Query 004044
Match_columns 777
No_of_seqs 592 out of 2612
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.2 3E-12 1E-16 117.7 3.7 100 342-491 6-110 (111)
2 2kwj_A Zinc finger protein DPF 99.2 1.4E-11 4.8E-16 114.0 4.5 47 438-484 60-107 (114)
3 4ap4_A E3 ubiquitin ligase RNF 99.1 6.8E-12 2.3E-16 116.9 1.4 110 342-485 6-122 (133)
4 3v43_A Histone acetyltransfera 99.1 8.3E-11 2.8E-15 108.4 8.3 93 343-484 5-111 (112)
5 1iym_A EL5; ring-H2 finger, ub 99.1 6.7E-11 2.3E-15 94.2 3.9 51 342-392 4-54 (55)
6 2ecm_A Ring finger and CHY zin 99.0 1E-10 3.5E-15 93.0 4.4 51 342-392 4-54 (55)
7 4ayc_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 111.1 3.5 49 343-395 53-101 (138)
8 2ep4_A Ring finger protein 24; 99.0 2.1E-10 7.1E-15 97.0 4.7 53 342-395 14-66 (74)
9 2yur_A Retinoblastoma-binding 99.0 2.4E-10 8.3E-15 97.0 4.5 47 343-393 15-64 (74)
10 2kiz_A E3 ubiquitin-protein li 99.0 2.5E-10 8.5E-15 95.2 4.2 53 342-395 13-65 (69)
11 1f62_A Transcription factor WS 99.0 1.8E-10 6E-15 91.4 3.1 47 438-484 2-49 (51)
12 2ea6_A Ring finger protein 4; 99.0 1.8E-10 6.2E-15 95.5 3.1 51 342-392 14-67 (69)
13 1chc_A Equine herpes virus-1 r 99.0 3.6E-10 1.2E-14 93.9 4.6 53 342-397 4-56 (68)
14 2d8t_A Dactylidin, ring finger 99.0 2.2E-10 7.5E-15 96.4 3.0 48 342-393 14-61 (71)
15 3ng2_A RNF4, snurf, ring finge 99.0 2.1E-10 7.3E-15 95.8 2.9 52 342-393 9-63 (71)
16 2djb_A Polycomb group ring fin 98.9 4.5E-10 1.5E-14 94.7 4.8 48 343-394 15-63 (72)
17 2ect_A Ring finger protein 126 98.9 4.5E-10 1.5E-14 95.9 4.5 52 342-394 14-65 (78)
18 2csy_A Zinc finger protein 183 98.9 3.8E-10 1.3E-14 97.2 4.0 47 342-392 14-60 (81)
19 1mm2_A MI2-beta; PHD, zinc fin 98.9 7.9E-10 2.7E-14 91.1 5.6 48 435-485 8-56 (61)
20 1x4j_A Ring finger protein 38; 98.9 2.7E-10 9.3E-15 96.7 2.8 51 342-393 22-72 (75)
21 1fp0_A KAP-1 corepressor; PHD 98.9 9.9E-10 3.4E-14 96.7 5.9 48 435-485 24-72 (88)
22 2xeu_A Ring finger protein 4; 98.9 3.5E-10 1.2E-14 92.3 2.7 51 343-393 3-56 (64)
23 3lrq_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 100.8 3.7 48 342-393 21-70 (100)
24 2ct2_A Tripartite motif protei 98.9 6.7E-10 2.3E-14 96.6 4.5 52 342-393 14-68 (88)
25 1t1h_A Gspef-atpub14, armadill 98.9 5E-10 1.7E-14 95.6 3.6 48 342-393 7-55 (78)
26 2l0b_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 99.5 3.2 51 342-393 39-89 (91)
27 1v87_A Deltex protein 2; ring- 98.9 6.4E-10 2.2E-14 101.8 4.4 52 343-394 25-95 (114)
28 2ysl_A Tripartite motif-contai 98.9 7.5E-10 2.6E-14 93.1 4.2 48 342-393 19-69 (73)
29 2ecy_A TNF receptor-associated 98.9 7.1E-10 2.4E-14 91.8 3.8 48 342-393 14-62 (66)
30 2e6r_A Jumonji/ARID domain-con 98.9 4.2E-10 1.5E-14 100.3 2.3 51 435-485 15-66 (92)
31 1g25_A CDK-activating kinase a 98.9 9.8E-10 3.4E-14 90.7 4.1 52 342-393 2-55 (65)
32 1xwh_A Autoimmune regulator; P 98.9 6.1E-10 2.1E-14 93.2 2.7 48 435-485 7-55 (66)
33 2ecl_A Ring-box protein 2; RNF 98.9 5.6E-10 1.9E-14 96.7 2.6 52 342-393 14-76 (81)
34 2ecn_A Ring finger protein 141 98.9 5.2E-10 1.8E-14 93.5 2.3 48 342-394 14-61 (70)
35 2lri_C Autoimmune regulator; Z 98.9 1.1E-09 3.9E-14 91.6 4.3 48 435-485 11-59 (66)
36 3fl2_A E3 ubiquitin-protein li 98.9 1.2E-09 4E-14 101.8 4.6 47 343-393 52-99 (124)
37 3ztg_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 96.3 3.6 47 342-392 12-61 (92)
38 2ecw_A Tripartite motif-contai 98.8 1.5E-09 5.2E-14 93.3 4.1 48 342-393 18-71 (85)
39 3dpl_R Ring-box protein 1; ubi 98.8 1.8E-09 6E-14 98.7 4.3 52 342-393 36-101 (106)
40 2e6s_A E3 ubiquitin-protein li 98.8 1.8E-09 6.3E-14 93.0 4.2 48 437-484 27-76 (77)
41 2egp_A Tripartite motif-contai 98.8 7E-10 2.4E-14 94.6 1.5 48 342-393 11-65 (79)
42 2y43_A E3 ubiquitin-protein li 98.8 1.7E-09 5.7E-14 96.7 4.0 47 343-393 22-69 (99)
43 2ckl_A Polycomb group ring fin 98.8 1.8E-09 6.1E-14 98.1 4.0 49 342-394 14-63 (108)
44 3asl_A E3 ubiquitin-protein li 98.8 1.9E-09 6.4E-14 91.3 3.8 47 438-484 20-68 (70)
45 2ecv_A Tripartite motif-contai 98.8 3.2E-09 1.1E-13 91.3 5.2 48 342-393 18-71 (85)
46 2l5u_A Chromodomain-helicase-D 98.8 1.4E-09 4.6E-14 89.7 2.7 47 435-484 10-57 (61)
47 2ku3_A Bromodomain-containing 98.8 9.1E-10 3.1E-14 93.5 1.4 49 435-484 15-65 (71)
48 2kr4_A Ubiquitin conjugation f 98.8 2.4E-09 8.2E-14 93.7 4.0 48 342-393 13-60 (85)
49 2ysj_A Tripartite motif-contai 98.8 2.7E-09 9.3E-14 87.3 4.1 42 342-387 19-63 (63)
50 2puy_A PHD finger protein 21A; 98.8 1.5E-09 5.2E-14 89.0 2.4 47 435-484 4-51 (60)
51 2yql_A PHD finger protein 21A; 98.8 1.6E-09 5.5E-14 87.7 2.4 47 435-484 8-55 (56)
52 3shb_A E3 ubiquitin-protein li 98.8 3.3E-09 1.1E-13 91.4 3.7 47 438-484 28-76 (77)
53 1z6u_A NP95-like ring finger p 98.7 3.6E-09 1.2E-13 102.3 3.9 48 343-394 78-126 (150)
54 2kre_A Ubiquitin conjugation f 98.7 3.4E-09 1.2E-13 95.7 3.5 48 342-393 28-75 (100)
55 1wev_A Riken cDNA 1110020M19; 98.7 2E-09 6.7E-14 95.2 1.7 50 436-485 16-72 (88)
56 1jm7_A BRCA1, breast cancer ty 98.7 3.7E-09 1.2E-13 96.1 3.5 47 343-393 21-70 (112)
57 2ecj_A Tripartite motif-contai 98.7 4.6E-09 1.6E-13 84.2 3.5 42 342-387 14-58 (58)
58 2l43_A N-teminal domain from h 98.7 1.5E-09 5E-14 96.0 0.6 49 435-484 24-74 (88)
59 1wgm_A Ubiquitin conjugation f 98.7 5.5E-09 1.9E-13 94.0 4.0 48 342-393 21-69 (98)
60 2yt5_A Metal-response element- 98.7 2.3E-09 7.7E-14 89.5 1.3 51 435-485 5-61 (66)
61 3l11_A E3 ubiquitin-protein li 98.7 2.2E-09 7.5E-14 98.6 1.0 47 343-393 15-62 (115)
62 2ckl_B Ubiquitin ligase protei 98.7 5.2E-09 1.8E-13 102.2 3.6 47 343-393 54-102 (165)
63 1e4u_A Transcriptional repress 98.7 1.4E-08 4.7E-13 87.7 5.3 52 342-395 10-64 (78)
64 3hct_A TNF receptor-associated 98.7 6.4E-09 2.2E-13 96.1 3.1 47 343-393 18-65 (118)
65 4a0k_B E3 ubiquitin-protein li 98.7 2.9E-09 9.8E-14 98.9 0.2 52 342-393 47-112 (117)
66 1rmd_A RAG1; V(D)J recombinati 98.7 1E-08 3.5E-13 94.2 3.8 48 343-394 23-71 (116)
67 1bor_A Transcription factor PM 98.7 5.2E-09 1.8E-13 84.3 1.5 46 341-393 4-49 (56)
68 1jm7_B BARD1, BRCA1-associated 98.6 9.3E-09 3.2E-13 94.9 3.3 45 342-392 21-66 (117)
69 2d8s_A Cellular modulator of i 98.6 1.8E-08 6.2E-13 87.4 4.3 51 342-394 14-71 (80)
70 3o36_A Transcription intermedi 98.6 1.5E-08 5.3E-13 100.9 4.2 47 436-485 4-51 (184)
71 3u5n_A E3 ubiquitin-protein li 98.6 1.3E-08 4.6E-13 103.3 3.8 48 435-485 6-54 (207)
72 3ask_A E3 ubiquitin-protein li 98.6 1.2E-08 4.3E-13 104.2 3.2 48 437-484 175-224 (226)
73 4ic3_A E3 ubiquitin-protein li 98.6 1.2E-08 4E-13 86.9 2.1 45 343-395 24-69 (74)
74 3knv_A TNF receptor-associated 98.6 1.5E-08 5.3E-13 96.9 2.7 47 342-392 30-77 (141)
75 2c2l_A CHIP, carboxy terminus 98.6 2.3E-08 8E-13 104.2 4.1 48 342-393 207-255 (281)
76 2ro1_A Transcription intermedi 98.6 2.9E-08 9.9E-13 99.5 4.3 46 437-485 3-49 (189)
77 2vje_A E3 ubiquitin-protein li 98.5 2.7E-08 9.2E-13 82.4 2.6 50 342-395 7-59 (64)
78 2k16_A Transcription initiatio 98.5 2.5E-08 8.6E-13 85.2 2.5 50 435-484 17-67 (75)
79 4ap4_A E3 ubiquitin ligase RNF 98.5 3E-08 1E-12 92.1 2.7 52 342-393 71-125 (133)
80 2yu4_A E3 SUMO-protein ligase 98.5 4.5E-08 1.5E-12 87.1 3.6 45 342-390 6-59 (94)
81 2vje_B MDM4 protein; proto-onc 98.5 4.7E-08 1.6E-12 80.7 2.5 49 343-395 7-58 (63)
82 2y1n_A E3 ubiquitin-protein li 98.5 6.3E-08 2.1E-12 106.6 3.9 48 344-395 333-381 (389)
83 2f42_A STIP1 homology and U-bo 98.4 8.5E-08 2.9E-12 95.3 4.0 47 343-393 106-153 (179)
84 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.7E-12 93.1 3.1 48 342-393 17-65 (170)
85 2ct0_A Non-SMC element 1 homol 98.4 2.7E-07 9.3E-12 78.9 4.9 48 343-393 15-64 (74)
86 2ecg_A Baculoviral IAP repeat- 98.4 1.8E-07 6.2E-12 79.5 3.5 44 343-394 25-69 (75)
87 2lv9_A Histone-lysine N-methyl 98.3 3.2E-07 1.1E-11 82.6 4.2 47 437-485 29-76 (98)
88 4gne_A Histone-lysine N-methyl 98.3 3.4E-07 1.2E-11 83.6 3.8 52 435-490 14-67 (107)
89 2ysm_A Myeloid/lymphoid or mix 98.2 1.6E-06 5.5E-11 79.4 7.4 87 435-532 6-94 (111)
90 2ea5_A Cell growth regulator w 98.2 6.5E-07 2.2E-11 75.1 4.3 46 342-395 14-60 (68)
91 2yho_A E3 ubiquitin-protein li 98.2 3.1E-07 1.1E-11 79.2 1.9 44 344-395 19-63 (79)
92 1wen_A Inhibitor of growth fam 98.2 1E-06 3.5E-11 74.7 4.6 48 435-485 15-65 (71)
93 3htk_C E3 SUMO-protein ligase 98.2 4.1E-07 1.4E-11 94.9 2.5 49 341-393 179-232 (267)
94 1weu_A Inhibitor of growth fam 98.1 1.9E-06 6.4E-11 76.5 4.9 51 432-485 32-85 (91)
95 2bay_A PRE-mRNA splicing facto 98.1 1.3E-06 4.3E-11 71.9 2.7 47 343-393 3-50 (61)
96 2vnf_A ING 4, P29ING4, inhibit 98.1 6.5E-07 2.2E-11 73.4 0.8 47 435-484 9-58 (60)
97 3t6p_A Baculoviral IAP repeat- 98.1 8.4E-07 2.9E-11 96.7 1.9 46 342-395 294-340 (345)
98 3c6w_A P28ING5, inhibitor of g 98.0 8.2E-07 2.8E-11 72.6 0.5 47 435-484 8-57 (59)
99 2g6q_A Inhibitor of growth pro 98.0 1.2E-06 4.1E-11 72.4 0.5 47 435-484 10-59 (62)
100 2jmi_A Protein YNG1, ING1 homo 98.0 2.6E-06 8.8E-11 75.4 2.6 47 435-484 25-75 (90)
101 1wim_A KIAA0161 protein; ring 97.9 2.3E-06 7.8E-11 75.7 1.3 47 343-390 5-61 (94)
102 3k1l_B Fancl; UBC, ring, RWD, 97.9 2.4E-06 8.3E-11 91.9 1.7 52 342-393 307-373 (381)
103 1vyx_A ORF K3, K3RING; zinc-bi 97.9 6.9E-06 2.4E-10 67.3 3.4 48 342-393 5-59 (60)
104 2lbm_A Transcriptional regulat 97.8 8.7E-06 3E-10 77.8 2.5 47 436-485 63-117 (142)
105 3v43_A Histone acetyltransfera 97.7 2E-05 6.7E-10 72.5 4.5 90 437-536 6-106 (112)
106 2kwj_A Zinc finger protein DPF 97.7 1.3E-05 4.6E-10 73.8 3.4 53 437-489 2-66 (114)
107 3vk6_A E3 ubiquitin-protein li 97.7 1.6E-05 5.5E-10 71.1 3.4 48 345-395 3-51 (101)
108 3o70_A PHD finger protein 13; 97.6 1.8E-05 6E-10 66.5 2.2 51 432-484 15-66 (68)
109 1x4i_A Inhibitor of growth pro 97.6 1.5E-05 5.2E-10 67.3 1.2 46 436-484 6-54 (70)
110 1we9_A PHD finger family prote 97.4 4.3E-05 1.5E-09 63.0 1.5 51 435-485 5-58 (64)
111 1wew_A DNA-binding family prot 97.3 6.7E-05 2.3E-09 64.5 1.9 50 435-485 15-72 (78)
112 1wee_A PHD finger family prote 97.3 6.8E-05 2.3E-09 63.5 1.8 48 436-484 16-65 (72)
113 1wep_A PHF8; structural genomi 97.2 0.00013 4.5E-09 62.8 2.3 49 436-485 12-63 (79)
114 2rsd_A E3 SUMO-protein ligase 97.2 9.9E-05 3.4E-09 61.8 1.4 47 437-484 11-64 (68)
115 3ql9_A Transcriptional regulat 97.0 8.2E-05 2.8E-09 69.9 -0.3 47 436-485 57-111 (129)
116 2ri7_A Nucleosome-remodeling f 97.0 7.8E-05 2.7E-09 73.2 -1.3 49 435-484 7-58 (174)
117 1wem_A Death associated transc 96.9 7E-05 2.4E-09 64.0 -1.7 48 436-484 16-69 (76)
118 2kgg_A Histone demethylase jar 96.9 0.00018 6E-09 57.1 0.6 47 437-483 3-52 (52)
119 3o7a_A PHD finger protein 13 v 96.9 0.00022 7.6E-09 56.5 1.0 46 437-484 5-51 (52)
120 2xb1_A Pygopus homolog 2, B-ce 96.9 0.00017 5.9E-09 65.5 0.2 49 437-485 4-61 (105)
121 2vpb_A Hpygo1, pygopus homolog 96.9 9.3E-05 3.2E-09 61.6 -1.5 47 437-483 9-64 (65)
122 3nw0_A Non-structural maintena 96.7 0.0011 3.7E-08 68.6 4.5 48 343-393 180-229 (238)
123 4gne_A Histone-lysine N-methyl 96.2 0.002 6.8E-08 58.7 2.9 38 438-479 60-98 (107)
124 1weq_A PHD finger protein 7; s 95.8 0.017 5.7E-07 50.4 6.4 67 415-485 2-79 (85)
125 3lqh_A Histone-lysine N-methyl 95.8 0.003 1E-07 62.8 2.0 49 437-485 3-63 (183)
126 3kqi_A GRC5, PHD finger protei 95.7 0.0016 5.4E-08 55.5 -0.5 47 437-484 11-60 (75)
127 3pur_A Lysine-specific demethy 95.5 0.0041 1.4E-07 70.6 2.2 36 449-484 56-93 (528)
128 1wil_A KIAA1045 protein; ring 95.3 0.0063 2.1E-07 52.6 2.0 50 435-485 14-76 (89)
129 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.019 6.6E-07 50.8 4.3 33 342-376 2-35 (101)
130 3kv5_D JMJC domain-containing 94.8 0.0029 1E-07 71.9 -1.8 49 435-484 36-87 (488)
131 2ko5_A Ring finger protein Z; 94.7 0.012 4.1E-07 51.9 2.0 50 341-395 26-75 (99)
132 4bbq_A Lysine-specific demethy 93.0 0.037 1.3E-06 50.6 2.1 37 448-484 72-113 (117)
133 3kv4_A PHD finger protein 8; e 92.5 0.0097 3.3E-07 66.8 -2.9 45 440-484 8-55 (447)
134 2ku7_A MLL1 PHD3-CYP33 RRM chi 88.1 0.23 7.8E-06 45.5 2.6 35 451-485 2-44 (140)
135 1weo_A Cellulose synthase, cat 85.8 0.78 2.7E-05 40.1 4.4 53 342-394 15-71 (93)
136 1we9_A PHD finger family prote 84.5 0.22 7.6E-06 40.5 0.4 49 342-390 5-58 (64)
137 2lri_C Autoimmune regulator; Z 83.6 0.53 1.8E-05 39.0 2.3 44 343-390 12-59 (66)
138 1wil_A KIAA1045 protein; ring 77.6 1.6 5.5E-05 37.8 3.4 34 342-377 14-47 (89)
139 2vpb_A Hpygo1, pygopus homolog 77.0 0.52 1.8E-05 38.9 0.2 47 342-388 7-64 (65)
140 3rsn_A SET1/ASH2 histone methy 76.9 1.1 3.8E-05 44.0 2.5 45 441-485 9-59 (177)
