Query 004047
Match_columns 777
No_of_seqs 437 out of 3125
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 16:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2E-52 4.4E-57 449.5 30.1 307 105-601 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.1E-50 2.5E-55 451.7 22.5 293 134-642 305-620 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 2.9E-49 6.4E-54 412.1 23.9 244 136-604 1-254 (255)
4 cd07478 Peptidases_S8_CspA-lik 100.0 1.5E-49 3.2E-54 444.3 22.7 411 140-626 1-455 (455)
5 cd05562 Peptidases_S53_like Pe 100.0 8.5E-49 1.9E-53 411.5 23.6 271 139-635 1-274 (275)
6 cd07497 Peptidases_S8_14 Pepti 100.0 1E-48 2.2E-53 416.8 23.9 288 142-600 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 6.4E-48 1.4E-52 422.4 28.1 315 135-635 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 6.6E-47 1.4E-51 407.9 26.8 294 134-638 4-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.9E-46 4E-51 392.8 24.7 250 135-606 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 3.7E-45 8.1E-50 391.8 28.0 290 142-633 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 2.9E-45 6.3E-50 389.8 24.5 267 143-601 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2.2E-45 4.8E-50 379.4 22.7 238 145-626 1-239 (239)
13 cd04857 Peptidases_S8_Tripepti 100.0 1.3E-44 2.7E-49 392.0 28.0 223 219-603 182-412 (412)
14 cd07493 Peptidases_S8_9 Peptid 100.0 1.4E-44 3.1E-49 379.8 24.9 247 144-601 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 3.9E-44 8.4E-49 377.0 25.3 247 142-601 1-264 (264)
16 KOG1153 Subtilisin-related pro 100.0 3.7E-44 8.1E-49 371.8 20.5 339 20-601 77-461 (501)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2.7E-43 6E-48 371.2 25.3 258 142-601 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 3.4E-43 7.4E-48 371.7 24.4 264 134-599 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.7E-42 3.6E-47 363.1 24.2 233 135-602 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 7.5E-43 1.6E-47 372.6 20.8 268 146-601 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 5.6E-42 1.2E-46 360.2 25.0 240 134-603 20-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 7E-42 1.5E-46 358.4 24.6 253 144-601 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 9.4E-42 2E-46 363.0 24.7 207 217-599 66-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1E-41 2.2E-46 362.3 23.7 251 134-605 12-287 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 2.1E-41 4.5E-46 362.5 24.5 279 138-601 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-41 2.9E-46 353.5 22.4 241 145-599 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 2.3E-41 5E-46 361.8 22.7 265 138-631 3-296 (297)
28 cd07473 Peptidases_S8_Subtilis 100.0 9.9E-41 2.1E-45 350.7 25.1 250 143-601 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 6.7E-41 1.5E-45 352.1 23.3 248 134-601 6-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 3.4E-40 7.3E-45 340.2 23.4 227 144-599 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2E-40 4.3E-45 342.9 20.1 164 142-359 2-170 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 5.2E-40 1.1E-44 351.9 22.5 255 144-599 1-294 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 7.7E-41 1.7E-45 356.1 15.5 275 146-635 1-282 (282)
34 cd04059 Peptidases_S8_Protein_ 100.0 1E-39 2.2E-44 350.0 20.0 247 134-601 30-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 5.4E-39 1.2E-43 329.4 22.4 222 144-601 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 4.1E-38 9E-43 332.2 21.8 245 141-601 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.2E-37 2.6E-42 331.0 14.6 366 23-636 49-466 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.5E-34 3.2E-39 320.4 22.3 241 222-635 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 9.6E-34 2.1E-38 292.0 14.6 195 218-599 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.1E-30 2.5E-35 270.0 23.6 197 217-599 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 5.5E-24 1.2E-28 244.4 22.8 272 134-635 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 3.7E-21 8E-26 195.4 11.2 155 133-341 151-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.1E-16 2.3E-21 175.5 15.0 102 249-362 81-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.3 2.1E-11 4.5E-16 113.2 13.3 123 368-495 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 2.1E-11 4.7E-16 115.5 11.7 105 411-520 36-141 (143)
46 cd04816 PA_SaNapH_like PA_SaNa 98.9 9.1E-09 2E-13 94.7 9.5 88 408-495 29-121 (122)
47 cd02122 PA_GRAIL_like PA _GRAI 98.9 1.3E-08 2.7E-13 95.2 10.3 90 407-496 43-138 (138)
48 PF05922 Inhibitor_I9: Peptida 98.8 5.8E-09 1.3E-13 88.8 6.6 78 25-108 1-82 (82)
49 cd02127 PA_hPAP21_like PA_hPAP 98.8 1.9E-08 4.2E-13 91.4 10.2 89 408-497 21-117 (118)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.8 1.7E-08 3.8E-13 91.0 9.3 83 407-489 29-115 (120)
51 cd04818 PA_subtilisin_1 PA_sub 98.7 5.2E-08 1.1E-12 89.2 10.1 88 407-495 26-117 (118)
52 cd02126 PA_EDEM3_like PA_EDEM3 98.7 6.3E-08 1.4E-12 89.4 9.6 86 408-494 27-124 (126)
53 PF02225 PA: PA domain; Inter 98.7 2.1E-08 4.6E-13 89.0 6.0 79 408-486 19-101 (101)
54 cd00538 PA PA: Protease-associ 98.7 7.1E-08 1.5E-12 89.3 9.1 89 407-495 29-125 (126)
55 cd02130 PA_ScAPY_like PA_ScAPY 98.7 9.3E-08 2E-12 88.0 9.5 86 409-495 32-121 (122)
56 cd02132 PA_GO-like PA_GO-like: 98.6 1.5E-07 3.2E-12 88.5 9.7 84 408-494 48-137 (139)
57 cd02125 PA_VSR PA_VSR: Proteas 98.6 1.7E-07 3.8E-12 86.3 9.5 88 408-495 22-126 (127)
58 PF06280 DUF1034: Fn3-like dom 98.6 4.9E-07 1.1E-11 81.9 12.2 91 680-773 1-112 (112)
59 cd02124 PA_PoS1_like PA_PoS1_l 98.6 2.6E-07 5.7E-12 85.4 10.0 89 406-495 39-128 (129)
60 cd04817 PA_VapT_like PA_VapT_l 98.6 1.9E-07 4.2E-12 86.8 8.9 75 415-489 49-134 (139)
61 cd04813 PA_1 PA_1: Protease-as 98.5 3.5E-07 7.6E-12 83.0 9.0 81 407-489 26-112 (117)
62 cd02123 PA_C_RZF_like PA_C-RZF 98.5 6.4E-07 1.4E-11 85.6 9.5 84 408-491 50-142 (153)
63 KOG3525 Subtilisin-like propro 98.3 3.4E-06 7.4E-11 93.7 12.0 156 134-342 24-188 (431)
64 COG4934 Predicted protease [Po 98.3 3.9E-06 8.4E-11 100.2 12.6 95 251-357 288-395 (1174)
65 cd04819 PA_2 PA_2: Protease-as 98.2 1.8E-05 3.9E-10 73.3 12.2 78 415-492 37-123 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.6 0.0002 4.3E-09 66.9 8.1 79 416-494 33-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.1 0.0012 2.7E-08 64.2 6.5 71 418-488 51-155 (183)
68 KOG2442 Uncharacterized conser 96.8 0.0038 8.3E-08 67.8 8.7 82 418-499 91-178 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.6 0.0046 1E-07 57.8 6.3 63 388-457 20-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.3 0.0064 1.4E-07 56.6 5.1 50 408-457 35-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.1 0.0087 1.9E-07 56.7 5.3 51 408-458 33-101 (151)
72 cd02121 PA_GCPII_like PA_GCPII 95.9 0.014 3E-07 58.9 5.9 39 418-456 67-105 (220)
73 PF10633 NPCBM_assoc: NPCBM-as 95.8 0.063 1.4E-06 44.9 8.5 64 687-754 5-69 (78)
74 PF14874 PapD-like: Flagellar- 95.6 0.47 1E-05 41.8 13.9 82 687-776 20-101 (102)
75 cd02131 PA_hNAALADL2_like PA_h 95.3 0.021 4.6E-07 53.4 4.2 39 419-457 37-75 (153)
76 KOG3920 Uncharacterized conser 94.6 0.039 8.5E-07 51.0 4.0 87 407-494 73-169 (193)
77 KOG4628 Predicted E3 ubiquitin 94.3 0.097 2.1E-06 55.9 6.8 81 409-489 63-150 (348)
78 PF11614 FixG_C: IG-like fold 92.5 3.3 7.1E-05 37.6 13.0 54 689-743 33-86 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 87.7 0.84 1.8E-05 43.7 4.8 43 414-456 41-102 (157)
80 COG1470 Predicted membrane pro 87.2 4.1 8.9E-05 45.0 10.1 71 687-762 397-468 (513)
81 KOG1114 Tripeptidyl peptidase 81.8 1 2.2E-05 53.3 2.9 24 139-162 77-100 (1304)
82 PF06030 DUF916: Bacterial pro 79.5 18 0.00039 33.1 9.7 56 686-742 26-104 (121)
83 PF00345 PapD_N: Pili and flag 73.7 27 0.00059 31.6 9.4 52 688-741 15-73 (122)
84 TIGR02745 ccoG_rdxA_fixG cytoc 72.0 40 0.00086 38.0 11.8 55 688-743 347-401 (434)
85 COG1470 Predicted membrane pro 68.6 52 0.0011 36.8 11.3 55 687-742 284-344 (513)
86 PF00635 Motile_Sperm: MSP (Ma 62.7 38 0.00082 29.7 7.8 53 687-742 18-70 (109)
87 PF03032 Brevenin: Brevenin/es 60.2 4.7 0.0001 29.9 1.1 23 1-23 3-25 (46)
88 PF07718 Coatamer_beta_C: Coat 53.9 1.2E+02 0.0027 28.3 9.5 67 689-762 71-138 (140)
89 PLN03080 Probable beta-xylosid 48.2 71 0.0015 39.1 9.1 80 688-771 685-778 (779)
90 PF05506 DUF756: Domain of unk 47.4 1.2E+02 0.0026 25.8 8.0 47 689-740 20-66 (89)
91 PF07610 DUF1573: Protein of u 46.4 77 0.0017 23.2 5.7 44 693-739 2-45 (45)
92 PF02402 Lysis_col: Lysis prot 45.7 7.5 0.00016 28.1 0.2 21 1-21 1-21 (46)
93 KOG2018 Predicted dinucleotide 45.3 26 0.00057 36.9 4.1 84 251-337 137-246 (430)
94 PRK15098 beta-D-glucoside gluc 43.7 60 0.0013 39.7 7.6 53 687-742 667-728 (765)
95 PF00927 Transglut_C: Transglu 41.7 2.4E+02 0.0052 24.7 9.5 56 685-742 13-77 (107)
96 PF08260 Kinin: Insect kinin p 37.8 15 0.00032 16.7 0.4 6 513-518 3-8 (8)
97 PF05753 TRAP_beta: Translocon 36.1 2.4E+02 0.0052 27.7 9.1 55 687-742 38-98 (181)
98 smart00237 Calx_beta Domains i 35.1 2.7E+02 0.0058 23.7 8.3 63 677-741 8-75 (90)
99 PF07705 CARDB: CARDB; InterP 35.1 1.9E+02 0.0041 24.5 7.6 52 686-741 18-71 (101)
100 PF02845 CUE: CUE domain; Int 33.2 45 0.00098 24.0 2.7 24 577-600 5-28 (42)
101 PRK15019 CsdA-binding activato 30.0 52 0.0011 31.2 3.2 32 562-594 78-109 (147)
102 cd00407 Urease_beta Urease bet 29.6 1E+02 0.0022 27.0 4.6 50 687-738 18-82 (101)
103 PF12690 BsuPI: Intracellular 28.9 2.6E+02 0.0057 23.5 7.0 52 689-741 2-70 (82)
104 TIGR03391 FeS_syn_CsdE cystein 28.7 57 0.0012 30.6 3.2 33 562-595 73-105 (138)
105 PRK13203 ureB urease subunit b 28.4 1E+02 0.0022 27.0 4.3 50 687-738 18-82 (102)
106 PF03160 Calx-beta: Calx-beta 27.8 2.6E+02 0.0056 24.0 7.2 66 675-741 15-85 (100)
107 TIGR00192 urease_beta urease, 27.5 1.1E+02 0.0025 26.7 4.5 51 687-738 18-82 (101)
108 smart00635 BID_2 Bacterial Ig- 27.3 1.8E+02 0.0038 24.2 5.7 39 716-764 4-42 (81)
109 PRK13202 ureB urease subunit b 26.7 1.2E+02 0.0027 26.6 4.6 49 689-738 21-83 (104)
110 PF02601 Exonuc_VII_L: Exonucl 26.4 1.9E+02 0.004 31.2 7.2 73 255-339 39-118 (319)
111 PF13940 Ldr_toxin: Toxin Ldr, 26.3 54 0.0012 22.4 1.8 13 568-580 14-26 (35)
112 cd08523 Reeler_cohesin_like Do 25.3 3.4E+02 0.0074 24.9 7.5 20 723-742 74-93 (124)
113 PF00553 CBM_2: Cellulose bind 25.0 4.4E+02 0.0096 22.9 8.1 32 687-718 13-45 (101)
114 PF01345 DUF11: Domain of unkn 24.9 1.8E+02 0.0039 23.6 5.3 31 687-717 41-72 (76)
115 PRK09296 cysteine desufuration 24.9 73 0.0016 29.8 3.2 32 562-594 68-99 (138)
116 PF00699 Urease_beta: Urease b 24.7 97 0.0021 27.0 3.6 50 687-738 17-81 (100)
117 TIGR00845 caca sodium/calcium 24.6 6.3E+02 0.014 31.5 11.6 65 675-742 404-475 (928)
118 COG2166 sufE Cysteine desulfur 24.1 72 0.0016 30.0 2.9 25 570-594 80-104 (144)
119 PF02657 SufE: Fe-S metabolism 24.1 81 0.0018 28.9 3.3 33 562-595 59-91 (125)
120 PF08821 CGGC: CGGC domain; I 24.1 2.3E+02 0.0051 25.2 6.1 44 252-306 31-75 (107)
121 PF08139 LPAM_1: Prokaryotic m 23.6 50 0.0011 21.1 1.2 15 1-15 7-21 (25)
122 PRK13205 ureB urease subunit b 23.1 1.4E+02 0.0031 28.1 4.5 50 687-738 18-82 (162)
123 PF04255 DUF433: Protein of un 22.6 81 0.0018 24.3 2.5 40 558-597 9-54 (56)
124 smart00546 CUE Domain that may 22.4 1.3E+02 0.0028 21.6 3.4 25 576-600 5-29 (43)
125 PF14673 DUF4459: Domain of un 21.6 43 0.00093 29.3 0.9 19 1-19 1-19 (159)
126 PRK13201 ureB urease subunit b 21.6 1.6E+02 0.0035 27.1 4.5 50 687-738 18-82 (136)
127 PRK15308 putative fimbrial pro 21.1 3.6E+02 0.0079 27.7 7.6 53 688-741 32-100 (234)
128 PF13598 DUF4139: Domain of un 21.1 4.4E+02 0.0095 28.1 8.9 23 688-710 243-265 (317)
