5 30 0.00065 32.8 2.2 30 452-484 82-111 (112)
200 KOG3039 Uncharacterized conser 33.2 26 0.00057 37.3 1.9 31 344-378 44-74 (303)
201 PF13901 DUF4206: Domain of un 32.4 27 0.00059 36.2 1.9 41 436-484 152-197 (202)
202 KOG0824 Predicted E3 ubiquitin 32.0 18 0.0004 39.6 0.6 47 343-393 105-152 (324)
203 COG5109 Uncharacterized conser 31.8 30 0.00065 38.2 2.1 43 344-387 337-382 (396)
204 KOG4185 Predicted E3 ubiquitin 31.8 10 0.00022 41.2 -1.4 48 343-390 207-265 (296)
205 smart00064 FYVE Protein presen 31.3 32 0.0007 28.8 1.9 36 343-378 10-45 (68)
206 COG5151 SSL1 RNA polymerase II 31.1 7.4 0.00016 42.5 -2.5 45 437-484 363-418 (421)
207 TIGR01562 FdhE formate dehydro 31.1 15 0.00032 40.6 -0.3 42 344-389 185-232 (305)
208 PF13901 DUF4206: Domain of un 30.8 32 0.00068 35.7 2.1 41 342-388 151-196 (202)
209 KOG3799 Rab3 effector RIM1 and 30.6 10 0.00022 36.7 -1.4 55 342-397 64-123 (169)
210 KOG1991 Nuclear transport rece 30.2 25 0.00055 44.0 1.4 60 85-176 881-950 (1010)
211 TIGR00570 cdk7 CDK-activating 29.7 27 0.00059 38.6 1.4 48 436-485 3-52 (309)
212 smart00647 IBR In Between Ring 29.7 17 0.00036 29.7 -0.2 34 345-378 20-59 (64)
213 KOG2231 Predicted E3 ubiquitin 29.1 11 0.00023 45.7 -1.9 47 343-394 78-127 (669)
214 PF10146 zf-C4H2: Zinc finger- 29.1 34 0.00074 36.3 2.0 27 368-394 195-221 (230)
215 PF10571 UPF0547: Uncharacteri 28.9 18 0.00038 25.4 -0.1 8 346-353 3-10 (26)
216 KOG3726 Uncharacterized conser 27.8 31 0.00067 41.7 1.5 42 344-388 655-696 (717)
217 PF07800 DUF1644: Protein of u 27.5 24 0.00052 35.3 0.5 32 436-467 2-43 (162)
218 PF13922 PHD_3: PHD domain of 27.4 15 0.00033 31.4 -0.8 27 450-483 42-68 (69)
219 KOG1356 Putative transcription 27.4 22 0.00047 43.8 0.2 33 344-378 230-262 (889)
220 PF13240 zinc_ribbon_2: zinc-r 27.0 14 0.0003 25.2 -0.9 12 379-390 11-22 (23)
221 KOG2897 DNA-binding protein YL 27.0 28 0.0006 39.2 0.9 21 1-21 6-26 (390)
222 PRK04023 DNA polymerase II lar 26.7 36 0.00078 43.0 1.9 48 341-394 624-676 (1121)
223 KOG4451 Uncharacterized conser 26.6 38 0.00082 35.7 1.7 27 368-394 250-276 (286)
224 TIGR00622 ssl1 transcription f 26.5 50 0.0011 31.4 2.3 45 344-388 56-110 (112)
225 PF09986 DUF2225: Uncharacteri 26.2 36 0.00079 35.6 1.6 15 381-395 5-19 (214)
226 TIGR00595 priA primosomal prot 26.1 41 0.00089 39.7 2.2 39 437-485 214-262 (505)
227 KOG2114 Vacuolar assembly/sort 25.6 30 0.00064 42.8 0.9 40 437-484 841-880 (933)
228 PLN02400 cellulose synthase 25.2 46 0.00099 42.5 2.4 50 434-485 34-87 (1085)
229 KOG0955 PHD finger protein BR1 25.1 37 0.00081 43.3 1.6 31 436-467 329-361 (1051)
230 PF10497 zf-4CXXC_R1: Zinc-fin 24.8 53 0.0012 30.6 2.2 24 366-389 37-69 (105)
231 KOG1734 Predicted RING-contain 24.6 27 0.00058 37.8 0.2 51 434-485 222-279 (328)
232 KOG2807 RNA polymerase II tran 23.7 44 0.00096 37.1 1.7 43 345-388 332-374 (378)
233 PRK03564 formate dehydrogenase 23.7 27 0.00059 38.7 0.1 44 343-388 187-233 (309)
234 KOG1844 PHD Zn-finger proteins 23.6 46 0.001 38.9 2.0 48 441-488 90-138 (508)
235 KOG0393 Ras-related small GTPa 22.9 71 0.0015 33.2 3.0 61 670-737 49-109 (198)
236 KOG2066 Vacuolar assembly/sort 22.8 34 0.00074 42.0 0.7 43 344-387 785-830 (846)
237 KOG1973 Chromatin remodeling p 22.4 26 0.00057 38.1 -0.3 28 363-390 238-268 (274)
238 PF05502 Dynactin_p62: Dynacti 22.1 38 0.00083 39.8 0.9 7 461-467 28-34 (483)
239 KOG0954 PHD finger protein [Ge 22.1 42 0.00092 40.9 1.2 31 437-468 381-412 (893)
240 PLN02638 cellulose synthase A 21.8 52 0.0011 42.0 2.0 49 435-485 16-68 (1079)
241 PF02318 FYVE_2: FYVE-type zin 21.8 54 0.0012 31.0 1.7 32 342-373 53-85 (118)
242 PF04423 Rad50_zn_hook: Rad50 21.4 32 0.0007 27.8 0.1 11 383-393 22-32 (54)
243 COG1773 Rubredoxin [Energy pro 21.2 58 0.0013 27.1 1.5 15 470-485 31-45 (55)
244 PLN02436 cellulose synthase A 21.1 60 0.0013 41.5 2.3 50 434-485 34-87 (1094)
245 KOG3118 Disrupter of silencing 21.0 65 0.0014 37.5 2.4 13 1-13 1-13 (517)
246 PF12773 DZR: Double zinc ribb 20.9 1E+02 0.0022 24.3 2.8 9 451-459 12-20 (50)
247 PLN02189 cellulose synthase 20.9 59 0.0013 41.4 2.2 49 435-485 33-85 (1040)
248 COG5243 HRD1 HRD ubiquitin lig 20.8 74 0.0016 36.0 2.7 48 435-485 286-343 (491)
249 KOG1595 CCCH-type Zn-finger pr 20.8 6.2E+02 0.013 30.2 10.1 65 615-681 391-455 (528)
250 KOG2773 Apoptosis antagonizing 20.6 66 0.0014 37.3 2.3 11 369-379 299-309 (483)
251 KOG2141 Protein involved in hi 20.5 49 0.0011 40.3 1.3 14 754-767 785-798 (822)
252 PF13832 zf-HC5HC2H_2: PHD-zin 20.4 50 0.0011 30.4 1.1 31 436-468 55-87 (110)
253 KOG1632 Uncharacterized PHD Zn 20.3 59 0.0013 36.6 1.9 39 450-488 74-116 (345)
254 PF05191 ADK_lid: Adenylate ki 20.2 62 0.0013 24.5 1.4 28 452-484 2-29 (36)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.65 E-value=2.3e-17 Score=187.35 Aligned_cols=136 Identities=26% Similarity=0.658 Sum_probs=95.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccCCCCcCcccccceeecccCC--CcccC
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPER--DQVYQ 421 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~er--dq~~~ 421 (777)
..|+|||..+.... +..-..|+|+||..||..|.....+||+||..|..+....-. + ...+|..+|.. .+..+
T Consensus 124 ~~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~--~--~~~~vR~lP~EEs~~~~e 198 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLEST--G--IEANVRCLPSEESENILE 198 (1134)
T ss_pred hhhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhcccCchhhhhhheeeeeccc--c--ccceeEecchhhhhhhhh
Confidence 56999999875432 233456999999999999999999999999999887643211 1 12233322221 11000
Q ss_pred C-CchhhccccCC-cCCcccccCcCCCCCcccccccccccc-cccccccCC-CCCCCCCccccCCCC
Q 004044 422 P-SEEDLRSFLDP-YENVICSECHQGGDDGLMLLCDICDSS-AHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 422 ~-~eEel~s~ld~-~e~~~C~vC~~~~~~~~lllCd~Cd~s-~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
. ..+.-..++.. -+...|.+|..++.+.+||+|+.|+.+ ||+|||+|+ .++|.+.|||+.|.-
T Consensus 199 ~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 199 KGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred hccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 0 00000001111 144789999999999999999999988 999999998 889999999999974
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.95 E-value=2.7e-10 Score=88.60 Aligned_cols=43 Identities=37% Similarity=0.813 Sum_probs=35.7
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
.|+||++.|..... .+.++|+|+||..||..|+....+||+||
T Consensus 2 ~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEK-VVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSC-EEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCe-EEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999965443 44455999999999999999999999997
No 3
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.95 E-value=2e-10 Score=130.91 Aligned_cols=172 Identities=23% Similarity=0.418 Sum_probs=113.1
Q ss_pred Ccccccccccccccccc--eeecCCCCcccHhhHHHHHhcC-----CCCCcccccccccccCCCCcCcccccceeecccC
Q 004044 343 KQVCGICLSEEDKRRLR--GTLNCCSHYFCFTCIMEWSKVE-----SRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPE 415 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~--~~l~~C~H~FC~~CI~~w~~~~-----~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~e 415 (777)
...|+||-..-. .... ..+..|+-.||..|+..|+... +.||-|
T Consensus 18 ~~mc~l~~s~G~-~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~c---------------------------- 68 (694)
T KOG4443|consen 18 CLMCPLCGSSGK-GRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSC---------------------------- 68 (694)
T ss_pred hhhhhhhccccc-cccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCc----------------------------
Confidence 356888865432 2112 2334489999999999998643 568888
Q ss_pred CCcccCCCchhhccccCCcCCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC-CCCCCCCC
Q 004044 416 RDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV-ALGSSSSQ 493 (777)
Q Consensus 416 rdq~~~~~eEel~s~ld~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~-~~g~~~~~ 493 (777)
.+|..|+.++++...++|+.|+.+||.||..|+ ..||.|.|+|++|..+ .+....++
T Consensus 69 ---------------------rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 69 ---------------------RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred ---------------------eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccc
Confidence 478999999999999999999999999999999 8999999999999887 44443222
Q ss_pred CCCCCccccccccccCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCCCccccCccccC-CCCCCCCCccccccchhh
Q 004044 494 AQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAA-SPGSGAGAPTLTGRRWIH 572 (777)
Q Consensus 494 ~~~~~~~~~~~~~~~f~~p~~~~~~~e~ldp~~~~s~R~~~~~~~~~l~s~~~~~~d~~~~-S~~s~~g~~t~~~~r~lh 572 (777)
.. ..|+.. ++. +..+ .+...||.|...| .+-+....+|..|.+|.|
T Consensus 128 -------~s---~~~~~~---------~~~----------~~~c----~s~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh 174 (694)
T KOG4443|consen 128 -------LS---LDLQEG---------YLQ----------CAPC----ASLSYCPVCLIVYQDSESLPMVCCSICQRWSH 174 (694)
T ss_pred -------cc---hhhhcc---------Ccc----------cccc----cccccCchHHHhhhhccchhhHHHHHhccccc
Confidence 11 112110 000 0111 1133455555555 233445678889999999
Q ss_pred hhhhhhhhhcccccCCCcccCcccCccc
Q 004044 573 RHIQNLLSMNRMNFMSGNNDGMPTANLN 600 (777)
Q Consensus 573 r~i~~l~s~~~~~~~~~~~~g~~~~~~~ 600 (777)
..|..+.....|..+.- -..+|..|
T Consensus 175 ~~c~~~sdd~~~q~~vD---~~~~CS~C 199 (694)
T KOG4443|consen 175 GGCDGISDDKYMQAQVD---LQYKCSTC 199 (694)
T ss_pred CCCCccchHHHHHHhhh---hhccccee
Confidence 99998777654444333 23344545
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.85 E-value=1.4e-09 Score=113.65 Aligned_cols=56 Identities=32% Similarity=0.874 Sum_probs=46.3
Q ss_pred CCcccccccccccccc----cceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccC
Q 004044 342 AKQVCGICLSEEDKRR----LRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKP 397 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~----~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~ 397 (777)
....|+||++.+.... ..+++++|+|.||..||..|+....+||+||..+..+.++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3578999999875332 1357888999999999999999999999999999877654
No 5
>PHA02926 zinc finger-like protein; Provisional
Probab=98.84 E-value=1.9e-09 Score=109.73 Aligned_cols=57 Identities=39% Similarity=0.972 Sum_probs=45.3
Q ss_pred CCcccccccccccc-----cccceeecCCCCcccHhhHHHHHhcC------CCCCcccccccccccCC
Q 004044 342 AKQVCGICLSEEDK-----RRLRGTLNCCSHYFCFTCIMEWSKVE------SRCPLCKQRFKTITKPE 398 (777)
Q Consensus 342 ~~~~C~ICle~~~~-----~~~~~~l~~C~H~FC~~CI~~w~~~~------~~CP~CR~~~~~i~~~~ 398 (777)
....|+|||+.+.. ....++|++|+|.||..||..|.... .+||+||..+..+.++.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 45789999997632 22357899999999999999999752 45999999998877653
No 6
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=98.77 E-value=2e-08 Score=114.10 Aligned_cols=356 Identities=33% Similarity=0.419 Sum_probs=216.9
Q ss_pred CccccCccccCcccccccccccccCCCCCCCCCCCCCCCccccchHHHHHHHHHhhhhcCcccccccCCCCCcchhcccc
Q 004044 239 NFIDEGVVVKGKSKTTLSRKRRRYVVPSDSDFVSSGSSDYEYTISEEEREQVREASQLCGKVKTSLRNSSSSKTIQEDGN 318 (777)
Q Consensus 239 Dfi~~~~~~~~kkkrK~~rkrRr~~v~~~~d~~~~~~~d~E~~~seEE~e~v~e~~~~~g~~~r~~~ssS~~~~~qE~ed 318 (777)
.+.........+++.+..+-.-++.|..++... ...+++++.++++.. +.+.. |...... .-+..........
T Consensus 167 le~~~~~~~~~~a~~~~d~pgp~v~V~~~~ll~-t~~sdeef~~~~~i~-Q~r~v----gt~s~~~-~~s~~~~a~v~~~ 239 (553)
T KOG4430|consen 167 LENDLCLAARLKAETSSDRPGPRVHVPSDSLLQ-TGESDEEFTISIEIK-QIRNV----GTKSSRN-NLSSIVQATVVKK 239 (553)
T ss_pred ccccchhhhhhccccCcCCCCCcceecchhhhc-ccccchhhcchhhhh-hhhhc----cchhHHh-hhhhhhccccccc
Confidence 333333344444555555544468888888888 778888888877432 21111 1111110 0010111111111
Q ss_pred CCCCCccccccchhhHHhhhhhcCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccCC
Q 004044 319 LGQPRKTLGRKGKEKIEEVKSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPE 398 (777)
Q Consensus 319 l~~~~~~~~~~~~e~~~~~~~~~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~ 398 (777)
++ ..+ ..+.. ......+......|.+|+.........+.+-.|.|.+|+.|+..|......||.|..++..+....
T Consensus 240 ~~--~sp-~~~~~-s~~~~deq~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~ 315 (553)
T KOG4430|consen 240 AP--VSP-VKKPH-SKRELDEQENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEA 315 (553)
T ss_pred cc--cCc-cCccc-chhhhhhhhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccccccc
Confidence 11 001 00111 111112234557899999876544345666668999999999999999999999999999988776
Q ss_pred CCcCcccccceeecccCCCcccCCCchhhccccCCcCCcccccCcCCCCCcccccccccccccccccccCCCCCCCCCcc
Q 004044 399 RSTAGVDLRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWY 478 (777)
Q Consensus 399 ~~~~~~~~~e~liqv~erdq~~~~~eEel~s~ld~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~ 478 (777)
+. | +.++.+++..+++.++.+.+ ++.++....|..|........+ +-|.+|+.....++.+ +
T Consensus 316 r~--G----~~~~~~~~~~~~~~~t~~r~--~~r~~r~~~~s~~r~~s~~~~s--------~s~s~~~~lg~~~~rs--~ 377 (553)
T KOG4430|consen 316 RQ--G----EHVIPVPKNDQLVKPTTERL--RLRPQRSIRSSECRQSSWDARS--------SSPSYCSELGFEVSRS--S 377 (553)
T ss_pred cc--C----Cccccccccchhhhccchhh--hcchhhhccccccccccccccc--------cCcccchhhccccccc--c
Confidence 55 2 67788999988887776665 7888888999999998774444 6799999987566666 8
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCCCccccCccccCCCCC
Q 004044 479 CDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAASPGS 558 (777)
Q Consensus 479 C~~C~~~~~g~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~e~ldp~~~~s~R~~~~~~~~~l~s~~~~~~d~~~~S~~s 558 (777)
|-.|.....|...++.+...-.. .+.+.+.+|++.+-.+.+++..+.++++..+. -.+.+++-....-..-|+
T Consensus 378 ~~~~~~~~~~~~~~~k~~~~~~~--~n~~r~~rpS~~~~s~~~~~~~~~~~~~p~~~---~~~~s~rq~~r~~~~~s~-- 450 (553)
T KOG4430|consen 378 CEGCSPVANGSAEPQKHKISERQ--ANSGRYGRPSSGVVSGQKRDVSSIASPRPEFF---SQSFSPRQPNRRANSPSP-- 450 (553)
T ss_pred ccccchhhcCCCCCccchhhhcc--ccCCcccCCCcccccceeecccCcCCCCCcch---hhcccccCCCcccCCCCc--
Confidence 99998876665555444322222 12455778888777777777666677766544 245555555443333232
Q ss_pred CCCCccccccchhhhhhhhhhhhcccccCCCcccCcccCccccccccchhhccccCCCCCCCcccc-chhHHHHHHhhhc
Q 004044 559 GAGAPTLTGRRWIHRHIQNLLSMNRMNFMSGNNDGMPTANLNSENFNSQLDQGRETVVQPARGQET-EPLHQAIFEERSH 637 (777)
Q Consensus 559 ~~g~~t~~~~r~lhr~i~~l~s~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~ 637 (777)
+.-++++.+++|++|++.+++.| +.+-.--. ..|.++ +...++.-+++|.