141 2xb1_A Pygopus homolog 2, B-ce 76.1 0.46 1.6E-05 42.9 -0.5 48 344-391 4-62 (105)
142 3lqh_A Histone-lysine N-methyl 75.1 1 3.5E-05 44.6 1.7 49 343-391 2-64 (183)
143 2cs3_A Protein C14ORF4, MY039 73.6 2.4 8.1E-05 36.4 3.3 37 342-379 14-51 (93)
144 3a1b_A DNA (cytosine-5)-methyl 73.6 0.86 3E-05 44.1 0.7 47 436-485 79-134 (159)
145 2k16_A Transcription initiatio 73.1 1.1 3.8E-05 37.5 1.2 48 343-391 18-69 (75)
146 1wep_A PHF8; structural genomi 71.6 2.7 9.1E-05 35.6 3.3 49 342-391 11-64 (79)
147 2pv0_B DNA (cytosine-5)-methyl 69.8 1.4 4.8E-05 48.4 1.4 46 437-485 94-148 (386)
148 1v87_A Deltex protein 2; ring- 69.1 2.4 8.4E-05 37.7 2.6 32 454-485 58-91 (114)
149 2l5u_A Chromodomain-helicase-D 68.5 2.3 7.7E-05 34.4 2.0 44 342-389 10-57 (61)
150 2kgg_A Histone demethylase jar 68.1 2.8 9.4E-05 32.7 2.4 44 345-388 4-52 (52)
151 3u5n_A E3 ubiquitin-protein li 64.9 1.7 5.7E-05 43.5 0.7 44 342-389 6-53 (207)
152 2lbm_A Transcriptional regulat 64.7 4.3 0.00015 38.5 3.5 43 342-388 62-115 (142)
153 1mm2_A MI2-beta; PHD, zinc fin 64.2 1.7 5.9E-05 35.1 0.5 45 342-390 8-56 (61)
154 2ect_A Ring finger protein 126 63.1 5.4 0.00018 32.8 3.4 47 436-485 15-61 (78)
155 3o36_A Transcription intermedi 62.1 2.1 7.3E-05 41.9 0.9 43 343-389 4-50 (184)
156 1weu_A Inhibitor of growth fam 62.1 2.6 9E-05 37.1 1.3 46 342-390 35-85 (91)
157 1xwh_A Autoimmune regulator; P 61.9 1.3 4.4E-05 36.4 -0.6 44 342-389 7-54 (66)
158 1iym_A EL5; ring-H2 finger, ub 60.8 4.8 0.00016 30.7 2.5 46 437-485 6-52 (55)
159 3ql9_A Transcriptional regulat 60.1 5.5 0.00019 37.2 3.2 44 342-389 56-110 (129)
160 2yt5_A Metal-response element- 59.5 2.5 8.4E-05 34.4 0.7 49 342-390 5-61 (66)
161 2ri7_A Nucleosome-remodeling f 58.3 2.5 8.4E-05 40.9 0.5 48 342-390 7-59 (174)
162 1y02_A CARP2, FYVE-ring finger 54.6 2 6.9E-05 39.7 -0.7 47 342-388 18-64 (120)
163 1x4j_A Ring finger protein 38; 54.6 1.9 6.3E-05 35.5 -0.9 48 435-485 22-69 (75)
164 3m62_A Ubiquitin conjugation f 54.1 7.6 0.00026 47.3 3.9 48 342-393 890-938 (968)
165 1joc_A EEA1, early endosomal a 53.1 7.4 0.00025 35.9 2.8 34 343-376 69-102 (125)
166 1f62_A Transcription factor WS 53.0 7.3 0.00025 29.9 2.4 44 345-389 2-49 (51)
167 1wen_A Inhibitor of growth fam 52.2 4.2 0.00014 34.0 0.9 46 342-390 15-65 (71)
168 2ysl_A Tripartite motif-contai 52.0 5.1 0.00017 32.4 1.4 47 436-485 20-66 (73)
169 2ro1_A Transcription intermedi 51.4 4.4 0.00015 40.1 1.1 43 344-390 3-49 (189)
170 2yql_A PHD finger protein 21A; 50.5 2.4 8.2E-05 33.5 -0.8 43 342-388 8-54 (56)
171 1wew_A DNA-binding family prot 50.4 3.4 0.00012 35.0 0.0 47 342-390 15-72 (78)
172 1fp0_A KAP-1 corepressor; PHD 49.9 5 0.00017 35.1 1.1 44 342-389 24-71 (88)
173 1weo_A Cellulose synthase, cat 49.8 4.3 0.00015 35.5 0.6 49 435-485 15-67 (93)
174 2jmo_A Parkin; IBR, E3 ligase, 49.6 3.3 0.00011 35.2 -0.1 21 364-386 55-75 (80)
175 2ku3_A Bromodomain-containing 49.4 5.1 0.00018 33.5 1.0 48 342-389 15-65 (71)
176 3t7l_A Zinc finger FYVE domain 49.2 9.8 0.00033 33.0 2.8 36 342-377 19-54 (90)
177 3l11_A E3 ubiquitin-protein li 49.0 8.5 0.00029 34.2 2.5 44 437-485 16-59 (115)
178 4bbq_A Lysine-specific demethy 48.7 4 0.00014 36.9 0.2 36 436-484 7-42 (117)
179 2ct0_A Non-SMC element 1 homol 48.2 6.8 0.00023 33.0 1.6 45 437-485 16-61 (74)
180 3o70_A PHD finger protein 13; 47.5 4.4 0.00015 33.5 0.3 46 342-389 18-66 (68)
181 2ecm_A Ring finger and CHY zin 47.4 6.4 0.00022 29.9 1.2 47 436-485 5-52 (55)
182 2puy_A PHD finger protein 21A; 47.4 4 0.00014 32.6 0.0 45 342-390 4-52 (60)
183 1wem_A Death associated transc 47.2 4.9 0.00017 33.7 0.5 46 343-390 16-70 (76)
184 2l0b_A E3 ubiquitin-protein li 47.2 4.2 0.00014 34.9 0.1 47 436-485 40-86 (91)
185 2kiz_A E3 ubiquitin-protein li 46.7 2.8 9.6E-05 33.7 -1.0 47 436-485 14-60 (69)
186 2lv9_A Histone-lysine N-methyl 46.6 4.7 0.00016 35.7 0.4 44 344-389 29-75 (98)
187 2l43_A N-teminal domain from h 46.3 5.9 0.0002 34.4 0.9 49 342-390 24-75 (88)
188 1vyx_A ORF K3, K3RING; zinc-bi 46.3 2.7 9.2E-05 33.8 -1.2 48 435-484 5-55 (60)
189 1wee_A PHD finger family prote 45.6 3.2 0.00011 34.5 -0.9 48 342-390 15-66 (72)
190 1z2q_A LM5-1; membrane protein 45.3 11 0.00039 32.1 2.6 35 342-376 20-54 (84)
191 1wev_A Riken cDNA 1110020M19; 45.3 3.7 0.00013 35.6 -0.5 49 343-391 16-73 (88)
192 2yw8_A RUN and FYVE domain-con 45.2 11 0.00036 32.2 2.3 35 342-376 18-52 (82)
193 2ecl_A Ring-box protein 2; RNF 44.3 9.1 0.00031 32.1 1.8 27 456-485 47-73 (81)
194 1vfy_A Phosphatidylinositol-3- 44.2 13 0.00045 30.8 2.8 32 344-375 12-43 (73)
195 1x4u_A Zinc finger, FYVE domai 42.6 12 0.00041 32.0 2.3 34 342-375 13-46 (84)
196 2d8t_A Dactylidin, ring finger 41.8 9.8 0.00034 30.7 1.6 45 435-485 14-58 (71)
197 3nw0_A Non-structural maintena 41.6 12 0.00043 38.2 2.7 46 436-484 180-225 (238)
198 1wd2_A Ariadne-1 protein homol 41.5 5.8 0.0002 32.1 0.1 37 344-380 7-47 (60)
199 3zyq_A Hepatocyte growth facto 41.2 12 0.0004 37.9 2.4 33 344-376 165-197 (226)
200 2ep4_A Ring finger protein 24; 40.4 9 0.00031 31.1 1.1 47 436-485 15-61 (74)
201 1wfk_A Zinc finger, FYVE domai 39.7 14 0.00047 32.0 2.3 36 342-377 8-43 (88)
202 1dvp_A HRS, hepatocyte growth 39.5 12 0.00043 37.4 2.3 33 344-376 162-194 (220)
203 1bor_A Transcription factor PM 38.9 54 0.0018 25.2 5.4 42 435-485 5-46 (56)
204 1e4u_A Transcriptional repress 38.8 12 0.0004 31.6 1.6 47 436-485 11-59 (78)
205 1jm7_A BRCA1, breast cancer ty 38.6 8.2 0.00028 33.9 0.6 46 437-485 22-67 (112)
206 2egp_A Tripartite motif-contai 37.3 18 0.00061 29.5 2.5 47 436-485 12-62 (79)
207 2ecj_A Tripartite motif-contai 36.3 14 0.00049 28.1 1.7 44 436-482 15-58 (58)
208 2d8s_A Cellular modulator of i 36.2 14 0.00049 31.2 1.8 48 436-485 15-67 (80)
209 2jmi_A Protein YNG1, ING1 homo 35.6 8 0.00027 33.9 0.1 45 342-389 25-75 (90)
210 1z60_A TFIIH basal transcripti 35.6 19 0.00064 29.1 2.3 43 344-387 16-58 (59)
211 3k1l_B Fancl; UBC, ring, RWD, 35.5 17 0.00058 39.5 2.6 50 436-485 308-370 (381)
212 2ecv_A Tripartite motif-contai 35.2 9.6 0.00033 31.4 0.5 47 436-485 19-68 (85)
213 4ayc_A E3 ubiquitin-protein li 35.1 9 0.00031 35.4 0.3 43 437-485 54-96 (138)
214 3pfq_A PKC-B, PKC-beta, protei 34.5 21 0.00073 41.6 3.5 31 437-467 114-146 (674)
215 2pv0_B DNA (cytosine-5)-methyl 34.3 23 0.00078 38.9 3.4 44 342-389 92-147 (386)
216 3mpx_A FYVE, rhogef and PH dom 34.2 8.5 0.00029 42.1 0.0 37 342-378 374-410 (434)
217 3a1b_A DNA (cytosine-5)-methyl 33.7 26 0.0009 33.8 3.3 43 342-388 78-132 (159)
218 2e6r_A Jumonji/ARID domain-con 33.0 7.3 0.00025 34.1 -0.6 48 342-390 15-66 (92)
219 2ct7_A Ring finger protein 31; 32.5 7 0.00024 33.6 -0.8 33 346-378 28-62 (86)
220 2ecw_A Tripartite motif-contai 32.3 18 0.00062 29.6 1.8 47 436-485 19-68 (85)
221 3fl2_A E3 ubiquitin-protein li 32.2 7.8 0.00027 35.0 -0.6 44 437-485 53-96 (124)
222 1zbd_B Rabphilin-3A; G protein 31.6 19 0.00066 33.6 2.0 49 342-390 54-107 (134)
223 2ecy_A TNF receptor-associated 31.5 10 0.00035 30.1 0.1 45 436-485 15-59 (66)
224 3i2d_A E3 SUMO-protein ligase 31.5 35 0.0012 37.2 4.2 48 342-393 248-300 (371)
225 4fo9_A E3 SUMO-protein ligase 30.4 37 0.0013 36.9 4.2 47 343-393 215-266 (360)
226 2ysj_A Tripartite motif-contai 30.2 8.3 0.00028 30.3 -0.7 44 436-482 20-63 (63)
227 3fyb_A Protein of unknown func 30.1 17 0.00059 32.3 1.3 13 368-380 41-53 (104)
228 3kqi_A GRC5, PHD finger protei 29.9 13 0.00044 31.1 0.4 46 344-390 11-61 (75)
229 2a20_A Regulating synaptic mem 29.9 6.3 0.00021 31.9 -1.4 47 342-389 8-59 (62)
230 2o35_A Hypothetical protein DU 29.9 18 0.0006 32.3 1.3 13 368-380 42-54 (105)
231 2zet_C Melanophilin; complex, 29.5 25 0.00087 33.6 2.5 48 342-390 67-117 (153)
232 2ckl_B Ubiquitin ligase protei 29.5 9.4 0.00032 36.2 -0.6 46 436-485 54-99 (165)
233 1t1h_A Gspef-atpub14, armadill 29.0 13 0.00046 30.3 0.4 45 436-485 8-52 (78)
234 3dpl_R Ring-box protein 1; ubi 28.1 17 0.00058 32.5 0.9 28 455-485 71-98 (106)
235 2ct2_A Tripartite motif protei 27.5 9.8 0.00033 31.7 -0.8 50 436-485 15-65 (88)
236 4b2u_A S67; toxin, ICK; NMR {S 27.5 10 0.00035 26.6 -0.5 11 474-484 16-26 (36)
237 3ask_A E3 ubiquitin-protein li 27.2 18 0.00062 36.8 1.0 45 344-389 175-224 (226)
238 3ztg_A E3 ubiquitin-protein li 26.7 8.1 0.00028 32.8 -1.5 47 436-485 13-59 (92)
239 4a0k_B E3 ubiquitin-protein li 26.7 13 0.00045 33.9 -0.1 28 455-485 82-109 (117)
240 3shb_A E3 ubiquitin-protein li 25.4 18 0.00061 30.7 0.5 44 345-389 28-76 (77)
241 2jrp_A Putative cytoplasmic pr 24.9 8.6 0.0003 33.1 -1.6 39 344-391 3-41 (81)
242 1jm7_B BARD1, BRCA1-associated 24.6 45 0.0015 29.6 3.1 43 436-485 22-64 (117)
243 2y43_A E3 ubiquitin-protein li 23.4 16 0.00055 31.4 -0.2 44 437-485 23-66 (99)
244 3lrq_A E3 ubiquitin-protein li 23.3 12 0.00041 32.6 -1.0 46 436-485 22-67 (100)
245 2fiy_A Protein FDHE homolog; F 23.1 14 0.00048 39.3 -0.7 43 343-389 182-230 (309)
246 2jne_A Hypothetical protein YF 21.9 32 0.0011 30.6 1.4 43 343-394 32-74 (101)
247 1z6u_A NP95-like ring finger p 21.0 17 0.00059 34.2 -0.5 44 437-485 79-122 (150)
248 3mjh_B Early endosome antigen 20.2 19 0.00066 25.9 -0.3 13 342-354 4-16 (34)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.23 E-value=3e-12 Score=117.70 Aligned_cols=100 Identities=32% Similarity=0.701 Sum_probs=75.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccccccccccCCCCcCcccccceeecccCCC
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERD 417 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~erd 417 (777)
....|.||...-... .......|+..||..||...+. ..+.||.|
T Consensus 6 ~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C------------------------------ 54 (111)
T 2ysm_A 6 SGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC------------------------------ 54 (111)
T ss_dssp CCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT------------------------------
T ss_pred CCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcC------------------------------
Confidence 457899998864311 1123366899999999874321 11223333
Q ss_pred cccCCCchhhccccCCcCCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCCCCCCCC
Q 004044 418 QVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPVALGSSS 491 (777)
Q Consensus 418 q~~~~~eEel~s~ld~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~~~g~~~ 491 (777)
..|.+|+..+....||+|+.|+++||++||+|| ..+|.+.|+|+.|.....|.++
T Consensus 55 -------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~s~ 110 (111)
T 2ysm_A 55 -------------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPSS 110 (111)
T ss_dssp -------------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSCCC
T ss_pred -------------------CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCCCC
Confidence 478999998888889999999999999999998 8899999999999987666543
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.16 E-value=1.4e-11 Score=113.98 Aligned_cols=47 Identities=36% Similarity=0.866 Sum_probs=43.1
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
.|.+|+...+...||+|+.|+++||++||+|| ..+|.+.|+|+.|..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 68899988777889999999999999999998 899999999999964
No 3
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=6.8e-12 Score=116.85 Aligned_cols=110 Identities=21% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCccccccccccccc---ccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccCCCCcCcccccceeecccCCCc
Q 004044 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQ 418 (777)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~~~~~~e~liqv~erdq 418 (777)
....|+||++.|... ...+++++|||+||..||..|+....+||+||+.+....... +.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~------------l~i~---- 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP------------IYIG---- 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE------------CBCS----
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc------------cccC----
Confidence 457899999998632 122377889999999999999998889999998874322100 0000
Q ss_pred ccCCCchhhccccCCcCCcccccCcCCCCC----cccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 419 VYQPSEEDLRSFLDPYENVICSECHQGGDD----GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 419 ~~~~~eEel~s~ld~~e~~~C~vC~~~~~~----~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
.....|.+|...-.. ........|+..||..|+... + .....||.|+..