129 PF04744 Monooxygenase_B: Mono 20.7 2.9E+02 0.0063 30.1 7.0 53 687-741 263-335 (381)
130 COG1570 XseA Exonuclease VII, 20.6 2.1E+02 0.0046 32.1 6.2 74 254-339 159-236 (440)
131 PF11777 DUF3316: Protein of u 20.0 64 0.0014 29.0 1.7 19 1-19 1-19 (114)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-52 Score=449.51 Aligned_cols=307 Identities=56% Similarity=0.930 Sum_probs=257.1
Q ss_pred cccccCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccc
Q 004047 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184 (777)
Q Consensus 105 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~ 184 (777)
++|+++++++++|+... |. ..+|..+++|+||+|||||||||++||+|++....+++..|.+.|..+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 46889999999999865 11 0367889999999999999999999999999988899999999999988887
Q ss_pred cccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEE
Q 004047 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 264 (777)
Q Consensus 185 ~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~k 264 (777)
...|++|+++.++|.+++..... .....+..++.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 77899999999999887554322 12233456788999999999999999876554444 55566789999999999999
Q ss_pred eecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC
Q 004047 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344 (777)
Q Consensus 265 v~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~ 344 (777)
+++.. + .+..+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+...+
T Consensus 150 v~~~~--~------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPD--G------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCC--C------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 99874 3 4789999999999999999999999998332 4566778888889999999999999999987777
Q ss_pred CcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccce
Q 004047 345 LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGK 424 (777)
Q Consensus 345 ~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ 424 (777)
..+..||+++||+++
T Consensus 221 ~~~~~~~vi~Vga~~----------------------------------------------------------------- 235 (307)
T cd04852 221 VPNVAPWVTTVAAST----------------------------------------------------------------- 235 (307)
T ss_pred ccCCCCCeEEEEecc-----------------------------------------------------------------
Confidence 778889999999621
Q ss_pred EEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEee
Q 004047 425 IVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH 504 (777)
Q Consensus 425 ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 504 (777)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC
Q 004047 505 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 584 (777)
Q Consensus 505 ~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 584 (777)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++
T Consensus 236 ----------------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~ 290 (307)
T cd04852 236 ----------------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAH 290 (307)
T ss_pred ----------------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC
Confidence 477999999999999875211 1122233689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccc
Q 004047 585 PDWSSAAIRSALMTTAW 601 (777)
Q Consensus 585 P~~s~~~ik~~L~~TA~ 601 (777)
|.|+|.+||++|++||+
T Consensus 291 p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 291 PDWSPAAIKSALMTTAY 307 (307)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.1e-50 Score=451.66 Aligned_cols=293 Identities=20% Similarity=0.173 Sum_probs=210.6
Q ss_pred cccc--ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccce---eeeeeecccccccccCC
Q 004047 134 DLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKK---IIGARYYLKGFEQLYGP 208 (777)
Q Consensus 134 ~~~~--~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~k---iig~~~~~~~~~~~~~~ 208 (777)
++|. .+.+|+||+|||||||||++||||.+.-... +....|.- .++. +++. -+.+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDd--D~nG~vdd~~G~nfVd~------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDD--DNNGNVDDEYGANFVNN------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cccc--ccCCcccccccccccCC-------
Confidence 4554 3678999999999999999999998541000 00001100 0000 0111 1122333321
Q ss_pred CCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004047 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (777)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~a 288 (777)
...|.|..||||||||||||... ....+.||||+|+|+++|+++.. | .+..+++++|
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gn---------N~~Gi~GVAP~AkLi~vKVld~~--G------~G~~sdI~~A 427 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGN---------NNIGIVGVDKRSKLIICKALDSH--K------LGRLGDMFKC 427 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhcccc---------CCCceeeeecccccceEEEecCC--C------CccHHHHHHH
Confidence 23568899999999999999732 22235799999999999999876 4 4688999999
Q ss_pred HHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------CcC----CCc
Q 004047 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------LSN----LAP 350 (777)
Q Consensus 289 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~--------------~~~----~ap 350 (777)
|+||++.|++|||||||+. .....+..++.+|.++|++||+||||+|+.... ++. ..|
T Consensus 428 I~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 9999999999999999983 234567778889999999999999999854221 111 135
Q ss_pred ceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEec
Q 004047 351 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 430 (777)
Q Consensus 351 ~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~ 430 (777)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 6777776532110
Q ss_pred CCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCc
Q 004047 431 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPF 510 (777)
Q Consensus 431 g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 510 (777)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0013
Q ss_pred cccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHH
Q 004047 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 590 (777)
Q Consensus 511 ~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~ 590 (777)
++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|+++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456666532 34999999999999987 789999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeC
Q 004047 591 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDA 642 (777)
Q Consensus 591 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~ 642 (777)
+|+++|++||.+++.. .+...++|+||+++|++.++-+..
T Consensus 581 qV~~iL~~TA~~l~~~------------~n~~~wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 581 EVIRILKESIVQLPSL------------KNKVKWGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred HHHHHHHHhCccCCCC------------CCccccCcEEcHHHHHHHHHhccc
Confidence 9999999999876431 111222389999999997665433
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.9e-49 Score=412.09 Aligned_cols=244 Identities=27% Similarity=0.336 Sum_probs=198.9
Q ss_pred ccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCC
Q 004047 136 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 215 (777)
Q Consensus 136 ~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 215 (777)
|..+++|+||+|||||||||.+||+|.+. +...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC--------------C
Confidence 78899999999999999999999999631 00011111 1
Q ss_pred CCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC
Q 004047 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295 (777)
Q Consensus 216 ~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~ 295 (777)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+. + .+..+.++++|+||++.
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE------------QCLGFAPDAEIYIFRVFTNN--Q------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC------------CceeECCCCEEEEEEeecCC--C------CchHHHHHHHHHhhhhc
Confidence 2355788999999999998731 24799999999999999876 3 35678899999999999
Q ss_pred CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcC--CCcceeeeccCccccccccceEeCCC
Q 004047 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
++||||||||... +...++..++.++.++|++||+||||+|+...+... ..+++|+|||++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 9999999999832 334566667788889999999999999986555443 3478999997532
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCC
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKP 529 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~d~~~KP 529 (777)
.+.++.|||+|++.. ..+++||
T Consensus 163 ------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~ 188 (255)
T cd07479 163 ------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKP 188 (255)
T ss_pred ------------------------------------------------------CCccccccCCCCCcccccCCCCCcCc
Confidence 247789999997531 2478899
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC----CCCHHHHHHHHHhcccccC
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~s~~~ik~~L~~TA~~~~ 604 (777)
||.|||.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 189 di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 189 DIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999988765 6789999999999999999999999998 7899999999999999874
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.5e-49 Score=444.34 Aligned_cols=411 Identities=24% Similarity=0.235 Sum_probs=245.9
Q ss_pred CCCCceEEEEeecCCCCCCCCCCC-CCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004047 140 RYGQDVIVGLVDNGVWPESKSFSD-EGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (777)
Q Consensus 140 ~~G~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 218 (777)
++|+||+|||||||||+.||+|++ ++.+++...|++....+.. .....+...+.............+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 589999999999999999999985 4677888999887654321 111222222221100000000011223456
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCcc--CCCCCCHHHHHHHHHHHHhC-
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA--AGNTCFEADMLAAIDDAIRD- 295 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~--~~~~~~~~~i~~ai~~a~~~- 295 (777)
.|..||||||||||||+.. .+..+.||||+|+|+++|++......... ....+..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~---------~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGD---------NNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCchHHHHHHHhcCCC---------CCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 7899999999999999843 23446799999999999999876210000 00126789999999999874
Q ss_pred ----CceEEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCCCcCC---C----cceeeeccCccccc
Q 004047 296 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNL---A----PWLITVGAGSLDRD 363 (777)
Q Consensus 296 ----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~~~~~---a----p~vitVgAs~~~~~ 363 (777)
.++|||||||.+...+...++++.+++.+..+ |++||+||||+|....+.... . .--+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 57899999999666677788898888887776 999999999999754433321 0 0113333211 11
Q ss_pred cccceEeCCCcEEE-------eeeeccCCC----CcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCC
Q 004047 364 FVGPVVLGTGMEII-------GKTVTPYNL----KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432 (777)
Q Consensus 364 ~~~~~~~~~~~~~~-------g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~ 432 (777)
+..++....-..+. |+....... ...+.+++. ..++.+..+..