T Consensus 451 --~~~~~~r~~s~~~~~~~~~~~~r-------~~~~t~~~--------------------~~t~~~~~~h~~~~~s~~~~ 501 (553)
T KOG4430|consen 451 --GATTLSRSRSLQRNIQNTISGDR-------RGRATRHG--------------------EVTTEIGDIHLYAISSERLG 501 (553)
T ss_pred --cccccccccccccchhccccccc-------ccceeecc--------------------eeeeeecceeeeeccchhcC
Confidence 66788999999999999777754 11111100 113333 3466667788888
Q ss_pred cCCCCccccCCCCCcchhhhhhhhccCC
Q 004044 638 DHPTSLVENGDFLAPRLNYLRRQAVQDP 665 (777)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (777)
|+. ...++..|+...++..+-.
T Consensus 502 N~~------~~r~s~~~s~~~~~~~~~~ 523 (553)
T KOG4430|consen 502 NNN------DERLSPKLSEHGSEEAKRR 523 (553)
T ss_pred CCc------hhhcCcccccccchhhhhc
Confidence 887 2233556665555544433
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.4e-09 Score=109.43 Aligned_cols=47 Identities=34% Similarity=1.110 Sum_probs=41.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
...|.|||+... .|..++|||.||+.||..|......||+||..++.
T Consensus 239 ~~kC~LCLe~~~----~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 239 TRKCSLCLENRS----NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCceEEEecCCC----CCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 367999999876 57889999999999999999998889999988754
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.67 E-value=1.3e-08 Score=102.70 Aligned_cols=48 Identities=31% Similarity=0.924 Sum_probs=40.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc----------------CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV----------------ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~----------------~~~CP~CR~~~~~ 393 (777)
+...|+||++.+. .+++++|||+||+.||..|+.. ...||+||..+..
T Consensus 17 ~~~~CpICld~~~----dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR----DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC----CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4578999999986 5788899999999999999752 2469999998865
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.66 E-value=1.5e-08 Score=78.50 Aligned_cols=38 Identities=34% Similarity=0.708 Sum_probs=29.5
Q ss_pred cccccccccccccceeecCCCCcccHhhHHHHHhcC----CCCCcc
Q 004044 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE----SRCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~----~~CP~C 387 (777)
|+||++.|. .|++++|||+||..||..|.... ..||+|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999998 78999999999999999887643 359998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.65 E-value=1.3e-08 Score=81.36 Aligned_cols=46 Identities=30% Similarity=0.777 Sum_probs=39.2
Q ss_pred cccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|+||++... ..++.+|||. ||..|+..|......||+||+++..
T Consensus 3 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPR----DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCC----ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 67999999865 4688889999 9999999999988899999998764
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.5e-09 Score=101.30 Aligned_cols=50 Identities=28% Similarity=0.713 Sum_probs=43.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
.-..|||||+.+... .++.+.|||+||..||...+.....||+|++.++.
T Consensus 130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 347899999998754 56778899999999999999999999999987654
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.61 E-value=2.6e-08 Score=86.14 Aligned_cols=46 Identities=33% Similarity=0.811 Sum_probs=35.6
Q ss_pred Cccccccccccccc---------ccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 343 KQVCGICLSEEDKR---------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 343 ~~~C~ICle~~~~~---------~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
...|+||++.|... .-..++..|+|.||..||..|+....+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999988322 11235567999999999999999999999997
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.60 E-value=2.5e-08 Score=75.73 Aligned_cols=38 Identities=37% Similarity=0.976 Sum_probs=32.3
Q ss_pred cccccccccccccce-eecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 346 CGICLSEEDKRRLRG-TLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~-~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
|+||++.+. .+ ++++|||+||..||..|+....+||+|
T Consensus 1 C~iC~~~~~----~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR----DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S----SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc----CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999887 35 678899999999999999888889998
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-08 Score=103.03 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=41.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (777)
..+.|-|||+.-. .||++.|||.||+.||.+|++.+ ..||+|+..+..
T Consensus 46 ~~FdCNICLd~ak----dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAK----DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccC----CCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 4578999999877 68999999999999999999864 349999987755
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.2e-08 Score=107.04 Aligned_cols=50 Identities=36% Similarity=0.798 Sum_probs=42.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCC-CCccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFKTI 394 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~-CP~CR~~~~~i 394 (777)
.+|.|||+.|..+....+|+ |.|.||..||..|+....+ ||+|++.+...
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 58999999999887777755 9999999999999987644 99998865443
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.47 E-value=4.1e-08 Score=101.93 Aligned_cols=51 Identities=37% Similarity=0.815 Sum_probs=47.5
Q ss_pred cCCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 434 YENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 434 ~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
+++..|.+|+...+...+|||+.|+++||+|||.|| .+.|+|.|-|.-|..
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 467899999999999999999999999999999999 889999999999964
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.45 E-value=1.4e-07 Score=78.29 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=40.4
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
+.|+||++.+. .|++.+|||+||+.||..|+....+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~----~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK----DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC----CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 57999999987 5788899999999999999988888999998763
No 18
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-07 Score=99.74 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=41.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~ 392 (777)
.+..|.|||+.|...... +.+||.|.||..||.+|+. .+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~-~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRL-RVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceE-EEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 457899999998755544 4455999999999999998 7788999997764
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.39 E-value=2.2e-07 Score=70.67 Aligned_cols=43 Identities=42% Similarity=0.944 Sum_probs=35.1
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCccccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQR 390 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~ 390 (777)
.|+||++.+.. ..++++|+|.||..|+..|+.. ...||+|+..
T Consensus 1 ~C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC---ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999998831 3455669999999999999987 6779999865
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.38 E-value=2.1e-07 Score=71.04 Aligned_cols=38 Identities=39% Similarity=1.012 Sum_probs=32.5
Q ss_pred ccccccccccccccee-ecCCCCcccHhhHHHHHh--cCCCCCcc
Q 004044 346 CGICLSEEDKRRLRGT-LNCCSHYFCFTCIMEWSK--VESRCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~~-l~~C~H~FC~~CI~~w~~--~~~~CP~C 387 (777)
|+||++.+. .++ +++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~----~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE----DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS----SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc----CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987 345 888999999999999988 44569998
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.34 E-value=3e-07 Score=71.70 Aligned_cols=44 Identities=30% Similarity=0.869 Sum_probs=36.5
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
.|+||+..+. ....+++++|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999993 3335888999999999999998855677999974
No 22
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.33 E-value=1.5e-07 Score=100.36 Aligned_cols=50 Identities=28% Similarity=0.633 Sum_probs=45.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.-+.|.||+++|. +|++++|+|+||--||..++.....||+|+.+|+...
T Consensus 22 ~lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 22 DLLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHhHHHHHhc----CceeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 3478999999998 7899999999999999999999999999999887643
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=2.6e-07 Score=103.21 Aligned_cols=48 Identities=33% Similarity=0.690 Sum_probs=42.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+.|+||++.|. .+++++|+|+||..||..|+.....||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~----~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD----VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh----CccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3478999999987 57888999999999999999887889999998764
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.7e-07 Score=97.08 Aligned_cols=54 Identities=20% Similarity=0.599 Sum_probs=42.8
Q ss_pred cCCccccccccc-cccc--------ccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 341 VAKQVCGICLSE-EDKR--------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 341 ~~~~~C~ICle~-~~~~--------~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
..+..|.|||+. +... ...|.-++|||.||..|+..|++.+.+||+||.++-.-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 356789999997 4322 22345577999999999999999999999999985443
No 25
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.27 E-value=3e-07 Score=96.16 Aligned_cols=50 Identities=40% Similarity=0.937 Sum_probs=43.9
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCCCCCCCCCcccc-CCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCD-GCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~-~C~~~ 485 (777)
++..|.+|+....+..++|||.|+++||++|+++. .+|.|.|.|. .|...
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~-~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQ-DLPRGEWICDMRCREA 363 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCccccccc-cccCccchhhhHHHHh
Confidence 45678999999888899999999999999999986 8999999998 46553
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.16 E-value=1.1e-06 Score=68.43 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=22.6
Q ss_pred cccccccccccccceeecCCCCcccHhhHHHHHhcC
Q 004044 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE 381 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~ 381 (777)
|+||++ |......|++++|||+||..||.+++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 999999 76555568888899999999999998743
No 27
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.16 E-value=1.3e-06 Score=64.05 Aligned_cols=38 Identities=42% Similarity=1.047 Sum_probs=32.1
Q ss_pred cccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcc
Q 004044 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~C 387 (777)
|+||++... .+++++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999854 467777999999999999988 55679987
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8e-07 Score=100.08 Aligned_cols=47 Identities=28% Similarity=0.759 Sum_probs=37.8
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcC-----CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-----SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~-----~~CP~CR~~~~~ 393 (777)
+..|||||+... .++++.|||+||..||..++... ..||+|+..++.
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 578999999865 67888899999999998755432 459999877654
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.16 E-value=1.1e-06 Score=77.71 Aligned_cols=50 Identities=36% Similarity=0.847 Sum_probs=37.8
Q ss_pred Ccccccccccccccccc--------e-eecCCCCcccHhhHHHHHhc---CCCCCccccccc
Q 004044 343 KQVCGICLSEEDKRRLR--------G-TLNCCSHYFCFTCIMEWSKV---ESRCPLCKQRFK 392 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~--------~-~l~~C~H~FC~~CI~~w~~~---~~~CP~CR~~~~ 392 (777)
+..|+||...|...-+. | ++-.|+|.||..||.+|+.. ...||+||+.+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 57899999888643221 2 33459999999999999975 356999998764
No 30
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.13 E-value=1.4e-06 Score=106.39 Aligned_cols=127 Identities=17% Similarity=0.314 Sum_probs=79.9
Q ss_pred CCcccccCcCCCCC--cccccccccccccccccccCCCCCCCCCccccCCCCCCCCC--------CCCCCCCCCcccccc
Q 004044 435 ENVICSECHQGGDD--GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALGS--------SSSQAQDPLPDLRTA 504 (777)
Q Consensus 435 e~~~C~vC~~~~~~--~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~~~g~--------~~~~~~~~~~~~~~~ 504 (777)
.+.+|.+|..+... +.+++||.|+.++|.+|++.| .+|+|.|+|..|.....+. ..+...+...+.|.+
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~-~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~H 296 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP-FIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWAH 296 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCC-CCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCceee
Confidence 45799999998654 789999999999999999976 7999999999998653222 222333444444542
Q ss_pred c-------cccCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCCCccccCccccCCCCCCCCCccccccchhhhhhhh
Q 004044 505 S-------TNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAASPGSGAGAPTLTGRRWIHRHIQN 577 (777)
Q Consensus 505 ~-------~~~f~~p~~~~~~~e~ldp~~~~s~R~~~~~~~~~l~s~~~~~~d~~~~S~~s~~g~~t~~~~r~lhr~i~~ 577 (777)
. ..+|.....+-++. .....+..|....+.++-. +-.|+|||+. -..|..|+|+.|.-
T Consensus 297 v~caiwipev~F~nt~~~E~I~---~i~~i~~aRwkL~cy~cK~---~~~gaciqcs---------~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 297 VVCAIWIPEVSFANTVFLEPID---SIENIPPARWKLTCYICKQ---KGLGACIQCS---------KANCYTAFHVTCAR 361 (1051)
T ss_pred eehhhcccccccccchhhcccc---chhcCcHhhhhceeeeecc---CCCCcceecc---------hhhhhhhhhhhhHh
Confidence 2 22233332222211 0112334555555554433 3367888883 24677899999854
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-06 Score=91.22 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=37.6
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
.....|+||++.|. .+++++|+|+||..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~----~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR----EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh----cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 35588999999998 4578889999999999987665566999994
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.08 E-value=1.3e-06 Score=91.71 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=43.9
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
+.|-||-..|. ++++++|||+||.-||..++..+..||+||..+....
T Consensus 26 lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 26 LRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred HHhhhhhheee----cceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 67999999997 7899999999999999999999999999999877654
No 33
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.07 E-value=6.9e-07 Score=71.44 Aligned_cols=47 Identities=47% Similarity=1.140 Sum_probs=40.3
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-C--CCCCCCccccCCCC
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-R--VVPEGNWYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~--~vP~g~W~C~~C~~ 484 (777)
+|.+|+.......|+.|+.|..+||..|++|+ . .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899998888889999999999999999998 3 44556999999864
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.02 E-value=1.8e-06 Score=95.50 Aligned_cols=45 Identities=29% Similarity=0.767 Sum_probs=35.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
+-.+|||||+.+.......+...|.|.||..|+..|... +||+||
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--scpvcR 218 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--SCPVCR 218 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--cChhhh
Confidence 447899999988654333344669999999999999664 599997
No 35
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.2e-06 Score=89.67 Aligned_cols=47 Identities=34% Similarity=0.942 Sum_probs=39.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHH-HHhcCCC-CCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME-WSKVESR-CPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~-w~~~~~~-CP~CR~~~~ 392 (777)
.+..|+||++... .+...+|||+||..||.. |-....- ||+||+.+.
T Consensus 214 ~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccC----CcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 4578999999876 678888999999999998 9876554 999998753
No 36
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.92 E-value=2.9e-06 Score=97.49 Aligned_cols=49 Identities=31% Similarity=0.763 Sum_probs=44.8
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC---CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG---RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp---~~vP~g~W~C~~C~~~ 485 (777)
.+|..|+..+.-..+++|++|.++||++||.|| ..+|.|.|+|+.|...
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 599999998876667999999999999999999 7899999999999875
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.91 E-value=6.3e-06 Score=71.26 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=37.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (777)
.+.|+||++.+. .|++.+|||+|++.||..|+.. ..+||+|+.++..
T Consensus 4 ~f~CpIt~~lM~----dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMR----DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-S----SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhh----CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 478999999987 7899999999999999999998 7889999887765
No 38
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=8.3e-06 Score=88.09 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=37.1
Q ss_pred CCccccccccc--ccccccceeecCCCCcccHhhHHH-HHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSE--EDKRRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~--~~~~~~~~~l~~C~H~FC~~CI~~-w~~~~~~CP~CR~~~~~i 394 (777)
.+..||||+.. +.+... -++..|||.||..||.. |......||+|+..+...
T Consensus 2 d~~~CP~Ck~~~y~np~~k-l~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLK-LMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccc-cccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 34689999994 332211 12236999999999997 555566799999877654
No 39
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.5e-06 Score=96.54 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=39.7
Q ss_pred CCccccccccccccccc-ceeecCCCCcccHhhHHHHHhcCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRL-RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~-~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
....|+||++.+..... .+..++|+|.||..|+..|++...+||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 46789999998763211 1455669999999999999999999999998
No 41
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.76 E-value=7.8e-06 Score=91.05 Aligned_cols=67 Identities=25% Similarity=0.597 Sum_probs=51.8
Q ss_pred CcccccCcCCCC--CcccccccccccccccccccCCCCCCCCCccccCCCCCC--------CCCCCCCCCCCCccccc
Q 004044 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA--------LGSSSSQAQDPLPDLRT 503 (777)
Q Consensus 436 ~~~C~vC~~~~~--~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~~--------~g~~~~~~~~~~~~~~~ 503 (777)
+..|.+|..+.. .+.+++|++|+.+.|..|.+++ .+|+|.|+|..|..+. |.++.+...+...+.|.
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~-f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ-FLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccce-ecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchH
Confidence 478999988754 4579999999999999999998 9999999999997642 23333344455566665
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.4e-05 Score=87.98 Aligned_cols=55 Identities=29% Similarity=0.848 Sum_probs=42.8
Q ss_pred Ccccccccccccccc----cceeecCCCCcccHhhHHHHHh--c-----CCCCCcccccccccccC
Q 004044 343 KQVCGICLSEEDKRR----LRGTLNCCSHYFCFTCIMEWSK--V-----ESRCPLCKQRFKTITKP 397 (777)
Q Consensus 343 ~~~C~ICle~~~~~~----~~~~l~~C~H~FC~~CI~~w~~--~-----~~~CP~CR~~~~~i~~~ 397 (777)
..+|+|||+.+.... ..++|++|.|.||..||..|.. . ...||.||.....+...
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 468999999875321 1467799999999999999984 3 35699999887776644
No 43
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.68 E-value=1.7e-05 Score=91.39 Aligned_cols=47 Identities=30% Similarity=0.839 Sum_probs=40.1
Q ss_pred cccccCcCCC--CCcccccccc--cccccccccccCCCCCCCCCccccCCCC
Q 004044 437 VICSECHQGG--DDGLMLLCDI--CDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~--~~~~lllCd~--Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
.-|.||-... .++.++|||+ |..+.|..|+++- +||.|.|||.+|..
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv-qVPtGpWfCrKCes 56 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV-QVPTGPWFCRKCES 56 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeE-ecCCCchhhhhhhh
Confidence 5689997653 3668999997 8899999999997 89999999999953
No 44
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.62 E-value=3.2e-05 Score=91.64 Aligned_cols=87 Identities=31% Similarity=0.720 Sum_probs=62.2
Q ss_pred CCCcccHhhHHHHHhc----CCCCCcccccccccccCCCCcCcccccceeecccCCCcccCCCchhhccccCCcCCcccc
Q 004044 365 CSHYFCFTCIMEWSKV----ESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICS 440 (777)
Q Consensus 365 C~H~FC~~CI~~w~~~----~~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~erdq~~~~~eEel~s~ld~~e~~~C~ 440 (777)
|...+|+.|+..-++. ..+||.|-... .++...+..|. . -+...|.
T Consensus 2 ~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~-------------------~~~~~~~~~~~----------~-~~~e~c~ 51 (696)
T KOG0383|consen 2 CPRAYHRVCLDPKLKEEPEMDPKCPGCESSS-------------------AQVEAKDDDWD----------D-AEQEACR 51 (696)
T ss_pred CCcccCcCCCCcccccCCcCCccCcchhhcc-------------------cccccccCCcc----------h-hhhhhhh
Confidence 6677888888755442 35699884332 22222222111 1 1346899
Q ss_pred cCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 441 ECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 441 vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
+|..++. +++|+.|..+||.+|+++| ..+|.+.|.|+.|..