T Consensus 70 ---------------~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~--~-~~~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 ---------------SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS--L-KNANTCPTCRKK 122 (133)
T ss_dssp ---------------SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHH--H-HHCSBCTTTCCB
T ss_pred ---------------CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHH--H-HcCCCCCCCCCc
Confidence 123578999765321 122345578999999999864 0 113589999974
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.13 E-value=8.3e-11 Score=108.45 Aligned_cols=93 Identities=29% Similarity=0.654 Sum_probs=69.6
Q ss_pred Cccccccccccc-----ccccceeecCCCCcccHhhHHHH-------HhcCCCCCcccccccccccCCCCcCccccccee
Q 004044 343 KQVCGICLSEED-----KRRLRGTLNCCSHYFCFTCIMEW-------SKVESRCPLCKQRFKTITKPERSTAGVDLRSVV 410 (777)
Q Consensus 343 ~~~C~ICle~~~-----~~~~~~~l~~C~H~FC~~CI~~w-------~~~~~~CP~CR~~~~~i~~~~~~~~~~~~~e~l 410 (777)
...|.||+..-. ..........|+..||..||..+ ....+.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------------------- 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK---------------------- 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC----------------------
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC----------------------
Confidence 357999997521 11112233558999999999531 12346677772
Q ss_pred ecccCCCcccCCCchhhccccCCcCCcccccCcCC-CCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 411 IQVPERDQVYQPSEEDLRSFLDPYENVICSECHQG-GDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 411 iqv~erdq~~~~~eEel~s~ld~~e~~~C~vC~~~-~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
.|.+|+.. .+...|++|+.|+++||++||.|| ..+|.+.|+|+.|+.
T Consensus 63 ---------------------------~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 ---------------------------TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp ---------------------------CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ---------------------------ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68899875 345679999999999999999998 899999999999985
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.07 E-value=6.7e-11 Score=94.20 Aligned_cols=51 Identities=29% Similarity=0.639 Sum_probs=42.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
....|+||++.+.......+++.|+|+||..||..|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 346899999998755444455569999999999999999899999998763
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.05 E-value=1e-10 Score=93.02 Aligned_cols=51 Identities=31% Similarity=0.578 Sum_probs=43.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
....|+||++.+......+++++|+|+||..||..|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 347899999998654445777889999999999999998899999998764
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.01 E-value=1.1e-10 Score=111.09 Aligned_cols=49 Identities=35% Similarity=0.733 Sum_probs=43.4
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.+.|+||++.|. .+++++|||+||..||..|+....+||+||+++....
T Consensus 53 ~~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccC----CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 368999999987 5788889999999999999999899999999986654
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=97.01 Aligned_cols=53 Identities=26% Similarity=0.721 Sum_probs=43.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
....|+||++.|...... ++++|+|+||..||..|+....+||+||+.+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 347899999998654333 33469999999999999998889999999886654
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=97.04 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=40.0
Q ss_pred CcccccccccccccccceeecC-CCCcccHhhHHHHHhcC--CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~-C~H~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (777)
...|+||++.|. .+++++ |+|+||..||..|+... ..||+||+.+..
T Consensus 15 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT----TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 478999999987 567777 99999999999999865 689999987543
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=95.22 Aligned_cols=53 Identities=25% Similarity=0.627 Sum_probs=43.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
....|+||++.|.... ..+.++|+|+||..||..|+....+||+||..+....
T Consensus 13 ~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4578999999885432 3456679999999999999998889999998876543
No 11
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.98 E-value=1.8e-10 Score=91.44 Aligned_cols=47 Identities=36% Similarity=1.061 Sum_probs=43.8
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
.|.+|+.++..+.|++|+.|+++||++|++|+ ..+|.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58999998877889999999999999999988 889999999999975
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=95.49 Aligned_cols=51 Identities=24% Similarity=0.590 Sum_probs=42.0
Q ss_pred CCccccccccccccc---ccceeecCCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
....|+||++.+... ....++++|+|+||..||..|+....+||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 457899999998632 122377889999999999999998889999998875
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.96 E-value=3.6e-10 Score=93.86 Aligned_cols=53 Identities=30% Similarity=0.830 Sum_probs=43.8
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccccC
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKP 397 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~ 397 (777)
....|+||++.+... .++++|+|.||..||..|+....+||+||..+..+...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 346899999998631 36778999999999999999889999999988765433
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=96.38 Aligned_cols=48 Identities=31% Similarity=0.686 Sum_probs=42.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|+|+||..||..|+....+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4578999999986 46777899999999999999988899999988754
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.95 E-value=2.1e-10 Score=95.83 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=42.7
Q ss_pred CCccccccccccccc---ccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.+... ....++++|||+||..||..|+....+||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 457899999998632 1223778899999999999999988999999988754
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.5e-10 Score=94.71 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=40.9
Q ss_pred Ccccccccccccccccceee-cCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
...|+||++.+. .++. ++|+|+||..||..|+.....||+||..+...
T Consensus 15 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLI----DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCS----SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHH----CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 478999999987 3555 48999999999999998888999999887553
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=4.5e-10 Score=95.91 Aligned_cols=52 Identities=21% Similarity=0.568 Sum_probs=42.5
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
....|+||++.|..... .++++|+|+||..||..|+....+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45789999999864432 34456999999999999999888999999987654
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.8e-10 Score=97.21 Aligned_cols=47 Identities=30% Similarity=0.661 Sum_probs=42.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
....|+||++.+. .+++++|+|+||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc----CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3578999999986 4778889999999999999998889999999885
No 19
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.94 E-value=7.9e-10 Score=91.12 Aligned_cols=48 Identities=35% Similarity=0.897 Sum_probs=43.2
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
...+|.+|+.++. |++|+.|+++||++||+|| ..+|.+.|+|+.|+..
T Consensus 8 ~~~~C~vC~~~g~---ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSS---CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCC---EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4578999998664 9999999999999999998 8899999999999874
No 20
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=96.73 Aligned_cols=51 Identities=25% Similarity=0.729 Sum_probs=41.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+|||+.|..... .+.++|+|+||..||..|+....+||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQL-LRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCE-EEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCe-EEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45789999999875432 2445699999999999999988999999988754
No 21
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.92 E-value=9.9e-10 Score=96.74 Aligned_cols=48 Identities=29% Similarity=0.776 Sum_probs=43.9
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
....|.+|+.++. +|+|+.|+++||++||.|| ..+|.++|+|+.|...
T Consensus 24 n~~~C~vC~~~g~---LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSSC---CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCCC---EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4578999998875 9999999999999999999 8999999999999974
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.91 E-value=3.5e-10 Score=92.30 Aligned_cols=51 Identities=24% Similarity=0.575 Sum_probs=41.8
Q ss_pred Cccccccccccccc---ccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~---~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
...|+||++.+... ....++++|||+||..||..|+....+||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 46899999998632 1233677899999999999999988899999988754
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.91 E-value=4.8e-10 Score=100.85 Aligned_cols=48 Identities=29% Similarity=0.786 Sum_probs=42.0
Q ss_pred CCcccccccccccccccceee-cCCCCcccHhhHHHHHhcC-CCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (777)
....|+||++.|. .+++ ++|||+||..||..|+... .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCcccc----CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3478999999997 5777 8899999999999999887 689999998854
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=6.7e-10 Score=96.56 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=43.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (777)
....|+||++.|......+++++|||+||..||..|+... .+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4478999999997544347888899999999999999875 679999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.91 E-value=5e-10 Score=95.58 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=41.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (777)
..+.|+||++.+. .+++++|||+||..||..|+.. ..+||+||..+..
T Consensus 7 ~~~~C~IC~~~~~----~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK----DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS----SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc----CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4578999999987 5788889999999999999986 6789999988754
No 26
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=99.52 Aligned_cols=51 Identities=33% Similarity=0.718 Sum_probs=41.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+|||+.|..... .+.++|+|.||..||..|+....+||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999999865432 4445699999999999999988999999988743
No 27
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.90 E-value=6.4e-10 Score=101.78 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=40.6
Q ss_pred Ccccccccccccccc--------------cceeecCCCCcccHhhHHHHHh-----cCCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRR--------------LRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~--------------~~~~l~~C~H~FC~~CI~~w~~-----~~~~CP~CR~~~~~i 394 (777)
...|+|||+.|.... ...++++|+|+||..||..|+. ...+||+||..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999985321 1233778999999999999994 456799999988654
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7.5e-10 Score=93.08 Aligned_cols=48 Identities=31% Similarity=0.754 Sum_probs=40.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh---cCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~---~~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|||+||..||..|+. ....||+||..+..
T Consensus 19 ~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4578999999987 467778999999999999996 34579999988753
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.1e-10 Score=91.80 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=40.1
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|||+||..||..|+. ....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC----SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES----SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc----CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3578999999987 456678999999999999995 55689999988643
No 30
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=4.2e-10 Score=100.26 Aligned_cols=51 Identities=33% Similarity=0.873 Sum_probs=46.8
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
+...|.+|+.++....||+|+.|+++||++||+|| ..+|.+.|+|+.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45789999999888889999999999999999998 8899999999999864
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=9.8e-10 Score=90.67 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=40.2
Q ss_pred CCcccccccc-cccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccc
Q 004044 342 AKQVCGICLS-EEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle-~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (777)
+...|+||++ .+.......++++|||+||..||..|+. ....||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 7764433335678999999999999965 44679999988753
No 32
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.87 E-value=6.1e-10 Score=93.21 Aligned_cols=48 Identities=31% Similarity=0.889 Sum_probs=43.3
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
....|.+|+.++. ||+|+.|+++||++||+|| ..+|.+.|+|+.|...
T Consensus 7 ~~~~C~vC~~~g~---ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSS---CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCC---EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4578999998765 9999999999999999998 8899999999999864
No 33
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.6e-10 Score=96.72 Aligned_cols=52 Identities=29% Similarity=0.641 Sum_probs=41.0
Q ss_pred CCcccccccccccc-----------cccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDK-----------RRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~-----------~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.|.. .....++++|+|.||..||..|+....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 44678888887753 22234666799999999999999999999999988754
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.2e-10 Score=93.52 Aligned_cols=48 Identities=29% Similarity=0.845 Sum_probs=41.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
....|+||++.+.. ++++|+|.||..||..|+....+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 35789999999862 6677999999999999999888999999887653
No 35
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=91.60 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=42.8
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
....|.+|+.++. ||+|+.|+++||++||+|+ ..+|.++|||+.|...
T Consensus 11 ~~~~C~vC~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTD---VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTT---CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCe---EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3467999987765 9999999999999999998 8999999999999763
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=101.76 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=41.0
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCC-CCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~-~CP~CR~~~~~ 393 (777)
...|+||++.|. .+++++|||+||..||..|+.... .||+||..+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 478999999987 578889999999999999997544 79999999865
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=96.34 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCcccccccccccccccceeecC-CCCcccHhhHHHHHhcC--CCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE--SRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-C~H~FC~~CI~~w~~~~--~~CP~CR~~~~ 392 (777)
..+.|+||++.|. .+++++ |||+||..||..|+... ..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS----SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc----CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4578999999987 577878 99999999999998643 57999999874
No 38
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=1.5e-09 Score=93.27 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=40.8
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc------CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~------~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|+|+||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS----SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC----cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3478999999987 4677789999999999999887 5679999988754
No 39
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.82 E-value=1.8e-09 Score=98.69 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=41.8
Q ss_pred CCccccccccccccccc--------------ceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRL--------------RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~--------------~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.|..... ..++++|+|.||..||..|+....+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 45789999998864311 23557799999999999999999999999998643
No 40
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=93.03 Aligned_cols=48 Identities=35% Similarity=0.919 Sum_probs=44.1
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCC-CccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g-~W~C~~C~~ 484 (777)
..|.+|+.....+.||+|+.|+.+||++||+|| ..+|.+ .|+|+.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 389999988777889999999999999999998 889999 999999974
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=7e-10 Score=94.61 Aligned_cols=48 Identities=29% Similarity=0.605 Sum_probs=40.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc-------CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-------ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-------~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|||+||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECS----SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccC----CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4578999999987 4667789999999999999876 5679999998754
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=96.75 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=41.1
Q ss_pred Ccccccccccccccccceeec-CCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
...|+||++.+. .++.. +|||+||..||..|+....+||+||..+..
T Consensus 22 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN----IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC----CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 378999999987 46555 899999999999999988899999998865
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.81 E-value=1.8e-09 Score=98.13 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=42.3
Q ss_pred CCcccccccccccccccceeec-CCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
....|+||++.+. .++.+ +|||+||..||..|+....+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI----DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh----CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4478999999987 46665 8999999999999999888999999988653
No 44
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.81 E-value=1.9e-09 Score=91.32 Aligned_cols=47 Identities=38% Similarity=0.920 Sum_probs=43.6
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-CCCCCC-CccccCCCC
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g-~W~C~~C~~ 484 (777)
.|.+|+...+.+.||+|+.|+++||++||+|| ..+|.| .|+|+.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 78899988778889999999999999999998 889999 999999985
No 45
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.2e-09 Score=91.28 Aligned_cols=48 Identities=31% Similarity=0.717 Sum_probs=41.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhc------CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~------~~~CP~CR~~~~~ 393 (777)
....|+||++.+. .+++++|+|+||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT----QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS----SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC----CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3478999999986 4567789999999999999876 6789999988764
No 46
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=89.72 Aligned_cols=47 Identities=36% Similarity=0.984 Sum_probs=42.4
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
...+|.+|+.++. |++|+.|+++||++||+|| ..+|.+.|+|+.|..
T Consensus 10 ~~~~C~vC~~~g~---ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGGE---IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCSS---EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCCc---EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4578999998754 9999999999999999998 789999999999975
No 47
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.80 E-value=9.1e-10 Score=93.51 Aligned_cols=49 Identities=37% Similarity=1.059 Sum_probs=43.9
Q ss_pred CCcccccCcCCC--CCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
....|.+|+.++ ..+.||+|+.|+.+||++|++|+ .+|.|+|||+.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-cCCCCCcCCccCcC
Confidence 457899999875 56789999999999999999998 79999999999975
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.79 E-value=2.4e-09 Score=93.73 Aligned_cols=48 Identities=6% Similarity=-0.127 Sum_probs=43.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+.|+||++.+. .|++++|||+||+.||..|+....+||+|+.++..
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhc----CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4589999999997 68999999999999999999888899999988764
No 49
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.7e-09 Score=87.35 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=36.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh---cCCCCCcc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLC 387 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~---~~~~CP~C 387 (777)
....|+||++.+. .+++++|||+||..||..|+. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4578999999987 467778999999999999997 34579998
No 50
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.79 E-value=1.5e-09 Score=89.04 Aligned_cols=47 Identities=32% Similarity=0.939 Sum_probs=42.4
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
....|.+|+.++. |++|+.|+++||++|++|| ..+|.+.|+|+.|..
