BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004047
(777 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/680 (37%), Positives = 371/680 (54%), Gaps = 75/680 (11%)
Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P
Sbjct: 1 TTRSWDFLGFPLTVPR-------------RSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
P WKG C+T N+ CN+KIIGAR Y G G +N PRD +GHGTHT
Sbjct: 48 PPPKWKGTCETS---NNFRCNRKIIGARSYHIGRPISPGDVNG------PRDTNGHGTHT 98
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA
Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCW---------NDGCSDTDILAA 148
Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNET 408
+PWL++V A ++DR FV V +G G G ++ ++ + +PLV D+ G ++ +
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTS 267
Query: 409 NQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAH 467
C S+ P +KGKIV+C G + K ++ G G+++ +N +Y+ D++
Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD----GAAGVLM---TSNTRDYA-DSY 319
Query: 468 YLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL 527
LP++ + +D + YI S +P A I ++ T+L+ AP + +F+SRGPN ++
Sbjct: 320 PLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVI 378
Query: 528 KPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDW 587
KPDI+ PG+ ILAAW + + +R + I SGTSMSCPH+ +P W
Sbjct: 379 KPDISGPGVEILAAWPSVAPVGGI---RRNTLFNIISGTSMSCPHITGIATYVKTYNPTW 435
Query: 588 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDY 647
S AAI+SALMTTA N + P F++GSGH P KA PGLVYDA+ DY
Sbjct: 436 SPAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDY 487
Query: 648 LLYLCSHGFSFTNPVFRCPNKPPSAL--------NLNYPSIAI---PNLNGTVIVKRTVT 696
+ +LC G++ T V R + +LNYPS + P+ RT+T
Sbjct: 488 VKFLCGQGYN-TQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLT 546
Query: 697 NVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVF 756
+V S Y P G+++ NP++L F+ +G +KSFT+TVR G K +V
Sbjct: 547 SVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR--------GSIKGFVV 598
Query: 757 -GWYRWTDGLHLVRSPMAVS 775
W+DG+H VRSP+ ++
Sbjct: 599 SASLVWSDGVHYVRSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 360 bits (924), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 243/656 (37%), Positives = 349/656 (53%), Gaps = 57/656 (8%)
Query: 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG 201
GQDVIV ++D+G+WPES SF D+GM +PK WKGIC+ G FN+S+CN+K+IGA Y+ KG
Sbjct: 23 GQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKG 82
Query: 202 FEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLA 261
+N T + S RD DGHGTH AS AG S F G+A GTA G AP ARLA
Sbjct: 83 ILANDPTVNITMN--SARDTDGHGTHCASITAGNFAKGVSHF-GYAPGTARGVAPRARLA 139
Query: 262 IYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGA 321
+YK + F +D++AA+D A+ DGV ++SIS G + D I+I +
Sbjct: 140 VYKFSF---------NEGTFTSDLIAAMDQAVADGVDMISISYGY-RFIPLYEDAISIAS 189
Query: 322 LNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 381
A+ +LV+ SAGN GP SL+N +PW++ V +G DR F G + LG G++I G ++
Sbjct: 190 FGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSL 249
Query: 382 TPYN-LKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440
P + P++Y + + + L PE IV+C F +
Sbjct: 250 FPARAFVRDSPVIYNKT-----LSDCSSEELLSQVENPENT---IVICDDNGDFSDQMRI 301
Query: 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQAR 500
+ + + P ++ P V + ++ Y+K++ PTA I
Sbjct: 302 ITRARLKAAIFISEDPGVFRSATFPN---PGVVVNKKEGKQVINYVKNSVTPTATITFQE 358
Query: 501 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI-VK 559
T L T+PAP +A ++RGP+ I KPDI APG+ ILAA+ + + + +
Sbjct: 359 TYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTD 418
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS-IA 618
Y + SGTSM+ PH HP+WS +AIRSA+MTTA +N PI ++D + A
Sbjct: 419 YILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAA 478
Query: 619 TPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFR----------CPNK 668
TP G+GH P +A DPGLVYDA+ +DY+ LCS +FT F+ C N
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCS--LNFTEEQFKTIARSSASHNCSN- 535
Query: 669 PPSALNLNYPS-IAIPNLNGTVIV-----KRTVTNVGGSKSVYFFSAKPPMGVSVKANPS 722
PSA +LNYPS IA+ ++ G + KRTVTNVG + Y K P ++ +P
Sbjct: 536 -PSA-DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQ 593
Query: 723 ILFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTD--GLHLVRSPMAVS 775
IL F + +K+S+T+T+R +G E + + G W + G H VRSP+ S
Sbjct: 594 ILVFKNKNEKQSYTLTIRYIGDEGQSRNV------GSITWVEQNGNHSVRSPIVTS 643
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+ +F+SRGP A + LKP++ APG I+AA + +S + D YT GT+M+
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 571 PHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRP 630
PHV HP W+ +++AL+ TA + P AD ++G+G
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA----DIVKPDEIAD------IAYGAGRVNA 412
Query: 631 TKAA 634
KAA
Sbjct: 413 YKAA 416
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 23/147 (15%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
+P D +GHGTH AS AG G + G G AP A+L K + +
Sbjct: 173 TPYDDNGHGTHVASIAAGT--------GAASNGKYKGMAPGAKLVGIKVL-----NGQGS 219
Query: 277 GNTCFEADMLAAIDDAIRD----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
G+ +D++ +D A+++ G+ V+++S+G++Q + D ++ NA ++V
Sbjct: 220 GSI---SDIINGVDWAVQNKDKYGIKVINLSLGSSQS-SDGTDSLSQAVNNAWDAGLVVV 275
Query: 333 CSAGNSGPAPSSLSN--LAPWLITVGA 357
+AGNSGP ++ + A +ITVGA