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~--------------------------~t~i~v~y~~~ 277 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE--------------------------GTTVYVYYYLP 277 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC--------------------------CeEEEEEEcCC
Confidence 11011110000000 000000000 000011110 11111111100
Q ss_pred c------chhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEe----ceEE
Q 004047 433 G------FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ----ARTV 502 (777)
Q Consensus 433 ~------~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~ 502 (777)
. ...-+.. -...|..-+.++.... .......|+|...+...+.. ++......+.++.. ..++
T Consensus 278 ~~~~g~~~i~i~~~-~~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~----f~~~~~~~tit~Pa~~~~vitV 349 (455)
T cd07478 278 EPYTGDQLIFIRFK-NIKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTR----FLEPDPYTTLTIPGTARSVITV 349 (455)
T ss_pred CCCCCCeEEEEEcc-CCCccceEEEEEeccC---CCceEEEEecCcCcCCCCCE----eecCCCCceEecCCCCCCcEEE
Confidence 0 0000011 1223444444444321 11112345554433322221 22222333333221 1233
Q ss_pred eecC-CCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHH
Q 004047 503 LHTQ-PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 581 (777)
Q Consensus 503 ~~~~-~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 581 (777)
.... ..+.++.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 350 ga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~ 414 (455)
T cd07478 350 GAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLL 414 (455)
T ss_pred EEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 3322 345699999999998 699999999999999999986 789999999999999999999999
Q ss_pred HHC------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeee
Q 004047 582 AIH------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 626 (777)
Q Consensus 582 q~~------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 626 (777)
|++ |.+++++||++|++||+++.. ..+++++||||
T Consensus 415 ~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 415 QWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HhchhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 985 557999999999999998752 35688999998
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=8.5e-49 Score=411.45 Aligned_cols=271 Identities=26% Similarity=0.219 Sum_probs=202.0
Q ss_pred cCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004047 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (777)
Q Consensus 139 g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 218 (777)
|++|+||+|||||||||..||++.+..... +.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc-------------cCCC
Confidence 579999999999999999998653221111 1111111110 1235
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 298 (777)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|+++.|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 578899999999994 89999999998862 3578899999999999999
Q ss_pred EEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCC-CcCCCcceeeeccCccccccccceEeCCCcEE
Q 004047 299 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 376 (777)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 376 (777)
|||||||......+....+..+++++.++ |++||+||||+|+.... .+...|++|+|||++...........+
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----- 167 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----- 167 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----
Confidence 99999998432222345677888888887 99999999999975332 234569999999976533110000000
Q ss_pred EeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCC
Q 004047 377 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 377 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 456 (777)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCC
Q 004047 457 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 536 (777)
Q Consensus 457 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~ 536 (777)
........+.||++||+. ++++||||+|||+
T Consensus 168 -----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg 198 (275)
T cd05562 168 -----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDG 198 (275)
T ss_pred -----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCc
Confidence 000012345678899987 5889999999975
Q ss_pred -cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004047 537 -NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 615 (777)
Q Consensus 537 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 615 (777)
++.++... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 199 ~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--------- 256 (275)
T cd05562 199 VNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP--------- 256 (275)
T ss_pred ccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC---------
Confidence 44555443 6899999999999999999999999999999999999999999987532
Q ss_pred CCCCCCceeeeccCccccCC
Q 004047 616 SIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 616 ~~~~~~~~G~G~vn~~~Al~ 635 (777)
..+..||||+||+.+|++
T Consensus 257 --g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 --GYDNASGSGLVDADRAVA 274 (275)
T ss_pred --CCCCCcCcCcccHHHHhh
Confidence 356789999999999986
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-48 Score=416.80 Aligned_cols=288 Identities=26% Similarity=0.259 Sum_probs=190.2
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|||||||||++||||.++... .|. ..|+ +...++.+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 89999999999999999999643210 000 0000 00011111111111 11346789
Q ss_pred CCCccchhhccccCCCCCCCccCCc-CCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHH-------HHHHH-
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDA- 292 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~-~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~-------ai~~a- 292 (777)
.||||||||||||......+.+ ++ ....+.||||+|+|+.+|++... + .+....+.. +++|+
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~--~------~~~~~~~~~g~~~~~~~~~~~~ 126 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFG--D------VIYAWLWTAGFDPVDRKLSWIY 126 (311)
T ss_pred cccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecC--C------cchhhhhhhccchhhhhhhhhh
Confidence 9999999999999853222111 11 12357899999999999999754 2 122222332 34443
Q ss_pred -HhCCceEEEeecCCCCCC----CCCccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCCcC--CCcceeeeccCcccccc
Q 004047 293 -IRDGVHVLSISIGTNQPF----AFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDF 364 (777)
Q Consensus 293 -~~~gvdVIn~SlG~~~~~----~~~~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~ 364 (777)
.+++++|||||||..... ....+..+...+. +.++|+++|+||||+|+...+... .++++|+|||++.....
T Consensus 127 ~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~ 206 (311)
T cd07497 127 TGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR 206 (311)
T ss_pred ccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc
Confidence 368999999999983221 1112233333333 248999999999999987555554 45899999997642211
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
+... +.
T Consensus 207 ~~~~-----------------------~~--------------------------------------------------- 212 (311)
T cd07497 207 PFYL-----------------------FG--------------------------------------------------- 212 (311)
T ss_pred chhh-----------------------hc---------------------------------------------------
Confidence 0000 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
......+.++.||||||+. +
T Consensus 213 ----------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~ 232 (311)
T cd07497 213 ----------------------------------------------------------YLPGGSGDVVSWSSRGPSI--A 232 (311)
T ss_pred ----------------------------------------------------------cccCCCCCccccccCCCCc--c
Confidence 0001245789999999988 5
Q ss_pred CCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC------CCCHHHHHHHHHh
Q 004047 525 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALMT 598 (777)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~s~~~ik~~L~~ 598 (777)
+++||||+|||++|+++.+....... ......|..|+|||||||||||++|||+|++| .++|++||++|++
T Consensus 233 g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 233 GDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred cCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 99999999999999999875322000 11124799999999999999999999999986 6899999999999
Q ss_pred cc
Q 004047 599 TA 600 (777)
Q Consensus 599 TA 600 (777)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6.4e-48 Score=422.36 Aligned_cols=315 Identities=29% Similarity=0.371 Sum_probs=234.6
Q ss_pred cccccC-CCCceEEEEeecCCCCCCCCCCCCCCCCCCC-----CcccceecCCccccccccceeeeeeecccccccccCC
Q 004047 135 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 208 (777)
Q Consensus 135 ~~~~g~-~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 208 (777)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++.+++|.+...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 73 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNND----- 73 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCC-----
Confidence 688877 9999999999999999999998654322111 111111111 12245677888888876521
Q ss_pred CCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004047 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (777)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~a 288 (777)
+.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.....+ .+....+++|
T Consensus 74 -----~~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~------~~~~~~~~~a 136 (346)
T cd07475 74 -----DILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG------STYDDAYAKA 136 (346)
T ss_pred -----ccCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC------CCCHHHHHHH
Confidence 111245788999999999999843211 12356899999999999999741113 4788899999
Q ss_pred HHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc----------------CCCcce
Q 004047 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------------NLAPWL 352 (777)
Q Consensus 289 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~----------------~~ap~v 352 (777)
++++++.|++|||||||...........+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999995443355667788888999999999999999985532211 123556
Q ss_pred eeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCC
Q 004047 353 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432 (777)
Q Consensus 353 itVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~ 432 (777)
|+||++...
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 666654210
Q ss_pred cchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc
Q 004047 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 512 (777)
Q Consensus 433 ~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 512 (777)
......+.++
T Consensus 226 ----------------------------------------------------------------------~~~~~~~~~~ 235 (346)
T cd07475 226 ----------------------------------------------------------------------VPNPNGGQMS 235 (346)
T ss_pred ----------------------------------------------------------------------cCCCCCCccC
Confidence 0011245788
Q ss_pred cccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCC
Q 004047 513 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWS 588 (777)
Q Consensus 513 ~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s 588 (777)
.||+|||+. +.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|+
T Consensus 236 ~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~ 300 (346)
T cd07475 236 GFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLS 300 (346)
T ss_pred CCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999988 589999999999999999876 68999999999999999999999998 78999
Q ss_pred HHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 589 SAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 589 ~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
+.+ ||.+|++||.+.... ...+.++.+.++|+|+||+.+||+
T Consensus 301 ~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 301 GEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 876 788999999853211 123466788899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-47 Score=407.87 Aligned_cols=294 Identities=29% Similarity=0.332 Sum_probs=227.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|+.+++|+||+|||||+|||++||+|.+.-. ...++.+.++|..+.... .+...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~~---~~~~~ 59 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYDG---TNPPV 59 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCccccc---ccCCC
Confidence 789999999999999999999999999975311 011233334443221100 00112
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+...+.|..||||||||||+|...+ ..+.||||+|+|+.+|++... + ....+.++++|++|+
T Consensus 60 ~~~~~~d~~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (312)
T cd07489 60 PDDDPMDCQGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCS--G------STTEDTIIAAFLRAY 121 (312)
T ss_pred CCCCCCCCCCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCC--C------CCCHHHHHHHHHHHH
Confidence 2345677899999999999998422 245899999999999999865 4 467888999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CcCCCcceeeeccCccccccccceEe
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+++++|||||||... .+..+.+...+.++.++|+++|+||||+|..... .+...+++|+||+++
T Consensus 122 ~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 122 EDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred hcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 999999999999832 3445777778888999999999999999865322 223457888888621
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
+.||+|||+. +...|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4789999987 4889999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-CCCCHHHHHHHHHhcccccCCCCCc
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
|+|||++|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999988732 359999999999999999999999999 9999999999999999987653211
Q ss_pred ccCCCCCCCCCCceeeeccCccccCCCCc
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAADPGL 638 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 638 (777)
-. ....+++.++|+|+||+.+|++..-
T Consensus 275 ~~--~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 275 SA--LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred cc--ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 00 0114677899999999999999533
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.9e-46 Score=392.77 Aligned_cols=250 Identities=27% Similarity=0.304 Sum_probs=203.7
Q ss_pred cccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCC
Q 004047 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (777)
Q Consensus 135 ~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 214 (777)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999975421100 00000 0
Q ss_pred CCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004047 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (777)
Q Consensus 215 ~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 294 (777)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++.....+ ++..++++||+||++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~~-------~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRRG-------CSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCCC-------CCHHHHHHHHHHHHH
Confidence 12345678999999999998731 135799999999999999876322 457899999999999
Q ss_pred CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCc
Q 004047 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 295 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
.|++|||||||...........+..+++.+.++|++||+||||+|.....++...|++|+|||++.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 170 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------- 170 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------
Confidence 999999999998433334456678888899999999999999999776666666799999998542
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.+.++.||+||+.. .||||+||
T Consensus 171 -----------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~Ap 192 (267)
T cd07476 171 -----------------------------------------------------DGLPLKFSNWGADY-----RKKGILAP 192 (267)
T ss_pred -----------------------------------------------------CCCeeeecCCCCCC-----CCceEEec
Confidence 13567899999853 38899999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC----CCHHHHHHHHHhcccccCCC
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTAWMKNNK 606 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~s~~~ik~~L~~TA~~~~~~ 606 (777)
|.+|+++.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 193 G~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 193 GENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 9999999887 68999999999999999999999999887 89999999999999998643
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-45 Score=391.80 Aligned_cols=290 Identities=37% Similarity=0.513 Sum_probs=217.9
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCC-CC-CCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP-LN-ATEDDRSPR 219 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~-~~-~~~~~~~~~ 219 (777)
|+||+|||||+|||++||+|.+.. ..+.+++..++|.......... .. .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 1233455555554321111000 00 000112345
Q ss_pred CCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004047 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (777)
Q Consensus 220 D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 299 (777)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++... + .+...++++||+|+++++++|
T Consensus 60 ~~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKVLGPG--G------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEeecCC--C------CCCHHHHHHHHHHHHHcCCCE
Confidence 6899999999999988422 3346799999999999999854 3 478899999999999999999
Q ss_pred EEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc--CCCcceeeeccCccccccccceEeCCCcEEE
Q 004047 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377 (777)
Q Consensus 300 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~--~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~ 377 (777)
||||||... ....+.+..+++++.++|+++|+||||+|....... ...+++|+||++....