T Consensus 4 ~~~~C~vC~~~g~---ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCSS---CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCCc---EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4578999998764 9999999999999999998 889999999999975
No 51
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.6e-09 Score=87.71 Aligned_cols=47 Identities=32% Similarity=0.939 Sum_probs=42.0
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
...+|.+|+.++. |++|+.|.++||++||+|| ..+|.+.|+|+.|..
T Consensus 8 ~~~~C~vC~~~g~---ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSC---CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCe---EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3478999998764 9999999999999999998 889999999999964
No 52
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.76 E-value=3.3e-09 Score=91.41 Aligned_cols=47 Identities=38% Similarity=0.929 Sum_probs=43.6
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-CCCCCCC-ccccCCCC
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGN-WYCDGCRP 484 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~-W~C~~C~~ 484 (777)
.|.+|+...+...||+|+.|+++||++||+|| ..+|.++ |+|+.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 78999999888899999999999999999999 8999999 99999974
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.75 E-value=3.6e-09 Score=102.28 Aligned_cols=48 Identities=21% Similarity=0.480 Sum_probs=41.7
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCC-CCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~-~CP~CR~~~~~i 394 (777)
.+.|+||++.|. .+++++|||+||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc----CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 378999999987 578889999999999999998654 799999988654
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.75 E-value=3.4e-09 Score=95.69 Aligned_cols=48 Identities=6% Similarity=-0.114 Sum_probs=43.1
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+.||||++.+. .|++++|||+||+.||..|+....+||+|+.++..
T Consensus 28 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT----DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS----SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc----CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4589999999997 68998899999999999999887889999988764
No 55
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.74 E-value=2e-09 Score=95.20 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=43.4
Q ss_pred CcccccCcCCCC--CcccccccccccccccccccCC-C----CCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLG-R----VVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~--~~~lllCd~Cd~s~H~~CL~pp-~----~vP~g~W~C~~C~~~ 485 (777)
..+|.+|+.+.. .+.||+|+.|+++||++||+|| . .+|.+.|+|+.|+..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 478999998854 3679999999999999999998 4 389999999999863
No 56
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=3.7e-09 Score=96.10 Aligned_cols=47 Identities=32% Similarity=0.727 Sum_probs=40.2
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcC---CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (777)
...|+||++.+. .+++++|||+||..||..|+... .+||+||..+..
T Consensus 21 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK----EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS----SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc----CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 468999999986 46777899999999999999865 379999998765
No 57
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.6e-09 Score=84.17 Aligned_cols=42 Identities=31% Similarity=0.878 Sum_probs=35.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh---cCCCCCcc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLC 387 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~---~~~~CP~C 387 (777)
....|+||++.+. .+++++|+|+||..||..|+. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK----EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS----SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC----ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999987 457778999999999999954 45679998
No 58
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-09 Score=96.02 Aligned_cols=49 Identities=37% Similarity=1.059 Sum_probs=44.0
Q ss_pred CCcccccCcCCC--CCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
+...|.+|+.++ ..+.||+|+.|+.+||++|++|+ .+|.+.|||+.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~-~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS-SCCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC-ccCCCceECccccC
Confidence 457899999886 56689999999999999999998 69999999999976
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=5.5e-09 Score=94.00 Aligned_cols=48 Identities=8% Similarity=-0.100 Sum_probs=43.2
Q ss_pred CCcccccccccccccccceeecCCC-CcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCS-HYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~-H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+.||||++.+. .|++++|| |+||+.||..|+....+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc----CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3589999999998 78999999 999999999999888889999998764
No 60
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.72 E-value=2.3e-09 Score=89.46 Aligned_cols=51 Identities=22% Similarity=0.629 Sum_probs=43.2
Q ss_pred CCcccccCcCCC--CCcccccccccccccccccccCC-CC--C-CCCCccccCCCCC
Q 004044 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLG-RV--V-PEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~--~~~~lllCd~Cd~s~H~~CL~pp-~~--v-P~g~W~C~~C~~~ 485 (777)
+..+|.+|+.+. ..+.||+|+.|+.+||++|++|| .. + |.+.|+|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 457899999873 34679999999999999999998 33 4 8999999999763
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.71 E-value=2.2e-09 Score=98.55 Aligned_cols=47 Identities=26% Similarity=0.635 Sum_probs=40.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (777)
.+.|+||++.+. .++.++|||+||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 378999999987 4677789999999999999876 5679999999875
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.71 E-value=5.2e-09 Score=102.15 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=39.9
Q ss_pred Ccccccccccccccccceeec-CCCCcccHhhHHHHHhc-CCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (777)
...|+||++.|. .++.+ +|||+||..||..|+.. ...||+||..+..
T Consensus 54 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK----NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh----CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 368999999987 35554 89999999999999986 6779999998854
No 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.4e-08 Score=87.69 Aligned_cols=52 Identities=15% Similarity=0.428 Sum_probs=38.6
Q ss_pred CCcccccccccccccccceeec--CCCCcccHhhHHHHHh-cCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK-VESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~i~ 395 (777)
...+|+||++.+... .+.+. +|||.||..||..|.. ....||+||+.+....
T Consensus 10 ~~~~CpICle~~~~~--d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEID--DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTT--TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCccc--cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 457899999987532 12333 4999999999998754 3567999999886543
No 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=6.4e-09 Score=96.12 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=40.7
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCC-CCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~-~CP~CR~~~~~ 393 (777)
...|+||++.+. .+++++|||+||..||..|+.... +||+||..+..
T Consensus 18 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhc----CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 478999999987 567788999999999999998765 89999988754
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.66 E-value=2.9e-09 Score=98.92 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=0.9
Q ss_pred CCccccccccccccccc--------------ceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRL--------------RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~--------------~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.|..... ..++++|+|.||..||..|+....+||+||+.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 45789999999864211 12335799999999999999999999999988643
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.65 E-value=1e-08 Score=94.23 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=41.6
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc-CCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~-~~~CP~CR~~~~~i 394 (777)
...|+||++.+. .++.++|||+||..||..|+.. ..+||+||..+...
T Consensus 23 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILA----DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhc----CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 378999999987 5777889999999999999987 66899999987653
No 67
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=5.2e-09 Score=84.27 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=38.3
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
...+.|+||++.|. .+++++|+|+||..||..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK----CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB----CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC----CeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 35578999999987 4677889999999999874 4579999988754
No 68
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=9.3e-09 Score=94.86 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=39.5
Q ss_pred CCcccccccccccccccceeec-CCCCcccHhhHHHHHhcCCCCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (777)
..+.|+||++.|. .++++ +|||+||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR----EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh----CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4589999999987 56776 8999999999999987 67999999874
No 69
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=87.39 Aligned_cols=51 Identities=29% Similarity=0.738 Sum_probs=40.4
Q ss_pred CCcccccccccccccccceeecCCC-----CcccHhhHHHHHhcC--CCCCccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~-----H~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (777)
....|.|||+.+.... +++.+|. |+||..||.+|+... .+||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3468999999886442 4556785 999999999999865 4799999887553
No 70
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.62 E-value=1.5e-08 Score=100.89 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=43.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
...|.+|+.++. +++|++|+++||++|+.|+ ..+|.|.|+|+.|+..
T Consensus 4 ~~~C~~C~~~g~---ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCCSS---CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCCCe---eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 468999998876 9999999999999999998 8899999999999973
No 71
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.62 E-value=1.3e-08 Score=103.26 Aligned_cols=48 Identities=33% Similarity=0.844 Sum_probs=43.5
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
....|.+|+.++. +++|++|+++||++||.|| ..+|.|.|+|+.|+..
T Consensus 6 ~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEE---EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCc---eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3478999998876 9999999999999999998 8899999999999973
No 72
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=104.19 Aligned_cols=48 Identities=38% Similarity=0.901 Sum_probs=40.3
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCC-CccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g-~W~C~~C~~ 484 (777)
..|.+|+...+.+.||+|+.|+++||++||+|| ..+|.| +|+|+.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 479999998777889999999999999999999 889999 999999975
No 73
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=1.2e-08 Score=86.89 Aligned_cols=45 Identities=22% Similarity=0.608 Sum_probs=38.8
Q ss_pred CcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
...|+||++.+. .+++++|||. ||..|+..| ..||+||..+..+.
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 468999999886 5788889999 999999999 67999999886653
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.58 E-value=1.5e-08 Score=96.89 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=40.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCC-CCCccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFK 392 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~-~CP~CR~~~~ 392 (777)
..+.|+||++.+. .++.++|||+||..||..|+.... +||+||..+.
T Consensus 30 ~~~~C~IC~~~~~----~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLR----RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhc----CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4478999999987 578889999999999999998654 7999998753
No 75
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2.3e-08 Score=104.21 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=41.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcC-CCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (777)
..+.|+||++.+. .|++++|||+||+.||..|+... .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS----SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhc----CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4578999999997 68999999999999999999764 459999998854
No 76
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=99.54 Aligned_cols=46 Identities=30% Similarity=0.810 Sum_probs=42.5
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
..|.+|+.++. +++|++|+++||++|+.|+ ..+|.|.|+|+.|...
T Consensus 3 ~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS---CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCc---eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 57999998876 9999999999999999998 8899999999999874
No 77
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.53 E-value=2.7e-08 Score=82.40 Aligned_cols=50 Identities=32% Similarity=0.706 Sum_probs=41.1
Q ss_pred CCcccccccccccccccceeec--CCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN--CCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
....|+||++.+. .+++. +|||. ||..|+..|......||+||+++..+.
T Consensus 7 ~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 7 AIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp GGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 3468999999875 34554 89999 899999999988888999999886543
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.53 E-value=2.5e-08 Score=85.23 Aligned_cols=50 Identities=34% Similarity=0.724 Sum_probs=43.7
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
+..+|.+|+...+...|++|+.|+.+||++|++++ ..+|.+.|+|+.|..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 34689999998776689999999999999999998 566778999999975
No 79
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.51 E-value=3e-08 Score=92.06 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=42.4
Q ss_pred CCccccccccccccc---ccceeecCCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
....|+||++.+... ....++++|||+||..||..|+....+||+||..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 457899999988632 1223777899999999999999999999999988754
No 80
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.5e-08 Score=87.14 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCcccccccccccccccceeecC-CCCcccHhhHHHHHhcC------CCCCc--cccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE------SRCPL--CKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-C~H~FC~~CI~~w~~~~------~~CP~--CR~~ 390 (777)
..+.||||++.|. .|++++ |||+||+.||..|+... .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~----dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK----KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS----SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc----CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4588999999997 688885 99999999999998753 47999 8765
No 81
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.47 E-value=4.7e-08 Score=80.70 Aligned_cols=49 Identities=24% Similarity=0.691 Sum_probs=40.0
Q ss_pred Ccccccccccccccccceeec--CCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLN--CCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~--~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
...|+|||+... .+++. +|||. ||..|+..|......||+||+++..+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 468999999865 34444 89998 999999999887788999999886543
No 82
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=6.3e-08 Score=106.59 Aligned_cols=48 Identities=27% Similarity=0.851 Sum_probs=41.8
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTIT 395 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~i~ 395 (777)
..|+||++.+. .+++++|||.||..||..|+. ...+||+||..+....
T Consensus 333 ~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBC----CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCC----CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 68999999986 578889999999999999998 5778999999876643
No 83
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.44 E-value=8.5e-08 Score=95.29 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=41.3
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcC-CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (777)
.+.||||++.+. .|++++|||+||+.||..|+... .+||+|+.++..
T Consensus 106 ~f~CPI~~elm~----DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccCC----CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 478999999997 68999999999999999999764 469999988764
No 84
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=93.11 Aligned_cols=48 Identities=27% Similarity=0.617 Sum_probs=41.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCC-CCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~-~CP~CR~~~~~ 393 (777)
..+.|+||++.+. .|+.++|||+||..||..|+.... +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhc----CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3478999999987 567788999999999999987644 89999988765
No 85
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=2.7e-07 Score=78.88 Aligned_cols=48 Identities=21% Similarity=0.595 Sum_probs=39.2
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcC--CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (777)
...|+||++.|..+ .....|+|.||..||.+|+... .+||+||..+..
T Consensus 15 i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 36799999998743 2344799999999999999876 789999977654
No 86
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-07 Score=79.54 Aligned_cols=44 Identities=23% Similarity=0.622 Sum_probs=36.7
Q ss_pred CcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
...|+||++.+. .+++++|||. ||..|+..+ ..||+||..+..+
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 368999999876 5688889999 999999643 6799999988654
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.31 E-value=3.2e-07 Score=82.60 Aligned_cols=47 Identities=34% Similarity=0.897 Sum_probs=40.4
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
+.| +|+.....+.|+.|+.|..+||+.|++|+ ..+| ..|+|+.|...
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 567 78887777789999999999999999998 6677 48999999863
No 88
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.28 E-value=3.4e-07 Score=83.59 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=44.3
Q ss_pred CCcccccCcCCCCCccccccc--ccccccccccccCCCCCCCCCccccCCCCCCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALGSS 490 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd--~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~~~g~~ 490 (777)
...+|.+|+.++. |++|+ .|.++||++||++. .+|.|.|+||.|....+|..
T Consensus 14 ~~~~C~~C~~~G~---ll~CD~~~Cp~~fH~~Cl~L~-~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 14 HEDYCFQCGDGGE---LVMCDKKDCPKAYHLLCLNLT-QPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SCSSCTTTCCCSE---EEECCSTTCCCEECTGGGTCS-SCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCcCCCCCc---EeEECCCCCCcccccccCcCC-cCCCCCEECCCCCCCcCCCC
Confidence 4578999997655 99999 89999999999975 89999999999987666544
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=79.41 Aligned_cols=87 Identities=17% Similarity=0.365 Sum_probs=59.5
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC-CCCCCCCCCCCCCccccccccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTASTNLYNRP 512 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~-~~g~~~~~~~~~~~~~~~~~~~~f~~p 512 (777)
+..+|.+|+.+++...|++|+.|.++||.+||+++ ..++.+.|+|+.|..+ .++...... ..-.....
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~----------~ll~Cd~C 75 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDS----------KMLVCDTC 75 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCT----------TEEECSSS
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCC----------CeeECCCC
Confidence 45789999999886678999999999999999998 5567899999999755 444331100 01123445
Q ss_pred CCCccCCccCCCCCCCCCCC
Q 004044 513 SPIVSFGEGFDPYSVSSPRI 532 (777)
Q Consensus 513 ~~~~~~~e~ldp~~~~s~R~ 532 (777)
....|+ .+|+|.+...|..
T Consensus 76 ~~~yH~-~Cl~ppl~~~P~g 94 (111)
T 2ysm_A 76 DKGYHT-FCLQPVMKSVPTN 94 (111)
T ss_dssp CCEEEG-GGSSSCCSSCCSS
T ss_pred CcHHhH-HhcCCccccCCCC
Confidence 555664 3666665544443
No 90
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=6.5e-07 Score=75.05 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=38.0
Q ss_pred CCcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
....|+|||+... .+++++|+|. ||..|+.. ...||+||..+..+.
T Consensus 14 ~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 14 NSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCcCcCCC----CEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 3468999999875 5788899999 99999984 367999999886654
No 91
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=3.1e-07 Score=79.22 Aligned_cols=44 Identities=30% Similarity=0.797 Sum_probs=37.7
Q ss_pred cccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
..|+||++.+. .+++.+|||. ||..|+..| ..||+||..+....
T Consensus 19 ~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 19 MLCMVCCEEEI----NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp TBCTTTSSSBC----CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CEeEEeCcccC----cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 68999999876 5788889999 999999987 37999999887654
No 92
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.20 E-value=1e-06 Score=74.70 Aligned_cols=48 Identities=42% Similarity=0.900 Sum_probs=40.3
Q ss_pred CCcccccCcCCCCCcccccccc--cc-cccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
+..+| +|+.... +.|+.|+. |. .+||+.|+++. .+|.+.|||+.|...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECCCCCcc
Confidence 45788 7998654 46999999 77 69999999987 788899999999864
No 93
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.1e-07 Score=94.93 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=40.6
Q ss_pred cCCcccccccccccccccceee-cCCCCcccHhhHHHHHhcC--CCCCc--ccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVE--SRCPL--CKQRFKT 393 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l-~~C~H~FC~~CI~~w~~~~--~~CP~--CR~~~~~ 393 (777)
...+.||||+..|. .||. ..|||+||+.||..|.... .+||+ |++.+..
T Consensus 179 ~~el~CPIcl~~f~----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS----SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 35689999999997 6786 4899999999999998753 46999 9987654
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.13 E-value=1.9e-06 Score=76.48 Aligned_cols=51 Identities=43% Similarity=0.918 Sum_probs=41.5
Q ss_pred CCcCCcccccCcCCCCCcccccccc--cc-cccccccccCCCCCCCCCccccCCCCC
Q 004044 432 DPYENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
++.+..+| +|+.... ..|+.|+. |. .+||+.|++++ .+|.+.|||+.|...