Sbjct: 276 VAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 421 VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDA 479
VKGKI L RG K K+AG VG+++ ++ G + +PA + D
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG 347
Query: 480 IKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNIL 539
+ + + K T A K VL T ++ F+S G A D I KPDI APG +IL
Sbjct: 348 LLLKDNSKKTITFNATPK----VLPTASDTKLSRFSSWGLTA-DGNI-KPDIAAPGQDIL 401
Query: 540 AAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHV 573
++ + KY SGTSMS P V
Sbjct: 402 SSVANN-------------KYAKLSGTSMSAPLV 422
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY +SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL-----PGN--------KYGAYSGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY +SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL-----PGN--------KYGAYSGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY +SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYSGTXMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY +SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYSGTXMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A F+S GP + D+ APG++I + KY SGTSM+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTSMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
HV HP+W++ +RS+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAKSGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTXMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTXMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A F+S GP + D+ APG++I + KY SGT+M+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTAMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
HV HP+W++ +RS+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL-----PGN--------KYGAKSGTSMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I S L +K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL-----PGN--------KYGAKSGTSMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL-----PGN--------KYGAKSGTSMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I+ S L +K Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTAMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I+ S L +K Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTAMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAKSGTXMASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I +++ P KY ++GTS + P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN--------KYGAYNGTSXASP 225
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I WS + P KY SGT M+ P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSI---WS--TLPGN--------KYGAKSGTXMASP 213
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP + D+ APG++I + P KY SGT M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL-----PGN--------KYGAKSGTXMASP 216
Query: 572 HVXXXXXXXXXIHPDWSSAAIRSALMTT 599
HV HP+W++ +RS+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGASGS----- 99
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 100 ---GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGASGG----- 99
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 100 ---GSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A + + ++
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGADGRGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG + S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGASSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGAS------- 97
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 98 -GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GTSM+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTAWMKNNKAL 608
IR+ L TA N L
Sbjct: 238 VQIRNHLKNTATGLGNTNL 256
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGASGS----- 99
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 100 ---GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
D+ APG++I +++ P Y ++GTSM+ PHV HP W++
Sbjct: 197 DVMAPGVSI-----QSTLPGG--------TYGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 590 AAIRSALMTTA 600
A +R L +TA
Sbjct: 244 AQVRDRLESTA 254
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 511 MANFTSRG--PNALDPYILKPD--ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGT 566
+A+F+SRG A D I K D I+APG + + W FD Y SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW----------FDG---GYATISGT 248
Query: 567 SMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 623
SM+ PH P S+ +R L T A + + + + IA+ F F
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDILSGNSAGSGDDIASGFGF 305
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
D S D GHGTH VAG + N GG G G AP A L YK
Sbjct: 62 DNSCTDRQGHGTH----VAGSALAN----GGTGSGV-YGVAPEADLWAYKVL-------- 104
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH----NIL 330
+ + D+ AI A D L+ + N + + I NAV + +L
Sbjct: 105 GDDGSGYADDIAEAIRHA-GDQATALNTKVVINMSLGSSGESSLI--TNAVDYAYDKGVL 161
Query: 331 VACSAGNSGPAPSSL 345
+ +AGNSGP P S+
Sbjct: 162 IIAAAGNSGPKPGSI 176
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A F+SRGP D I KPD+ APG IL+A S +P + KY GTSM+
Sbjct: 202 VAQFSSRGPTK-DGRI-KPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYMGGTSMAT 258
Query: 571 PHV 573
P V
Sbjct: 259 PIV 261
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GT M+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGASGS----- 99