T Consensus 123 in~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------- 185 (295)
T cd07474 123 INLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------- 185 (295)
T ss_pred EEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------
Confidence 999999832 224567788889999999999999999987655543 3458999999854110
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC
Q 004047 378 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 378 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC-CCCCCCCCcCCceeeCCC
Q 004047 458 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG-PNALDPYILKPDITAPGL 536 (777)
Q Consensus 458 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-p~~~~d~~~KPDI~APG~ 536 (777)
.........|+++| ++. +..+||||+|||.
T Consensus 186 -----------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~ 216 (295)
T cd07474 186 -----------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGV 216 (295)
T ss_pred -----------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcC
Confidence 00012344455554 444 5889999999999
Q ss_pred cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCC
Q 004047 537 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 616 (777)
Q Consensus 537 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 616 (777)
+|+++++... ..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. .
T Consensus 217 ~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~ 278 (295)
T cd07474 217 DIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------V 278 (295)
T ss_pred ceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------C
Confidence 9999987631 578999999999999999999999999999999999999999998865421 2
Q ss_pred CCCCCceeeeccCcccc
Q 004047 617 IATPFSFGSGHFRPTKA 633 (777)
Q Consensus 617 ~~~~~~~G~G~vn~~~A 633 (777)
.+++..+|+|+||+.+|
T Consensus 279 ~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 279 VYPVSRQGAGRVDALRA 295 (295)
T ss_pred cCChhccCcceeccccC
Confidence 23567899999999887
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.9e-45 Score=389.81 Aligned_cols=267 Identities=24% Similarity=0.341 Sum_probs=188.9
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceec-CCccccccccc--eeeeeeecccccccc----cCCCC-----
Q 004047 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT-GVAFNSSLCNK--KIIGARYYLKGFEQL----YGPLN----- 210 (777)
Q Consensus 143 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~-g~~f~~~~~n~--kiig~~~~~~~~~~~----~~~~~----- 210 (777)
|+|+|||||||||++||+|++. .|....+. +.+.+. ..|. .-+++++|...+... ..+.+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~-d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDD-DNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccC-CCCCccccccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999864 23222111 000000 0010 113444444321100 00000
Q ss_pred -CCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHH
Q 004047 211 -ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 289 (777)
Q Consensus 211 -~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai 289 (777)
...+...+.+..+|||||||||+|...+ ...+.||||+|+|+.+|++... .....++++||
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n---------~~g~~GvAp~a~i~~~k~~~~g---------~~~~~~i~~Ai 134 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN---------GIGIDGVADNVKIMPLRIVPNG---------DERDKDIANAI 134 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC---------CCceEEECCCCEEEEEEEecCC---------CcCHHHHHHHH
Confidence 0112234557899999999999997422 1225799999999999998643 35678899999
Q ss_pred HHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC---c--------CCCcceeeeccC
Q 004047 290 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL---S--------NLAPWLITVGAG 358 (777)
Q Consensus 290 ~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~---~--------~~ap~vitVgAs 358 (777)
+||++.|++|||||||... ......+..++..+.++|+++|+||||+|...... + ...+++|+|||+
T Consensus 135 ~~a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~ 212 (291)
T cd07483 135 RYAVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGAS 212 (291)
T ss_pred HHHHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeec
Confidence 9999999999999999721 12334566777889999999999999998542211 1 123566777764
Q ss_pred ccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhh
Q 004047 359 SLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSK 438 (777)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~ 438 (777)
+...
T Consensus 213 ~~~~---------------------------------------------------------------------------- 216 (291)
T cd07483 213 SKKY---------------------------------------------------------------------------- 216 (291)
T ss_pred cccC----------------------------------------------------------------------------
Confidence 3211
Q ss_pred hHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC
Q 004047 439 GMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG 518 (777)
Q Consensus 439 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 518 (777)
....++.||++|
T Consensus 217 --------------------------------------------------------------------~~~~~~~~Sn~G 228 (291)
T cd07483 217 --------------------------------------------------------------------ENNLVANFSNYG 228 (291)
T ss_pred --------------------------------------------------------------------CcccccccCCCC
Confidence 012578899999
Q ss_pred CCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHh
Q 004047 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (777)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 598 (777)
+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++
T Consensus 229 ~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ 288 (291)
T cd07483 229 KK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILE 288 (291)
T ss_pred CC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 74 35999999999999876 68999999999999999999999999999999999999999
Q ss_pred ccc
Q 004047 599 TAW 601 (777)
Q Consensus 599 TA~ 601 (777)
||.
T Consensus 289 ta~ 291 (291)
T cd07483 289 SGV 291 (291)
T ss_pred hCC
Confidence 984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-45 Score=379.45 Aligned_cols=238 Identities=27% Similarity=0.316 Sum_probs=191.6
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
|+|||||||||++||+|++.. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996431 11111111 134567899
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeec
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 304 (777)
||||||||+|+... . .||||+|+|+.+|++.....+ ..++..++++||+||++.|++||||||
T Consensus 39 GT~vAgiia~~~~~---------~---~Gvap~a~i~~~~v~~~~~~~-----~~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R---PGLLPGADLYGADVFGRAGGG-----EGASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCCCC---------C---cccCCCCEEEEEEEecCCCCC-----CCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 99999999987311 1 599999999999999865211 136788999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
|.. ....+..++.++.++|++||+||||+|+.. ..++...+++|+|++++.
T Consensus 102 g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------- 153 (239)
T cd05561 102 AGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------- 153 (239)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------
Confidence 972 235677788899999999999999999653 234445688999997532
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.+.++.||++|+.. ||.|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 23677899999976 99999999999876
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCce
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 623 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 623 (777)
. +.|..++|||||||||||++|||+|++| +++++||++|++||+++... ..+..|
T Consensus 182 ~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~ 236 (239)
T cd05561 182 G-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVF 236 (239)
T ss_pred C-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCc
Confidence 6 6899999999999999999999999999 99999999999999987543 356678
Q ss_pred eee
Q 004047 624 GSG 626 (777)
Q Consensus 624 G~G 626 (777)
|||
T Consensus 237 G~G 239 (239)
T cd05561 237 GYG 239 (239)
T ss_pred CCC
Confidence 987
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.3e-44 Score=391.97 Aligned_cols=223 Identities=26% Similarity=0.276 Sum_probs=167.2
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 298 (777)
.|+.+|||||||||||+.. ....+.||||+|+|+++|+++... + ..+....+++||++|++.|++
T Consensus 182 ~d~~gHGThVAGIIAg~~~---------~~~~~~GVAP~A~I~svkv~d~~~-g-----s~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP---------EEPERNGVAPGAQIVSIKIGDTRL-G-----SMETGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC---------CCCceEEecCCCeEEEEEeccCCC-C-----CccchHHHHHHHHHHHHcCCC
Confidence 4778999999999999832 223467999999999999986542 2 013446799999999999999
Q ss_pred EEEeecCCCCCCCCCccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCCcCC---CcceeeeccCccccccccceEeCCCc
Q 004047 299 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~~~~---ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
|||||||....... ...+..++.+ +.++|+++|+||||+|+...++..+ .+++|+|||+.....+.....+
T Consensus 247 VIN~SlG~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~---- 321 (412)
T cd04857 247 LINMSYGEATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL---- 321 (412)
T ss_pred EEEecCCcCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc----
Confidence 99999998432111 1223333443 4578999999999999887776543 4799999996432211000000
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.....+.++.||||||+. |+.+||||+||
T Consensus 322 -------------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~AP 350 (412)
T cd04857 322 -------------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAP 350 (412)
T ss_pred -------------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeC
Confidence 001135789999999998 79999999999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----HCCCCCHHHHHHHHHhccccc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK 603 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~ 603 (777)
|..|.++-.. . ...|..|+|||||||||||++|||++ .+|.|+|.+||++|++||+++
T Consensus 351 G~~I~s~p~~-~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 351 GGAIASVPNW-T----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCcEEEcccC-C----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 9999885221 1 15789999999999999999999985 468999999999999999864
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-44 Score=379.81 Aligned_cols=247 Identities=29% Similarity=0.352 Sum_probs=196.0
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+||||||||+++||+|....+ ..+.++.+.++|.++.. ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952210 12345677777765410 11367889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||+|+. .+.+.||||+|+|+.+|+.....+. ......++.|++|+.+.|++|||||
T Consensus 49 HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~S 111 (261)
T cd07493 49 HGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISSS 111 (261)
T ss_pred chhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999999873 1336899999999999987654222 3456779999999999999999999
Q ss_pred cCCCCCCCC-----------CccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCcCCCcceeeeccCccccccccceE
Q 004047 304 IGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 304 lG~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~---~~~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
||....... ....+..+++.+.++|+++|+||||+|... ...+...+++|+|||.+.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (261)
T cd07493 112 LGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA--------- 182 (261)
T ss_pred CCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc---------
Confidence 998432111 123567788889999999999999999763 233344589999997432
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 23678999999987 689999
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999986544 67899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.9e-44 Score=377.01 Aligned_cols=247 Identities=30% Similarity=0.365 Sum_probs=193.0
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|||||+|||++||+|.+. |.+.... .+...+.+.+ +......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------Cccccccccc----------CCCCCCCCCCC
Confidence 89999999999999999999763 1110000 0000000100 00112356788
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-------
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 294 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~------- 294 (777)
.+|||||||||+|.... +...||||+|+|+.+|++... + +...+++++++++++
T Consensus 52 ~~HGT~vagii~g~~~~----------~~~~GvAp~a~i~~~~~~~~~--~-------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD----------GQQIGVAPGARWIACRALDRN--G-------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCCC----------CCceEECCCCeEEEEEeecCC--C-------CcHHHHHHHHHHHHhccccccc
Confidence 89999999999987321 122799999999999999875 3 678899999999975
Q ss_pred -----CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CcCCCcceeeeccCcccccccc
Q 004047 295 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 295 -----~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~ 366 (777)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998322 23455666778889999999999999865443 2344589999997542
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
.+.++.||++||.. .++
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~--~~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPST--YGR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCC--CCC
Confidence 24678999999987 489
Q ss_pred cCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC--CCHHHHHHHHHhccc
Q 004047 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTAW 601 (777)
Q Consensus 527 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~s~~~ik~~L~~TA~ 601 (777)
+||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999987 68999999999999999999999999999 999999999999985
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-44 Score=371.81 Aligned_cols=339 Identities=23% Similarity=0.326 Sum_probs=257.9
Q ss_pred ccCCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccc------------------eEEEee---eeEeEEEE
Q 004047 20 QKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARAS------------------HLYSYK---HSINGFSA 78 (777)
Q Consensus 20 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------i~~~y~---~~~ng~s~ 78 (777)
......|||.|++.. .+.....|.++++..++.......+ +...|. .+|+|+.-
T Consensus 77 ~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~ 151 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTG 151 (501)
T ss_pred cccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccc
Confidence 345689999999655 4566677888887776543321111 223332 26888888
Q ss_pred EcCHHHHHHhhcCCCeEEEEeCCCCcccccc-----CCcccccccchhhhcc-cCccccccccccccCCCCceEEEEeec
Q 004047 79 VLTPDEAARLSELEEVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQN-WNHFNMGQDLLSKARYGQDVIVGLVDN 152 (777)
Q Consensus 79 ~~~~~~~~~L~~~~~V~~V~~~~~~~~~~~~-----~~s~~~~gl~~~~~~~-~~~~~~~~~~~~~g~~G~GV~VgVIDt 152 (777)
.++.+-+..+++.|-++.++++. ...... .+....|||..+.++. .........+++ -..|+||...|+||
T Consensus 152 ~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 152 YFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDT 228 (501)
T ss_pred ccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEecc
Confidence 99999999999999999999988 655432 2223345776663322 110011113333 34899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhcc
Q 004047 153 GVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTV 232 (777)
Q Consensus 153 Gid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGii 232 (777)
||+.+||+|.++- .| |.|.. ......|++||||||||+|
T Consensus 229 GVni~H~dFegRa------~w-Ga~i~----------------------------------~~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 229 GVNIEHPDFEGRA------IW-GATIP----------------------------------PKDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred cccccccccccce------ec-ccccC----------------------------------CCCcccccCCCcceeeeee
Confidence 9999999998652 23 11110 0124568999999999999
Q ss_pred ccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---------CceEEEee
Q 004047 233 AGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVLSIS 303 (777)
Q Consensus 233 aG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~S 303 (777)
++.. .|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||
T Consensus 268 ~sKt---------------~GvAK~s~lvaVKVl~~d--G------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 268 GSKT---------------FGVAKNSNLVAVKVLRSD--G------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred eccc---------------cccccccceEEEEEeccC--C------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9883 499999999999999999 6 68999999999999985 57899999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc-CCCcceeeeccCccccccccceEeCCCcEEEeeeec
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~-~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 382 (777)
+|+ ...-.+..|++.|.+.||.+++||||+..+.+..+ ..+..+|||||++.