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECcCccCc
Confidence 33355788 9998654 46999999 66 79999999987 678899999999874
No 95
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.08 E-value=1.3e-06 Score=71.87 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=40.9
Q ss_pred Ccccccccccccccccceeec-CCCCcccHhhHHHHHhcCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
.+.|+||++.+. .|++. +|||+|++.||..|+....+||+++.++..
T Consensus 3 ~~~CpIs~~~m~----dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR----RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS----SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC----CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 368999999987 57887 899999999999999887889999988754
No 96
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.07 E-value=6.5e-07 Score=73.45 Aligned_cols=47 Identities=43% Similarity=0.933 Sum_probs=39.1
Q ss_pred CCcccccCcCCCCCcccccccc--cc-cccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
+..+| +|+.... +.|+.|+. |. .+||+.|++++ .+|.+.|+|+.|..
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECcCccC
Confidence 44678 8998654 56999999 55 79999999987 78889999999965
No 97
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.07 E-value=8.4e-07 Score=96.72 Aligned_cols=46 Identities=24% Similarity=0.709 Sum_probs=39.7
Q ss_pred CCcccccccccccccccceeecCCCCc-ccHhhHHHHHhcCCCCCcccccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
....|+||++.+. .+++++|||. ||..|+..| ..||+||.++....
T Consensus 294 ~~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 294 EERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 4578999999986 5788899999 999999988 67999999887654
No 98
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.02 E-value=8.2e-07 Score=72.60 Aligned_cols=47 Identities=40% Similarity=0.871 Sum_probs=39.1
Q ss_pred CCcccccCcCCCCCcccccccc--cc-cccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~--Cd-~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
+..+| +|+.... +.|+.|+. |. .+||+.|+++. .+|.+.|+||.|..
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECcCccC
Confidence 45678 8998654 46999999 76 69999999987 77889999999965
No 99
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.97 E-value=1.2e-06 Score=72.36 Aligned_cols=47 Identities=40% Similarity=0.798 Sum_probs=39.0
Q ss_pred CCcccccCcCCCCCcccccccccc---cccccccccCCCCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICD---SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd---~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
+..+| +|+.... +.|+.|+.|+ .+||+.|+++. .+|.+.|+||.|..
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECcCccc
Confidence 44678 8998654 4699999955 89999999987 67889999999975
No 100
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.96 E-value=2.6e-06 Score=75.42 Aligned_cols=47 Identities=38% Similarity=0.816 Sum_probs=39.0
Q ss_pred CCcccccCcCCCCCcccccccccc---cccccccccCCCCCCCCCccccC-CCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICD---SSAHTYCVGLGRVVPEGNWYCDG-CRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd---~s~H~~CL~pp~~vP~g~W~C~~-C~~ 484 (777)
+..+| +|+..... .|+.|+.|+ .+||+.|+++. .+|.+.|||+. |..
T Consensus 25 ~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCCCC-cCCCCCccCChhhcc
Confidence 44678 89986553 599999977 89999999987 67889999999 864
No 101
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.91 E-value=2.3e-06 Score=75.72 Aligned_cols=47 Identities=26% Similarity=0.700 Sum_probs=34.7
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc--------CCCCCc--cccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPL--CKQR 390 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~--------~~~CP~--CR~~ 390 (777)
..+|+||++.+.... ...+.+|+|.||..||..|+.. ..+||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 478999999886321 1233479999999999987653 135999 9877
No 102
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.91 E-value=2.4e-06 Score=91.90 Aligned_cols=52 Identities=25% Similarity=0.548 Sum_probs=39.0
Q ss_pred CCcccccccccccccccce--ee--cCCCCcccHhhHHHHHhcC-----------CCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRG--TL--NCCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~--~l--~~C~H~FC~~CI~~w~~~~-----------~~CP~CR~~~~~ 393 (777)
....|+||++.+......| ++ +.|+|.||..||.+|+... ..||.||++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 5578999999986522222 22 4799999999999999642 459999987754
No 103
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.87 E-value=6.9e-06 Score=67.27 Aligned_cols=48 Identities=23% Similarity=0.636 Sum_probs=36.2
Q ss_pred CCcccccccccccccccceeecCC--CC---cccHhhHHHHHhc--CCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCC--SH---YFCFTCIMEWSKV--ESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C--~H---~FC~~CI~~w~~~--~~~CP~CR~~~~~ 393 (777)
....|.||++.... +.+.|| .| +||..||.+|+.. ..+||+|+..|..
T Consensus 5 ~~~~CrIC~~~~~~----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGN----ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSC----CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCC----ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45789999987432 344565 45 8999999999875 4679999988753
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.75 E-value=8.7e-06 Score=77.81 Aligned_cols=47 Identities=28% Similarity=0.768 Sum_probs=41.4
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCC--------CCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV--------VPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~--------vP~g~W~C~~C~~~ 485 (777)
..+|.+|+.++. +++|+.|.++||..|+.||.. .|.++|+|+.|...
T Consensus 63 ~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 478999999988 999999999999999998721 48999999999863
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.74 E-value=2e-05 Score=72.45 Aligned_cols=90 Identities=21% Similarity=0.354 Sum_probs=58.9
Q ss_pred cccccCcCC------CCCcccccccccccccccccccCC----CCCCCCCccccCCCCC-CCCCCCCCCCCCCccccccc
Q 004044 437 VICSECHQG------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTAS 505 (777)
Q Consensus 437 ~~C~vC~~~------~~~~~lllCd~Cd~s~H~~CL~pp----~~vP~g~W~C~~C~~~-~~g~~~~~~~~~~~~~~~~~ 505 (777)
.+|.+|... +..+.|+.|+.|+++||.+||++. ..++.+.|+|+.|..+ .++...... + .
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~-~--------~ 76 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNA-D--------N 76 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTT-C--------C
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCc-c--------c
Confidence 578888765 345579999999999999999852 3567899999999765 444321100 0 0
Q ss_pred cccCCCCCCCccCCccCCCCCCCCCCCCCCC
Q 004044 506 TNLYNRPSPIVSFGEGFDPYSVSSPRIPLTP 536 (777)
Q Consensus 506 ~~~f~~p~~~~~~~e~ldp~~~~s~R~~~~~ 536 (777)
.-.........|+ .+|+|.+...|...|..
T Consensus 77 ll~Cd~C~~~yH~-~Cl~p~l~~~P~~~W~C 106 (112)
T 3v43_A 77 MLFCDSCDRGFHM-ECCDPPLTRMPKGMWIC 106 (112)
T ss_dssp CEECTTTCCEECG-GGCSSCCSSCCSSCCCC
T ss_pred eEEcCCCCCeeec-ccCCCCCCCCCCCCeEC
Confidence 1123445555663 47777776666665543
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.73 E-value=1.3e-05 Score=73.80 Aligned_cols=53 Identities=25% Similarity=0.618 Sum_probs=41.8
Q ss_pred cccccCcCCC-------CCcccccccccccccccccccCC----CCCCCCCccccCCCCC-CCCC
Q 004044 437 VICSECHQGG-------DDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGS 489 (777)
Q Consensus 437 ~~C~vC~~~~-------~~~~lllCd~Cd~s~H~~CL~pp----~~vP~g~W~C~~C~~~-~~g~ 489 (777)
.+|.+|..++ ..+.|++|+.|.++||.+||+++ ..+|.+.|+|+.|..+ .++.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~ 66 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGT 66 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccc
Confidence 4688887654 34579999999999999999986 2477889999999755 4444
No 107
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=1.6e-05 Score=71.08 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=39.1
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHh-cCCCCCcccccccccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTIT 395 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-~~~~CP~CR~~~~~i~ 395 (777)
-|++|--.+. .++.+.||.|+||.+|+..|.+ ...+||.|+.++..+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4888887765 3577888999999999999985 4578999998886654
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.63 E-value=1.8e-05 Score=66.54 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=42.1
Q ss_pred CCcCCcccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 432 DPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
...+..+| +|+.......|+.|+.|..+||..|++++ ..+| ..|+|+.|..
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 33455788 99998777789999999999999999987 4454 6899999975
No 109
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=1.5e-05 Score=67.28 Aligned_cols=46 Identities=41% Similarity=0.822 Sum_probs=37.7
Q ss_pred CcccccCcCCCCCcccccccccc---cccccccccCCCCCCCCCccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICD---SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd---~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..+| +|+.... +.|+.|+.|+ .+||+.|+++. .+|.+.|||+.|..
T Consensus 6 ~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 6 SGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCHHHHH
T ss_pred CeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccccC-cCCCCCEECCCCCc
Confidence 3567 4887654 3799999986 78999999987 57889999999975
No 110
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.38 E-value=4.3e-05 Score=63.05 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=40.7
Q ss_pred CCcccccCcCCCC-CcccccccccccccccccccCC-CCCC-CCCccccCCCCC
Q 004044 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp-~~vP-~g~W~C~~C~~~ 485 (777)
+..+|.+|+...+ ...|+.|+.|..+||..|++++ ..+. ...|+|+.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3468999998864 4679999999999999999987 2222 368999999864
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.31 E-value=6.7e-05 Score=64.54 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=40.3
Q ss_pred CCcccccCcCCCCCccccccc--ccccccccccccCC-CC-----CCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLG-RV-----VPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd--~Cd~s~H~~CL~pp-~~-----vP~g~W~C~~C~~~ 485 (777)
...+| +|+.......|+.|+ .|..+||..|++++ .. .....|+|+.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45788 799986667899999 99999999999987 21 12368999999763
No 112
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.30 E-value=6.8e-05 Score=63.45 Aligned_cols=48 Identities=33% Similarity=0.682 Sum_probs=38.6
Q ss_pred CcccccCcCCCCC-cccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 436 NVICSECHQGGDD-GLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~-~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
..+| +|+...+. ..|+.|+.|..+||..|+++. .......|+|+.|..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3678 69988654 479999999999999999987 222347899999975
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.18 E-value=0.00013 Score=62.82 Aligned_cols=49 Identities=31% Similarity=0.703 Sum_probs=39.1
Q ss_pred CcccccCcCCCC-CcccccccccccccccccccCC-C-CCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-R-VVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp-~-~vP~g~W~C~~C~~~ 485 (777)
..+| +|+...+ ...|+.|+.|..+||..|+++. . ......|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3567 8998764 5689999999999999999986 2 122468999999874
No 114
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.17 E-value=9.9e-05 Score=61.81 Aligned_cols=47 Identities=28% Similarity=0.574 Sum_probs=36.4
Q ss_pred cccccCcCCCCCcccccccc--cccccccccccCC-CC----CCCCCccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDI--CDSSAHTYCVGLG-RV----VPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~--Cd~s~H~~CL~pp-~~----vP~g~W~C~~C~~ 484 (777)
+.| +|+.....+.|+.|+. |..+||..|++++ .. .....|+|+.|+.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 567 7988877778999995 9999999999975 11 1124799999974
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.05 E-value=8.2e-05 Score=69.95 Aligned_cols=47 Identities=28% Similarity=0.848 Sum_probs=40.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC------CCC--CCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG------RVV--PEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp------~~v--P~g~W~C~~C~~~ 485 (777)
..+|.+|+.+++ +++|+.|.++||..|+.|+ ..+ |.+.|+|+.|...
T Consensus 57 ~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 367999999987 9999999999999999975 123 7899999999863
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.97 E-value=7.8e-05 Score=73.24 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=39.7
Q ss_pred CCcccccCcCCCC-CcccccccccccccccccccCC--CCCCCCCccccCCCC
Q 004044 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp--~~vP~g~W~C~~C~~ 484 (777)
+..+| +|+...+ ...|+.|+.|..+||..|++++ ...+.+.|+|+.|..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34789 9998754 5579999999999999999976 223367899999986
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.94 E-value=7e-05 Score=63.98 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=39.0
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC-CC---C--CCCCccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RV---V--PEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~---v--P~g~W~C~~C~~ 484 (777)
..+| +|+.......|+.|+.|..+||..|+++. .. + +...|+|+.|..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3677 89998776689999999999999999986 11 1 347899999975
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.92 E-value=0.00018 Score=57.11 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=36.4
Q ss_pred cccccCcCCCC-Cccccccc-ccccccccccccCC-CCCCCCCccccCCC
Q 004044 437 VICSECHQGGD-DGLMLLCD-ICDSSAHTYCVGLG-RVVPEGNWYCDGCR 483 (777)
Q Consensus 437 ~~C~vC~~~~~-~~~lllCd-~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~ 483 (777)
..|.+|+...+ ...|+.|+ .|...||..|+++. .......|+|+.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 45778888764 45799999 89999999999986 22223789999995
No 119
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.89 E-value=0.00022 Score=56.49 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=37.5
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~ 484 (777)
..| +|+...+...|+.|+.|...||..|++++ ..+| ..|+|+.|..
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 344 68887776689999999999999999987 3344 6899999964
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.87 E-value=0.00017 Score=65.50 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=39.2
Q ss_pred cccccCcCCC-CCccccccc-ccccccccccccCCC----C---CCCCCccccCCCCC
Q 004044 437 VICSECHQGG-DDGLMLLCD-ICDSSAHTYCVGLGR----V---VPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~-~~~~lllCd-~Cd~s~H~~CL~pp~----~---vP~g~W~C~~C~~~ 485 (777)
..|.+|+... ....|+.|+ .|..+||..|+++.. . .|...|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 5799999983 234688898 999999999999861 1 36688999999864
No 121
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.86 E-value=9.3e-05 Score=61.58 Aligned_cols=47 Identities=28% Similarity=0.695 Sum_probs=38.9
Q ss_pred cccccCcCCCC-Cccccccc-ccccccccccccCCC-------CCCCCCccccCCC
Q 004044 437 VICSECHQGGD-DGLMLLCD-ICDSSAHTYCVGLGR-------VVPEGNWYCDGCR 483 (777)
Q Consensus 437 ~~C~vC~~~~~-~~~lllCd-~Cd~s~H~~CL~pp~-------~vP~g~W~C~~C~ 483 (777)
..|.+|+...+ ...|+.|+ .|..+||..|+++.. ..|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 68999999743 45799999 999999999999861 1367799999985
No 122
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=68.64 Aligned_cols=48 Identities=21% Similarity=0.595 Sum_probs=38.0
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcC--CCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (777)
...|.||.+.+..+ ..++.|+|.||..|+..|+... ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46799999988743 3455699999999999998764 479999876544
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.24 E-value=0.002 Score=58.72 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=30.3
Q ss_pred ccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccc
Q 004044 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYC 479 (777)
Q Consensus 438 ~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C 479 (777)
.|.+|++... +.|..|..+||..|+... ...+...|+|
T Consensus 60 ~C~~C~k~~~----~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 60 QCDECSSAAV----SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp BCTTTCSBCC----EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCcCCCCCC----cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 4667776543 779999999999999987 5567788987
No 124
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.77 E-value=0.017 Score=50.41 Aligned_cols=67 Identities=22% Similarity=0.539 Sum_probs=48.0
Q ss_pred CCCcccCCCchhhccccCCcCCccccc----CcCCCCC------cccccccccc-cccccccccCCCCCCCCCccccCCC
Q 004044 415 ERDQVYQPSEEDLRSFLDPYENVICSE----CHQGGDD------GLMLLCDICD-SSAHTYCVGLGRVVPEGNWYCDGCR 483 (777)
Q Consensus 415 erdq~~~~~eEel~s~ld~~e~~~C~v----C~~~~~~------~~lllCd~Cd-~s~H~~CL~pp~~vP~g~W~C~~C~ 483 (777)
.+++.|+.....+..++..+ ..|.+ |..+... -.|++|..|+ .+.|..|..+. .....|.|..|.
T Consensus 2 ~rDAsWEle~nAy~eL~~R~--~~CdA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~--~~~~~weC~~C~ 77 (85)
T 1weq_A 2 SSGSSGELEPGAFSELYQRY--RHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLR--PNSKKWECNECL 77 (85)
T ss_dssp CCCCCCCCCTTCCCCCSSCC--CCCCCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCC--TTCSCCCCTTTS
T ss_pred CCCCccccCcCHHHHHhhCc--CccCccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCc--CCCCCEECCcCc
Confidence 46778887777777777665 34443 4444332 3699999999 66899999863 345789999999
Q ss_pred CC
Q 004044 484 PV 485 (777)
Q Consensus 484 ~~ 485 (777)
..