T Consensus 52 ic~~~g~---~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 52 ICADGGE---LLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhcCCCc---EEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 9999887 9999999999999999998 888888899999943
No 45
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=1.9e-05 Score=67.88 Aligned_cols=51 Identities=31% Similarity=0.771 Sum_probs=37.6
Q ss_pred Ccccccccccccccccceee---------cCCCCcccHhhHHHHHhcC---CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTL---------NCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l---------~~C~H~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (777)
+.+|.||.-.|...-+...+ -.|.|.||..||.+|+... ..||+||+.+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 45899999888654332222 2389999999999998643 459999987743
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.61 E-value=3.7e-05 Score=66.68 Aligned_cols=50 Identities=28% Similarity=0.583 Sum_probs=36.7
Q ss_pred ccccccccccccc-----------ccce-eecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKR-----------RLRG-TLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~-----------~~~~-~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
.+|+||...|... ..-+ +.-.|+|.||..||.+|+...+.||+||+++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 5677777655322 1111 223499999999999999999999999988754
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=8.5e-06 Score=88.15 Aligned_cols=50 Identities=34% Similarity=0.774 Sum_probs=39.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~i 394 (777)
..+.|+|||+.+... .+..-|.|.||+.||...+.. .+.||.||+.+-.-
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 347899999999743 344569999999999877654 46799999987553
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.2e-05 Score=86.45 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=37.2
Q ss_pred ccccccccccccc------cc-------ceeecCCCCcccHhhHHHHHh-cCCCCCccccccc
Q 004044 344 QVCGICLSEEDKR------RL-------RGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFK 392 (777)
Q Consensus 344 ~~C~ICle~~~~~------~~-------~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~ 392 (777)
..|+|||..+.-. +. .-++.||.|+||..|+.+|+. .+..||+||+++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4699999875321 00 125568999999999999999 4558999998874
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=2.6e-05 Score=91.91 Aligned_cols=48 Identities=23% Similarity=0.655 Sum_probs=39.6
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFK 392 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~ 392 (777)
..-+.|++|-..+. ..+++.|+|+||..||..-.. ...+||.|.+.|.
T Consensus 641 K~~LkCs~Cn~R~K----d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWK----DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchh----hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45588999998876 568888999999999996554 5677999998884
No 50
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.51 E-value=6.6e-05 Score=73.17 Aligned_cols=28 Identities=32% Similarity=0.711 Sum_probs=25.4
Q ss_pred ccccccccCC-CCCCCCCccccCCCCCCC
Q 004044 460 SAHTYCVGLG-RVVPEGNWYCDGCRPVAL 487 (777)
Q Consensus 460 s~H~~CL~pp-~~vP~g~W~C~~C~~~~~ 487 (777)
+||++||.|| ..+|.|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 5999999999 999999999999998633
No 51
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.34 E-value=6.5e-05 Score=89.02 Aligned_cols=51 Identities=27% Similarity=0.674 Sum_probs=38.9
Q ss_pred Cccccccccccc---ccccceeecCCCCcccHhhHHHHHhcC--CCCCcccccccc
Q 004044 343 KQVCGICLSEED---KRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~---~~~~~~~l~~C~H~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (777)
-..|+||+..+. ...+-..++.|.|.||..|+-+|...+ ++||+||..++.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 356999999764 222334556699999999999999864 569999977654
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.32 E-value=5.9e-05 Score=64.87 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=23.8
Q ss_pred ccccccccccccc--ccceeec--CCCCcccHhhHHHHHhcC-----------CCCCcccccccc
Q 004044 344 QVCGICLSEEDKR--RLRGTLN--CCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~--~~~~~l~--~C~H~FC~~CI~~w~~~~-----------~~CP~CR~~~~~ 393 (777)
..|+||+..+... .+..+.. .|++.||..||..|+... ..||.|+.++..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5799999986522 2233333 699999999999998521 239999987754
No 53
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=97.25 E-value=0.00037 Score=86.58 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=116.7
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC-------CCCCCCC------CCCCCCcc
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV-------ALGSSSS------QAQDPLPD 500 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~-------~~g~~~~------~~~~~~~~ 500 (777)
....|..|.++.....+ +|+.|...+|.+|+.++ ..++.+.|.|+.|... ..||..+ ..|+.+++
T Consensus 154 ~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~ 232 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYAD 232 (904)
T ss_pred cchhhhccccCCCccce-ecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhh
Confidence 44688999998877445 99999999999999998 8899999999999865 3344433 34566666
Q ss_pred ccccccccCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCCCC------CccccCccccCCCCCCCCCcc---cc-----
Q 004044 501 LRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSS------PRFTVGDVQAASPGSGAGAPT---LT----- 566 (777)
Q Consensus 501 ~~~~~~~~f~~p~~~~~~~e~ldp~~~~s~R~~~~~~~~~l~s------~~~~~~d~~~~S~~s~~g~~t---~~----- 566 (777)
.++ ..||.++....+.. ..+...||+++. ...||++++....+++..... ..
T Consensus 233 ~~~--~~~~~~~~~~~~~~------------~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~ 298 (904)
T KOG1246|consen 233 NFK--KDYFPKSKNSPDST------------EDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAE 298 (904)
T ss_pred hhh--ccccccccCCCCch------------HHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchh
Confidence 655 57777766654420 012334444333 235788877777666322211 11
Q ss_pred --------------ccchhhhhhhhhhhhcccccCCCcccCcccCccccccccchhhccccCCCCCCC----ccccchhH
Q 004044 567 --------------GRRWIHRHIQNLLSMNRMNFMSGNNDGMPTANLNSENFNSQLDQGRETVVQPAR----GQETEPLH 628 (777)
Q Consensus 567 --------------~~r~lhr~i~~l~s~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~s~ 628 (777)
....+-.|+...++++ ++||.|+||--...| |-..-.-....+.+++- ...|..+.
T Consensus 299 ~y~~s~wnL~~i~~~~~svl~~~~~di~g~---~~p~l~~gm~fs~~~---wh~ed~~~~slny~h~g~pk~wy~v~~~~ 372 (904)
T KOG1246|consen 299 KYSNSGWNLNNIPRLEGSVLSHIDTDISGV---TVPWLYIGMCFSTFC---WHVEDHSLYSLNYLHLGEPKTWYSVPGSA 372 (904)
T ss_pred hhccCcccccccccCCccccccccCCcCcc---ccccccccccccccc---cccCCccccccchhhcCCceEEEecCcch
Confidence 1123444555555666 889999999887755 43321111222222222 22234478
Q ss_pred HHHHHhhhccCCCCccc
Q 004044 629 QAIFEERSHDHPTSLVE 645 (777)
Q Consensus 629 ~~~~~~~~~~~~~~~~~ 645 (777)
.+-|+..|..+..-+|.
T Consensus 373 ae~~e~~~~~~~p~~~~ 389 (904)
T KOG1246|consen 373 AEKFEKAMNKLSPGLFI 389 (904)
T ss_pred HHHHHHHHHhhCCcccc
Confidence 88889988877754443
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.25 E-value=5.3e-05 Score=81.71 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=42.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITK 396 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~ 396 (777)
.-.+|.+|-.+|... .+++-|.|+||..||..++....+||.|...++...+
T Consensus 14 ~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred cceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 346899999998643 2334599999999999999999999999988877653
No 55
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00014 Score=77.60 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=38.5
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~i 394 (777)
...|+||+..-. .|+.+.|+|.||+-||..-... ...||+||.+|..-
T Consensus 7 ~~eC~IC~nt~n----~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGN----CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCC----cCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 357999998754 6788899999999999965444 45599999998763
No 56
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.16 E-value=0.0001 Score=93.86 Aligned_cols=52 Identities=38% Similarity=0.880 Sum_probs=48.0
Q ss_pred cCCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 434 YENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 434 ~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
.....|.+|....+...|++|+.|..++|++|+.|. ..+|.++|+||.|+..
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 456899999999988899999999999999999998 8999999999999874
No 57
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.16 E-value=0.00014 Score=61.04 Aligned_cols=43 Identities=33% Similarity=0.772 Sum_probs=22.6
Q ss_pred Cccccccccccccccccee-ecCCCCcccHhhHHHHHhcCCCCCcccccc
Q 004044 343 KQVCGICLSEEDKRRLRGT-LNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~-l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~ 391 (777)
-+.|+||.+.+. .|+ +..|.|.||..||..-+. ..||+|+.+.
T Consensus 7 lLrCs~C~~~l~----~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILK----EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--S----S-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred hcCCcHHHHHhc----CCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 478999999987 565 577999999999976444 3499997654
No 58
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.11 E-value=0.00018 Score=77.56 Aligned_cols=36 Identities=44% Similarity=1.029 Sum_probs=32.3
Q ss_pred cccccccc--cc-cccccccccCCCCCCCCCccccCCCCC
Q 004044 449 GLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 449 ~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
+.|+-||. |. .+||+.|+++. ..|.|.|||+.|...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEeccccc-cCCCCcccchhhhhh
Confidence 44999998 99 99999999996 789999999999874
No 59
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00011 Score=59.38 Aligned_cols=50 Identities=26% Similarity=0.751 Sum_probs=39.6
Q ss_pred CcccccccccccccccceeecCCCCc-ccHhhHHH-HHhcCCCCCccccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIME-WSKVESRCPLCKQRFKTITK 396 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~-w~~~~~~CP~CR~~~~~i~~ 396 (777)
...|+||++.-. ..+|-.|||. .|+.|-.+ |.-....||+||+++..+.+
T Consensus 7 ~dECTICye~pv----dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 7 SDECTICYEHPV----DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIK 58 (62)
T ss_pred ccceeeeccCcc----hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHH
Confidence 367999999643 4678779998 99999774 55577889999999877654
No 60
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.07 E-value=0.0004 Score=55.64 Aligned_cols=42 Identities=29% Similarity=0.795 Sum_probs=31.2
Q ss_pred ccccccccccccccceeecCCC-----CcccHhhHHHHHhcC--CCCCccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--SRCPLCK 388 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~~--~~CP~CR 388 (777)
.|.||++..... .+++.||. |+||..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~--~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEG--DPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCC--CeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 499999833222 45566674 899999999999654 4799994
No 61
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00043 Score=62.95 Aligned_cols=29 Identities=38% Similarity=0.968 Sum_probs=25.8
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCcccccc
Q 004044 363 NCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (777)
Q Consensus 363 ~~C~H~FC~~CI~~w~~~~~~CP~CR~~~ 391 (777)
--|+|.||+-||.+|++..+.||+|.+.-
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 34999999999999999999999997653
No 62
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.94 E-value=0.00044 Score=80.81 Aligned_cols=49 Identities=39% Similarity=0.929 Sum_probs=43.5
Q ss_pred CCcccccCcCCCC--CcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~--~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
++..|.+|..++. .+.|+||+.|..-.|..|.++. .+|.+.|.|..|.-
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIl-e~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGIL-EVPEGPWLCRTCAL 320 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhcee-ecCCCCeeehhccc
Confidence 6789999998754 4579999999999999999997 89999999999964
No 63
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.00071 Score=76.73 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=74.5
Q ss_pred CCccccccccccccc-ccceeecCCCCcccHhhHHHHHhc--CCCCCcccccccccccCCCCcCcccccceeecccCCCc
Q 004044 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQ 418 (777)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~C~H~FC~~CI~~w~~~--~~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~erdq 418 (777)
....|.||....... ....+...|++-||..|-..-... ...|--|..++....-.. ...+...+ .++..+....
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a-~K~g~~a~-~~l~y~~~~l 159 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGA-LKKGRLAR-PSLPYPEASL 159 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccc-cccccccc-ccccCccccc
Confidence 346799998864321 122334558888888886543322 123444766654433111 00010000 1112222111
Q ss_pred ccCCCchhhccccCCcCCcccccCcCCC--CCcccccccccccccccccccCC-----CCCCCCCccccCCCCC
Q 004044 419 VYQPSEEDLRSFLDPYENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLG-----RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 419 ~~~~~eEel~s~ld~~e~~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp-----~~vP~g~W~C~~C~~~ 485 (777)
.|. ..+..+..|.+|..++ .-+.||.|+.|..+||..|..|+ ..-|...|||..|...
T Consensus 160 ~wD---------~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 160 DWD---------SGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccC---------ccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 111 1122335588987653 34489999999999999999987 2234668999999876
No 64
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0007 Score=74.03 Aligned_cols=50 Identities=28% Similarity=0.679 Sum_probs=41.5
Q ss_pred CCcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.+..|.|||+... ..+++||.|. .|..|.....-+++.||+||+++....
T Consensus 289 ~gkeCVIClse~r----dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 289 SGKECVICLSESR----DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred CCCeeEEEecCCc----ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 3568999999876 4577889999 999999987777888999999986643
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00062 Score=74.68 Aligned_cols=47 Identities=28% Similarity=0.825 Sum_probs=35.2
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~CR~~ 390 (777)
-.|.||-+.+.......-+-.|||+||..|+..|+... ..||+|+-.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 46999977665444344444599999999999999864 359999943
No 66
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.71 E-value=0.0012 Score=74.32 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=43.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC-CCCCCCC----ccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGN----WYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~----W~C~~C~~ 484 (777)
..-|.+|.+..+...++.|+.|...||+-||+|| +.+|..+ |.|..|..
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 4689999999888889999999999999999999 7788654 99999943
No 67
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.00099 Score=74.99 Aligned_cols=49 Identities=24% Similarity=0.677 Sum_probs=42.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
..+.|.||+..+. .++.++|||.||..||.+-+.....||+||..+...
T Consensus 83 sef~c~vc~~~l~----~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 83 SEFECCVCSRALY----PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred chhhhhhhHhhcC----CCccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 4578999999887 577789999999999999888778899999998763
No 68
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0011 Score=69.65 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=37.3
Q ss_pred CCcccccccccccccc-c-----ceeecCCCCcccHhhHHHHHhc--CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRR-L-----RGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~-~-----~~~l~~C~H~FC~~CI~~w~~~--~~~CP~CR~~~~~ 393 (777)
.+..|.||-..+.... . ....++|+|+||-.||..|... ..+||.|+.++..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4568999988764221 0 1233679999999999999764 5679999877543
No 69
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0019 Score=71.41 Aligned_cols=53 Identities=28% Similarity=0.594 Sum_probs=39.4
Q ss_pred CCcccccccccccc-cccceeecCCCCcccHhhHHHHHhc--CCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l~~C~H~FC~~CI~~w~~~--~~~CP~CR~~~~~i 394 (777)
...+|||||+.+.- +....+.+.|+|.|.-.||.+|+.. ...||+|...-+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 35789999998753 3334455779999999999999952 34599997765443
No 70
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.26 E-value=0.0014 Score=66.05 Aligned_cols=51 Identities=24% Similarity=0.557 Sum_probs=42.4
Q ss_pred hcCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 340 ~~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
+.-.+.|.||-..|. -|+.+.|||.||-.|..+-.+....|-+|.+.....
T Consensus 193 e~IPF~C~iCKkdy~----spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 193 EKIPFLCGICKKDYE----SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred CCCceeehhchhhcc----chhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 345678999999987 578888999999999988777778899998765543
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0016 Score=69.58 Aligned_cols=51 Identities=25% Similarity=0.510 Sum_probs=44.0
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.-++.|.||...|. .||...|+|+||..|-..-++....|++|.+.++.+.
T Consensus 239 ~~Pf~c~icr~~f~----~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFY----RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccc----cchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 34577999999997 6899999999999999988888888999988877765
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.20 E-value=0.0021 Score=72.74 Aligned_cols=51 Identities=27% Similarity=0.727 Sum_probs=43.0
Q ss_pred CCcccccccccccccccceee-cCCCCcccHhhHHHHHhcCCCCCccccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITK 396 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~ 396 (777)
....|+||+.++. .|+. ..|+|.||..||..|+.....||.|+...+....
T Consensus 20 ~~l~C~~C~~vl~----~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLR----DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCcccccccc----CCCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 3478999999987 4666 4799999999999999998899999888766543
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0011 Score=73.60 Aligned_cols=110 Identities=22% Similarity=0.434 Sum_probs=61.4
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhc--------CCCCCcccccccccccCCCCcCccccccee-eccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPLCKQRFKTITKPERSTAGVDLRSVV-IQVP 414 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~--------~~~CP~CR~~~~~i~~~~~~~~~~~~~e~l-iqv~ 414 (777)
..|.||++... +....+.++|+|+||..|+..+... ...||.|..+-....- .++++| ..+-
T Consensus 185 f~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g--------~vKelvg~EL~ 255 (445)
T KOG1814|consen 185 FDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG--------QVKELVGDELF 255 (445)
T ss_pred ccceeeehhhc-CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch--------HHHHHHHHHHH
Confidence 56999999864 3334566789999999999977642 2459988765322221 111111 0000
Q ss_pred CCCcccCC--CchhhccccCCcCCccccc--CcCC---CCCcccccccccccccccccccC
Q 004044 415 ERDQVYQP--SEEDLRSFLDPYENVICSE--CHQG---GDDGLMLLCDICDSSAHTYCVGL 468 (777)
Q Consensus 415 erdq~~~~--~eEel~s~ld~~e~~~C~v--C~~~---~~~~~lllCd~Cd~s~H~~CL~p 468 (777)
+| |.. ..-.+..+. +..+|.. |... +....|..|..|+-+||+.|..-
T Consensus 256 ar---Ye~l~lqk~l~~ms---dv~yCPr~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t 310 (445)
T KOG1814|consen 256 AR---YEKLMLQKTLELMS---DVVYCPRACCQLPVKQDPGRALAICSKCNFAFCTLCKLT 310 (445)
T ss_pred HH---HHHHHHHHHHHhhc---ccccCChhhccCccccCchhhhhhhccCccHHHHHHHHh
Confidence 00 000 001111121 2245555 4433 23346889999999999988764
No 74
>PHA03096 p28-like protein; Provisional
Probab=95.94 E-value=0.002 Score=69.70 Aligned_cols=46 Identities=28% Similarity=0.619 Sum_probs=34.2
Q ss_pred cccccccccccc----cccceeecCCCCcccHhhHHHHHhcC---CCCCcccc
Q 004044 344 QVCGICLSEEDK----RRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQ 389 (777)
Q Consensus 344 ~~C~ICle~~~~----~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~CR~ 389 (777)
-.|.|||+.+.. ....++|..|.|.||..||..|.... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 579999997542 23467889999999999999998643 33555543
No 75
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.76 E-value=0.0042 Score=65.15 Aligned_cols=42 Identities=43% Similarity=0.953 Sum_probs=34.3
Q ss_pred cCcCCCCCcccccccc--cc-cccccccccCCCCCCCCCccccCCCC
Q 004044 441 ECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 441 vC~~~~~~~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
-|.+... +.|+-||+ |. .+||+.|+++. ..|.|.|||+.|..