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 100 ---GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GT M+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GT M+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 33/179 (18%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A + N+ G AP A L K A+ + ++
Sbjct: 55 STQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGASGSGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPA----PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
N G P+ +N + VGA + + G G++I+ V N++ +P
Sbjct: 153 NEGAGSIDYPARYAN----AMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 519 PNALDPYIL--KPDITAPGLNILAAWSEASSP----SKLAFDKRIVKYTIFSGTSMSCPH 572
P +P+++ DIT P +++ A A S ++ Y ++GTSM+ PH
Sbjct: 315 PGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPH 374
Query: 573 VXXXXXXXXXIHPDWSSAAIRSALMTTA 600
V HP+ S++ +R+AL TA
Sbjct: 375 VSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG+N+ + + ++ Y +GT M+ PHV +P WS+
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 590 AAIRSALMTTA 600
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A + N+ G AP A L K A+ + ++
Sbjct: 55 STQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGASGSGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
D+ APG++I +++ P Y ++GT M+ PHV HP W++
Sbjct: 197 DVMAPGVSI-----QSTLPGG--------TYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 590 AAIRSALMTTAWMKNNK 606
A +R L +TA N
Sbjct: 244 AQVRDRLESTATYLGNS 260
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 492 PTAIIKQARTVLHTQPAPFMANFTSRG--PNALDPYILKPDI--TAPGLNILAAWSEASS 547
P AI A + +A+++SRG A D I + DI +APG ++ + W
Sbjct: 184 PNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG- 242
Query: 548 PSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y SGTSM+ PHV +P S+ +RS L A
Sbjct: 243 ------------YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G+ + N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGS----SANN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
D+ APG++I +++ P Y ++GT M+ PHV HP W++
Sbjct: 197 DVMAPGVSI-----QSTLPGG--------TYGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 590 AAIRSALMTTAWMKNNK 606
A +R L +TA N
Sbjct: 244 AQVRDRLESTATYLGNS 260
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 492 PTAIIKQARTVLHTQPAPFMANFTSRG--PNALDPYILKPDI--TAPGLNILAAWSEASS 547
P AI A + +A+++SRG A D I + DI +APG ++ + W
Sbjct: 184 PNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG- 242
Query: 548 PSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y SGT M+ PHV +P S+ +RS L A
Sbjct: 243 ------------YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G+ + N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGS----SANN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GTSM+ PHV HP+ S++ +R+ L +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A F+SRGP D I KPD+ APG IL+A S +P + KY GTS +
Sbjct: 202 VAQFSSRGPTK-DGRI-KPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYXGGTSXAT 258
Query: 571 PHV 573
P V
Sbjct: 259 PIV 261
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 41/215 (19%)
Query: 175 GICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAG 234
GI TG+A SS + K++G ++ G + D +GHGTH A TVA
Sbjct: 29 GIIDTGIA--SSHTDLKVVGGASFVSG-------------ESYNTDGNGHGTHVAGTVA- 72
Query: 235 RRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294
+ N + G AP L K ++ S +A +++ I+ A +
Sbjct: 73 -ALDNTTGVLGV--------APNVSLYAIKVLNSSGSGSYSA--------IVSGIEWATQ 115
Query: 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW--- 351
+G+ V+++S+G + + A I+V +AGNSG + S + P
Sbjct: 116 NGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSGNSGSQNTIGYPAKYD 171
Query: 352 -LITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYN 385
+I VGA +++ +G+ +E++ V+ Y+
Sbjct: 172 SVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYS 206
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
++ APG+++ + + PS YT +GTSM+ PHV +P S+
Sbjct: 196 EVMAPGVSVYSTY-----PSN--------TYTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 590 AAIRSALMTTA 600
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 110
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 111 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 161
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA-----PWLITVGAGSLD 361
D + AV +N+ V C+AGN G + A +I VGA D
Sbjct: 162 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD 212
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 560 YTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
Y +GT M+ PHV HP+ S++ +R+ L +TA
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 53 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 95
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 96 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 153
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 154 AGNNGCDCLHVPAALPAVLAVGA 176
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 421 VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDA 479
VKGKI L RG K + K+AG VG+++ ++ G + PA + D
Sbjct: 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG 338
Query: 480 IKIHEYIKSTNNPTAIIKQART--VLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 537
+ + + NP I T VL T ++ F+S G A D I KPDI APG +