T Consensus 325 lGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------- 377 (501)
T KOG1153|consen 325 LGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------- 377 (501)
T ss_pred cCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------
Confidence 999 34456788889999999999999999997766554 45689999999763
Q ss_pred cCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc
Q 004047 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (777)
Q Consensus 383 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 462 (777)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcc
Q 004047 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (777)
Q Consensus 463 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (777)
.+.+|.||+||++. ||.|||++|+|+|
T Consensus 378 ---------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~ 404 (501)
T KOG1153|consen 378 ---------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSW 404 (501)
T ss_pred ---------------------------------------------ccchhhhcCcccee--------eeecCchhhhhhh
Confidence 35899999999999 9999999999999
Q ss_pred cCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC---------CCHHHHHHHHHhccc
Q 004047 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTAW 601 (777)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~s~~~ik~~L~~TA~ 601 (777)
.+.. ..-.++||||||+|||||++|.++.++|. .+|.++|..+..=..
T Consensus 405 iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 405 IGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8843 46678999999999999999999999883 378888877766544
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-43 Score=371.23 Aligned_cols=258 Identities=30% Similarity=0.427 Sum_probs=203.5
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|+|||+||+++||+|.+... ..+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~---------------------------~~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII---------------------------RFADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc---------------------------ccccccccc----------cCCCCCCCC
Confidence 8999999999999999999975421 000111000 012356677
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----Cc
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 297 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gv 297 (777)
.+|||||||+|+|...+. .+.+.||||+|+|+.+|+++.. + ....+++++||+|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDS--G------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCC--C------CccHHHHHHHHHHHHhhccccCc
Confidence 899999999999984221 3346899999999999999876 4 46788999999999998 99
Q ss_pred eEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--CcCCCcceeeeccCccccccccceEeCCCcE
Q 004047 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--LSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375 (777)
Q Consensus 298 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~--~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~ 375 (777)
+|||||||.........+.+..+++++.++|++||+||||++..... .+...+++|+|||++.+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 99999999854435567888889999999999999999999977653 3344689999998653220
Q ss_pred EEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecC
Q 004047 376 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 455 (777)
Q Consensus 376 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~ 455 (777)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCC
Q 004047 456 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 535 (777)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG 535 (777)
....++.||++||+. ++++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccc
Confidence 012578999999987 599999999999
Q ss_pred CcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 536 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 536 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
.+|+++.+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 203 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999998654210 01112367899999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.4e-43 Score=371.68 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=198.7
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.+.... ..+ ..+...+..... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------------~~~~~~~~~~~~---~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------------DPAVNGYNFVPN---VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------------ccccCCcccccc---cCC
Confidence 3799999999999999999999999999865110 000 000000000000 001
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|..||||||||||+|+..+... .++.. .+.|+||+|+|+.+|++... + .+..+.++++|+|++
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~-~g~i~--~~~gvap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGG-VGGIA--GAGGVAPGVKIMSIQIFAGR--Y------YVGDDAVAAAIVYAA 121 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcc-eeccc--cccccCCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1224567889999999999987432111 11111 23569999999999999876 3 478889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCcCCCcceeeeccCcccccccc
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~ 366 (777)
+.|++|||||||... ...+...+..++..+.++ |++||+||||++......+...+++|+|++++.
T Consensus 122 ~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 122 DNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred HcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999999832 223455667777888888 999999999999776665566689999998542
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
.+.++.||++|+..
T Consensus 195 -------------------------------------------------------------~~~~~~~S~~g~~~----- 208 (273)
T cd07485 195 -------------------------------------------------------------NDNKASFSNYGRWV----- 208 (273)
T ss_pred -------------------------------------------------------------CCCcCccccCCCce-----
Confidence 23667999999976
Q ss_pred cCCceeeCCC-cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC-CCHHHHHHHHHhc
Q 004047 527 LKPDITAPGL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 599 (777)
Q Consensus 527 ~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~s~~~ik~~L~~T 599 (777)
||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 209 ---~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 ---DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 99998775321 11257999999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.7e-42 Score=363.07 Aligned_cols=233 Identities=31% Similarity=0.423 Sum_probs=193.7
Q ss_pred cccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCC
Q 004047 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (777)
Q Consensus 135 ~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 214 (777)
.|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 777899999999999999999999999743 1122222221
Q ss_pred CCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004047 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (777)
Q Consensus 215 ~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 294 (777)
....|..+|||||||||+|+. .||||+|+|+.+|+++.. + ....+.++++++|+++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~--~------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCN--G------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHh
Confidence 125678899999999999862 499999999999999876 4 4678899999999998
Q ss_pred C-----CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCcCCCcceeeeccCccccccccce
Q 004047 295 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 295 ~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~ 368 (777)
. +++|||||||... ...+..++.++.++|+++|+||||+|.... ..+...+++|+||+++.
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~-------- 179 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS-------- 179 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC--------
Confidence 7 5899999999832 456777788899999999999999997653 33445689999998642
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
.+.++.||++||..
T Consensus 180 -----------------------------------------------------------~~~~~~~S~~g~~~------- 193 (255)
T cd04077 180 -----------------------------------------------------------DDARASFSNYGSCV------- 193 (255)
T ss_pred -----------------------------------------------------------CCCccCcccCCCCC-------
Confidence 23578899999986
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccc
Q 004047 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 602 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~ 602 (777)
||+|||.+|.++..... +.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 194 -~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 194 -DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999887421 689999999999999999999999999999999999999999974
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-43 Score=372.56 Aligned_cols=268 Identities=24% Similarity=0.187 Sum_probs=186.9
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCc
Q 004047 146 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 225 (777)
Q Consensus 146 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 225 (777)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999996421 111111110 01156899999
Q ss_pred cchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEe
Q 004047 226 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSI 302 (777)
Q Consensus 226 ThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~ 302 (777)
|||||||++.... .....|+||+|+|+.+|++..... .+.....+++++||+|+++. +++||||
T Consensus 42 T~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~----~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE----NDPELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC----CCccChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 9999999975321 223469999999999999987620 01135778899999999985 3599999
Q ss_pred ecCCCCCCCCC-ccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCC------------cCCCcceeeeccCccccccccce
Q 004047 303 SIGTNQPFAFN-RDGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 303 SlG~~~~~~~~-~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~------------~~~ap~vitVgAs~~~~~~~~~~ 368 (777)
|||........ ...+..++++ +.++|++||+||||+|...... +..++++|+|||++.+.......
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 99994332211 1244445543 5689999999999999775432 22347999999976543210000
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
..
T Consensus 189 ~~------------------------------------------------------------------------------ 190 (291)
T cd04847 189 RY------------------------------------------------------------------------------ 190 (291)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
+.......+.||+|||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 69999
Q ss_pred CceeeCCCcEEEcccCCCCC-----CcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 529 PDITAPGLNILAAWSEASSP-----SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
|||+|||++|.++.+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999865431100 00001112368999999999999999999999999999999999999999985
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.6e-42 Score=360.24 Aligned_cols=240 Identities=30% Similarity=0.371 Sum_probs=199.8
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------------
Confidence 788888 999999999999999999998422 12222333221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. + .+...+++++|++++
T Consensus 61 -~~~~~d~~~HGT~vagii~~~~~~---------~~~~~Giap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 122 (260)
T cd07484 61 -DSDAMDDNGHGTHVAGIIAAATNN---------GTGVAGVAPKAKIMPVKVLDAN--G------SGSLADIANGIRYAA 122 (260)
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCC---------CCceEeECCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 123567889999999999987322 2235799999999999999876 3 467889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
+.+++|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.
T Consensus 123 ~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------- 185 (260)
T cd07484 123 DKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------- 185 (260)
T ss_pred HCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------
Confidence 999999999999832 445677777888999999999999999887777777899999997542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++|+.. |++|
T Consensus 186 ------------------------------------------------------~~~~~~~s~~g~~~--------~~~a 203 (260)
T cd07484 186 ------------------------------------------------------DDKRASFSNYGKWV--------DVSA 203 (260)
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 23667899999876 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccccc
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 603 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~ 603 (777)
||.+|+++.+. +.|..++|||||||+|||++||++|++| +++++||++|++||+++
T Consensus 204 pG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 204 PGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999998876 6899999999999999999999999999 99999999999999875
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-42 Score=358.36 Aligned_cols=253 Identities=29% Similarity=0.334 Sum_probs=186.4
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||+|||++||+|.+. +...+.|.... ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011234567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||+|+.. ++...||||+|+|+.+|++... + +..++++++|+|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG--G-------GSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC--C-------CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 99999999999842 2345799999999999999875 3 678999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeec
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 382 (777)
||..... .+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 9983321 5566655555554 69999999999997755555667999999997643210000000
Q ss_pred cCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc
Q 004047 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (777)
Q Consensus 383 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 462 (777)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcc
Q 004047 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (777)
Q Consensus 463 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (777)
.......++.+|... +...||||.|||.+|+++.
T Consensus 171 ---------------------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 171 ---------------------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred ---------------------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccc
Confidence 001222233444432 4678999999999999965
Q ss_pred cCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
.... ..+.|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 205 ~~~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGAN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCCC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 3211 1268999999999999999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.4e-42 Score=363.00 Aligned_cols=207 Identities=26% Similarity=0.323 Sum_probs=165.5
Q ss_pred CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004047 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 293 (777)
Q Consensus 217 ~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 293 (777)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~i~~a~~~a~~~~ 127 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---------GVGVAGVAWGARILPVRVLGKC--G-------GTLSDIVDGMRWAAGLP 127 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---------CCCceeecCCCeEEEEEEecCC--C-------CcHHHHHHHHHHHhccC
Confidence 3456789999999999998432 2235799999999999999876 4 57889999999998
Q ss_pred -------hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCcCCCcceeeeccCccccccc
Q 004047 294 -------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFV 365 (777)
Q Consensus 294 -------~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~ 365 (777)
.++++|||||||.... ....+..++..+.++|++||+||||+|... ...+...+++|+||+++.
T Consensus 128 ~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 199 (285)
T cd07496 128 VPGVPVNPNPAKVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----- 199 (285)
T ss_pred cCCCcccCCCCeEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----
Confidence 4578999999998322 145677788899999999999999999765 344455689999998542
Q ss_pred cceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhc
Q 004047 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 445 (777)
Q Consensus 366 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~ 445 (777)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004047 446 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 525 (777)
Q Consensus 446 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~ 525 (777)
.+.++.||++|+..