T Consensus 225 fCqqvSy-GqMVaCDn~nCkrEWFH~~CVGLk-~pPKG~WYC~eCk~ 269 (271)
T COG5034 225 FCQQVSY-GQMVACDNANCKREWFHLECVGLK-EPPKGKWYCPECKK 269 (271)
T ss_pred Eeccccc-ccceecCCCCCchhheeccccccC-CCCCCcEeCHHhHh
Confidence 5666533 45999997 87 67999999986 88999999999974
No 76
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.74 E-value=0.0076 Score=49.91 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=27.8
Q ss_pred cCCcccccccccccccccceee-cCCCCcccHhhHHHHHhc--CCCCCc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKV--ESRCPL 386 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~--~~~CP~ 386 (777)
...+.|||.+..|. .|+. ..|+|+|.+..|..|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~----~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE----DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S----SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh----CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34588999999987 5666 479999999999999943 345998
No 77
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.65 E-value=0.0045 Score=68.20 Aligned_cols=47 Identities=26% Similarity=0.858 Sum_probs=37.6
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhc--CCCCCcccccccccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKTIT 395 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~--~~~CP~CR~~~~~i~ 395 (777)
-|-||-+.-. ...+.+|||..|..|+..|... ..+||.||+.+....
T Consensus 371 LCKICaendK----dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDK----DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCC----CcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4999998644 3466779999999999999854 467999999876643
No 78
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.53 E-value=0.0048 Score=70.00 Aligned_cols=48 Identities=27% Similarity=0.731 Sum_probs=37.9
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhc-----CCCCCccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-----ESRCPLCKQRFK 392 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-----~~~CP~CR~~~~ 392 (777)
.....|.+|-+.-. ..+...|.|+||+.||..+... ..+||+|-..++
T Consensus 534 k~~~~C~lc~d~ae----d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE----DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhh----hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 44567999999866 5677889999999999888653 356999976654
No 79
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0085 Score=63.52 Aligned_cols=50 Identities=22% Similarity=0.648 Sum_probs=36.4
Q ss_pred CCcccccccccccccccceee-cCCCCcccHhhHHHHHh--cCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSK--VESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~--~~~~CP~CR~~~~~i~ 395 (777)
.+.+|++|-+.-. .|.. .+|+|.||.-||..-.. .+-+||.|..+...+.
T Consensus 238 ~~~~C~~Cg~~Pt----iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 238 SDTECPVCGEPPT----IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred CCceeeccCCCCC----CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 4478999998754 3444 55999999999986544 3457999987765443
No 80
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.40 E-value=0.006 Score=75.23 Aligned_cols=53 Identities=28% Similarity=0.605 Sum_probs=38.6
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcC----------CCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE----------SRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~----------~~CP~CR~~~~~i~ 395 (777)
.+..|.||+-.--... ..+.+.|+|.||+.|...-+++. -+||+|..++.++.
T Consensus 3485 ~DDmCmICFTE~L~AA-P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAA-PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cCceEEEEehhhhCCC-cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 4578999997643332 24556799999999998655543 34999999988764
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.38 E-value=0.011 Score=63.36 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=42.4
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
.....|||....|........+-+|||+|+..+|.... ....||+|..+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 35578999999987665566777899999999999764 45679999999874
No 82
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.37 E-value=0.0073 Score=59.94 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=35.3
Q ss_pred ccccCcC---CCCCcccccccccccccccccccCC-------CCCCCCC--ccccCCCCC
Q 004044 438 ICSECHQ---GGDDGLMLLCDICDSSAHTYCVGLG-------RVVPEGN--WYCDGCRPV 485 (777)
Q Consensus 438 ~C~vC~~---~~~~~~lllCd~Cd~s~H~~CL~pp-------~~vP~g~--W~C~~C~~~ 485 (777)
.|.+|+. ....+.|++|.+|..+||..||++. +.|...+ ..|..|+..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 4888854 3446689999999999999999975 1233344 378888764
No 83
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.012 Score=61.33 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....||||.+.+.+...-.+|-+|||+||..|+.+.+..-..||+|..++.-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 4578999999999988889999999999999999998888899999887654
No 84
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.06 E-value=0.005 Score=68.36 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=27.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
+.+.|+||...|. .|++++|+|..|..|...-+
T Consensus 3 eelkc~vc~~f~~----epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYR----EPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhcc----CceEeecccHHHHHHHHhhc
Confidence 3478999999987 67888899999999987544
No 85
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.02 E-value=0.0033 Score=47.23 Aligned_cols=34 Identities=41% Similarity=1.169 Sum_probs=19.4
Q ss_pred cccccccccccccccccccCCCCCCCC-CccccCCC
Q 004044 449 GLMLLCDICDSSAHTYCVGLGRVVPEG-NWYCDGCR 483 (777)
Q Consensus 449 ~~lllCd~Cd~s~H~~CL~pp~~vP~g-~W~C~~C~ 483 (777)
+.|+.|+.|.-..|..|.+.. .+|.+ .|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~-~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS-EVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S-S--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcc-cCCCCCcEECCcCC
Confidence 358999999999999999987 55655 79998874
No 86
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.01 E-value=0.018 Score=46.07 Aligned_cols=45 Identities=27% Similarity=0.753 Sum_probs=22.1
Q ss_pred cccccccccccccceeecC-CCCcccHhhHHHHHh-cCCCCCcccccc
Q 004044 346 CGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSK-VESRCPLCKQRF 391 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~-C~H~FC~~CI~~w~~-~~~~CP~CR~~~ 391 (777)
|++|.+.+.... ..+.+. |++.+|+.|....+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 899999884332 233333 899999999988775 467899999876
No 87
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.75 E-value=0.0088 Score=63.98 Aligned_cols=51 Identities=31% Similarity=0.738 Sum_probs=36.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh------------------c-----CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK------------------V-----ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~------------------~-----~~~CP~CR~~~~~ 393 (777)
....|.|||-.|..... -+.+.|-|+||+.|+.+++. . ...||+||.++..
T Consensus 114 p~gqCvICLygfa~~~~-ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPA-FTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCc-eeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 44679999999875533 34456999999999976642 1 1349999987643
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.72 E-value=0.017 Score=69.05 Aligned_cols=52 Identities=29% Similarity=0.622 Sum_probs=38.9
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhc-------CCCCCccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-------ESRCPLCKQRFK 392 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-------~~~CP~CR~~~~ 392 (777)
.....|.||++.+.....+=....|-|+||+.||..|+.+ .+.||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 3557899999998755333333559999999999999863 367999984443
No 89
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=94.68 E-value=0.0063 Score=55.12 Aligned_cols=16 Identities=13% Similarity=0.379 Sum_probs=10.3
Q ss_pred ccccccCCCCCCCCCC
Q 004044 44 ELEDYCSSVDGYASEE 59 (777)
Q Consensus 44 deee~~~~~~~~~~ed 59 (777)
++++....+.|||+++
T Consensus 12 DEee~~~~~eGFIvDd 27 (92)
T PF14632_consen 12 DEEEARKEREGFIVDD 27 (92)
T ss_pred CHHHHHHHhcCCccCC
Confidence 3444455789999754
No 90
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.021 Score=62.20 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=40.3
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
.++..|+||+..-- ..+..||+|.-|..||.+.+-+...|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi----~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI----NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc----hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 45678999997532 36788899999999999999998899999766544
No 91
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.86 E-value=0.029 Score=59.91 Aligned_cols=44 Identities=27% Similarity=0.636 Sum_probs=34.0
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQ 389 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~ 389 (777)
.+.|+.|-..+.+. ...++|+|.||..||...+. ....||.|..
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 37899999887633 23468999999999997654 5567999954
No 92
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.53 E-value=0.026 Score=62.29 Aligned_cols=54 Identities=24% Similarity=0.517 Sum_probs=38.7
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcC--CCCCccccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (777)
..++.|..|-+.+.-....---+||.|+||..|+...+.+. .+||.||+-...+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~ 418 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSM 418 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhc
Confidence 34578999999875332222336799999999999888654 5699999544433
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.25 E-value=0.037 Score=45.33 Aligned_cols=44 Identities=30% Similarity=0.625 Sum_probs=32.3
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|-.|...-. ..++.+|+|..|..|...+ ..+-||.|.++|..
T Consensus 8 ~~~~~~~~~~~----~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGT----KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccc----ccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 56777766543 4677789999999998754 44569999888743
No 94
>PHA02862 5L protein; Provisional
Probab=93.01 E-value=0.07 Score=51.86 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=34.7
Q ss_pred CcccccccccccccccceeecCC-----CCcccHhhHHHHHhcC--CCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCC-----SHYFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C-----~H~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (777)
...|-||++.-... ..|| ..+-|..|+.+|+..+ ..||+|+.+|...
T Consensus 2 ~diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35799999975421 2444 3579999999999754 4599999988643
No 95
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.023 Score=60.72 Aligned_cols=43 Identities=26% Similarity=0.752 Sum_probs=33.9
Q ss_pred CcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..-|.|||+... ..+++.|||. -|..|-.+. +.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~----DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPR----DCVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCc----ceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 356999999865 5788899997 788888754 379999986544
No 96
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.92 E-value=0.1 Score=62.17 Aligned_cols=55 Identities=9% Similarity=0.212 Sum_probs=36.3
Q ss_pred cccccccccccc---cccceeecCCCCcccHhhHHHHHhc------CCCCCcccccccccccCC
Q 004044 344 QVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKTITKPE 398 (777)
Q Consensus 344 ~~C~ICle~~~~---~~~~~~l~~C~H~FC~~CI~~w~~~------~~~CP~CR~~~~~i~~~~ 398 (777)
.+|.||.-.+.. ...+..+..|+|.||..||..|... .-.|+.|..-|..+....
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 345555443332 2223344559999999999999863 234999988888877554
No 97
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.049 Score=60.06 Aligned_cols=47 Identities=30% Similarity=0.800 Sum_probs=34.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
...-|.||++... ..+..+|||+-| |+.-. +.-.+||+||+.+....
T Consensus 304 ~p~lcVVcl~e~~----~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~~~ 350 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK----SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRLVR 350 (355)
T ss_pred CCCceEEecCCcc----ceeeecCCcEEE--chHHH-hhCCCCchhHHHHHHHH
Confidence 3467999999876 357778999977 77643 23344999999876654
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.58 E-value=0.063 Score=58.68 Aligned_cols=45 Identities=27% Similarity=0.710 Sum_probs=36.1
Q ss_pred CCcccccccccccccccceeecCC--CCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCC--SHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C--~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.-+.||||++.+. .|+.. | ||.-|-.|-. +..+.||.||.++..+
T Consensus 47 ~lleCPvC~~~l~----~Pi~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS----PPIFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCc----cccee-cCCCcEehhhhhh---hhcccCCccccccccH
Confidence 4478999999987 56666 8 7999999986 4456799999888754
No 99
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.79 E-value=0.066 Score=56.20 Aligned_cols=51 Identities=29% Similarity=0.616 Sum_probs=34.7
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccCC
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPE 398 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~ 398 (777)
..|.-|.-.-. ...-.|+.|+|+||..|...-. ...||+|++.+..+..+.
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccCC--ccccccccceeeeeeccc
Confidence 35777775432 2234667799999999987422 227999999977665443
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.42 E-value=0.069 Score=42.38 Aligned_cols=44 Identities=30% Similarity=0.755 Sum_probs=25.7
Q ss_pred cccccccccccccccceeecCC-CCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCC-SHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C-~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|--|+-.. .-|..| .|+.|..|+...+..+..||+|..++.+
T Consensus 3 ~nCKsCWf~~------k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFAN------KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S--------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ccChhhhhcC------CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3566676543 245558 6999999999999999999999887654
No 101
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=91.36 E-value=0.053 Score=57.48 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=43.9
Q ss_pred cccccCcCC-------CCCcccccccccccccccccccCC----CCCCCCCccccCCCCC-CCCCCCC
Q 004044 437 VICSECHQG-------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGSSSS 492 (777)
Q Consensus 437 ~~C~vC~~~-------~~~~~lllCd~Cd~s~H~~CL~pp----~~vP~g~W~C~~C~~~-~~g~~~~ 492 (777)
.+|..|-.. +.++.++.|..|+++-|..||+.. -.|-...|.|..|..+ .+|.+..
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsen 292 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEN 292 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCC
Confidence 578888543 446679999999999999999964 3455678999999988 6776644
No 102
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.14 Score=51.37 Aligned_cols=51 Identities=24% Similarity=0.549 Sum_probs=34.8
Q ss_pred ccccccccccccc-ccceee--cCCCCcccHhhHHHHHhcC-----------CCCCccccccccc
Q 004044 344 QVCGICLSEEDKR-RLRGTL--NCCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFKTI 394 (777)
Q Consensus 344 ~~C~ICle~~~~~-~~~~~l--~~C~H~FC~~CI~~w~~~~-----------~~CP~CR~~~~~i 394 (777)
..|.||+.+--.+ ...-++ ..||..||.-|+..|+..- ..||.|..++...
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4699998763222 112222 4599999999999998631 3499998877543
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.27 E-value=0.12 Score=56.41 Aligned_cols=52 Identities=19% Similarity=0.551 Sum_probs=35.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (777)
+...||.|++.+......-..-+||...|..|.....+ ....||.||..+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 34569999998764332223334899999988775444 35679999987654
No 104
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=91.20 E-value=0.091 Score=61.72 Aligned_cols=56 Identities=34% Similarity=0.799 Sum_probs=42.8
Q ss_pred CCcccccCcCCCC--CcccccccccccccccccccCC--CCCCCCCccccCCCCC-CCCCC
Q 004044 435 ENVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRPV-ALGSS 490 (777)
Q Consensus 435 e~~~C~vC~~~~~--~~~lllCd~Cd~s~H~~CL~pp--~~vP~g~W~C~~C~~~-~~g~~ 490 (777)
.+.+|.+|+..+. .+.|+.|..|..-||.||+... ..+-.+-|.|+.|+.+ .||+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~ 77 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTT 77 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecccc
Confidence 3467888887654 5579999999999999999965 2222344999999998 77744
No 105
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.11 E-value=0.15 Score=50.40 Aligned_cols=48 Identities=25% Similarity=0.632 Sum_probs=34.8
Q ss_pred CCcccccccccccccccceeecCC--CC---cccHhhHHHHHhcC--CCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCC--SH---YFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C--~H---~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (777)
.+..|-||++... ....|| .. +.|..|+.+|+..+ .+|++|+.+|...
T Consensus 7 ~~~~CRIC~~~~~-----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD-----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC-----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4568999998743 122344 34 56999999999754 5699999888664
No 106
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.52 E-value=0.21 Score=54.60 Aligned_cols=51 Identities=22% Similarity=0.601 Sum_probs=40.1
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH--HhcCCCCCccccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW--SKVESRCPLCKQRFKTITK 396 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w--~~~~~~CP~CR~~~~~i~~ 396 (777)
+...|.||-..+. +..+.||+|..|-.|-.+. +-....||+||.....+..
T Consensus 60 en~~C~ICA~~~T----Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 60 ENMNCQICAGSTT----YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccceeEEecCCce----EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 4578999999887 6778889999999998754 3455679999987665543
No 107
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.1 Score=56.23 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=32.5
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.|--|--.+. +++.+++|.|+||+.|...- ....||.|--++..|.
T Consensus 92 fCd~Cd~PI~---IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIA---IYGRMIPCKHVFCLECARSD--SDKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcce---eeecccccchhhhhhhhhcC--ccccCcCcccHHHHHH
Confidence 4666655443 36788889999999998743 3457999976665544
No 108
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.45 E-value=0.14 Score=40.80 Aligned_cols=40 Identities=28% Similarity=0.884 Sum_probs=26.4
Q ss_pred cccccccccccccceeecCCC-----CcccHhhHHHHHhc--CCCCCcc
Q 004044 346 CGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKV--ESRCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~--~~~CP~C 387 (777)
|-||++...... +++.||. .+.|..|+.+|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999865432 5666663 37899999999974 4569987
No 109
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.16 Score=55.41 Aligned_cols=46 Identities=24% Similarity=0.686 Sum_probs=36.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~ 390 (777)
....||||+-...+. .++..=|-+||..||..++...+.||+=..+
T Consensus 299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 446799999876532 4555469999999999999999999986544
No 110
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.21 E-value=0.11 Score=50.10 Aligned_cols=37 Identities=22% Similarity=0.512 Sum_probs=26.1
Q ss_pred CcccccccccccccccceeecCCC------CcccHhhHHHHHhc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCS------HYFCFTCIMEWSKV 380 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~------H~FC~~CI~~w~~~ 380 (777)
...|.||++.+.... ..+..+|+ |.||..|+.+|...
T Consensus 26 ~~EC~IC~~~I~~~~-GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNND-GVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCC-CEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 367999999987611 22333454 78999999999543
No 111
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.16 Score=54.00 Aligned_cols=137 Identities=20% Similarity=0.336 Sum_probs=73.6
Q ss_pred Ccccccccc-cccccccceeecCCCCcccHhhHHHHHh--------cC-------CCCCcccccccccccCCCCcC-ccc
Q 004044 343 KQVCGICLS-EEDKRRLRGTLNCCSHYFCFTCIMEWSK--------VE-------SRCPLCKQRFKTITKPERSTA-GVD 405 (777)
Q Consensus 343 ~~~C~ICle-~~~~~~~~~~l~~C~H~FC~~CI~~w~~--------~~-------~~CP~CR~~~~~i~~~~~~~~-~~~ 405 (777)
..+|++|+. .+.......++-+|+|.||..|..-|.. .. ..||.|+.....+........ ...