Sbjct: 339 LLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA-DGNI-KPDIAAPGQD 390
Query: 538 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHV 573
IL++ + KY SGTS S P V
Sbjct: 391 ILSSVANN-------------KYAKLSGTSXSAPLV 413
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 43 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 92
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 93 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 143
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA-----PWLITVGAGSLD 361
D + AV +N+ V C+AGN G + A +I VGA D
Sbjct: 144 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD 194
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 62 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 104
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 105 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 162
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 163 AGNNGCDCLHVPAALPAVLAVGA 185
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 43 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 85
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 86 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 143
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 144 AGNNGCDCLHVPAALPAVLAVGA 166
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 25/160 (15%)
Query: 292 AIRDGVHVLSISIGTNQPFAFNRDGIAIGALN-------AVKHNILVACSAG--NSGPAP 342
+I+ VHVLSI N F +G+ I A+ + A SA + GPA
Sbjct: 212 SIQGNVHVLSIGYKGNSKGPFFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAH 271
Query: 343 SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPG 402
+ L LD+D P V+ G I G V+ Y +K+ + + V+
Sbjct: 272 TEL-------------RLDKDGT-PYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNA 317
Query: 403 VHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGME 441
+ E+++ G + P + G ++ ++GSG F+ G+E
Sbjct: 318 LKPLESSE-FEGEIRPVRTAGNYIIPVQGSGTFEKIDGLE 356
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSS 589
DI APG +I ++W ++S + SGTSM+ PHV +P+ S
Sbjct: 198 DIYAPGSSITSSWYTSNSATN-----------TISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 590 AAIRSALMTTA 600
A + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 176 ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGR 235
+ TGV + + K+I KG++ + ++D P D++ HGTH A +A
Sbjct: 37 VIDTGVDYTHPDLDGKVI------KGYDFV-------DNDYDPMDLNNHGTHVAG-IAAA 82
Query: 236 RVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295
NA+ G AP R+ +A + T +D+ AI A
Sbjct: 83 ETNNATGIAGM--------APNTRILAVRAL------DRNGSGTL--SDIADAIIYAADS 126
Query: 296 GVHVLSISIGTN---------QPFAFNRDGIAIGA---------LNAVKHNILVACSAGN 337
G V+++S+G + +A+N+ + + A + ++A A +
Sbjct: 127 GAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD 186
Query: 338 SGPAPSSLSNLAPWLITVGAG 358
+S SN W+ V G
Sbjct: 187 QYDRLASFSNYGTWVDVVAPG 207
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 494 AIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAF 553
A + +A TV T + A+F++ G D+ APG +I +AW + + ++
Sbjct: 168 ARVAEALTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTSDTATQ--- 216
Query: 554 DKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTA 600
+GTSM+ PHV +P + A++ SA++ A
Sbjct: 217 --------TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 142 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 199
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 200 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 251
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 252 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D A D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDPDA-------DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 27/105 (25%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFA 247
++D +P++ +GHGTH A +A N++ G A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAG-IAAAVTNNSTGIAGTA 93
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 27/105 (25%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFA 247
++D +P++ +GHGTH A +A N++ G A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAG-IAAAVTNNSTGIAGTA 93
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 67 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 125 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 173
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 174 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DDA V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DDA---AAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL 522
SY + P + DD I I+ +++ +K HTQ P + ++ RG ++
Sbjct: 152 SYHEEFNPPKEPMKDD-ITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSA 210
Query: 523 DPYILKPDITAPGLNILAAWSEASS 547
PD+ +ILAA+S+A+S
Sbjct: 211 IDASQTPDVVF--ASILAAFSKATS 233
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,360,065
Number of Sequences: 62578
Number of extensions: 1053319
Number of successful extensions: 2467
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2242
Number of HSP's gapped (non-prelim): 164
length of query: 777
length of database: 14,973,337
effective HSP length: 106
effective length of query: 671
effective length of database: 8,340,069
effective search space: 5596186299
effective search space used: 5596186299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)