T Consensus 200 --------------------------------------------------------------~~~~~~~S~~g~~v---- 213 (285)
T cd07496 200 --------------------------------------------------------------RGQRASYSNYGPAV---- 213 (285)
T ss_pred --------------------------------------------------------------CCCcccccCCCCCC----
Confidence 24678999999976
Q ss_pred CcCCceeeCCCcEEEcccCCCCCC--cccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 526 ILKPDITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 526 ~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
||+|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ----di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ----DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ----CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998876532110 00111123578999999999999999999999999999999999999876
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-41 Score=362.34 Aligned_cols=251 Identities=25% Similarity=0.299 Sum_probs=181.5
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
++|+.+++|+||+||||||||+..|| |...++ .+.. .+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~-------------------~~~~~------------ 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRV-------------------VLAPG------------ 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------ccee-------------------ecCCC------------
Confidence 89999999999999999999999888 754321 0100 00000
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+.+++||+||+
T Consensus 53 ~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAI 101 (298)
T ss_pred CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHH
Confidence 1123567889999999875 39999999999999763 3467899999999
Q ss_pred hCCceEEEeecCCCCCCC---------CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCcccccc
Q 004047 294 RDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDF 364 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~ 364 (777)
+.+++|||||||...... .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g 178 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG 178 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC
Confidence 999999999999842211 11345777888899999999999999974 346667999999986432200
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
..
T Consensus 179 ---------~~--------------------------------------------------------------------- 180 (298)
T cd07494 179 ---------AR--------------------------------------------------------------------- 180 (298)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
......+.|+|. ..+
T Consensus 181 -------------------------------------------------------------~~~~~~~~~~s~----~~~ 195 (298)
T cd07494 181 -------------------------------------------------------------RASSYASGFRSK----IYP 195 (298)
T ss_pred -------------------------------------------------------------cccccccCcccc----cCC
Confidence 000001112221 124
Q ss_pred CCcCCce----------------eeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCC
Q 004047 525 YILKPDI----------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588 (777)
Q Consensus 525 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 588 (777)
++.|||+ +|||..|.++...... .....+.|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6777887 4799999766532100 011126799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCC
Q 004047 589 SAAIRSALMTTAWMKNN 605 (777)
Q Consensus 589 ~~~ik~~L~~TA~~~~~ 605 (777)
+++||.+|++||+++..
T Consensus 271 ~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 271 PERARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999999997753
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.1e-41 Score=362.53 Aligned_cols=279 Identities=30% Similarity=0.340 Sum_probs=198.3
Q ss_pred ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCC
Q 004047 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (777)
Q Consensus 138 ~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 217 (777)
++++|+||+|||||||||++||+|.+... .+.. ...+++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58999999999999999999999976421 0000 12223332222211 2
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 297 (777)
..|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... ......+..+++++.+.++
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCC
Confidence 227899999999999998533211 114579999999999999887621 2566778999999999999
Q ss_pred eEEEeecCCCCCCCCCccHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCcCCCcceeeeccCccccccccceEeCC
Q 004047 298 HVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGT 372 (777)
Q Consensus 298 dVIn~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~aAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~ 372 (777)
+|||||||..... .......++.++. + +|+++|+||||+|.... ..+...+++|+|||++.......
T Consensus 117 ~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------ 188 (293)
T cd04842 117 RISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------ 188 (293)
T ss_pred EEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc------
Confidence 9999999994321 1233333444333 3 79999999999997654 34455699999999765431000
Q ss_pred CcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEE
Q 004047 373 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 452 (777)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~ 452 (777)
..|..
T Consensus 189 ------------------------------------~~~~~--------------------------------------- 193 (293)
T cd04842 189 ------------------------------------EGGLG--------------------------------------- 193 (293)
T ss_pred ------------------------------------ccccc---------------------------------------
Confidence 00000
Q ss_pred ecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCcee
Q 004047 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 532 (777)
Q Consensus 453 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~ 532 (777)
.....+.++.||++||+. ++++||||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ 220 (293)
T cd04842 194 ---------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLV 220 (293)
T ss_pred ---------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEE
Confidence 001135789999999987 589999999
Q ss_pred eCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-----C---CCCHHHHHHHHHhccc
Q 004047 533 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTAW 601 (777)
Q Consensus 533 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~s~~~ik~~L~~TA~ 601 (777)
|||++|+++.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999975420 0011122678999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=353.49 Aligned_cols=241 Identities=28% Similarity=0.330 Sum_probs=189.5
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
|+|||||+|||++||+|++.. +++..+.+... .....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999997520 11111111110 1135678999
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeec
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 304 (777)
||||||||+|+..+ ...+.||||+|+|+.+|++... + .+...++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~~~~---------~~~~~Gvap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAVGNN---------GLGVAGVAPGAKLMPVRIADSL--G------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhccCC---------CceeEeECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 99999999997421 2345799999999999999876 3 36889999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 305 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
|...........+..++..+.+ +|+++|+||||+|......+...+++|+||+++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 9844333445677777788888 9999999999999776665666799999998542
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.+.+++||+|||.. |++|||.++++...
T Consensus 163 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~ 190 (242)
T cd07498 163 --------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGT 190 (242)
T ss_pred --------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCc
Confidence 23578999999986 99999999988854
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
.... ......+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 191 ~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3211 011122678899999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-41 Score=361.84 Aligned_cols=265 Identities=26% Similarity=0.323 Sum_probs=183.7
Q ss_pred ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCC
Q 004047 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (777)
Q Consensus 138 ~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 217 (777)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ..
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------ED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------CC
Confidence 47999999999999999999999975311 11122211 12
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 297 (777)
..|..||||||||||+|+..+ +...||||+|+|+.+|++... + ......+++||+||++.|+
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~--~------~~~~~~i~~ai~~a~~~g~ 103 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGD--G------GGGDGGILAGIQWAVANGA 103 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCC--C------CCcHHHHHHHHHHHHHcCC
Confidence 567899999999999987422 234699999999999999865 2 3667779999999999999
Q ss_pred eEEEeecCCCCC--------C-CCCccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCCcC---C--
Q 004047 298 HVLSISIGTNQP--------F-AFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN---L-- 348 (777)
Q Consensus 298 dVIn~SlG~~~~--------~-~~~~~~~~~a~~~a---------------~~~Gi~vV~aAGN~G~~~~~~~~---~-- 348 (777)
+|||||||.... . ......+......+ .++|++||+||||+|........ +
T Consensus 104 ~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~ 183 (297)
T cd07480 104 DVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAA 183 (297)
T ss_pred CEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccc
Confidence 999999998331 0 11112232222333 68999999999999865332211 1
Q ss_pred CcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEE
Q 004047 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLC 428 (777)
Q Consensus 349 ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~ 428 (777)
.++++.|++...
T Consensus 184 ~~~~~~V~~V~~-------------------------------------------------------------------- 195 (297)
T cd07480 184 CPSAMGVAAVGA-------------------------------------------------------------------- 195 (297)
T ss_pred cccccEEEEECC--------------------------------------------------------------------
Confidence 123333332211
Q ss_pred ecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCC
Q 004047 429 MRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPA 508 (777)
Q Consensus 429 ~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 508 (777)
.
T Consensus 196 -------------------------------------------------------------------------------~ 196 (297)
T cd07480 196 -------------------------------------------------------------------------------L 196 (297)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCC
Q 004047 509 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588 (777)
Q Consensus 509 ~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 588 (777)
+....|+++.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.++
T Consensus 197 ~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~ 259 (297)
T cd07480 197 GRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAG 259 (297)
T ss_pred CCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 122233333332 34578999999999999876 7899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCcc
Q 004047 589 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPT 631 (777)
Q Consensus 589 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 631 (777)
+.+++.+|+......... .........++|+|++++.
T Consensus 260 ~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 260 GRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 888887777432221000 0012235667899999875
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.9e-41 Score=350.69 Aligned_cols=250 Identities=28% Similarity=0.400 Sum_probs=189.7
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccc---ceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCC
Q 004047 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKG---ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPR 219 (777)
Q Consensus 143 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g---~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (777)
+||+|||||||||++||+|.+. .|.. .+..+...+....... ...+.|. .....+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDD-IYGWNFV-------------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccC-CCccccc-------------CCCCCCC
Confidence 7899999999999999999864 2221 1111110000000000 0001111 1224567
Q ss_pred CCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004047 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (777)
Q Consensus 220 D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 299 (777)
|..+|||||||||+|... ....+.||||+|+|+.+|++... + .++..+++++|+++++.+++|
T Consensus 61 d~~~HGT~va~ii~~~~~---------~~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~v 123 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGN---------NGIGIAGVAWNVKIMPLKFLGAD--G------SGTTSDAIKAIDYAVDMGAKI 123 (259)
T ss_pred CCCCcHHHHHHHHHCcCC---------CCCceEEeCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCeE
Confidence 889999999999999742 22335799999999999999876 3 478899999999999999999
Q ss_pred EEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCcC--CCcceeeeccCccccccccceEeCCCc
Q 004047 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSN--LAPWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 300 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~---~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
||+|||... ....+..++.++.++|+++|+||||+|.... .++. ..+++|+||+.+.
T Consensus 124 in~S~G~~~----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------- 185 (259)
T cd07473 124 INNSWGGGG----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------- 185 (259)
T ss_pred EEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------
Confidence 999999832 2567777888899999999999999986522 2222 2478899987542
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.+.++.||++||. +||+.||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~-------~~~~~ap 205 (259)
T cd07473 186 -----------------------------------------------------NDALASFSNYGKK-------TVDLAAP 205 (259)
T ss_pred -----------------------------------------------------CCCcCcccCCCCC-------CcEEEec
Confidence 2356679999985 3599999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
|.++++..+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 206 G~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999997765 68999999999999999999999999999999999999999984
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-41 Score=352.06 Aligned_cols=248 Identities=21% Similarity=0.172 Sum_probs=174.9
Q ss_pred cccccc-CCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 134 DLLSKA-RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 134 ~~~~~g-~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
++|+.. ..|+||+|+|||+|||.+||+|.++... ...
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC------------
Confidence 788874 4599999999999999999999753110 000
Q ss_pred CCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004047 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 292 (777)
Q Consensus 213 ~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 292 (777)
...+.|+.+|||||||||+|.. +..| +.||||+|+|+.+|++. . ....+.|..|++|+
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~---------n~~G-~~GvAp~a~l~~i~v~~-~---------~~~~~ai~~A~~~~ 101 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKD---------NGIG-VTGIAHGAQAAVVSSTR-V---------SNTADAILDAADYL 101 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeec---------CCCc-eeeeccCCEEEEEEecC-C---------CCHHHHHHHHHhcc
Confidence 0124578899999999999862 1112 57999999999999975 1 12333344444443
Q ss_pred HhCCceEEEeecCCCCCCC-----CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc----------C---CCcceee
Q 004047 293 IRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------N---LAPWLIT 354 (777)
Q Consensus 293 ~~~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~----------~---~ap~vit 354 (777)
...++.+||||||...... .....+..++.++.++|+++|+||||++....... . ..|++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 3356788999999842211 12344556778889999999999999986522111 1 1256788
Q ss_pred eccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcc
Q 004047 355 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434 (777)
Q Consensus 355 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~ 434 (777)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754211
Q ss_pred hhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004047 435 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 514 (777)
Q Consensus 435 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 514 (777)
...++.|
T Consensus 190 -------------------------------------------------------------------------~~~~~~f 196 (277)
T cd04843 190 -------------------------------------------------------------------------GHTRLAF 196 (277)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1137899
Q ss_pred cCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----H-CCCCCH
Q 004047 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDWSS 589 (777)
Q Consensus 515 SS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~s~ 589 (777)
|++|+.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|
T Consensus 197 Sn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~ 265 (277)
T cd04843 197 SNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTP 265 (277)
T ss_pred cCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 9999976 9999999999998763210 0011113357899999999999999999975 3 499999
Q ss_pred HHHHHHHHhccc
Q 004047 590 AAIRSALMTTAW 601 (777)
Q Consensus 590 ~~ik~~L~~TA~ 601 (777)
+|||++|+.|+.