T Consensus 95 ~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~~k~t~~~h~as~~~l~~~~~~i~l~~~~~e~~~dlt~~~l~ 174 (271)
T COG5574 95 EETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSIDLKQTANTHEASPSQLLKFLPTIRLAMNIPEVISDLTAVALS 174 (271)
T ss_pred ccccccccCcccccccccceeeecccccchhhhHHHHHHHHHhhcCCCCCHHHHhccCCeeecccCChHHHHHHHHHHHh
Confidence 467999988 3322223467778999999999999976 11 237877765443321110000 000
Q ss_pred cc-ce---eecccCCC----cccCCC---chhhccccCCcCCcccccCcCCCCCcccccccccccccccccccCCCCCCC
Q 004044 406 LR-SV---VIQVPERD----QVYQPS---EEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPE 474 (777)
Q Consensus 406 ~~-e~---liqv~erd----q~~~~~---eEel~s~ld~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~ 474 (777)
+. .. +.|..... +++... .-....+.. ..+..|.+|-..-. ...|-.|+.-||+.|+-.. ...
T Consensus 175 l~~sr~~~i~q~sn~~~~~~q~Itken~s~kn~~pfip-~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~--~t~ 248 (271)
T COG5574 175 LDESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIP-LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLIS--WTK 248 (271)
T ss_pred cCchhcCccccccCCcccceeecccccccccccCCccc-ccccceeeeecccC---CcccccccchhhHHHHHHH--HHh
Confidence 01 00 11111111 111111 000111222 34567999987655 6678889999999998862 111
Q ss_pred -CCccccCCCCC
Q 004044 475 -GNWYCDGCRPV 485 (777)
Q Consensus 475 -g~W~C~~C~~~ 485 (777)
.--|||-|+..
T Consensus 249 ~k~~~CplCRak 260 (271)
T COG5574 249 KKYEFCPLCRAK 260 (271)
T ss_pred hccccCchhhhh
Confidence 22479999975
No 112
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=0.17 Score=54.99 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=37.9
Q ss_pred ccccccccccccc--ccceeecCCCCcccHhhHHHHHhcC-CCCCcccccc
Q 004044 344 QVCGICLSEEDKR--RLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRF 391 (777)
Q Consensus 344 ~~C~ICle~~~~~--~~~~~l~~C~H~FC~~CI~~w~~~~-~~CP~CR~~~ 391 (777)
..|.||-+.|... ...|..+.|||+||..|+...+.+. ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5799999887543 4456777799999999998766554 5599999886
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=0.16 Score=53.61 Aligned_cols=54 Identities=20% Similarity=0.695 Sum_probs=38.4
Q ss_pred CCcccccccccccccccceeecCC-----CCcccHhhHHHHHhcC--------CCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCC-----SHYFCFTCIMEWSKVE--------SRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C-----~H~FC~~CI~~w~~~~--------~~CP~CR~~~~~i~ 395 (777)
.+..|=||+..-........+.|| .|+.|..||..|...+ .+||+|+..+.-..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 457899999876544334466666 3899999999998532 34999987765443
No 114
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=0.43 Score=49.50 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=36.5
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhc--------CCCCCcccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPLCKQRF 391 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~--------~~~CP~CR~~~ 391 (777)
.....|..|--.+..+ ..+-+.|-|.||+.|+..|.-+ ...||.|...+
T Consensus 48 DY~pNC~LC~t~La~g--dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASG--DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccC--cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3456799998877644 3455669999999999999743 13499998765
No 115
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.75 E-value=0.42 Score=47.38 Aligned_cols=32 Identities=28% Similarity=0.687 Sum_probs=20.2
Q ss_pred CcccccccccccccccceeecCCC-C------------cccHhhHHHHH
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCS-H------------YFCFTCIMEWS 378 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~-H------------~FC~~CI~~w~ 378 (777)
+.+|||||+.-.+ +||+.|. | .-|-.|+.++.
T Consensus 2 d~~CpICme~PHN----AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHN----AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCc----eEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 4689999998663 4554442 1 23456887664
No 116
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.61 E-value=0.57 Score=58.29 Aligned_cols=17 Identities=6% Similarity=0.217 Sum_probs=13.9
Q ss_pred cCCcccccccceecccc
Q 004044 663 QDPTISTANGSVNLTLW 679 (777)
Q Consensus 663 ~~~~~~~~~~~~~~~~~ 679 (777)
+-||.+.+-+|++|-++
T Consensus 742 r~PL~l~~~kP~~I~~~ 758 (840)
T PF04147_consen 742 RRPLQLQKHKPIPIKTF 758 (840)
T ss_pred CCCceeccCCCcccccc
Confidence 77889999999999543
No 117
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=87.01 E-value=1.2 Score=51.27 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=37.4
Q ss_pred CCcccccCcCCC--CCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
....|.+|.... .++.+..|..|..+||..|-.|. ..-.+.|.|..|+..
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~-~~~~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPR-FPSLDIGESTECVFP 133 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccC-cCcCCcccccccccc
Confidence 345777886543 24468889999999999997765 444578999998875
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.56 E-value=0.29 Score=44.56 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=24.6
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHH
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~ 375 (777)
...|+||-..+... .-+.-||||+||..|+.
T Consensus 78 ~~~C~vC~k~l~~~--~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNS--VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCc--eEEEeCCCeEEeccccc
Confidence 46799999988653 34556799999999985
No 119
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.44 E-value=0.32 Score=58.85 Aligned_cols=43 Identities=30% Similarity=0.772 Sum_probs=33.6
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcC--CCCCcccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRF 391 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~--~~CP~CR~~~ 391 (777)
..|.||++ .. .+++..|+|.||..|+..-.... ..||+||..+
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 33 46888899999999999765432 3599997554
No 120
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.21 E-value=0.46 Score=51.33 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=39.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
....||||.+.+......+...+|+|+-|..|+........+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 445699999987666666777889999999999987766688999965
No 121
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.06 E-value=0.22 Score=62.60 Aligned_cols=47 Identities=36% Similarity=0.784 Sum_probs=38.7
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQR 390 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~ 390 (777)
.....|+||++.+.+ .+....|+|.||..|+..|...+..||.|..-
T Consensus 1151 ~~~~~c~ic~dil~~---~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRN---QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHh---cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 345689999998763 34555699999999999999999999999743
No 122
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=85.97 E-value=0.61 Score=58.00 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=7.9
Q ss_pred HHHHHHHHH----HHhhhhhhh
Q 004044 725 EQLQSVVKS----HLKNLSRDI 742 (777)
Q Consensus 725 ~~~~~~~~~----~~~~~~~~~ 742 (777)
.+|+..+|. =|+-|-+|+
T Consensus 783 ~KLk~q~KkErKGA~RELRKD~ 804 (840)
T PF04147_consen 783 RKLKAQLKKERKGAMRELRKDN 804 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 344444443
No 123
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=0.27 Score=55.79 Aligned_cols=46 Identities=30% Similarity=0.760 Sum_probs=30.8
Q ss_pred CCccccccc-ccccccccceeecCCCCcccHhhHHHHHhcC------CCCCccc
Q 004044 342 AKQVCGICL-SEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE------SRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICl-e~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~------~~CP~CR 388 (777)
...+|.||+ +......... +..|+|.||..|+.+..... .+||.=.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~ 197 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDG 197 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCC
Confidence 356899999 4443322333 55699999999999877643 3477433
No 124
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=83.52 E-value=1.2 Score=52.92 Aligned_cols=119 Identities=20% Similarity=0.380 Sum_probs=65.4
Q ss_pred ecCCCCcccHhhHHHHHhcCCCCCcccccccccccCCCCcCcccccceee--cccCCCcccCCCchhh-ccccC-CcCCc
Q 004044 362 LNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVI--QVPERDQVYQPSEEDL-RSFLD-PYENV 437 (777)
Q Consensus 362 l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~~~~~~e~li--qv~erdq~~~~~eEel-~s~ld-~~e~~ 437 (777)
..|=|-|||+.|-..-.-....|-+|-...--+.+.. ...|..+|+ .||+-.-.--.+.|.+ .+++- +.-..
T Consensus 43 qVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTD----n~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnK 118 (900)
T KOG0956|consen 43 QVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTD----NGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNK 118 (900)
T ss_pred ecCCCchhhhhhhhhhhhccceeecccCcccceeccc----CCCceEEEEEeeccceeecccccccceeeccCchhhhcc
Confidence 3456889999998765545567999965554444321 122344442 4444321111222332 22221 11246
Q ss_pred ccccCcCCCCCc-----cccccc--ccccccccccccCC----CC---CCCCCccccCCCC
Q 004044 438 ICSECHQGGDDG-----LMLLCD--ICDSSAHTYCVGLG----RV---VPEGNWYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~-----~lllCd--~Cd~s~H~~CL~pp----~~---vP~g~W~C~~C~~ 484 (777)
.|-+|...+.+. ..+.|. +|.++||-.|-+.. .+ +-+.--||-.|..
T Consensus 119 tCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 119 TCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKY 179 (900)
T ss_pred eeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHH
Confidence 788888775533 345566 47788999998743 11 1122369999964
No 125
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=83.34 E-value=0.61 Score=57.88 Aligned_cols=46 Identities=35% Similarity=0.721 Sum_probs=41.9
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
..|.+|+..++ +++|..|.+-||+.|+.+| ..+|...|.|--|..+
T Consensus 345 dhcrf~~d~~~---~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 345 DHCRFCHDLGD---LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred ccccccCcccc---eeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 68999998887 9999999999999999999 8899999999999854
No 126
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=0.42 Score=56.10 Aligned_cols=43 Identities=30% Similarity=0.610 Sum_probs=33.8
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
+.|.||+..|-.....++.+.|||+.|..|++.-.. .+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCc
Confidence 579999998766666788888999999999986433 4588 543
No 127
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.34 E-value=0.91 Score=43.80 Aligned_cols=52 Identities=29% Similarity=0.747 Sum_probs=37.2
Q ss_pred cccccccccccccccceeecCCCCcccHhhHH-HHHh--cCCCCCcccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM-EWSK--VESRCPLCKQRFKTIT 395 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~-~w~~--~~~~CP~CR~~~~~i~ 395 (777)
-.|-||.+...+.....--.+||-..|..|.. -|-- ....||+|+..|....
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 56999999865442222224589999999987 4643 4577999998886654
No 128
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=82.15 E-value=0.42 Score=42.38 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=0.0
Q ss_pred CCCCCccc
Q 004044 1 MGRGGKVG 8 (777)
Q Consensus 1 ~~~~~~~~ 8 (777)
.||+|+.+
T Consensus 9 iGRkgk~~ 16 (81)
T PF14812_consen 9 IGRKGKKS 16 (81)
T ss_dssp --------
T ss_pred cCcCCCCC
Confidence 36777765
No 129
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.73 E-value=0.78 Score=55.96 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=26.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
...+|.||.-.+... .-++-+|||.||+.||.+..
T Consensus 816 p~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC--cceeeeccchHHHHHHHHHH
Confidence 346899999887533 23556799999999997654
No 130
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=1 Score=48.56 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=35.2
Q ss_pred cccccccc-ccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccc
Q 004044 345 VCGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (777)
Q Consensus 345 ~C~ICle~-~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (777)
.||+|-.. +.+.....++.+|+|..|-+|+..... ....||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 59999874 333333445567999999999997654 46679999766543
No 131
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=81.19 E-value=1.2 Score=34.79 Aligned_cols=38 Identities=21% Similarity=0.547 Sum_probs=21.3
Q ss_pred cccccccccccccceee---cCCCCcccHhhHHHHHhcCC--CCCcc
Q 004044 346 CGICLSEEDKRRLRGTL---NCCSHYFCFTCIMEWSKVES--RCPLC 387 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l---~~C~H~FC~~CI~~w~~~~~--~CP~C 387 (777)
|.+|.+.+..+ +. ..|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G----~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG----QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS----EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee----ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 77888877633 33 24999999999998876543 69988
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.02 E-value=1.5 Score=38.55 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=20.9
Q ss_pred cCCccccccccccc---ccccceeecCCCCcccHhhHHH-HHhcCCCCCcccccccccc
Q 004044 341 VAKQVCGICLSEED---KRRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 341 ~~~~~C~ICle~~~---~~~~~~~l~~C~H~FC~~CI~~-w~~~~~~CP~CR~~~~~i~ 395 (777)
....+|.||-+.+. .+.......-|+-..|+.|+.- .......||.|+.+|....
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 35578999998753 2222222344788899999984 3344567999998776543
No 133
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.50 E-value=0.51 Score=50.53 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=36.7
Q ss_pred cccccCcCC------CCCcccccccccccccccccccCC----CCCCCCCccccCCCCC
Q 004044 437 VICSECHQG------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~------~~~~~lllCd~Cd~s~H~~CL~pp----~~vP~g~W~C~~C~~~ 485 (777)
..|.+|-.+ +..+.++.|..|..++|.+|+..+ ..+-+..|.|..|..+
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 345556443 224468999999999999999976 3344678999999887
No 134
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.46 E-value=0.8 Score=37.62 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=27.9
Q ss_pred CCcccccCcCCCC-CcccccccccccccccccccC
Q 004044 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGL 468 (777)
Q Consensus 435 e~~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~p 468 (777)
....|.+|+..-. ...++.|..|+.+||..|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4578999998753 445899999999999999863
No 135
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=80.28 E-value=0.76 Score=52.58 Aligned_cols=49 Identities=35% Similarity=0.824 Sum_probs=38.2
Q ss_pred cccccCcCCC--CCcccccccccccccccccccCC--CCCCC-------CCccccCCCCC
Q 004044 437 VICSECHQGG--DDGLMLLCDICDSSAHTYCVGLG--RVVPE-------GNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp--~~vP~-------g~W~C~~C~~~ 485 (777)
.+|.||-... +.+.++-|+.|+-..|-.|++.. -.||. ..|||--|+.+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 5899997653 45578999999999999999954 34453 35999999875
No 136
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.24 E-value=0.73 Score=55.89 Aligned_cols=43 Identities=23% Similarity=0.595 Sum_probs=32.7
Q ss_pred cccccccccccccccceee-cCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|.+|-..+. .|++ -.|||.||..|+. .....||.|+..+..
T Consensus 841 skCs~C~~~Ld----lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLD----LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccc----cceeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence 47999998876 4444 5599999999998 445669999764433
No 137
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=80.19 E-value=0.41 Score=52.23 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=31.8
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
...|-.|...........|..|..-||.+|-.. +-+.--+||.|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~---iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVF---IHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHH---HHhhhhcCCCcCC
Confidence 356999966655556777888888887777542 2233468999974
No 138
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.54 E-value=0.51 Score=56.47 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=35.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH---hcCCCCCcccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS---KVESRCPLCKQRF 391 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~---~~~~~CP~CR~~~ 391 (777)
....|+||+..+. .+++..|.|.||..|+-.-+ .....||+|+..+
T Consensus 20 k~lEc~ic~~~~~----~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVK----EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEee----ccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 4478999999886 56888899999999997433 3345699998543
No 139
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=78.35 E-value=0.43 Score=59.15 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=72.0
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccccc-ccccccCCCCcCcccc-cceeecccCC
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR-FKTITKPERSTAGVDL-RSVVIQVPER 416 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~-~~~i~~~~~~~~~~~~-~e~liqv~er 416 (777)
+..|-+|-.... ...+-.|+.++|..|+..=+. ..+.|-+|+.. ++... ..+.. .+.+..| |
T Consensus 344 ddhcrf~~d~~~----~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvv------d~vl~~~K~~~~i--R 411 (1414)
T KOG1473|consen 344 DDHCRFCHDLGD----LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVV------DCVLPPSKNVDSI--R 411 (1414)
T ss_pred cccccccCcccc----eeecccCCceEEeeecCCccccCCCccchhhhhhhhccCccc------ccccChhhcccce--e
Confidence 456999987754 234455888999999874322 22458888521 11111 01000 0000000 0
Q ss_pred CcccCCCchhhccccCCcCCcccccCcCCCCCcccccccc-ccccccc-ccccCC---CCCCCCCccccCCCCCCCCCC
Q 004044 417 DQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDI-CDSSAHT-YCVGLG---RVVPEGNWYCDGCRPVALGSS 490 (777)
Q Consensus 417 dq~~~~~eEel~s~ld~~e~~~C~vC~~~~~~~~lllCd~-Cd~s~H~-~CL~pp---~~vP~g~W~C~~C~~~~~g~~ 490 (777)
.+... ...+..++. +....|-+|+..+. +++|.+ |...||+ .||+-. ..++.+-|+|+.|....+|..
T Consensus 412 ~~~iG--~dr~gr~yw-fi~rrl~Ie~~det---~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT 484 (1414)
T KOG1473|consen 412 HTPIG--RDRYGRKYW-FISRRLRIEGMDET---LLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLT 484 (1414)
T ss_pred ccCCC--cCccccchh-ceeeeeEEecCCCc---EEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccch
Confidence 00000 000111110 12356788875444 899998 9999999 999933 568899999999987655544
No 140
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=1.9 Score=48.48 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=33.8
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCcc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLC 387 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~C 387 (777)
++|||=.+.-... ..|+.+.|||+.+..-|.+..++. -.||.|
T Consensus 335 F~CPVlKeqtsde-NPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDE-NPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCC-CCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 6799987765433 357778899999999999887754 459999
No 141
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.34 E-value=1.8 Score=48.55 Aligned_cols=28 Identities=25% Similarity=0.901 Sum_probs=20.4
Q ss_pred CCcccHhhHHHHHhc-------------CCCCCcccccccc
Q 004044 366 SHYFCFTCIMEWSKV-------------ESRCPLCKQRFKT 393 (777)
Q Consensus 366 ~H~FC~~CI~~w~~~-------------~~~CP~CR~~~~~ 393 (777)
.-..|..|+-+|.-. +..||+||++|.-
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 344688999999732 2459999999864
No 142
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=73.70 E-value=1.3 Score=39.71 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=34.3
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|..|..+++.-.++++. |...||+.|+.-........-.||.|+..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred cCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 3567788877766666555 99999999988552222345699999973
No 143
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=72.37 E-value=1.4 Score=46.25 Aligned_cols=53 Identities=23% Similarity=0.549 Sum_probs=35.7
Q ss_pred cCCccccccccccc-ccccceee--cCCCCcccHhhHHHHHhc-CCCCC--ccccccccc
Q 004044 341 VAKQVCGICLSEED-KRRLRGTL--NCCSHYFCFTCIMEWSKV-ESRCP--LCKQRFKTI 394 (777)
Q Consensus 341 ~~~~~C~ICle~~~-~~~~~~~l--~~C~H~FC~~CI~~w~~~-~~~CP--~CR~~~~~i 394 (777)
..+..||||..... +.. +.++ |-|-|..|-+|+.+-+.. ...|| -|.+-+..+
T Consensus 8 ~~d~~CPvCksDrYLnPd-ik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPD-IKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred hhcccCCccccccccCCC-eEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 34568999998532 222 2333 349999999999987654 56799 887655443
No 144
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=69.42 E-value=2.2 Score=52.65 Aligned_cols=8 Identities=0% Similarity=-0.122 Sum_probs=3.3
Q ss_pred ccccCCCC
Q 004044 477 WYCDGCRP 484 (777)
Q Consensus 477 W~C~~C~~ 484 (777)
.+|..|..