T Consensus 78 ~v 79 (85)
T 1weq_A 78 PA 79 (85)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 125
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.77 E-value=0.003 Score=62.79 Aligned_cols=49 Identities=31% Similarity=0.661 Sum_probs=38.1
Q ss_pred cccccCcCCCCCc----ccccccccccccccccccCCC-------CCCC-CCccccCCCCC
Q 004044 437 VICSECHQGGDDG----LMLLCDICDSSAHTYCVGLGR-------VVPE-GNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~----~lllCd~Cd~s~H~~CL~pp~-------~vP~-g~W~C~~C~~~ 485 (777)
..|.+|+....++ .|+.|+.|+.+||..|+++.. .+|. ..|+|+.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4699999875544 499999999999999999851 1232 37999999974
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.66 E-value=0.0016 Score=55.49 Aligned_cols=47 Identities=32% Similarity=0.711 Sum_probs=36.8
Q ss_pred cccccCcCCCC-CcccccccccccccccccccCC-CCCC-CCCccccCCCC
Q 004044 437 VICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRP 484 (777)
Q Consensus 437 ~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp-~~vP-~g~W~C~~C~~ 484 (777)
.+| +|+...+ ...|+.|+.|..+||..|+++. ..++ ...|+|+.|..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 455 7888654 5679999999999999999987 3233 25799999986
No 127
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.54 E-value=0.0041 Score=70.60 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=29.6
Q ss_pred cccccccccccccccccccCC-CC-CCCCCccccCCCC
Q 004044 449 GLMLLCDICDSSAHTYCVGLG-RV-VPEGNWYCDGCRP 484 (777)
Q Consensus 449 ~~lllCd~Cd~s~H~~CL~pp-~~-vP~g~W~C~~C~~ 484 (777)
..|+.|+.|+.+||..|+++. .. .....|+||.|..
T Consensus 56 ~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 56 FQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 368899999999999999987 22 2346899999986
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.29 E-value=0.0063 Score=52.63 Aligned_cols=50 Identities=20% Similarity=0.549 Sum_probs=38.2
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCC-------------CCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-------------RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-------------~~vP~g~W~C~~C~~~ 485 (777)
.+..|.+|..-.. ..++-|..|.+.||..||..+ ...+..-|.|+.|..-
T Consensus 14 ~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCcccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 4578999986543 348889999999999999863 1124567999999763
No 129
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.97 E-value=0.019 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.547 Sum_probs=24.5
Q ss_pred CCccccccccc-ccccccceeecCCCCcccHhhHHH
Q 004044 342 AKQVCGICLSE-EDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 342 ~~~~C~ICle~-~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
+...|+||++. +... ....+.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~a--v~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA--VKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBC--CEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCc--eEECCcCChHHhHHHCHH
Confidence 45789999975 3321 233377999999999997
No 130
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.83 E-value=0.0029 Score=71.85 Aligned_cols=49 Identities=33% Similarity=0.670 Sum_probs=38.1
Q ss_pred CCcccccCcCCCC-CcccccccccccccccccccCC-CCCC-CCCccccCCCC
Q 004044 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp-~~vP-~g~W~C~~C~~ 484 (777)
+..+| +|+...+ ...|+.|+.|..+||..|+++. .... ...|+|+.|..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 44566 8988754 5679999999999999999986 2222 25799999985
No 131
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.66 E-value=0.012 Score=51.91 Aligned_cols=50 Identities=34% Similarity=0.847 Sum_probs=39.7
Q ss_pred cCCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccccccc
Q 004044 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (777)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (777)
.+...|-.|+-... ..+.+..|++|..|+...+..+..||+|..++.+..
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 35578999997754 345544799999999999999999999998876643
No 132
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.96 E-value=0.037 Score=50.56 Aligned_cols=37 Identities=22% Similarity=0.639 Sum_probs=28.6
Q ss_pred CcccccccccccccccccccCC-CCCCC----CCccccCCCC
Q 004044 448 DGLMLLCDICDSSAHTYCVGLG-RVVPE----GNWYCDGCRP 484 (777)
Q Consensus 448 ~~~lllCd~Cd~s~H~~CL~pp-~~vP~----g~W~C~~C~~ 484 (777)
...|+.|+.|+.+||..|++++ ..++. ..|+|+.|..
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4458889999999999999986 33332 3499999986
No 133
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=92.55 E-value=0.0097 Score=66.81 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=35.7
Q ss_pred ccCcCCCC-CcccccccccccccccccccCC-CCC-CCCCccccCCCC
Q 004044 440 SECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVV-PEGNWYCDGCRP 484 (777)
Q Consensus 440 ~vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp-~~v-P~g~W~C~~C~~ 484 (777)
.+|+...+ ...|+.|+.|..+||..|++++ ... ....|+|+.|..
T Consensus 8 CiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred EeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 48888644 5679999999999999999986 222 236799999975
No 134
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=88.14 E-value=0.23 Score=45.52 Aligned_cols=35 Identities=29% Similarity=0.678 Sum_probs=28.5
Q ss_pred cccccccccccccccccCC-------CCCC-CCCccccCCCCC
Q 004044 451 MLLCDICDSSAHTYCVGLG-------RVVP-EGNWYCDGCRPV 485 (777)
Q Consensus 451 lllCd~Cd~s~H~~CL~pp-------~~vP-~g~W~C~~C~~~ 485 (777)
|+.|+.|..+||..|+++. ..+| ...|.||.|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 7899999999999999875 2345 346999999874
No 135
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.84 E-value=0.78 Score=40.10 Aligned_cols=53 Identities=28% Similarity=0.516 Sum_probs=36.4
Q ss_pred CCcccccccccccc---cccceeecCCCCcccHhhHHH-HHhcCCCCCccccccccc
Q 004044 342 AKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 342 ~~~~C~ICle~~~~---~~~~~~l~~C~H~FC~~CI~~-w~~~~~~CP~CR~~~~~i 394 (777)
...+|.||-+.+.- +.......-|+-..|+.|+.- .......||.|+.+|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 44789999997532 212222344788899999984 445567799999888643
No 136
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.52 E-value=0.22 Score=40.53 Aligned_cols=49 Identities=18% Similarity=0.475 Sum_probs=32.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh-----cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-----~~~~CP~CR~~ 390 (777)
+...|+||...+.......-...|..+||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45789999987643221122245899999999973221 34669999654
No 137
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.63 E-value=0.53 Score=38.98 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=31.2
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhc----CCCCCccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV----ESRCPLCKQR 390 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~----~~~CP~CR~~ 390 (777)
...|.||...-. ......|...||..|+...+.. .+.||.|...
T Consensus 12 ~~~C~vC~~~~~----ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTD----VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTT----CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCe----EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 357999986422 2334559999999999866543 4679999643
No 138
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.61 E-value=1.6 Score=37.79 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w 377 (777)
.+..|.||--. ......+.-. |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceecccc-ccccccHhhcccc
Confidence 45789999643 2221122222 8999999999975
No 139
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=76.95 E-value=0.52 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCcccccccccccccccceeec-CCCCcccHhhHHHHH------h----cCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWS------K----VESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~------~----~~~~CP~CR 388 (777)
....|+||...+.......... .|.-+||+.|+.--. . ....||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3468999999876443333445 799999999995111 1 145699885
No 140
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=76.87 E-value=1.1 Score=44.05 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=31.9
Q ss_pred cCcCCCC-CcccccccccccccccccccCC--CCCCCC---CccccCCCCC
Q 004044 441 ECHQGGD-DGLMLLCDICDSSAHTYCVGLG--RVVPEG---NWYCDGCRPV 485 (777)
Q Consensus 441 vC~~~~~-~~~lllCd~Cd~s~H~~CL~pp--~~vP~g---~W~C~~C~~~ 485 (777)
-|+..++ ...++.|..|.++||..|+..+ .-+|-. .+.|..|...
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4776554 4579999999999999999865 345522 3578888763
No 141
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.13 E-value=0.46 Score=42.88 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=31.7
Q ss_pred cccccccccccccccceeec-CCCCcccHhhHHHHH----h------cCCCCCcccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWS----K------VESRCPLCKQRF 391 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w~----~------~~~~CP~CR~~~ 391 (777)
..|+||...+.........- .|..|||..|+.--. . ....||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999875432222233 588999999985211 1 346799998654
No 142
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.10 E-value=1 Score=44.59 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=32.6
Q ss_pred Cccccccccccccccc-ceee--cCCCCcccHhhHHHH------Hh-----cCCCCCcccccc
Q 004044 343 KQVCGICLSEEDKRRL-RGTL--NCCSHYFCFTCIMEW------SK-----VESRCPLCKQRF 391 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~-~~~l--~~C~H~FC~~CI~~w------~~-----~~~~CP~CR~~~ 391 (777)
+..||||.-.+..... ..++ ..|..+||..|+.-- +. ....||.|+...
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3579999988765431 1233 448999999998521 11 156799997653
No 143
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.64 E-value=2.4 Score=36.40 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCcccccccccccccccceeecC-CCCcccHhhHHHHHh
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSK 379 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-C~H~FC~~CI~~w~~ 379 (777)
..+.|.+|.+.+.....+ -.+. =.|.||+.|-....+
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHH
Confidence 347899999998754321 1222 269999999987765
No 144
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.58 E-value=0.86 Score=44.08 Aligned_cols=47 Identities=28% Similarity=0.646 Sum_probs=37.8
Q ss_pred CcccccCcCCCCCccccccc--ccccccccccccCC-------CCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLG-------RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd--~Cd~s~H~~CL~pp-------~~vP~g~W~C~~C~~~ 485 (777)
..+|.+|+.++. +++|+ .|.+.|+..|+... ..+....|.|--|.+.
T Consensus 79 ~~yC~wC~~Gg~---l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGGRE---VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCCSE---EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCCCe---EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 368999999876 99999 79999999999742 1134567999999973
No 145
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.13 E-value=1.1 Score=37.51 Aligned_cols=48 Identities=17% Similarity=0.467 Sum_probs=31.8
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQRF 391 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~~ 391 (777)
...|+||....... .......|..+||..|+..-.. ..+.||.|...+
T Consensus 18 ~~~C~~C~~~~~~~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCSSC-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCCCC-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 35699998765321 1222345899999999974332 346799997654
No 146
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.65 E-value=2.7 Score=35.64 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=30.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH-----hcCCCCCcccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----KVESRCPLCKQRF 391 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~-----~~~~~CP~CR~~~ 391 (777)
....| ||...+.......-...|..+||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44567 8988764221112224589999999996221 1346699997653
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=69.81 E-value=1.4 Score=48.39 Aligned_cols=46 Identities=30% Similarity=0.620 Sum_probs=37.1
Q ss_pred cccccCcCCCCCccccccc--ccccccccccccCC------CC-CCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLG------RV-VPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd--~Cd~s~H~~CL~pp------~~-vP~g~W~C~~C~~~ 485 (777)
.+|..|+.++. +++|+ .|.+.||..|+... .. .....|.|--|...
T Consensus 94 ~yCr~C~~Gg~---l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 94 SYCSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSCTTTCCCSS---CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred ccceEcCCCCe---EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 68999999887 99999 99999999999743 11 11467999999974
No 148
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=69.10 E-value=2.4 Score=37.66 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=22.2
Q ss_pred ccccccccccccccCC--CCCCCCCccccCCCCC
Q 004044 454 CDICDSSAHTYCVGLG--RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 454 Cd~Cd~s~H~~CL~pp--~~vP~g~W~C~~C~~~ 485 (777)
...|+..||..|+... .........||.|+..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 3458889999999854 1111345689999974
No 149
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=68.51 E-value=2.3 Score=34.41 Aligned_cols=44 Identities=16% Similarity=0.489 Sum_probs=30.6
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|..
T Consensus 10 ~~~~C~vC~~~g~----ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGGE----IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCSS----EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCCc----EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4568999987421 233355889999999986432 3467999954
No 150
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.13 E-value=2.8 Score=32.73 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=27.8
Q ss_pred ccccccccccccccceeec-CCCCcccHhhHHHH----HhcCCCCCccc
Q 004044 345 VCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEW----SKVESRCPLCK 388 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~-~C~H~FC~~CI~~w----~~~~~~CP~CR 388 (777)
.|.||...+.......... .|..+||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5888988775332112224 58889999998621 12456799984
No 151
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=64.86 E-value=1.7 Score=43.55 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=30.8
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
....|.||...-. ......|...||..|+...+. ..+.||.|+.
T Consensus 6 ~~~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 6 NEDWCAVCQNGGD----LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SCSSBTTTCCCEE----EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCc----eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 4467999986532 233455899999999976543 2467999964
No 152
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.71 E-value=4.3 Score=38.52 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=31.2
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH-----------hcCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----------KVESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~-----------~~~~~CP~CR 388 (777)
....|.||.+.-. ......|..+||..||.+-+ ...+.||+|+
T Consensus 62 ~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 62 MDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 4467999998643 33445689999999998433 1347799996
No 153
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=64.16 E-value=1.7 Score=35.10 Aligned_cols=45 Identities=18% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~ 390 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|...
T Consensus 8 ~~~~C~vC~~~g~----ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGE----LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSS----CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCC----EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4567999986421 223355889999999985332 34679999643
No 154
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=63.06 E-value=5.4 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=30.5
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.....+.-..|+..||..|+... + .....||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~--~-~~~~~CP~Cr~~ 61 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPW--L-EQHDSCPVCRKS 61 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHH--H-TTTCSCTTTCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHH--H-HcCCcCcCcCCc
Confidence 4689999776433222222348888999999854 1 123589999975
No 155
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=62.15 E-value=2.1 Score=41.85 Aligned_cols=43 Identities=19% Similarity=0.503 Sum_probs=30.2
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
...|.||...-. ......|...||..|+..-+. ..+.||.|+.
T Consensus 4 ~~~C~~C~~~g~----ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 4 EDWCAVCQNGGE----LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSSCTTTCCCSS----CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccCCCCCe----eeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 467999986522 334455899999999875443 3467999964
No 156
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.11 E-value=2.6 Score=37.06 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=27.6
Q ss_pred CCcccccccccccccccceeecC--CC-CcccHhhHHHHH--hcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--C~-H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (777)
....| ||....... ...... |. .+||..|+.--. ...+.||.|+..
T Consensus 35 e~~yC-iC~~~~~g~--MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCSC--CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCCC--EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 34568 998865321 112233 55 699999997211 134679999653
No 157
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.89 E-value=1.3 Score=36.38 Aligned_cols=44 Identities=20% Similarity=0.485 Sum_probs=30.6
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|..
T Consensus 7 ~~~~C~vC~~~g~----ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGGE----LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCSS----CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCCC----EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4578999997521 234456899999999984332 3467999954
No 158
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=60.84 E-value=4.8 Score=30.67 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=30.1
Q ss_pred cccccCcCCCCCc-ccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDG-LMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~-~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-..+ .......|+..||..|+... + .....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w--~-~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMW--L-GSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT--T-TTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHH--H-HcCCcCcCCCCE
Confidence 5788997764322 12223358888999999864 1 224679999863
No 159
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.13 E-value=5.5 Score=37.20 Aligned_cols=44 Identities=23% Similarity=0.559 Sum_probs=30.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH------H-----hcCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW------S-----KVESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w------~-----~~~~~CP~CR~ 389 (777)
....|.||.+.-. ......|...||..||.+- . ...+.|+.|+-
T Consensus 56 ~~~~C~vC~dGG~----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSE----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCe----eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456999998643 2334568999999999853 1 12478999953
No 160
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.51 E-value=2.5 Score=34.38 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcccccccccccc-cccceeecCCCCcccHhhHHHHH-------hcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIMEWS-------KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l~~C~H~FC~~CI~~w~-------~~~~~CP~CR~~ 390 (777)
....|.||...... .........|...||..|+..-+ ...+.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45789999976421 11122335589999999998422 245789999644
No 161
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.31 E-value=2.5 Score=40.90 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=30.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH-----hcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~-----~~~~~CP~CR~~ 390 (777)
....| ||...............|..|||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45679 9987653221112234589999999996211 235679999754
No 162
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.62 E-value=2 Score=39.67 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=31.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR 388 (777)
....|.+|...|.-.......-.||.+||..|..........|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34689999998864433455677999999999876554445577773
No 163
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.61 E-value=1.9 Score=35.54 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
+...|.+|...-.....+....|+..||..|+... + .....||.|+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w--~-~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKW--L-KANRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHH--H-HHCSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHH--H-HcCCcCcCcCCc
Confidence 34679999876443333444458888999999854 0 113479999874
No 164
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=54.07 E-value=7.6 Score=47.30 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=41.5
Q ss_pred CCcccccccccccccccceeecCCC-CcccHhhHHHHHhcCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCS-HYFCFTCIMEWSKVESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~-H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (777)
..+.|||-++.+. .||+++-| ++|-+.+|.+|+....+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~----DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMK----DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHh----CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3478999999887 78999887 699999999999988899998888764
No 165
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.10 E-value=7.4 Score=35.95 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=24.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHH
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
...|.+|...|......-..-.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999998864333345567999999988754
No 166
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.05 E-value=7.3 Score=29.91 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=28.5
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
.|.||...-... .......|...||..|+..=+. ..+.||.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998653211 1223356899999999964332 2467999964
No 167
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.15 E-value=4.2 Score=33.99 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=27.1
Q ss_pred CCcccccccccccccccceeecC--CC-CcccHhhHHHHH--hcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--C~-H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (777)
....| ||..... + ....... |. .+||..||.--. ...+.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 34568 8987643 1 1111233 55 699999997211 134679999643
No 168
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.02 E-value=5.1 Score=32.40 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=31.7
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+........+...||.|+..