T Consensus 266 ~~v~~~L~~t~~ 277 (277)
T cd04843 266 IEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=3.4e-40 Score=340.16 Aligned_cols=227 Identities=32% Similarity=0.475 Sum_probs=186.1
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||+||+++||+|.+. ++..++|... . .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-----------~-~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-----------D-NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-----------C-CCCCCCCCC
Confidence 799999999999999999743 1122222221 0 024567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||++.... ..+.|+||+|+|+.+|++... + .....+++++++++++.|++|||||
T Consensus 42 HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~--~------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDD--G------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 999999999987421 145799999999999999876 3 3567899999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--cCCCcceeeeccCccccccccceEeCCCcEEEeeee
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 381 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 381 (777)
||... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 99832 234566677888999999999999999776554 556789999998542
Q ss_pred ccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc
Q 004047 382 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 461 (777)
Q Consensus 382 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 461 (777)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEc
Q 004047 462 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541 (777)
Q Consensus 462 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa 541 (777)
.+.++.||++|+.. |+.|||.+|+++
T Consensus 159 ----------------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 159 ----------------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred ----------------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 23566899999965 999999999999
Q ss_pred ccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
++. +.|..++|||||||+|||++|||+|++|.+++.+||++|++|
T Consensus 185 ~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 887 689999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-40 Score=342.92 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=119.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
+++|+|||||||||++||+|.++ ++..+.|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 11222222210000 0011123578
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 301 (777)
.||||||||||+ |+||+|+|+.+|+++....+ .....++...+++||+||+++|+||||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~--~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPD--SNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCC--CcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 899999999995 78999999999999865211 000135678899999999999999999
Q ss_pred eecCCCCCC--CCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCc--CCCcceeeeccCc
Q 004047 302 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLS--NLAPWLITVGAGS 359 (777)
Q Consensus 302 ~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~--~~ap~vitVgAs~ 359 (777)
||||..... ......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999983321 123567788889999999999999999997754 333 3358999999865
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=5.2e-40 Score=351.85 Aligned_cols=255 Identities=23% Similarity=0.240 Sum_probs=175.2
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
.|+|||||||||++||+|++.-. ...+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 38999999999999999985311 0000110000000000000111234567899
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||+|+|+. . ..||||+|+|+.+|+++.. + .....+++++|+||++++++|||||
T Consensus 55 HGT~vAgiia~~~--------~-----~~GvAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAANG--------N-----IKGVAPGIGIVSYRVFGSC--G------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcCC--------C-----CceeCCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999862 1 2499999999999999876 3 3478899999999999999999999
Q ss_pred cCCCCCCCC-------CccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC----------------------cCCCcceee
Q 004047 304 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAPSSL----------------------SNLAPWLIT 354 (777)
Q Consensus 304 lG~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~----------------------~~~ap~vit 354 (777)
||....... ..+.+..++..+.++|++||+||||+|...... +...+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 998432111 123456667778899999999999999653111 111234444
Q ss_pred eccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcc
Q 004047 355 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434 (777)
Q Consensus 355 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~ 434 (777)
|||++
T Consensus 194 Vga~~--------------------------------------------------------------------------- 198 (294)
T cd07482 194 VSATD--------------------------------------------------------------------------- 198 (294)
T ss_pred EEeeC---------------------------------------------------------------------------
Confidence 44432
Q ss_pred hhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004047 435 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 514 (777)
Q Consensus 435 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 514 (777)
..+.++.|
T Consensus 199 ------------------------------------------------------------------------~~~~~~~~ 206 (294)
T cd07482 199 ------------------------------------------------------------------------NNGNLSSF 206 (294)
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 23567789
Q ss_pred cCCCCCCCCCCCcCCceeeCCCcEEEcccCCCC---CCc------ccCCcccccceeeccccchhhHHHHHHHHHHHHCC
Q 004047 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASS---PSK------LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 585 (777)
Q Consensus 515 SS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P 585 (777)
|++|+.. +|++|||+++....+.... ... .......+.|..++|||||||+|||++|||+|++|
T Consensus 207 S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p 279 (294)
T cd07482 207 SNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNP 279 (294)
T ss_pred ccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCC
Confidence 9998764 4999999998533221100 000 00112336899999999999999999999999999
Q ss_pred CCCH-HHHHHHHHhc
Q 004047 586 DWSS-AAIRSALMTT 599 (777)
Q Consensus 586 ~~s~-~~ik~~L~~T 599 (777)
.+++ .|||++|++|
T Consensus 280 ~~~~~~~v~~~L~~T 294 (294)
T cd07482 280 LKKPPDEAIRILYNT 294 (294)
T ss_pred CCCcHHHHHHHHhhC
Confidence 9999 9999999986
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=7.7e-41 Score=356.06 Aligned_cols=275 Identities=34% Similarity=0.442 Sum_probs=207.4
Q ss_pred EEEEeecCCCCCCCCCC-CCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 146 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 146 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
+|||||||||++||+|. ++ + ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 112333444454431 112356678899
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hCCceEEEee
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 303 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~S 303 (777)
||||||||+|.. . . ......|+||+|+|+.+|++... + .....++++|++++ +++++|||||
T Consensus 49 GT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~--~-------~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNS--G-------GTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTT--S-------EEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-c------ccccccccccccccccccccccc--c-------cccccccchhhhhhhccCCcccccc
Confidence 999999999985 1 1 12234799999999999997765 2 57888999999999 8999999999
Q ss_pred cCCC--CCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CcC--CCcceeeeccCccccccccceEeCCCcEEEe
Q 004047 304 IGTN--QPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSN--LAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 304 lG~~--~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
||.. .......+.+..+.+.+.++|+++|+||||+|..... +.. ..+++|+||+++.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 9882 1222233445666778999999999999999876553 333 3478888887432
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcE
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I 538 (777)
.+.++.||++|+... ++++||||+|||.+|
T Consensus 174 -------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 174 -------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNI 203 (282)
T ss_dssp -------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSE
T ss_pred -------------------------------------------------ccccccccccccccc-ccccccccccccccc
Confidence 236689999976543 589999999999999
Q ss_pred EEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCC
Q 004047 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 618 (777)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 618 (777)
+++++.... ..|..++|||||||+|||++|||+|++|++++.+||.+|++||.+.... +...
T Consensus 204 ~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~--------~~~~ 265 (282)
T PF00082_consen 204 LSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST--------NGEG 265 (282)
T ss_dssp EEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET--------TSSS
T ss_pred ccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC--------CCCC
Confidence 998876210 3578899999999999999999999999999999999999999988721 1234
Q ss_pred CCCceeeeccCccccCC
Q 004047 619 TPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 619 ~~~~~G~G~vn~~~Al~ 635 (777)
.+..||||+||+.+|++
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 56789999999999874
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1e-39 Score=350.04 Aligned_cols=247 Identities=20% Similarity=0.163 Sum_probs=179.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|+|||||||++||+|.+.... ...++|....
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC-----------
Confidence 8999999999999999999999999999753210 0111222110
Q ss_pred CCCCC--CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 214 DDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 214 ~~~~~--~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
....+ .|..||||||||||+|+... .....||||+|+|+.+|++... ........++.+
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiiag~~~~---------~~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~ 134 (297)
T cd04059 74 PDPTPRYDDDNSHGTRCAGEIAAVGNN---------GICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGL 134 (297)
T ss_pred CCCCCccccccccCcceeeEEEeecCC---------CcccccccccceEeEEEecCCc----------cccHHHHHHHhc
Confidence 00112 37889999999999998421 1124699999999999998754 234455666666
Q ss_pred HHhCCceEEEeecCCCCCCC---CCccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCC--c--CCCcceeeeccCc
Q 004047 292 AIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL--S--NLAPWLITVGAGS 359 (777)
Q Consensus 292 a~~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~aAGN~G~~~~~~--~--~~ap~vitVgAs~ 359 (777)
+.+ .++|||||||...... ........++.++.+ +|++||+||||+|...... . ...|++|+|||++
T Consensus 135 ~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 135 NPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred ccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 554 5699999999843221 122233444444443 6999999999999732221 1 2347899999754
Q ss_pred cccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhh
Q 004047 360 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439 (777)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~ 439 (777)
.
T Consensus 214 ~------------------------------------------------------------------------------- 214 (297)
T cd04059 214 A------------------------------------------------------------------------------- 214 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004047 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 519 (777)
Q Consensus 440 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 519 (777)
.+.++.||++|+
T Consensus 215 --------------------------------------------------------------------~g~~~~~s~~g~ 226 (297)
T cd04059 215 --------------------------------------------------------------------NGVRASYSEVGS 226 (297)
T ss_pred --------------------------------------------------------------------CCCCcCCCCCCC
Confidence 246779999999
Q ss_pred CCCCCCCcCCceeeCCCc-------EEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHH
Q 004047 520 NALDPYILKPDITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAI 592 (777)
Q Consensus 520 ~~~~d~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~i 592 (777)
.. ++.|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.+|
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 87 89999987 777665420 146788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 004047 593 RSALMTTAW 601 (777)
Q Consensus 593 k~~L~~TA~ 601 (777)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-39 Score=329.36 Aligned_cols=222 Identities=21% Similarity=0.246 Sum_probs=172.5
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||||||++||+|.+.-. ..+.+... . ...+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc-c-------cccCCCCCCCCCC
Confidence 79999999999999999975311 00111000 0 0011234567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||++ .+|+++|+.+|+++.. + .+..+.+++||+|++++|++|||||
T Consensus 46 HGT~vAgiia~-------------------~~p~~~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~v~Vin~S 98 (222)
T cd07492 46 HGTACAGIIKK-------------------YAPEAEIGSIKILGED--G------RCNSFVLEKALRACVENDIRIVNLS 98 (222)
T ss_pred cHHHHHHHHHc-------------------cCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 99999999975 3599999999999876 3 4788999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
||... ......+..++.++.++|+++|+||||++..... +...+++|+|++.+.+.
T Consensus 99 ~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 99 LGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC---------------------
Confidence 99832 2233566777888889999999999999865332 44458899998753211
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.. +.+++ ++|+.|||.+|+++.+
T Consensus 155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~ 177 (222)
T cd07492 155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP 177 (222)
T ss_pred ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence 11 11233 3499999999999987
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
. +.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 178 ~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 178 H-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred C-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7 68999999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.1e-38 Score=332.16 Aligned_cols=245 Identities=31% Similarity=0.356 Sum_probs=186.3
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004047 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (777)
Q Consensus 141 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (777)
+|+||+|+|||+||+++||+|.+..... ..+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc---------cccCCCCCC
Confidence 6999999999999999999997642100 0000000 000124567
Q ss_pred CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004047 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (777)
Q Consensus 221 ~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 300 (777)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++.... .+....+.++++++++.+++||
T Consensus 45 ~~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 889999999999997422 34579999999999999987521 2567889999999999999999
Q ss_pred EeecCCCCCCC-----------CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc---------CCCcceeeeccCcc
Q 004047 301 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 360 (777)
Q Consensus 301 n~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~---------~~ap~vitVgAs~~ 360 (777)
|||||...... ...+.+......+.++|+++|+||||++....... ...+++|+||+++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999843221 24556667778899999999999999986543332 23478889988653
Q ss_pred ccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhH
Q 004047 361 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440 (777)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~ 440 (777)
+.