T Consensus 623 v~vck~k~ 630 (1024)
T KOG1999|consen 623 VFVCKEKN 630 (1024)
T ss_pred eEEEecCC
Confidence 34444443
No 145
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.46 E-value=3.3 Score=49.84 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=31.9
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCc-cccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL-CKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~-CR~~ 390 (777)
+.|.||--.+... -.++..|+|+.|-+|...|......||. |.+.
T Consensus 1029 ~~C~~C~l~V~gs--s~~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGS--SNFCGTCGHVGHTSCMMEWFRTGDVCPSGCGCH 1074 (1081)
T ss_pred eeeeeEeeEeecc--chhhccccccccHHHHHHHHhcCCcCCCCCCcC
Confidence 4577775554322 2344569999999999999999889993 5443
No 146
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=4 Score=43.44 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=51.0
Q ss_pred cccCCCCCcchhccccCCCCCccccccchhhHHhhhhhcCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCC
Q 004044 303 SLRNSSSSKTIQEDGNLGQPRKTLGRKGKEKIEEVKSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES 382 (777)
Q Consensus 303 ~~~ssS~~~~~qE~edl~~~~~~~~~~~~e~~~~~~~~~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~ 382 (777)
...+-|++.+......|...-.++.. +........-..-.+.|||---.+........+-+|||+|-..-+... .+.
T Consensus 72 ~pksaShIKslKDvveLklt~n~~~~-gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas 148 (293)
T KOG3113|consen 72 LPKSASHIKSLKDVVELKLTLNPAFE-GDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KAS 148 (293)
T ss_pred CCcchhhhcchhhHhheecccCcccc-cccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHh--hhc
Confidence 34445566666655555444343332 111000011112347899987666555445677889999988777653 256
Q ss_pred CCCcccccccc
Q 004044 383 RCPLCKQRFKT 393 (777)
Q Consensus 383 ~CP~CR~~~~~ 393 (777)
.|++|.+.|..
T Consensus 149 ~C~~C~a~y~~ 159 (293)
T KOG3113|consen 149 VCHVCGAAYQE 159 (293)
T ss_pred cccccCCcccc
Confidence 79999887754
No 147
>PLN02189 cellulose synthase
Probab=66.78 E-value=4.5 Score=50.85 Aligned_cols=54 Identities=31% Similarity=0.570 Sum_probs=37.2
Q ss_pred CCccccccccccc---ccccceeecCCCCcccHhhHHH-HHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEED---KRRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~---~~~~~~~l~~C~H~FC~~CI~~-w~~~~~~CP~CR~~~~~i~ 395 (777)
....|.||-+.+. .+.....+.-|+-..|+.|+.- ....+..||.|+.+|....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 4568999999764 2222223344888899999973 3345667999999987543
No 148
>PLN03237 DNA topoisomerase 2; Provisional
Probab=66.64 E-value=13 Score=48.71 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCcc
Q 004044 264 VPSDSDFVSSGSSDYE 279 (777)
Q Consensus 264 v~~~~d~~~~~~~d~E 279 (777)
|.+++++.+.+++|++
T Consensus 1446 ~~~~~e~~~~d~~df~ 1461 (1465)
T PLN03237 1446 VLSDSESESADDSDFD 1461 (1465)
T ss_pred EecCcccccccccccc
Confidence 4455555544444443
No 149
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=66.01 E-value=1.6 Score=49.49 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=17.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
.-++|.+|--.+.....+.+ =+..||-.|.+.-+
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v---~~k~~CE~cyq~tl 334 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQV---DGKPYCEGCYQDTL 334 (468)
T ss_pred cceehHhhhhhhcccccccc---CCcccchHHHHHHH
Confidence 34678888776543221111 23456666665444
No 150
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.58 E-value=3.2 Score=44.75 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=26.0
Q ss_pred CCcccccccccccccccceeecCC-CCcccHhhHHHHHhc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCC-SHYFCFTCIMEWSKV 380 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C-~H~FC~~CI~~w~~~ 380 (777)
..+.|++|.+.+.....+ -++.- .|.||+-|-..-.+.
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHh
Confidence 348899999998754221 11111 699999998877654
No 151
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.63 E-value=4.5 Score=44.69 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=37.5
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|+||.+.........+..+|++..|+.|+..-.....+||.||+++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 56999999764333333335589999999999888888999999966543
No 152
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=63.77 E-value=5.9 Score=50.03 Aligned_cols=54 Identities=28% Similarity=0.566 Sum_probs=37.5
Q ss_pred CCcccccccccccc-cccceee--cCCCCcccHhhHH-HHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTL--NCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l--~~C~H~FC~~CI~-~w~~~~~~CP~CR~~~~~i~ 395 (777)
...+|.||-+.+.- ....+.+ .-|+--.|+.|+. ...+.+..||+|+.+|....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 45689999997642 1222333 4488889999997 34445667999999987544
No 153
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.63 E-value=6.2 Score=32.53 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.3
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCc--ccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL--CKQRF 391 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~--CR~~~ 391 (777)
...|++|-..|.....+-+.+.|+-.||+.|...- ..|-+ |..++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCCc
Confidence 46799999999766666777889999999997642 34555 55443
No 154
>PLN02436 cellulose synthase A
Probab=63.43 E-value=5.1 Score=50.47 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=36.9
Q ss_pred CCcccccccccccc-cccceee--cCCCCcccHhhHHH-HHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTL--NCCSHYFCFTCIME-WSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l--~~C~H~FC~~CI~~-w~~~~~~CP~CR~~~~~i~ 395 (777)
...+|.||-+.+.. ....+.+ .-|+-..|+.|+.- ....+..||.|+.+|....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 45689999997631 1222333 34888899999973 3344567999999987543
No 155
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=62.95 E-value=4.3 Score=42.15 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=36.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
-.|.+|...+-. ...+-.|+-.||..|+..+++....||.|.-=+++
T Consensus 182 k~Cn~Ch~LvIq---g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ---GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhhe---eeccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 469999987532 23456688899999999999998899999654433
No 156
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.92 E-value=3.5 Score=42.98 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=27.5
Q ss_pred cccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccc
Q 004044 346 CGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRF 391 (777)
Q Consensus 346 C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~ 391 (777)
|-+|...-. -.++.||.|. +|..|-.. ...||+|+...
T Consensus 161 Cr~C~~~~~----~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREA----TVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCCc----eEEeecccceEeccccccc----CccCCCCcChh
Confidence 888987632 2466889877 99999764 34599997654
No 157
>PLN02400 cellulose synthase
Probab=60.10 E-value=6.2 Score=49.85 Aligned_cols=54 Identities=26% Similarity=0.542 Sum_probs=37.2
Q ss_pred CCccccccccccc---ccccceeecCCCCcccHhhHH-HHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEED---KRRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~---~~~~~~~l~~C~H~FC~~CI~-~w~~~~~~CP~CR~~~~~i~ 395 (777)
...+|.||-+.+. .+.....+.-|+--.|+.|+. ........||+|+.+|....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 4578999999763 222222334488889999997 33445567999999987553
No 158
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=59.51 E-value=3.3 Score=49.96 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=8.2
Q ss_pred chhhhhhhhhhhhc
Q 004044 569 RWIHRHIQNLLSMN 582 (777)
Q Consensus 569 r~lhr~i~~l~s~~ 582 (777)
+++.+...++|...
T Consensus 479 ~ai~~~~~slie~~ 492 (622)
T PF02724_consen 479 RAIFRTGSSLIEKK 492 (622)
T ss_pred HHHHHHHHHHhccC
Confidence 55666666666443
No 159
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.46 E-value=1 Score=50.27 Aligned_cols=51 Identities=14% Similarity=0.380 Sum_probs=38.6
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
..|.||...+...-....-+-|||.++..||.+|+.....||.|+..+..+
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 359999987753211122355999999999999999888899999877554
No 160
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.24 E-value=4.9 Score=43.52 Aligned_cols=30 Identities=23% Similarity=0.741 Sum_probs=22.3
Q ss_pred CCCcccHhhHHHHHh-------------cCCCCCccccccccc
Q 004044 365 CSHYFCFTCIMEWSK-------------VESRCPLCKQRFKTI 394 (777)
Q Consensus 365 C~H~FC~~CI~~w~~-------------~~~~CP~CR~~~~~i 394 (777)
|.-..|..|+.+|.. .+.+||+||+.|...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 455678899988863 245699999998654
No 161
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.21 E-value=3.3 Score=32.78 Aligned_cols=43 Identities=21% Similarity=0.527 Sum_probs=27.8
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHh------cCCCCCccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK------VESRCPLCK 388 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~------~~~~CP~CR 388 (777)
.|.||..... .........|+.+||..|+..-.. ....||.|+
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4889988432 222223355999999999973321 246799985
No 162
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=58.65 E-value=7.2 Score=43.70 Aligned_cols=7 Identities=0% Similarity=0.216 Sum_probs=2.8
Q ss_pred ccccccC
Q 004044 462 HTYCVGL 468 (777)
Q Consensus 462 H~~CL~p 468 (777)
|.+|...
T Consensus 276 ~~~~s~~ 282 (390)
T KOG2897|consen 276 ASFLSEF 282 (390)
T ss_pred hhhhhcC
Confidence 4444443
No 163
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.54 E-value=7.5 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.524 Sum_probs=18.6
Q ss_pred ccccccccccccccccee-ecCCCCcccHhhHHHHHh-----cCCCCCccccc
Q 004044 344 QVCGICLSEEDKRRLRGT-LNCCSHYFCFTCIMEWSK-----VESRCPLCKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~-l~~C~H~FC~~CI~~w~~-----~~~~CP~CR~~ 390 (777)
+.|||.+..+. .|+ ...|.|.-|++= ..|+. ..+.||+|.++
T Consensus 3 L~CPls~~~i~----~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR----IPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S----SEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE----eCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 57999988776 333 355999987653 23332 34679999753
No 164
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=58.46 E-value=2.9 Score=36.70 Aligned_cols=47 Identities=26% Similarity=0.501 Sum_probs=34.1
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
.-|..|...++.-.+++ ..|...||..|+.-.-..|...-.||.|+.
T Consensus 32 g~Cp~Ck~PgDdCPLv~-G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq 78 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVW-GYCLHAFHAHCILKWLNTPTSQGQCPMCRQ 78 (84)
T ss_pred CcCCCCcCCCCCCccHH-HHHHHHHHHHHHHHHhcCccccccCCcchh
Confidence 35777887776554543 268888999998754456677789999986
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=57.93 E-value=7.3 Score=49.09 Aligned_cols=53 Identities=25% Similarity=0.540 Sum_probs=36.6
Q ss_pred CCcccccccccccc-cccceee--cCCCCcccHhhHH-HHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTL--NCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l--~~C~H~FC~~CI~-~w~~~~~~CP~CR~~~~~i 394 (777)
....|.||-+.+.. ....+.+ .-|+-..|+.|+. .....+..||.|+.+|...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~ 70 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRH 70 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 45789999997632 1222333 4488889999996 3334556799999998754
No 166
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=56.94 E-value=8.8 Score=46.57 Aligned_cols=47 Identities=28% Similarity=0.630 Sum_probs=35.4
Q ss_pred cccccCcCCCCCccccccccccccc-ccccccCCCCCCCCCccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSA-HTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~-H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
.+|..|+.... ....||..|+..+ +..|-.....+|.+.-||+.|-.
T Consensus 2 ~~Cp~Cg~~n~-~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENP-NNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCC-CCCccccccCCCCCCCcCCCCCCCCCcccccccccCC
Confidence 47999987643 3477899999774 45676655578888889999964
No 167
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=5.7 Score=47.88 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=35.0
Q ss_pred ccccccccccccccceeecCCCC-cccHhhHHHHHh--c----CCCCCcccccccccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSH-YFCFTCIMEWSK--V----ESRCPLCKQRFKTIT 395 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H-~FC~~CI~~w~~--~----~~~CP~CR~~~~~i~ 395 (777)
.|+||-.... ......|+| ..|..|..+... . ...||+|+..+....
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 5999988765 456778999 799999986542 3 345899998766554
No 168
>PLN02195 cellulose synthase A
Probab=56.25 E-value=8.9 Score=48.08 Aligned_cols=51 Identities=18% Similarity=0.370 Sum_probs=34.7
Q ss_pred CCcccccccccccc-cccceee--cCCCCcccHhhHHHHH-hcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTL--NCCSHYFCFTCIMEWS-KVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l--~~C~H~FC~~CI~~w~-~~~~~CP~CR~~~~ 392 (777)
....|.||-+.+.. ....+.+ .-|+-..|+.|+.-=. +.+..||+|+.+|.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34689999996531 1222333 4488999999996322 34556999999887
No 169
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=55.97 E-value=8.6 Score=46.79 Aligned_cols=50 Identities=28% Similarity=0.779 Sum_probs=36.8
Q ss_pred CCcccccccccccccccceeecCCC-----CcccHhhHHHHHhcCC--CCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVES--RCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~~~--~CP~CR~~~~~ 393 (777)
+..+|.||...-... .|...||. .+.|..|+..|+..+. .|-+|..++..
T Consensus 11 d~~~CRICr~e~~~d--~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRD--DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCC--CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 347899999864333 56666664 3489999999998653 49999987654
No 170
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=3.6 Score=40.92 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.0
Q ss_pred CcccccccccccccccceeecCCCCcccH
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCF 371 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~ 371 (777)
.-.|.|||+.+..+..+..|+ |..+||.
T Consensus 177 kGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 357999999998776666666 8888875
No 171
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.15 E-value=5.5 Score=45.30 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=31.9
Q ss_pred CCccccccccccc--ccccceeecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 342 AKQVCGICLSEED--KRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 342 ~~~~C~ICle~~~--~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
.-..|++|.-.+. .+-...+.. |+|.||+.|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3467888887653 223344455 99999999999998777666655
No 172
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=54.20 E-value=6 Score=36.89 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=32.2
Q ss_pred CcccccCcCCCCCcccccc------ccc---ccccccccccCC------CCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLC------DIC---DSSAHTYCVGLG------RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllC------d~C---d~s~H~~CL~pp------~~vP~g~W~C~~C~~~ 485 (777)
...|..|....... .+.| ..| ...|+..||--. .-+...+|.||.|+..
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 35678887754322 3455 556 777888888643 1234678999999973
No 173
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=6.8 Score=45.36 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=28.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV 380 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~ 380 (777)
....|.||++.+.. ..+.+.|+|.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhh
Confidence 44789999998863 3566779999999999988753
No 174
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=53.79 E-value=8.8 Score=50.15 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred CcccCcccCccccccccchhhccccCCCCCCCccccc
Q 004044 589 GNNDGMPTANLNSENFNSQLDQGRETVVQPARGQETE 625 (777)
Q Consensus 589 ~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 625 (777)
..-+||.+...+-++-++-+........-+++-++|.
T Consensus 970 k~~~g~iy~C~hk~~Iepkl~K~~~~~v~~tC~idv~ 1006 (2849)
T PTZ00415 970 KDEGGMIYKCAHENFIEPKLEKLDDENVENTCHIDAE 1006 (2849)
T ss_pred cccCCceEeCCcccccChhhhhccchhcceeeeecHH
Confidence 4456777777777777777766655555555555553
No 175
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.73 E-value=12 Score=44.46 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=38.3
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC--CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp--~~vP~g~W~C~~C~~~ 485 (777)
..|..|..+++ ++.|..|..++|..|.+++ ...+.+.|.|..|-..
T Consensus 48 ts~~~~~~~gn---~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICKSGGN---LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhcchhhhcCC---ccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 67899999888 9999999999999999987 4555567888888663
No 176
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=49.11 E-value=9.2 Score=41.43 Aligned_cols=52 Identities=25% Similarity=0.664 Sum_probs=35.6
Q ss_pred CcccccccccccccccceeecCCC-----CcccHhhHHHHHhc--CCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKV--ESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~--~~~CP~CR~~~~~i 394 (777)
...|-||..........+.+.+|. +..|..|+..|... ...|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 467999999754322124555553 55899999999974 45699997665443
No 177
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.39 E-value=11 Score=37.57 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=25.8
Q ss_pred ccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 347 GICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 347 ~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.||+..-......-.-+.=.+.||..|-..-.. .||.|..++..-
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 588875321111111122346799999875433 499997776443
No 178
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=46.97 E-value=6.4 Score=28.10 Aligned_cols=28 Identities=32% Similarity=0.737 Sum_probs=12.2
Q ss_pred ccccCcCCCCCccccccccccccccccc
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYC 465 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~C 465 (777)
.|.+|+..........|..|+-.+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5889998876667888999999999887
No 179
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.32 E-value=10 Score=31.94 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=18.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w 377 (777)
....|.+|...|.-....-..-.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 446899999998643333445669999998888643
No 180
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=45.13 E-value=1.5 Score=53.15 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=53.6
Q ss_pred ccCCcCCcccccCcCCCCCcccccccccccccccccccC-C-CCCCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 004044 430 FLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGL-G-RVVPEGNWYCDGCRPVALGSSSSQAQDPLPD 500 (777)
Q Consensus 430 ~ld~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~p-p-~~vP~g~W~C~~C~~~~~g~~~~~~~~~~~~ 500 (777)
|++..-...|..|..... .++|..|-+.||..||.+ | +..+.+.|.|+.|....+.......|+.+.+
T Consensus 500 f~e~~~d~~~~~~~~~l~---~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~ 569 (696)
T KOG0383|consen 500 FLEEFHDISCEEQIKKLH---LLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA 569 (696)
T ss_pred hhhhcchhhHHHHHHhhc---cccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh
Confidence 344455678999988776 889999999999999998 6 8888999999999877666555555554444
No 181
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=44.33 E-value=5.8 Score=34.98 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=24.5
Q ss_pred CCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
...+|.+|+.. .+....+.|..|.-+.+..|+.- +.-.|.-.||.|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY--Erkeg~q~CpqCkt 59 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY--ERKEGNQVCPQCKT 59 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH--HHHTS-SB-TTT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHH--HhhcCcccccccCC
Confidence 45789999865 34557888999999999999875 45578899999985
No 182
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.62 E-value=22 Score=41.72 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=39.5
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCC--CCccccCCCCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPE--GNWYCDGCRPVALG 488 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~--g~W~C~~C~~~~~g 488 (777)
+.+|-.|+-.+. .+.|..|-+.||..|+.|-..++. ..|.|+.|..+.-.