T Consensus 20 ~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI---DCGHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSEEEC---TTCCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCeEEc---CCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 46799998865533333 688889999988541111345689999874
No 169
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.41 E-value=4.4 Score=40.06 Aligned_cols=43 Identities=26% Similarity=0.563 Sum_probs=29.7
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~ 390 (777)
..|.||...-. ......|...||..|+..-+. ..+.||.|+..
T Consensus 3 ~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS----CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCc----eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 57999996532 233455889999999974332 34679999643
No 170
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.45 E-value=2.4 Score=33.52 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=29.5
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR 388 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|.
T Consensus 8 ~~~~C~vC~~~g~----ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCSSC----CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCCCe----EEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4567999987521 233456899999999985332 346699985
No 171
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.39 E-value=3.4 Score=34.99 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCcccccccccccccccceeec--CCCCcccHhhHHHHHh---------cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK---------VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~C~H~FC~~CI~~w~~---------~~~~CP~CR~~ 390 (777)
....| ||-.....+. ..-.. .|..|||..|+.--.. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34668 7988743221 11223 6999999999963211 24669999653
No 172
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.89 E-value=5 Score=35.06 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=30.6
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~ 389 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|..
T Consensus 24 n~~~C~vC~~~g~----LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 24 SATICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSCCSSSCSSSC----CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCcCcCcCCCCC----EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3467999997532 234455889999999975443 3467999953
No 173
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.78 E-value=4.3 Score=35.48 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.1
Q ss_pred CCcccccCcCC----CCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~----~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...+|.+|+.. .+.+..+.|..|.-+++..|+.- +.-+|+-.||.|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY--ErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY--ERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH--HHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH--HHhccCccccccCCc
Confidence 44799999875 23446888999999999999884 556888999999863
No 174
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.65 E-value=3.3 Score=35.24 Aligned_cols=21 Identities=24% Similarity=0.743 Sum_probs=17.0
Q ss_pred CCCCcccHhhHHHHHhcCCCCCc
Q 004044 364 CCSHYFCFTCIMEWSKVESRCPL 386 (777)
Q Consensus 364 ~C~H~FC~~CI~~w~~~~~~CP~ 386 (777)
.|++.||+.|...|.. .+|..
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSSS
T ss_pred CCCCeeccccCccccC--Ccccc
Confidence 6999999999999966 45643
No 175
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=49.41 E-value=5.1 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCcccccccccc-cccccceeecCCCCcccHhhHHHHH--hcCCCCCcccc
Q 004044 342 AKQVCGICLSEE-DKRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~-~~~~~~~~l~~C~H~FC~~CI~~w~--~~~~~CP~CR~ 389 (777)
....|.||...- ...........|.-.||..|+..-. ...+.||.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 457899998763 1111223335689999999997432 23567999964
No 176
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.24 E-value=9.8 Score=33.04 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w 377 (777)
....|.+|...|.-....-....||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999988643333455679999999998754
No 177
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=48.99 E-value=8.5 Score=34.19 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.5
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ .|+..||..|+... +-.+...||.|+..
T Consensus 16 ~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~ 59 (115)
T 3l11_A 16 CQCGICMEILVEPVTL---PCNHTLCKPCFQST--VEKASLCCPFCRRR 59 (115)
T ss_dssp HBCTTTCSBCSSCEEC---TTSCEECHHHHCCC--CCTTTSBCTTTCCB
T ss_pred CCCccCCcccCceeEc---CCCCHHhHHHHHHH--HhHCcCCCCCCCcc
Confidence 5799998765533333 68888999998853 22346789999974
No 178
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=48.69 E-value=4 Score=36.86 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=28.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
..+|.+|+... |+.|...||++|++++ .|.|..|+.
T Consensus 7 C~~C~~C~~~~-------C~~C~~c~~~~~~~~~------~~~~~~c~~ 42 (117)
T 4bbq_A 7 CRKCKACVQGE-------CGVCHYCRDMKKFGGP------GRMKQSCVL 42 (117)
T ss_dssp CSCSHHHHSCC-------CSCSHHHHHSGGGTSC------CCSCCCCGG
T ss_pred CCcCcCcCCcC-------CCCCCCCcCCcccCCC------Cccccchhh
Confidence 46777787642 9999999999999864 478888865
No 179
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.17 E-value=6.8 Score=32.99 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=32.6
Q ss_pred cccccCcCCCCCcccccccccccccccccccCC-CCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-.. -+.|..|...||.+|+.-. +.. ..-.||.|+..
T Consensus 16 ~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~ 61 (74)
T 2ct0_A 16 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 61 (74)
T ss_dssp CBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSC
T ss_pred CcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCc
Confidence 679999876543 3468899999999999854 111 23579999863
No 180
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=47.49 E-value=4.4 Score=33.51 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=28.8
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH---hcCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS---KVESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~---~~~~~CP~CR~ 389 (777)
....| ||....... ...-...|..+||..|+.--. .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~-~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTC-CEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCC-CEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44678 998765421 111224489999999997322 13456999964
No 181
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=47.44 E-value=6.4 Score=29.86 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=30.2
Q ss_pred CcccccCcCCCCC-cccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDD-GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~-~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.. ........|+..||..|+... + .....||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~--~-~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEM--L-KEGYRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHH--H-HHTCCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHH--H-HcCCcCCCCCCc
Confidence 3678999876421 223334558888999999853 0 011679999874
No 182
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=47.39 E-value=4 Score=32.64 Aligned_cols=45 Identities=20% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~ 390 (777)
....|.||...-. ......|...||..|+..-+. ..+.||.|...
T Consensus 4 ~~~~C~vC~~~g~----ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSS----CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCc----EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 3568999987521 233456899999999984332 34679999643
No 183
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.18 E-value=4.9 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=29.0
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHH---------HhcCCCCCccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW---------SKVESRCPLCKQR 390 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w---------~~~~~~CP~CR~~ 390 (777)
...| ||........ ..-...|..+||..|+.-- ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3567 8988764221 1122458999999999521 1235779999653
No 184
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=47.16 E-value=4.2 Score=34.94 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=30.3
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.....+....|+..||..|+... + .....||.|+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w--l-~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW--L-QKSGTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHH--H-TTTCBCTTTCCB
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHH--H-HcCCcCcCcCcc
Confidence 4679999765432222333348889999999864 1 123489999863
No 185
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=46.68 E-value=2.8 Score=33.70 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=29.8
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.....+....|+..||..|+... + .....||.|+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~--~-~~~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQW--L-ITNKKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHH--H-HHCSBCTTTCSB
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHH--H-HcCCCCcCcCcc
Confidence 4679999765432222333458888999999854 0 112369999874
No 186
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=46.64 E-value=4.7 Score=35.68 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=27.5
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHh---cCCCCCcccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLCKQ 389 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~---~~~~CP~CR~ 389 (777)
..| ||......+ .......|..+||..|+..-.. ..+.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 787654432 1222355899999999974222 2367999963
No 187
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.34 E-value=5.9 Score=34.42 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCcccccccccc-cccccceeecCCCCcccHhhHHHHH--hcCCCCCccccc
Q 004044 342 AKQVCGICLSEE-DKRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~-~~~~~~~~l~~C~H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (777)
....|.||.... ...........|.-.||..|+..-+ ...+.||.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 446899999763 1111122335588999999997432 235779999644
No 188
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=46.29 E-value=2.7 Score=33.84 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=31.9
Q ss_pred CCcccccCcCCCCCcccccc--cccccccccccccCCCCCC-CCCccccCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLC--DICDSSAHTYCVGLGRVVP-EGNWYCDGCRP 484 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllC--d~Cd~s~H~~CL~pp~~vP-~g~W~C~~C~~ 484 (777)
+...|.+|........++-| .+.-..+|..||... +- .+++.|+-|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W--~~~~~~~~C~~C~~ 55 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTW--LTISRNTACQICGV 55 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHH--HHHHTCSBCTTTCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHH--HHhCCCCccCCCCC
Confidence 34679999776554445554 233357999999965 11 24689999986
No 189
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.59 E-value=3.2 Score=34.51 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH----hcCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS----KVESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~----~~~~~CP~CR~~ 390 (777)
....| ||......+....-...|..+||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7987653221112224589999999997322 234569999643
No 190
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.34 E-value=11 Score=32.14 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
....|.+|...|.-....--.-.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 44679999998864333345566999999998764
No 191
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.29 E-value=3.7 Score=35.64 Aligned_cols=49 Identities=12% Similarity=0.286 Sum_probs=32.5
Q ss_pred Ccccccccccccc-cccceeecCCCCcccHhhHHHHH--------hcCCCCCcccccc
Q 004044 343 KQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIMEWS--------KVESRCPLCKQRF 391 (777)
Q Consensus 343 ~~~C~ICle~~~~-~~~~~~l~~C~H~FC~~CI~~w~--------~~~~~CP~CR~~~ 391 (777)
...|.||...-.. .........|...||..|+..-+ ...+.||.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4789999976321 11123335589999999998533 2357899996544
No 192
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=45.18 E-value=11 Score=32.19 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=25.5
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
....|.+|...|.-....--.-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44679999998864333345566999999998764
No 193
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.26 E-value=9.1 Score=32.12 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=19.7
Q ss_pred ccccccccccccCCCCCCCCCccccCCCCC
Q 004044 456 ICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 456 ~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
.|+..||..|+... +- ..-.||.|+..
T Consensus 47 ~C~H~FH~~Ci~~W--l~-~~~~CP~CR~~ 73 (81)
T 2ecl_A 47 ECNHSFHNCCMSLW--VK-QNNRCPLCQQD 73 (81)
T ss_dssp TTSCEEEHHHHHHH--TT-TCCBCTTTCCB
T ss_pred CCCCccChHHHHHH--HH-hCCCCCCcCCC
Confidence 58999999999864 11 12379999973
No 194
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.21 E-value=13 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.5
Q ss_pred cccccccccccccccceeecCCCCcccHhhHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~ 375 (777)
..|.+|...|.-....--.-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999886433334456699999998875
No 195
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.58 E-value=12 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~ 375 (777)
....|.+|...|.-....--.-.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3467999999886433334456699999988853
No 196
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.76 E-value=9.8 Score=30.73 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
+...|.+|...-....++ .|+..||..|+... + .....||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~--~-~~~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL---PCKHVFCYLCVKGA--S-WLGKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE---TTTEEEEHHHHHHC--T-TCSSBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEc---cCCCHHHHHHHHHH--H-HCCCcCcCcCch
Confidence 346799998765433333 48888999998853 1 123689999873
No 197
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.59 E-value=12 Score=38.17 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=33.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~ 484 (777)
...|.+|..--.. -..|..|...||.+|+.-. ....+.-.||.|..
T Consensus 180 i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~-~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKY-FQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCSS--CEECSSSCCEECHHHHHHH-TTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHhC--CcccCccChHHHHHHHHHH-HHhCCCCCCCCCCC
Confidence 3679999876442 3669889999999999743 11123567999976
No 198
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.53 E-value=5.8 Score=32.06 Aligned_cols=37 Identities=22% Similarity=0.552 Sum_probs=23.6
Q ss_pred cccccccccccccc--cceeecC--CCCcccHhhHHHHHhc
Q 004044 344 QVCGICLSEEDKRR--LRGTLNC--CSHYFCFTCIMEWSKV 380 (777)
Q Consensus 344 ~~C~ICle~~~~~~--~~~~l~~--C~H~FC~~CI~~w~~~ 380 (777)
..||-|.-.++... ...+... |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46999988775321 1222233 7788888888877654
No 199
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.17 E-value=12 Score=37.93 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=24.7
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
..|.+|...|.-......+-.||++||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 579999988864433455677999999988754
No 200
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.41 E-value=9 Score=31.06 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=30.2
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.....+.-..|+..||..|+... + .....||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~--~-~~~~~CP~Cr~~ 61 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKW--L-EVRKVCPLCNMP 61 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHH--H-HHCSBCTTTCCB
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHH--H-HcCCcCCCcCcc
Confidence 4679999876443323322258888999999854 0 012379999874
No 201
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.66 E-value=14 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w 377 (777)
....|.+|...|.-....--.-.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 345799999988643333445669999999997643
No 202
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.54 E-value=12 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=24.5
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHH
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~ 376 (777)
..|.+|...|.-....--.-.||++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 589999998864333445567999999888653
No 203
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.87 E-value=54 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=28.1
Q ss_pred CCcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 435 e~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
+...|.+|...-....++ .|+..||..|+.. ....||.|+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEA------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCSCS---TTSCCSBTTTCSS------SSSSCSSCCSS
T ss_pred cCCCceEeCCccCCeEEc---CCCCcccHHHHcc------CCCCCCcCCcE
Confidence 346799998765544444 3666777777663 34579999874
No 204
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=38.78 E-value=12 Score=31.56 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=30.5
Q ss_pred CcccccCcCCCCC--cccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDD--GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~--~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.. ..++-| .|+..||..|+.-. ...+...||.|+..
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~--~~~~~~~CP~CR~~ 59 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRI--RTDENGLCPACRKP 59 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHH--TTSSCSBCTTTCCB
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCHHHHHHH--HhcCCCCCCCCCCc
Confidence 3679999875421 122223 58888899998742 11256799999984
No 205
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.56 E-value=8.2 Score=33.85 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=30.3
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ .|+..||..|+........+...||.|+..
T Consensus 22 ~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 22 LECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 (112)
T ss_dssp TSCSSSCCCCSSCCBC---TTSCCCCSHHHHHHHHSSSSSCCCTTTSCC
T ss_pred CCCcccChhhcCeEEC---CCCCHHHHHHHHHHHHhCCCCCCCcCCCCc
Confidence 5799998765433333 588888888987431111244789999874
No 206
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=37.26 E-value=18 Score=29.46 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=31.1
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC-CCC---CCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVV---PEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~v---P~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+.-. ... ..+...||.|+..
T Consensus 12 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred CCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 36799998765433333 58888999998854 110 1235789999974
No 207
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.35 E-value=14 Score=28.11 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=28.5
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGC 482 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C 482 (777)
...|.+|...-....++ .|+..||..|+............||.|
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46799998775544343 578788999987531111245678877
No 208
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.19 E-value=14 Score=31.22 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=29.4
Q ss_pred CcccccCcCCCCC-ccc-ccc--cccccccccccccCCCCCC-CCCccccCCCCC
Q 004044 436 NVICSECHQGGDD-GLM-LLC--DICDSSAHTYCVGLGRVVP-EGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~-~~l-llC--d~Cd~s~H~~CL~pp~~vP-~g~W~C~~C~~~ 485 (777)
...|.+|...... ..+ +-| .++...||..||... +- .+...||-|+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~W--l~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQW--IKSSDTRCCELCKYE 67 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHH--HHHHCCSBCSSSCCB
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHH--HhhCCCCCCCCCCCe
Confidence 4689999865432 222 223 223478999999864 11 124689999973
No 209
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=35.65 E-value=8 Score=33.87 Aligned_cols=45 Identities=18% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCcccccccccccccccceeecCCC---CcccHhhHHHHH--hcCCCCCc-ccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCS---HYFCFTCIMEWS--KVESRCPL-CKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~---H~FC~~CI~~w~--~~~~~CP~-CR~ 389 (777)
....| ||....... ......|. .+||..||.--. ...+.||. |+.
T Consensus 25 ~~~yC-iC~~~~~g~--MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYGP--MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSSS--EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCCC--EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44568 998754321 11223344 799999996211 23567999 963
No 210
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.56 E-value=19 Score=29.11 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=30.1
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~C 387 (777)
..|-.|+..|.... .-..+.|++.||.+|=.--.+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999988874221 12357799999999976444445569988
No 211
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=35.49 E-value=17 Score=39.49 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=32.4
Q ss_pred CcccccCcCCCCC---ccccccc--ccccccccccccCC-CCCCCC-------CccccCCCCC
Q 004044 436 NVICSECHQGGDD---GLMLLCD--ICDSSAHTYCVGLG-RVVPEG-------NWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~---~~lllCd--~Cd~s~H~~CL~pp-~~vP~g-------~W~C~~C~~~ 485 (777)
...|.+|-..... -....|. .|+..||..||... ...+.+ --.||.|+..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 3579999765332 2345688 79999999999753 111111 1359999874
No 212
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.21 E-value=9.6 Score=31.36 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=31.2
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC-CC--CCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RV--VPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp-~~--vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+... .. ...+...||.|+..
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 46799998875543333 58888899998743 11 12345789999974
No 213
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=35.11 E-value=9 Score=35.42 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=29.3
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ .|+..||..|+... -...-.||.|+..
T Consensus 54 ~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~---~~~~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL---NCAHSFCSYCINEW---MKRKIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSEEEE---TTSCEEEHHHHHHH---TTTCSBCTTTCCB
T ss_pred CCCcccCcccCCceEC---CCCCCccHHHHHHH---HHcCCcCCCCCCc
Confidence 4699998775544333 47778999998743 1223569999874
No 214
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=34.49 E-value=21 Score=41.56 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=24.1
Q ss_pred cccccCcCC--CCCccccccccccccccccccc
Q 004044 437 VICSECHQG--GDDGLMLLCDICDSSAHTYCVG 467 (777)
Q Consensus 437 ~~C~vC~~~--~~~~~lllCd~Cd~s~H~~CL~ 467 (777)
.+|..|+.. +-...-+.|..|...+|..|..