T Consensus 60 d~~cfechlpg~---vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k~~ 111 (588)
T KOG3612|consen 60 DPFCFECHLPGA---VLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFKVN 111 (588)
T ss_pred CcccccccCCcc---eeeeehhhccccccccCcchhhccccccccCCcccccCCC
Confidence 478999988776 899999999999999997633433 35999999876433
No 183
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=42.99 E-value=16 Score=29.83 Aligned_cols=27 Identities=26% Similarity=0.652 Sum_probs=15.7
Q ss_pred eecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 361 TLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 361 ~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
..+.|++.||.+|=.--.+.-..||-|
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred ECCCCCCccccCcChhhhccccCCcCC
Confidence 447799999999976444444569998
No 184
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=42.99 E-value=13 Score=32.07 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=19.0
Q ss_pred cccccCcCCC---CCccccccc--ccccccccccccCC--------CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGG---DDGLMLLCD--ICDSSAHTYCVGLG--------RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~---~~~~lllCd--~Cd~s~H~~CL~pp--------~~vP~g~W~C~~C~~~ 485 (777)
..|.+|.... .....+.|. .|...||..||.-. ...-...+.||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 4688887642 233568898 89999999999732 1111234679999863
No 185
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=42.11 E-value=6 Score=34.34 Aligned_cols=42 Identities=31% Similarity=0.747 Sum_probs=23.3
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
..||+|...+... . +|++|..|-... .....||.|..++..+
T Consensus 2 ~~CP~C~~~L~~~------~--~~~~C~~C~~~~-~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ------G--GHYHCEACQKDY-KKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE------T--TEEEETTT--EE-EEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe------C--CEEECccccccc-eecccCCCcccHHHHH
Confidence 5799999887522 1 788999998754 3345699998776443
No 186
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=41.94 E-value=12 Score=48.98 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=9.2
Q ss_pred hccccccccchHHHH
Q 004044 742 IQLALFSLCRPQYIQ 756 (777)
Q Consensus 742 ~~~~~~~~~~~~~~~ 756 (777)
.|++|+.|--|-||.
T Consensus 1079 vd~~h~ylf~P~yvk 1093 (2849)
T PTZ00415 1079 VDILHFYLFFPIYIK 1093 (2849)
T ss_pred eeeeeEEEEEEEEee
Confidence 466666666666653
No 187
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=14 Score=42.72 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=21.8
Q ss_pred ceeecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 359 RGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 359 ~~~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
..+.-.|+|.||+.|...|..-. +|+.+
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~-~C~~~ 205 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPV-SCPGA 205 (444)
T ss_pred cceeCCCCchhHhhccccccCCC-cccch
Confidence 45666799999999998886544 67777
No 188
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.45 E-value=21 Score=43.45 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=34.8
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCc--cccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL--CKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~--CR~~ 390 (777)
..|.+|--.+... ....+.|+|.-|..|+..|...+..||. |...
T Consensus 780 ~~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 780 AKCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred cCceeecceeeee--EeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 4699998876522 3455679999999999999998888887 6443
No 189
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=18 Score=45.94 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhccccccccchHHHHhh
Q 004044 718 FDSHVAKEQLQSVVKSHLKNLSRDIQLALFSLCRPQYIQRH 758 (777)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (777)
.-|.-+-|+|.. -.|.+|.||-|+|-.+++|-+-...|-|
T Consensus 2424 r~Fnka~EK~Rn-QhSnvkdi~LdV~Rdp~~LfqdTM~QLh 2463 (3015)
T KOG0943|consen 2424 RKFNKAMEKLRN-QHSNVKDISLDVDRDPDLLFQDTMRQLH 2463 (3015)
T ss_pred HHHHHHHHHHHh-ccccccceeeeeccCcchHHHHHHHHHH
Confidence 445555555532 1344577888888888888776666655
No 190
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.66 E-value=18 Score=31.01 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=9.1
Q ss_pred cccHhhHHHHHhc
Q 004044 368 YFCFTCIMEWSKV 380 (777)
Q Consensus 368 ~FC~~CI~~w~~~ 380 (777)
-||+.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999753
No 191
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.39 E-value=9.3 Score=41.63 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=21.5
Q ss_pred cccccccccccccccceeecC-----CCCcccHhhHHHHHhcCCCCCccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNC-----CSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~-----C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
..||||-..-. ..++.. =.|.+|.-|-..|.-....||.|.
T Consensus 173 g~CPvCGs~P~----~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg 218 (290)
T PF04216_consen 173 GYCPVCGSPPV----LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCG 218 (290)
T ss_dssp SS-TTT---EE----EEEEE------EEEEEETTT--EEE--TTS-TTT-
T ss_pred CcCCCCCCcCc----eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCC
Confidence 57999988632 122211 246799999999988888999994
No 192
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=22 Score=45.19 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=4.3
Q ss_pred cccCCCCCC
Q 004044 506 TNLYNRPSP 514 (777)
Q Consensus 506 ~~~f~~p~~ 514 (777)
.++|..|+.
T Consensus 2264 ed~f~dP~e 2272 (3015)
T KOG0943|consen 2264 EDLFGDPSE 2272 (3015)
T ss_pred hhhcCCchH
Confidence 445555443
No 193
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=17 Score=40.82 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=34.0
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|-.....+..+.=.-|...||..|.+|+ +-...-+||-|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpW--L~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPW--LTQTRTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhh--HhhcCccCCCCCCc
Confidence 589999887655544444678899999999986 22223379999874
No 194
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.14 E-value=51 Score=27.53 Aligned_cols=46 Identities=20% Similarity=0.493 Sum_probs=30.1
Q ss_pred cccccccccccccccceeecCC--CCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCC--SHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C--~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..|-.|-..+........+ | ..+||..|....+ .+.||.|...|..
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3577777666543222222 5 4689999998765 4569999776644
No 195
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.04 E-value=25 Score=28.33 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=23.9
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w 377 (777)
..|.+|-..|...........||++||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4689998777543333445669999999998744
No 196
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=34.01 E-value=29 Score=38.24 Aligned_cols=46 Identities=4% Similarity=-0.195 Sum_probs=33.2
Q ss_pred CcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.+.|.+|-..+. -.++.+|+|. ||..|.. +....+||+|....++.
T Consensus 343 ~~~~~~~~~~~~----st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~ 389 (394)
T KOG2113|consen 343 SLKGTSAGFGLL----STIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTL 389 (394)
T ss_pred hcccccccCcee----eeEeecCCcccChhhhhh--cccCCccccccccceee
Confidence 456999977654 3466779876 9999987 45567899997665543
No 197
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=33.81 E-value=12 Score=44.73 Aligned_cols=41 Identities=22% Similarity=0.550 Sum_probs=25.2
Q ss_pred Cccccccccc-----ccccccceeecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 343 KQVCGICLSE-----EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 343 ~~~C~ICle~-----~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
...|.||... |. ......+..|+++||..|...- ..-||-|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r~---s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRRK---SPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhcc---CCCCCch
Confidence 4668888431 21 1112234559999999998743 3339999
No 198
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=33.69 E-value=26 Score=35.44 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.0
Q ss_pred CcccccccccccccccccccCC
Q 004044 448 DGLMLLCDICDSSAHTYCVGLG 469 (777)
Q Consensus 448 ~~~lllCd~Cd~s~H~~CL~pp 469 (777)
.+.|+.|..|.++||+..|.++
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred hheEEecCCccceeehhhCCCC
Confidence 4468889999999999999876
No 199
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.45 E-value=30 Score=32.78 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=17.4
Q ss_pred ccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 452 LLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 452 llCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..|..|..-|+..|-- .|-+.--.||.|..
T Consensus 82 y~C~~C~~~FC~dCD~---fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 82 YVCAVCKNVFCVDCDV---FVHESLHCCPGCIH 111 (112)
T ss_pred eeCCCCCCccccccch---hhhhhccCCcCCCC
Confidence 3477777666666633 22233356888863
No 200
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.20 E-value=26 Score=37.35 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=26.4
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
..|..||..+. .|++.+=||+||+.||..+.
T Consensus 44 dcCsLtLqPc~----dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCR----DPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeeccccc----CCccCCCCeeeeHHHHHHHH
Confidence 57999999886 67888789999999998664
No 201
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=32.36 E-value=27 Score=36.21 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=30.8
Q ss_pred CcccccCcCCC-----CCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 436 NVICSECHQGG-----DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~-----~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..+|.+|...+ +......|..|..-||..|+.. -.||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 35788887653 2335778999999999999883 23999975
No 202
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.00 E-value=18 Score=39.58 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=37.7
Q ss_pred Ccccccccccccccccceee-cCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+|-||...+. ++.+ ..|.|.||..|...|.....-||.|+.....
T Consensus 105 ~~~~~~~~g~l~----vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLT----VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEE----ecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 357999998876 4444 4499999999999999988889999876543
No 203
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.82 E-value=30 Score=38.16 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=32.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCcc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLC 387 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~C 387 (777)
++||+=-+.-.. ...|+++.|||+.-..-+....++. -.||.|
T Consensus 337 FiCPVlKe~~t~-ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTD-ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcc-cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 679987665432 2358888899999999888776643 459999
No 204
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=10 Score=41.16 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=36.0
Q ss_pred Cccccccccccc--ccccceeecC--------CCCcccHhhHHHHHhcC-CCCCccccc
Q 004044 343 KQVCGICLSEED--KRRLRGTLNC--------CSHYFCFTCIMEWSKVE-SRCPLCKQR 390 (777)
Q Consensus 343 ~~~C~ICle~~~--~~~~~~~l~~--------C~H~FC~~CI~~w~~~~-~~CP~CR~~ 390 (777)
...|.||...+. .....+.+.. |+|+.|..|+..-+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356999998776 2344556666 99999999999776543 579999764
No 205
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=31.12 E-value=7.4 Score=42.52 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=26.5
Q ss_pred cccccCcCCCC-----------CcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 437 VICSECHQGGD-----------DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~-----------~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..|-+|...-. .....-|..|..-||.+|-.. +-..--+|+.|..
T Consensus 363 ~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvf---iHe~Lh~C~gCe~ 418 (421)
T COG5151 363 THCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVF---IHETLHFCIGCEL 418 (421)
T ss_pred ccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHH---HHHHHhhCCCCcC
Confidence 56777866321 112355888887777777542 1123367888865
No 207
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.08 E-value=15 Score=40.62 Aligned_cols=42 Identities=24% Similarity=0.562 Sum_probs=29.5
Q ss_pred cccccccccccccccceeec----C--CCCcccHhhHHHHHhcCCCCCcccc
Q 004044 344 QVCGICLSEEDKRRLRGTLN----C--CSHYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~----~--C~H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
..||||-..-. ..++. . =.+.+|.-|-..|.-....||.|..
T Consensus 185 ~~CPvCGs~P~----~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 185 TLCPACGSPPV----ASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CcCCCCCChhh----hhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 48999988532 11111 1 1366899999999988889999963
No 208
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.77 E-value=32 Score=35.71 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCccccccccc-----ccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 342 AKQVCGICLSE-----EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~-----~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
.+..|.||-+. |+. ........|+.+||..|... ..||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 35788888752 221 12334467999999999873 5599994
No 209
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.59 E-value=10 Score=36.72 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCccccccccc-ccccccceeecCCCCcccHhhHHHHHhc----CCCCCcccccccccccC
Q 004044 342 AKQVCGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWSKV----ESRCPLCKQRFKTITKP 397 (777)
Q Consensus 342 ~~~~C~ICle~-~~~~~~~~~l~~C~H~FC~~CI~~w~~~----~~~CP~CR~~~~~i~~~ 397 (777)
.+.+|.||+-. |-.+.. -.+.-|.-.||..|--+.... .+.|-+|++....+.+.
T Consensus 64 ddatC~IC~KTKFADG~G-H~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ks 123 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCG-HNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKS 123 (169)
T ss_pred cCcchhhhhhcccccccC-cccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhc
Confidence 45789999975 322211 122225555777776543222 24588888765555444
No 210
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.21 E-value=25 Score=43.95 Aligned_cols=60 Identities=40% Similarity=0.586 Sum_probs=0.0
Q ss_pred hccccccCCCCCCCcchhhhhhhhhhhhhhhcccCCCCCCCCchhhhhhhcccCCCcccccccccccc----------cC
Q 004044 85 RKREEVFDSFEGEDEDEEEEVDVRKVVRSKARKSNLGDGKNGVKTARKRKRVRYGEDEDEDYEEEEED----------ED 154 (777)
Q Consensus 85 ~k~~~~~ddeedEdedeEEeee~~~~~r~k~k~~~~~~~~~~~k~~~k~~~~~~~~eeded~deedee----------eD 154 (777)
+...+.++++|+++++++++++.- ++++|.++++++ +.
T Consensus 881 ra~~~ee~~~e~~~~~~~~~e~~~--------------------------------~d~dD~d~~d~d~~~~~~~~~~~~ 928 (1010)
T KOG1991|consen 881 RAQVEEEDSEEGEEEDDDEEEDFI--------------------------------DDEDDIDEDDQDYLDEYGELALEK 928 (1010)
T ss_pred HHHhhccccccccCCCCcchhhcc--------------------------------CccccccccchhHHHhhccccccc
Q ss_pred CCCCCCCCCCcchhhhhhhhhh
Q 004044 155 EEFTPDDDDCLDEEEELVVTKK 176 (777)
Q Consensus 155 ed~ddeddd~edeeeEe~~eee 176 (777)
++..|++||+++++.+.++++.
T Consensus 929 ~~~~~~ddd~d~~~~~~~ed~~ 950 (1010)
T KOG1991|consen 929 EDSLDDDDDFDEDELDLEEDEL 950 (1010)
T ss_pred cccccccccccchhcccccccc
No 211
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.69 E-value=27 Score=38.61 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=31.3
Q ss_pred CcccccCcCCCC--CcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~--~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|..... +...++-..|+..||..|+..- ...+.-.||.|...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l--~~~~~~~CP~C~~~ 52 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL--FVRGSGSCPECDTP 52 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHH--hcCCCCCCCCCCCc
Confidence 368999998643 3322233389888999998842 12344589999764
No 212
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.67 E-value=17 Score=29.73 Aligned_cols=34 Identities=29% Similarity=0.569 Sum_probs=21.3
Q ss_pred ccc--cccccccc----cccceeecCCCCcccHhhHHHHH
Q 004044 345 VCG--ICLSEEDK----RRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 345 ~C~--ICle~~~~----~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
-|| =|...+.. .......+.|+|.||+.|...|.
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 477 66554332 12222334699999999998884
No 213
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=11 Score=45.65 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=32.9
Q ss_pred Cccccccccc-ccccccceeecCCCCcccHhhHHHHH--hcCCCCCccccccccc
Q 004044 343 KQVCGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~-~~~~~~~~~l~~C~H~FC~~CI~~w~--~~~~~CP~CR~~~~~i 394 (777)
..+|.||+.. +. +..+..|.|.+|..|..... -....|+.| ..|..+
T Consensus 78 e~~~~if~~d~~~----y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c-~~~~s~ 127 (669)
T KOG2231|consen 78 EDTCVIFFADKLT----YTKLEACLHHSCHICDRRFRALYNKKECLHC-TEFKSV 127 (669)
T ss_pred cceeeeeeccccH----HHHHHHHHhhhcCccccchhhhcccCCCccc-cchhHH
Confidence 4678888543 33 55677799999999998653 234569999 665444
No 214
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.09 E-value=34 Score=36.35 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=21.6
Q ss_pred cccHhhHHHHHhcCCCCCccccccccc
Q 004044 368 YFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 368 ~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.-|..|-+.-..++..||+|+......
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccccC
Confidence 368889888888899999998776543
No 215
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.92 E-value=18 Score=25.44 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=3.9
Q ss_pred cccccccc
Q 004044 346 CGICLSEE 353 (777)
Q Consensus 346 C~ICle~~ 353 (777)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 216
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.84 E-value=31 Score=41.69 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=30.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
.+|-||...-......+.+..|.-.||..| |...++.||+|.