T Consensus 114 ~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 146 (674)
T 3pfq_A 114 TFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 146 (674)
T ss_dssp CCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTS
T ss_pred CCCCccccccchhhcCccccccCCcchhhhhhh
Confidence 689999765 2222467799999999999987
No 215
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.33 E-value=23 Score=38.89 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=31.3
Q ss_pred CCcccccccccccccccceeec--CCCCcccHhhHHHHHh----------cCCCCCcccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK----------VESRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~C~H~FC~~CI~~w~~----------~~~~CP~CR~ 389 (777)
....|.||-+.-. .-... .|...||..||...+- ..+.|=+|.-
T Consensus 92 ~~~yCr~C~~Gg~----l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGET----LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCSS----CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCCe----EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3467999987543 23344 6899999999998762 2477999953
No 216
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.19 E-value=8.5 Score=42.12 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHH
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
....|.+|...|.-......+..||++||..|...+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3467999998886332334556699999999997553
No 217
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.67 E-value=26 Score=33.78 Aligned_cols=43 Identities=21% Similarity=0.520 Sum_probs=29.9
Q ss_pred CCcccccccccccccccceeec--CCCCcccHhhHHHHHh----------cCCCCCccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK----------VESRCPLCK 388 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~C~H~FC~~CI~~w~~----------~~~~CP~CR 388 (777)
....|.||-+.-. .-... .|...||..||..++- ..+.|=+|.
T Consensus 78 ~~~yC~wC~~Gg~----l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGGRE----VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCCSE----EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCCCe----EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 3467999997532 22223 5889999999987752 236799995
No 218
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.98 E-value=7.3 Score=34.08 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=31.4
Q ss_pred CCcccccccccccccccceeecCCCCcccHhhHHHHHh----cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~ 390 (777)
....|.||...-... .......|...||..|+..=+. ..+.||.|...
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 446799999764211 1233355899999999973322 34679999654
No 219
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.52 E-value=7 Score=33.55 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=21.1
Q ss_pred cccccccccc--cccceeecCCCCcccHhhHHHHH
Q 004044 346 CGICLSEEDK--RRLRGTLNCCSHYFCFTCIMEWS 378 (777)
Q Consensus 346 C~ICle~~~~--~~~~~~l~~C~H~FC~~CI~~w~ 378 (777)
||-|-..+.. .......+.|++.||+.|-..|-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchh
Confidence 7766554321 11122345599999999999993
No 220
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.31 E-value=18 Score=29.59 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=31.0
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCC---CCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG---RVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp---~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+... .....+...||.|+..
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA---DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCTTTCSCCSSCEEC---TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred CCCCcCCChhhCcceeC---CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 36799998775443333 47888888898743 1112346889999874
No 221
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=32.15 E-value=7.8 Score=34.98 Aligned_cols=44 Identities=16% Similarity=0.374 Sum_probs=30.6
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ .|+..||..|+... +......||.|+..
T Consensus 53 ~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~ 96 (124)
T 3fl2_A 53 FQCICCQELVFRPITT---VCQHNVCKDCLDRS--FRAQVFSCPACRYD 96 (124)
T ss_dssp TBCTTTSSBCSSEEEC---TTSCEEEHHHHHHH--HHTTCCBCTTTCCB
T ss_pred CCCCcCChHHcCcEEe---eCCCcccHHHHHHH--HhHCcCCCCCCCcc
Confidence 5799998765543333 68888999998753 11234589999974
No 222
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.60 E-value=19 Score=33.65 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCccccccccccccc-ccceeecCCCCcccHhhHHHHHh----cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~C~H~FC~~CI~~w~~----~~~~CP~CR~~ 390 (777)
....|.||...|.-. ....+...|.|.+|..|-..-.. ..+.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 447899999987421 12245566999999888653211 12447777654
No 223
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.52 E-value=10 Score=30.11 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=30.6
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+... +..+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQT---ECGHRFCESCMAAL--LSSSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCCC---SSSCCCCHHHHHHH--HTTSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeEC---CCCCHHHHHHHHHH--HHhCcCCCCCCCcC
Confidence 36799998765433332 68888999998853 11345679999874
No 224
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=31.48 E-value=35 Score=37.22 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCccccccccccccccccee-ecCCCCcccHhhHH--HHHh--cCCCCCcccccccc
Q 004044 342 AKQVCGICLSEEDKRRLRGT-LNCCSHYFCFTCIM--EWSK--VESRCPLCKQRFKT 393 (777)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~-l~~C~H~FC~~CI~--~w~~--~~~~CP~CR~~~~~ 393 (777)
-.+.|||=+..+. .|+ ...|.|.-|++-.. .... ..+.||+|.+.+..
T Consensus 248 vSL~CPlS~~ri~----~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 248 MSLQCPISYTRMK----YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EESBCTTTSSBCS----SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EeecCCCcccccc----ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 3467998887765 333 35599997776532 2222 35779999877644
No 225
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=30.38 E-value=37 Score=36.87 Aligned_cols=47 Identities=17% Similarity=0.438 Sum_probs=30.7
Q ss_pred Cccccccccccccccccee-ecCCCCcccHhhHH--HHHh--cCCCCCcccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGT-LNCCSHYFCFTCIM--EWSK--VESRCPLCKQRFKT 393 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~-l~~C~H~FC~~CI~--~w~~--~~~~CP~CR~~~~~ 393 (777)
.+.|||=+..+. +|+ ...|.|.-|++-.. .... ..+.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~----~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLT----IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCS----SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceec----cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 467998887775 333 35599997776443 2222 35779999876643
No 226
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.22 E-value=8.3 Score=30.29 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=27.9
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGC 482 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C 482 (777)
...|.+|...-....++ .|+..||..|+............||.|
T Consensus 20 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI---DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEEC---TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEe---CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46799998765543333 688889999987530101234578877
No 227
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.11 E-value=17 Score=32.27 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhc
Q 004044 368 YFCFTCIMEWSKV 380 (777)
Q Consensus 368 ~FC~~CI~~w~~~ 380 (777)
-||+.|+..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999763
No 228
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.95 E-value=13 Score=31.05 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=27.7
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHh-----cCCCCCccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQR 390 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~-----~~~~CP~CR~~ 390 (777)
..| ||...+.......-...|.-+||..|+.--.. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 445 78776532211122244899999999963221 24669999754
No 229
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.93 E-value=6.3 Score=31.90 Aligned_cols=47 Identities=26% Similarity=0.503 Sum_probs=29.6
Q ss_pred CCccccccccc-ccccccceeecCCCCcccHhhHHHHHhcC----CCCCcccc
Q 004044 342 AKQVCGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWSKVE----SRCPLCKQ 389 (777)
Q Consensus 342 ~~~~C~ICle~-~~~~~~~~~l~~C~H~FC~~CI~~w~~~~----~~CP~CR~ 389 (777)
...+|.||+-. |-.+. -....-|.-.||..|-..|...+ +.|-+|++
T Consensus 8 d~~~C~iC~KTKFADG~-Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGC-GHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSC-CEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCC-CccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 44689999975 43321 12334477888888877665332 34878764
No 230
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.88 E-value=18 Score=32.28 Aligned_cols=13 Identities=31% Similarity=0.991 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhc
Q 004044 368 YFCFTCIMEWSKV 380 (777)
Q Consensus 368 ~FC~~CI~~w~~~ 380 (777)
-||+.|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999763
No 231
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.49 E-value=25 Score=33.58 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=32.2
Q ss_pred CCccccccccccccc-ccceeecCCCCcccHhhHHHHHh--cCCCCCccccc
Q 004044 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSK--VESRCPLCKQR 390 (777)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~C~H~FC~~CI~~w~~--~~~~CP~CR~~ 390 (777)
....|.||...|.-. ....+...|.|.+|..|-. |.. ..+.|-+|.+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 347899999986422 1234556699999999973 432 23558888654
No 232
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=29.45 E-value=9.4 Score=36.24 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=31.4
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.. .+.+..|+..||..|+... +-.+...||.|+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITA--LRSGNKECPTCRKK 99 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHH--HHTTCCBCTTTCCB
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHH--HHhCcCCCCCCCCc
Confidence 3589999876543 2333478888999998753 11235779999974
No 233
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=29.01 E-value=13 Score=30.34 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=31.2
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ .|+..||..|+... +..+...||.|+..
T Consensus 8 ~~~C~IC~~~~~~Pv~~---~CgH~fc~~Ci~~~--~~~~~~~CP~C~~~ 52 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV---STGQTYERSSIQKW--LDAGHKTCPKSQET 52 (78)
T ss_dssp SSSCTTTSCCCSSEEEE---TTTEEEEHHHHHHH--HTTTCCBCTTTCCB
T ss_pred cCCCCCccccccCCEEc---CCCCeecHHHHHHH--HHHCcCCCCCCcCC
Confidence 46899998765433333 58888999998753 22346789999874
No 234
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=28.14 E-value=17 Score=32.45 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.6
Q ss_pred cccccccccccccCCCCCCCCCccccCCCCC
Q 004044 455 DICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 455 d~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|...||..|+... + ...-.||.|+..
T Consensus 71 ~~C~H~FH~~Ci~~W--l-~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCNHAFHFHCISRW--L-KTRQVCPLDNRE 98 (106)
T ss_dssp ETTSCEEEHHHHHHH--H-TTCSBCSSSCSB
T ss_pred cccCcEECHHHHHHH--H-HcCCcCcCCCCc
Confidence 468999999999864 1 124579999873
No 235
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.51 E-value=9.8 Score=31.73 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=30.4
Q ss_pred CcccccCcCCCCCcc-cccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGL-MLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~-lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.... ...-..|+..||..|+........+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 367999987644311 01112588889999988530011234789999974
No 236
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=27.46 E-value=10 Score=26.59 Aligned_cols=11 Identities=55% Similarity=1.633 Sum_probs=9.8
Q ss_pred CCCccccCCCC
Q 004044 474 EGNWYCDGCRP 484 (777)
Q Consensus 474 ~g~W~C~~C~~ 484 (777)
+|+|-|..|+.
T Consensus 16 egdwcchkcvp 26 (36)
T 4b2u_A 16 EGDWCCHKCVP 26 (36)
T ss_dssp GCCSSSSEEEE
T ss_pred ccCeeeecccc
Confidence 78999999986
No 237
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.15 E-value=18 Score=36.84 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=26.0
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHh----c-CCCCCcccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----V-ESRCPLCKQ 389 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~-~~~CP~CR~ 389 (777)
..|.||...-... ..-....|...||..|+..=+. . .+.||.|..
T Consensus 175 c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887642211 1223355899999999984332 2 467999964
No 238
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=26.72 E-value=8.1 Score=32.79 Aligned_cols=47 Identities=17% Similarity=0.491 Sum_probs=30.0
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ ..|+..||..|+... ....+...||.|+..
T Consensus 13 ~~~C~IC~~~~~~p~~~--~~CgH~fC~~Ci~~~-~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVI--PCCGNSYCDECIRTA-LLESDEHTCPTCHQN 59 (92)
T ss_dssp TTEETTTTEECSSCEEC--TTTCCEECHHHHHHH-HHHCTTCCCTTTCCS
T ss_pred CCCCCCCChhhcCceEC--CCCCCHHHHHHHHHH-HHhcCCCcCcCCCCc
Confidence 46899998765433333 237888888888743 001134689999974
No 239
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=26.72 E-value=13 Score=33.95 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCCCccccCCCCC
Q 004044 455 DICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 455 d~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|...||..|+... +- ..-.||-|+..
T Consensus 82 ~~C~H~FH~~CI~~W--l~-~~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRW--LK-TRQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CCcCceEcHHHHHHH--HH-cCCcCCCCCCe
Confidence 368889999999864 11 13569999873
No 240
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.41 E-value=18 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=25.8
Q ss_pred ccccccccccccccceeecCCCCcccHhhHHHHHh----cC-CCCCcccc
Q 004044 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VE-SRCPLCKQ 389 (777)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~----~~-~~CP~CR~ 389 (777)
.|.||...-... .......|...||..|+..-+. .. +.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 366665543211 1122245889999999985443 23 67999963
No 241
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.85 E-value=8.6 Score=33.08 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=24.7
Q ss_pred cccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCcccccc
Q 004044 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (777)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~ 391 (777)
..||+|...+.... ++.+|..|-....... .||-|.+++
T Consensus 3 ~~CP~C~~~l~~~~--------~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNG--------DTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECS--------SEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccCC--------CceECccccccCCCcc-cCcchhhHH
Confidence 67999998765321 1445666665444444 799997665
No 242
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.64 E-value=45 Score=29.60 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=28.9
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-....++ ..|+..||..|+.-. +. ..||.|+..
T Consensus 22 ~~~C~IC~~~~~~pv~~--~~CgH~fC~~Ci~~~--~~---~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IG---TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSSCBCC--CSSSCCBCTTTGGGG--TT---TBCSSSCCB
T ss_pred CCCCCCCChHhhCccEe--CCCCCHHHHHHHHHH--hc---CCCcCCCCc
Confidence 36799998765543333 157778888888753 11 579999875
No 243
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.39 E-value=16 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=29.7
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ ..|+..||..|+... + .....||.|+..
T Consensus 23 ~~C~IC~~~~~~p~~~--~~CgH~fC~~Ci~~~--~-~~~~~CP~Cr~~ 66 (99)
T 2y43_A 23 LRCGICFEYFNIAMII--PQCSHNYCSLCIRKF--L-SYKTQCPTCCVT 66 (99)
T ss_dssp TBCTTTCSBCSSEEEC--TTTCCEEEHHHHHHH--H-TTCCBCTTTCCB
T ss_pred CCcccCChhhCCcCEE--CCCCCHhhHHHHHHH--H-HCCCCCCCCCCc
Confidence 6799998765433222 468888999998753 1 123579999874
No 244
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=23.30 E-value=12 Score=32.56 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=31.8
Q ss_pred CcccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 436 ~~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
...|.+|...-.. .+.|..|+..||..|+... +-.....||.|+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~--~~~~~~~CP~Cr~~ 67 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRW--LTEQRAQCPHCRAP 67 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHH--HHHTCSBCTTTCCB
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHH--HHHCcCCCCCCCCc
Confidence 3679999876543 3445678999999999853 11112689999974
No 245
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.11 E-value=14 Score=39.33 Aligned_cols=43 Identities=26% Similarity=0.629 Sum_probs=30.4
Q ss_pred Ccccccccccccccccceeec----CCC--CcccHhhHHHHHhcCCCCCcccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLN----CCS--HYFCFTCIMEWSKVESRCPLCKQ 389 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~----~C~--H~FC~~CI~~w~~~~~~CP~CR~ 389 (777)
...||||-..-. ..++. .=| +.+|.-|-..|.-....||.|..
T Consensus 182 ~~~CPvCGs~P~----~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 182 RTLCPACGSPPM----AGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp CSSCTTTCCCEE----EEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred CCCCCCCCCcCc----eeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 467999988643 12221 122 56899999999888889999954
No 246
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.92 E-value=32 Score=30.56 Aligned_cols=43 Identities=23% Similarity=0.489 Sum_probs=27.1
Q ss_pred CcccccccccccccccceeecCCCCcccHhhHHHHHhcCCCCCccccccccc
Q 004044 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (777)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~C~H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (777)
...||+|...+... =++.+|..|-... .....||.|.+++..+
T Consensus 32 ~~~CP~Cq~eL~~~--------g~~~hC~~C~~~f-~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD--------NGHARCRSCGEFI-EMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE--------TTEEEETTTCCEE-EEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceec--------CCEEECccccchh-hccccCcchhhHHHHH
Confidence 37899999876521 1344577776532 3345699998776443
No 247
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.00 E-value=17 Score=34.24 Aligned_cols=44 Identities=16% Similarity=0.352 Sum_probs=30.0
Q ss_pred cccccCcCCCCCcccccccccccccccccccCCCCCCCCCccccCCCCC
Q 004044 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (777)
Q Consensus 437 ~~C~vC~~~~~~~~lllCd~Cd~s~H~~CL~pp~~vP~g~W~C~~C~~~ 485 (777)
..|.+|...-....++ .|+..||..|+... +-.+...||.|+..
T Consensus 79 ~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~ 122 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTT---ECFHNVCKDCLQRS--FKAQVFSCPACRHD 122 (150)
T ss_dssp TBCTTTSSBCSSEEEC---TTSCEEEHHHHHHH--HHTTCCBCTTTCCB
T ss_pred CEeecCChhhcCCEEc---CCCCchhHHHHHHH--HHhCCCcCCCCCcc
Confidence 5799998765443333 67888899998753 11234579999974
No 248
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.23 E-value=19 Score=25.90 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=9.4
Q ss_pred CCccccccccccc
Q 004044 342 AKQVCGICLSEED 354 (777)
Q Consensus 342 ~~~~C~ICle~~~ 354 (777)
+++.||||+-.+.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 3478888887664
Done!