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 468889876554444556667999999987 445566799994
No 217
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=27.47 E-value=24 Score=35.33 Aligned_cols=32 Identities=34% Similarity=0.897 Sum_probs=24.4
Q ss_pred CcccccCcCCCCCcccccccc---------ccccc-cccccc
Q 004044 436 NVICSECHQGGDDGLMLLCDI---------CDSSA-HTYCVG 467 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~---------Cd~s~-H~~CL~ 467 (777)
...|.+|........+|+|.. |+.+| |..||+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLd 43 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLD 43 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHH
Confidence 468999999988889999985 44444 666765
No 218
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=27.37 E-value=15 Score=31.40 Aligned_cols=27 Identities=30% Similarity=0.794 Sum_probs=22.2
Q ss_pred ccccccccccccccccccCCCCCCCCCccccCCC
Q 004044 450 LMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCR 483 (777)
Q Consensus 450 ~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~ 483 (777)
.|+.|.+|+..-|..|++|. -+|-.|+
T Consensus 42 AMi~Cq~CGAFCHDDCIgps-------kLCvsCl 68 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPS-------KLCVSCL 68 (69)
T ss_pred HHHHHhhccchhccccccHH-------HHhHhhc
Confidence 59999999999999999985 3566664
No 219
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=27.36 E-value=22 Score=43.82 Aligned_cols=33 Identities=18% Similarity=0.501 Sum_probs=25.2
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
..|-.|.-.+.+. .=+++.|++.||..|+..|-
T Consensus 230 ~mC~~C~~tlfn~--hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 230 EMCDRCETTLFNI--HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred hhhhhhcccccce--eEEccccCCeeeecchhhcc
Confidence 5699998764322 34567799999999999993
No 220
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.98 E-value=14 Score=25.15 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=5.9
Q ss_pred hcCCCCCccccc
Q 004044 379 KVESRCPLCKQR 390 (777)
Q Consensus 379 ~~~~~CP~CR~~ 390 (777)
.....||.|..+
T Consensus 11 ~~~~fC~~CG~~ 22 (23)
T PF13240_consen 11 DDAKFCPNCGTP 22 (23)
T ss_pred CcCcchhhhCCc
Confidence 334446666543
No 221
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=26.96 E-value=28 Score=39.23 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=9.7
Q ss_pred CCCCCcccCccchhhhhccCC
Q 004044 1 MGRGGKVGSKQDFKRRARSKD 21 (777)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (777)
|+-+|+.+.+..|+|-.+--+
T Consensus 6 ~~~~~RSrRanaGnKls~LLe 26 (390)
T KOG2897|consen 6 MLAAGRSRRANAGNKLSKLLE 26 (390)
T ss_pred hhhhccccccccchHHHHHhh
Confidence 334455544555555444333
No 222
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.70 E-value=36 Score=42.97 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=33.7
Q ss_pred cCCcccccccccccccccceeecCCC-----CcccHhhHHHHHhcCCCCCccccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.....|+-|-.... ...++.|| ..||..|- +......||.|.......
T Consensus 624 Vg~RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 624 IGRRKCPSCGKETF----YRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPY 676 (1121)
T ss_pred ccCccCCCCCCcCC----cccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCcc
Confidence 34567999987643 45778898 46999993 334446699998876554
No 223
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=26.58 E-value=38 Score=35.75 Aligned_cols=27 Identities=26% Similarity=0.726 Sum_probs=21.3
Q ss_pred cccHhhHHHHHhcCCCCCccccccccc
Q 004044 368 YFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 368 ~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
.-|..|.+.-..+...||+|+......
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSr 276 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSR 276 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccC
Confidence 467888888878889999998775543
No 224
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.47 E-value=50 Score=31.35 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=33.0
Q ss_pred cccccccccccccc----------cceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 344 QVCGICLSEEDKRR----------LRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 344 ~~C~ICle~~~~~~----------~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
..|--|+..|.... ..-..+.|.+.||.+|=.-+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999998875321 1122577999999999887777777799994
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.19 E-value=36 Score=35.59 Aligned_cols=15 Identities=40% Similarity=0.957 Sum_probs=11.6
Q ss_pred CCCCCcccccccccc
Q 004044 381 ESRCPLCKQRFKTIT 395 (777)
Q Consensus 381 ~~~CP~CR~~~~~i~ 395 (777)
..+||+|.+.|.+-.
T Consensus 5 ~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 5 KITCPVCGKEFKTKK 19 (214)
T ss_pred ceECCCCCCeeeeeE
Confidence 346999999987754
No 226
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.14 E-value=41 Score=39.71 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=24.1
Q ss_pred cccccCcCCCCCcccccccccccc--c--------ccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSS--A--------HTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s--~--------H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|..|+.. ..|..|+.+ | |.+|-... .+ .|.||.|-..
T Consensus 214 ~~C~~Cg~~------~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~-~~---~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYI------LCCPNCDVSLTYHKKEGKLRCHYCGYQE-PI---PKTCPQCGSE 262 (505)
T ss_pred eEhhhCcCc------cCCCCCCCceEEecCCCeEEcCCCcCcC-CC---CCCCCCCCCC
Confidence 578888764 448888754 3 33453321 23 4999999764
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=30 Score=42.77 Aligned_cols=40 Identities=28% Similarity=0.546 Sum_probs=31.2
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..|..|+..-+-. +.--.|+.+||..|+. .+.-.||.|+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE------DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc------cCcccCCccch
Confidence 5899998875522 2234689999999998 56778999998
No 228
>PLN02400 cellulose synthase
Probab=25.18 E-value=46 Score=42.53 Aligned_cols=50 Identities=18% Similarity=0.510 Sum_probs=40.2
Q ss_pred cCCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 434 YENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 434 ~e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
....+|.+|+.. .+.+..+-|..|.-+.|.-|+.- +.-+|+-.||.|...
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTR 87 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe--ecccCCccCcccCCc
Confidence 355799999875 23446788999999999999974 677899999999764
No 229
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.12 E-value=37 Score=43.33 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=22.1
Q ss_pred CcccccCcCCCCCccccccc--cccccccccccc
Q 004044 436 NVICSECHQGGDDGLMLLCD--ICDSSAHTYCVG 467 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd--~Cd~s~H~~CL~ 467 (777)
...|.+|...+ .+..+-|. .|..+||-+|-.
T Consensus 329 kL~cy~cK~~~-~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 329 KLTCYICKQKG-LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred hceeeeeccCC-CCcceecchhhhhhhhhhhhHh
Confidence 36799998876 23355565 488889999965
No 230
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.75 E-value=53 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=18.2
Q ss_pred CCcccHhhHHHHHh---------cCCCCCcccc
Q 004044 366 SHYFCFTCIMEWSK---------VESRCPLCKQ 389 (777)
Q Consensus 366 ~H~FC~~CI~~w~~---------~~~~CP~CR~ 389 (777)
.-.||..||..+.. ..+.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 77899999986542 2366999975
No 231
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=27 Score=37.78 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=34.5
Q ss_pred cCCcccccCcCCCCCcc-------cccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 434 YENVICSECHQGGDDGL-------MLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 434 ~e~~~C~vC~~~~~~~~-------lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
.++-+|.+|++.-+... -++=-.|+..||-+|..-. -+--..-.||.|...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW-civGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW-CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh-eeecCCCCCchHHHH
Confidence 46679999998744222 3445578999999998854 122234689999863
No 232
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.74 E-value=44 Score=37.08 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=26.0
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
.|-.|.+...... .-....|.++||.+|=.--...-..||-|.
T Consensus 332 ~Cf~C~~~~~~~~-~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSG-RYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCC-cEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 3777754433221 224456888999888764444445588885
No 233
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.73 E-value=27 Score=38.66 Aligned_cols=44 Identities=25% Similarity=0.556 Sum_probs=29.9
Q ss_pred Ccccccccccccccccceee-cC--CCCcccHhhHHHHHhcCCCCCccc
Q 004044 343 KQVCGICLSEEDKRRLRGTL-NC--CSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l-~~--C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
...||||-..-.-. ...+ .. =.+.+|.-|-..|.-....||.|.
T Consensus 187 ~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg 233 (309)
T PRK03564 187 RQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCE 233 (309)
T ss_pred CCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCC
Confidence 46799998753211 0001 11 236689999999998888999996
No 234
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=23.64 E-value=46 Score=38.93 Aligned_cols=48 Identities=29% Similarity=0.697 Sum_probs=37.5
Q ss_pred cCcCCCC-CcccccccccccccccccccCCCCCCCCCccccCCCCCCCC
Q 004044 441 ECHQGGD-DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALG 488 (777)
Q Consensus 441 vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~~~g 488 (777)
.|+..+. ...++-|+.|..+-|.+|++.....+...+.|..|......
T Consensus 90 ~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 90 DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKE 138 (508)
T ss_pred ccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeecccccc
Confidence 5777777 88899999999999999999762222356789999886443
No 235
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=22.95 E-value=71 Score=33.24 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=49.7
Q ss_pred cccceeccccccccCCCCCCCCccccccCCCCccCCCCCcccccccccchhHHHHHHHHHHHHHHHhh
Q 004044 670 ANGSVNLTLWPELAGINSLPSFGQLHQRSSLSHIGSDGFAIPFTAKEEFDSHVAKEQLQSVVKSHLKN 737 (777)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (777)
.|++|+|+||.+. |- .+|.+|+++ |--.+|++++=+.|---..|+-|++..---|+.|..+
T Consensus 49 dg~~v~L~LwDTA-Gq---edYDrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~ 109 (198)
T KOG0393|consen 49 DGKPVELGLWDTA-GQ---EDYDRLRPL---SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN 109 (198)
T ss_pred CCCEEEEeeeecC-CC---ccccccccc---CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC
Confidence 5999999999987 64 466778866 5556699988888888889999999988888888744
No 236
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=34 Score=41.97 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=28.1
Q ss_pred cccccccccccccc---cceeecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 344 QVCGICLSEEDKRR---LRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 344 ~~C~ICle~~~~~~---~~~~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
..|..|+....... ...+..-|+|.||..|+...+.+.. |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 36999998754221 1123344999999999986654443 6655
No 237
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=22.39 E-value=26 Score=38.07 Aligned_cols=28 Identities=36% Similarity=0.748 Sum_probs=20.3
Q ss_pred cCCC-CcccHhhHHHHH--hcCCCCCccccc
Q 004044 363 NCCS-HYFCFTCIMEWS--KVESRCPLCKQR 390 (777)
Q Consensus 363 ~~C~-H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (777)
+.|. -|||+.|+---. ...+.||.|+..
T Consensus 238 ~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 238 PGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 3487 999999996322 345789999754
No 238
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.08 E-value=38 Score=39.80 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.4
Q ss_pred ccccccc
Q 004044 461 AHTYCVG 467 (777)
Q Consensus 461 ~H~~CL~ 467 (777)
||..||.
T Consensus 28 yCp~CL~ 34 (483)
T PF05502_consen 28 YCPNCLF 34 (483)
T ss_pred ECccccc
Confidence 4445554
No 239
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=22.08 E-value=42 Score=40.87 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=21.4
Q ss_pred cccccCcCCCCCcccccc-cccccccccccccC
Q 004044 437 VICSECHQGGDDGLMLLC-DICDSSAHTYCVGL 468 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllC-d~Cd~s~H~~CL~p 468 (777)
.+|.+|..... .-+.+| -.|..+||..|-.-
T Consensus 381 lvC~LCk~k~G-ACIqCs~k~C~t~fHv~CA~~ 412 (893)
T KOG0954|consen 381 LVCNLCKVKSG-ACIQCSNKTCRTAFHVTCAFE 412 (893)
T ss_pred HHHHHhcccCc-ceEEecccchhhhccchhhhh
Confidence 68999987543 124444 36999999999763
No 240
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.83 E-value=52 Score=42.05 Aligned_cols=49 Identities=22% Similarity=0.557 Sum_probs=39.4
Q ss_pred CCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...+|.+|+.. .+....+-|..|.-+.|.-|+.- +.-+|+-.||.|...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 45799999875 23446788999999999999974 667899999999764
No 241
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.81 E-value=54 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=0.0
Q ss_pred CCcccccccccccccccceee-cCCCCcccHhh
Q 004044 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTC 373 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~C 373 (777)
....|.+|...|.-....+.+ ..|.|.+|..|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C 85 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKC 85 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTS
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCcc
No 242
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.38 E-value=32 Score=27.84 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=5.7
Q ss_pred CCCcccccccc
Q 004044 383 RCPLCKQRFKT 393 (777)
Q Consensus 383 ~CP~CR~~~~~ 393 (777)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999888754
No 243
>COG1773 Rubredoxin [Energy production and conversion]
Probab=21.23 E-value=58 Score=27.10 Aligned_cols=15 Identities=27% Similarity=0.838 Sum_probs=11.1
Q ss_pred CCCCCCCccccCCCCC
Q 004044 470 RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 470 ~~vP~g~W~C~~C~~~ 485 (777)
..+| .+|.||.|-..
T Consensus 31 edlP-d~w~CP~Cg~~ 45 (55)
T COG1773 31 EDLP-DDWVCPECGVG 45 (55)
T ss_pred hhCC-CccCCCCCCCC
Confidence 3454 57999999864
No 244
>PLN02436 cellulose synthase A
Probab=21.09 E-value=60 Score=41.49 Aligned_cols=50 Identities=22% Similarity=0.465 Sum_probs=39.8
Q ss_pred cCCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 434 YENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 434 ~e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
....+|.+|+.. .+....+-|..|.-+.|..|+.- +.-+|+-.||.|...
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~ 87 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY--ERREGNQACPQCKTR 87 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 345799999875 23446778999999999999974 667889999999764
No 245
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=20.97 E-value=65 Score=37.52 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.1
Q ss_pred CCCCCcccCccch
Q 004044 1 MGRGGKVGSKQDF 13 (777)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (777)
||+.|...++.+.
T Consensus 1 ~gk~r~~~~rsg~ 13 (517)
T KOG3118|consen 1 MGKKRGTLKRSGK 13 (517)
T ss_pred CCCCCCccccccc
Confidence 5555544433333
No 246
>PF12773 DZR: Double zinc ribbon
Probab=20.93 E-value=1e+02 Score=24.26 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=4.2
Q ss_pred ccccccccc
Q 004044 451 MLLCDICDS 459 (777)
Q Consensus 451 lllCd~Cd~ 459 (777)
..+|..|+.
T Consensus 12 ~~fC~~CG~ 20 (50)
T PF12773_consen 12 AKFCPHCGT 20 (50)
T ss_pred ccCChhhcC
Confidence 444544443
No 247
>PLN02189 cellulose synthase
Probab=20.93 E-value=59 Score=41.42 Aligned_cols=49 Identities=22% Similarity=0.551 Sum_probs=39.6
Q ss_pred CCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...+|.+|+.. .+....+-|.-|.-+.|..|+.- +.-+|+-.||.|...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 45799999876 33446788999999999999974 667899999999764
No 248
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=74 Score=35.97 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=29.5
Q ss_pred CCcccccCcCC-CCCc---------ccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQG-GDDG---------LMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~-~~~~---------~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
.+..|.+|..+ -.+. ..-----|+..+|+.||... -+..-.||-|+.+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW---~ERqQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNW---LERQQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHH---HHhccCCCcccCc
Confidence 45789999776 1111 01111236667999999854 1223469999987
No 249
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=20.84 E-value=6.2e+02 Score=30.24 Aligned_cols=65 Identities=3% Similarity=-0.047 Sum_probs=34.7
Q ss_pred CCCCCCccccchhHHHHHHhhhccCCCCccccCCCCCcchhhhhhhhccCCcccccccceecccccc
Q 004044 615 VVQPARGQETEPLHQAIFEERSHDHPTSLVENGDFLAPRLNYLRRQAVQDPTISTANGSVNLTLWPE 681 (777)
Q Consensus 615 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (777)
++.++...+.+++...+|.-+.+..-+|+|.+...+...+.....-+.+. -...++++..+|.+.
T Consensus 391 ~l~~~f~s~~sssl~~~~~~~~~~~tsP~~~~~~~~~~~~e~s~~~~~~~--~~~~~r~l~~~l~~~ 455 (528)
T KOG1595|consen 391 NLSELFSSPDSSSLNPQLQVLSSAPTSPVFTDTASFGSSVESSPAMEGRS--QVMSSRELRASLKRS 455 (528)
T ss_pred cchhhhcCccccccchhhhhcccCCcCCcCCcccccccccccchhhhccc--ccccchhhhhhhccc
Confidence 33444555556777777777775555888777554444443111111111 334455556666665
No 250
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=66 Score=37.26 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=6.4
Q ss_pred ccHhhHHHHHh
Q 004044 369 FCFTCIMEWSK 379 (777)
Q Consensus 369 FC~~CI~~w~~ 379 (777)
|=-.-+.+|..
T Consensus 299 yrN~~L~KW~d 309 (483)
T KOG2773|consen 299 YRNKVLRKWHD 309 (483)
T ss_pred HHHHHHHHHhh
Confidence 43456667764
No 251
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.51 E-value=49 Score=40.32 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.4
Q ss_pred HHHhhhhccccccc
Q 004044 754 YIQRHSRKFNSHHL 767 (777)
Q Consensus 754 ~~~~~~~~~~~~~~ 767 (777)
||+..-|++|--|-
T Consensus 785 F~~~~l~kn~~~~~ 798 (822)
T KOG2141|consen 785 FLKHYLRKNNQLDK 798 (822)
T ss_pred HHHHHHHhhHHhhh
Confidence 55555555554443
No 252
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=20.38 E-value=50 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=25.2
Q ss_pred CcccccCcCCCCCcccccccc--cccccccccccC
Q 004044 436 NVICSECHQGGDDGLMLLCDI--CDSSAHTYCVGL 468 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~--Cd~s~H~~CL~p 468 (777)
...|.+|+... +..+-|.. |...||..|...
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 36899999873 34788998 999999999764
No 253
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=20.27 E-value=59 Score=36.60 Aligned_cols=39 Identities=38% Similarity=0.797 Sum_probs=31.7
Q ss_pred cccccccccccccccc--ccCC-CCCC-CCCccccCCCCCCCC
Q 004044 450 LMLLCDICDSSAHTYC--VGLG-RVVP-EGNWYCDGCRPVALG 488 (777)
Q Consensus 450 ~lllCd~Cd~s~H~~C--L~pp-~~vP-~g~W~C~~C~~~~~g 488 (777)
.++-|+.|..+||..| ++++ ..+| ...|+|..|....-|
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhhh
Confidence 5788999999999999 9998 4444 567999999876433
No 254
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=20.18 E-value=62 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=19.3
Q ss_pred ccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 452 LLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 452 llCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..|..|+..||..=.. |.....|..|-.
T Consensus 2 r~C~~Cg~~Yh~~~~p-----P~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP-----PKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBCTTTTE
T ss_pred cCcCCCCCccccccCC-----CCCCCccCCCCC
Confidence 3588999999975432 356688888854
Done!