T Consensus 188 ~~------------------------------------------------------------------------------ 189 (267)
T cd04848 188 NG------------------------------------------------------------------------------ 189 (267)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc--ccCCC
Q 004047 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRG 518 (777)
Q Consensus 441 ~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~G 518 (777)
.... ||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~~s~~~ 200 (267)
T cd04848 190 ---------------------------------------------------------------------TIASYSYSNRC 200 (267)
T ss_pred ---------------------------------------------------------------------Ccccccccccc
Confidence 2233 48888
Q ss_pred CCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHh
Q 004047 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (777)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 598 (777)
+.. -.+++.|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++
T Consensus 201 ~~~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~ 264 (267)
T cd04848 201 GVA-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLT 264 (267)
T ss_pred hhh-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 643 23479999999999987311 67889999999999999999999999999999999999999
Q ss_pred ccc
Q 004047 599 TAW 601 (777)
Q Consensus 599 TA~ 601 (777)
||+
T Consensus 265 tA~ 267 (267)
T cd04848 265 TAT 267 (267)
T ss_pred hcC
Confidence 985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=331.03 Aligned_cols=366 Identities=24% Similarity=0.318 Sum_probs=267.9
Q ss_pred CcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhh------ccceEEEeeeeEeEEEEEcCH-----HHHHHhhcC
Q 004047 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEA------RASHLYSYKHSINGFSAVLTP-----DEAARLSEL 91 (777)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~s~~~~~-----~~~~~L~~~ 91 (777)
...|||+|+..-. ...++..+++.+...... +-..-..|...|.-+-++-.. -++++|+.+
T Consensus 49 e~EyIv~F~~y~~--------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP--------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEeccccc--------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 4689999997652 235666777766533211 111233455555555554332 357999999
Q ss_pred CCeEEEEeCCCCcccccc------------CCccccc-ccch---hh----hcccC-c--------cc--cccccccccC
Q 004047 92 EEVVSVYPSHPEKYSLQT------------TRSWEFV-GLDE---VA----KQNWN-H--------FN--MGQDLLSKAR 140 (777)
Q Consensus 92 ~~V~~V~~~~~~~~~~~~------------~~s~~~~-gl~~---~~----~~~~~-~--------~~--~~~~~~~~g~ 140 (777)
|.|+.|.|.+ .+..-. +.+-.++ |... .+ ..+++ | .+ .++.+|..|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999987 443210 0000000 0000 00 00000 0 11 2358999999
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004047 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (777)
Q Consensus 141 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (777)
+|++|+|||.|||+.-+||.|+.- ....++++. ..-.|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------ccccc
Confidence 999999999999999999999731 111112211 24567
Q ss_pred CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004047 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (777)
Q Consensus 221 ~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 300 (777)
..||||.|||+|||.. .-.|.||+++|+++|||-+.+ -...+.+++|+.||+..+.||+
T Consensus 237 ~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 8999999999999872 236999999999999998874 3688999999999999999999
Q ss_pred EeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCC--cceeeeccCccccccccceEeCCCcEEEe
Q 004047 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 301 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~a--p~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
|+|+|++ ++.+.|+-.-+.....++|++|.|+||+||-.++..+++ ..||-||..
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------- 352 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------- 352 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------
Confidence 9999993 466677776677888999999999999999999998876 356666632
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCCceeeC
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAP 534 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~d~~~KPDI~AP 534 (777)
...+.++.|||||-+.. .-||+||||++-
T Consensus 353 -----------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 353 -----------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -----------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEee
Confidence 12468999999996442 248999999999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----HCCCCCHHHHHHHHHhcccccCCCCCcc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPI 610 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~~~g~~~ 610 (777)
|.+|...... .+...+||||.|+|+|||+++||.+ +.--+.|+.+|++|..+|.+++..
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9999877655 6788999999999999999999976 345578999999999999999753
Q ss_pred cCCCCCCCCCCceeeeccCccccCCC
Q 004047 611 TNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 611 ~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
.-++||+|++|+.++++-
T Consensus 449 --------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 --------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred --------chhhccCcchhHHHHHHH
Confidence 457899999999988873
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=320.41 Aligned_cols=241 Identities=24% Similarity=0.260 Sum_probs=187.4
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 301 (777)
.-||||||||++|+..+.... .||||+|+|+++++-+..-.. .-+...+.+|+..++++++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p~~---------NGvAPgaqIvSl~IGD~RLgs------METgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPEL---------NGVAPGAQIVSLKIGDGRLGS------METGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCccc---------cCCCCCCEEEEEEecCccccc------cccchHHHHHHHHHHHhcCCEEE
Confidence 569999999999997665433 499999999999996654211 24556799999999999999999
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCC---cceeeeccCccccccccceEeCCCcEEEe
Q 004047 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA---PWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 302 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~a---p~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
||+|-+...+.....++.+-..+.++|+++|+||||+||...+++.+. ..+|.|||.....+..+...+
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~-------- 446 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSV-------- 446 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhh--------
Confidence 999985544555556666656677889999999999999988888653 588999986433221111000
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 447 -------------------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 447 -------------------------------------------------------------------------------- 446 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcE
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I 538 (777)
..+.......||||||+. ||.+--.|+|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccc
Confidence 001123577899999998 799999999999998
Q ss_pred EEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCCHHHHHHHHHhcccccCCCCCcccCCC
Q 004047 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALPITNAD 614 (777)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 614 (777)
.+.-.-.- ..-..|+|||||+|+++|.+|||++. +-.|||..||.+|++||.++++.
T Consensus 480 AsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------- 540 (1304)
T KOG1114|consen 480 ASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------- 540 (1304)
T ss_pred cCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------
Confidence 66421110 35578999999999999999999664 56799999999999999998764
Q ss_pred CCCCCCCceeeeccCccccCC
Q 004047 615 GSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 615 ~~~~~~~~~G~G~vn~~~Al~ 635 (777)
.++.+|.|++++.+|.+
T Consensus 541 ----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 ----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----chhccCcceeehhHHHH
Confidence 67899999999999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-34 Score=292.00 Aligned_cols=195 Identities=24% Similarity=0.246 Sum_probs=141.5
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH--HhC
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRD 295 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a--~~~ 295 (777)
..|+.||||||||||||. .|++|+++|+..++... ..+.+..+++|+ .+.
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~~------------~~~~~~~~i~~~~~~~~ 84 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGIK------------SNNGQWQECLEAQQNGN 84 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCCC------------CCCccHHHHHHHHHhcC
Confidence 457899999999999987 26679999987665221 223356677787 667
Q ss_pred CceEEEeecCCCCCCC-----CCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCC---C--cCCCcceeeeccCcccccc
Q 004047 296 GVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS---L--SNLAPWLITVGAGSLDRDF 364 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~---~--~~~ap~vitVgAs~~~~~~ 364 (777)
+++|||||||...... ...+.+..+++.+.++ |+++|+||||+|..... + +..++++|+|||++....
T Consensus 85 gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~- 163 (247)
T cd07488 85 NVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD- 163 (247)
T ss_pred CceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-
Confidence 9999999999843322 1234566677776666 99999999999975322 2 234578999998653210
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
....+.||++|-....+
T Consensus 164 ---------------------------------------------------------------~~~~s~~sn~~~~~~~~ 180 (247)
T cd07488 164 ---------------------------------------------------------------RFFASDVSNAGSEINSY 180 (247)
T ss_pred ---------------------------------------------------------------cceecccccccCCCCCC
Confidence 01234566654322225
Q ss_pred CCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHH------HHHHHHHh
Q 004047 525 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA------AIRSALMT 598 (777)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~------~ik~~L~~ 598 (777)
+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+. ++|.+|++
T Consensus 181 ~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~ 245 (247)
T cd07488 181 GRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSS 245 (247)
T ss_pred CCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhc
Confidence 7899999999999998 33 578899999999999999999999999887643 56666665
Q ss_pred c
Q 004047 599 T 599 (777)
Q Consensus 599 T 599 (777)
|
T Consensus 246 ~ 246 (247)
T cd07488 246 S 246 (247)
T ss_pred c
Confidence 5
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.1e-30 Score=270.04 Aligned_cols=197 Identities=34% Similarity=0.443 Sum_probs=156.8
Q ss_pred CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hC
Q 004047 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 295 (777)
Q Consensus 217 ~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~ 295 (777)
...+..+||||||++|++..... ...|+||+++|+.+|+.... + ......+++++++++ ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~----------~~~g~a~~a~i~~~~~~~~~--~------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG----------GGVGVAPGAKLIPVKVLDGD--G------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC----------CCEEeCCCCEEEEEEEecCC--C------CcCHHHHHHHHHHHHhcc
Confidence 45578899999999999874221 12699999999999998876 3 367889999999999 89
Q ss_pred CceEEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCcCCCcceeeeccCccccccccceEeC
Q 004047 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLG 371 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~ 371 (777)
+++|||||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++...
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------- 169 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------- 169 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------
Confidence 999999999993221 345667777788888 9999999999997765 3555679999999865321
Q ss_pred CCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEE
Q 004047 372 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 451 (777)
Q Consensus 372 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi 451 (777)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc-cccCCCCCCCCCCCcCCc
Q 004047 452 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA-NFTSRGPNALDPYILKPD 530 (777)
Q Consensus 452 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~Gp~~~~d~~~KPD 530 (777)
... .++++|+ |||
T Consensus 170 ----------------------------------------------------------~~~~~~~~~~~--------~~~ 183 (241)
T cd00306 170 ----------------------------------------------------------TPASPSSNGGA--------GVD 183 (241)
T ss_pred ----------------------------------------------------------CccCCcCCCCC--------Cce
Confidence 111 3444444 669
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
+.|||.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 184 ~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 184 IAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred EEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999875111 11688999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-24 Score=244.41 Aligned_cols=272 Identities=28% Similarity=0.399 Sum_probs=196.5
Q ss_pred ccccc--cCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCC
Q 004047 134 DLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (777)
Q Consensus 134 ~~~~~--g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 211 (777)
..|.. +++|+||+|+|||+||+..||+|.+... ..++|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~---------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG---------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC----------
Confidence 57776 9999999999999999999999975421 00112221
Q ss_pred CCCCC-CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004047 212 TEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (777)
Q Consensus 212 ~~~~~-~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 290 (777)
... ...|..+|||||+|++++.... ....+.|+||+++++.+|++.... | ....++++.+|+
T Consensus 174 --~~~~~~~d~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~-g------~~~~~~~~~~i~ 236 (508)
T COG1404 174 --DPEPPFLDDNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGG-G------SGELSDVAEGIE 236 (508)
T ss_pred --CCCCCCCCCCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCC-C------cccHHHHHHHHH
Confidence 011 2568899999999999984211 112257999999999999998653 3 467888899999
Q ss_pred HHHhCC--ceEEEeecCCCCCCCCCccHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----CcCCC--cceeeeccCccc
Q 004047 291 DAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGSLD 361 (777)
Q Consensus 291 ~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~aAGN~G~~~~~----~~~~a--p~vitVgAs~~~ 361 (777)
++++.+ +++||||+|.. ........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 237 ~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~- 314 (508)
T COG1404 237 GAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL- 314 (508)
T ss_pred HHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-
Confidence 999999 99999999983 22234455666667777777 9999999999966421 11111 35566665321
Q ss_pred cccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHH
Q 004047 362 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 441 (777)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~ 441 (777)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004047 442 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 521 (777)
Q Consensus 442 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 521 (777)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 24778899999741
Q ss_pred CCCCCcCCceeeCCCcEEE-----cccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC-CCCHHHHHHH
Q 004047 522 LDPYILKPDITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSA 595 (777)
Q Consensus 522 ~~d~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~ 595 (777)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 2299999999998 444410 2499999999999999999999999999 8999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 596 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 596 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
+..++.... .......++.|..+...+..
T Consensus 392 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 392 IVTTAGLTP-----------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred Hhhcccccc-----------CCccccccccCccccccccc
Confidence 888887400 11133456666666555443
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-21 Score=195.44 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=103.7
Q ss_pred cccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 133 ~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
..+|..|++||+|.++|+|.||||-|||+..+ ..--..++|..+..+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n-------------------------ynaeasydfssndpf-------- 197 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------------YNAEASYDFSSNDPF-------- 197 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc-------------------------cCceeecccccCCCC--------
Confidence 48999999999999999999999999999632 111223334332111
Q ss_pred CCCCCCCC--CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004047 213 EDDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (777)
Q Consensus 213 ~~~~~~~D--~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 290 (777)
+++...| .+.|||.|||-+++...++.+ | .|||.+.++..+|+++.. +..++++|-.
T Consensus 198 -pyprytddwfnshgtrcagev~aardngic---g------vgvaydskvagirmldqp-----------ymtdlieans 256 (629)
T KOG3526|consen 198 -PYPRYTDDWFNSHGTRCAGEVVAARDNGIC---G------VGVAYDSKVAGIRMLDQP-----------YMTDLIEANS 256 (629)
T ss_pred -CCCcccchhhhccCccccceeeeeccCCce---e------eeeeeccccceeeecCCc-----------hhhhhhhhcc
Confidence 1122223 579999999999887655443 2 499999999999998753 5566666532
Q ss_pred HHHh-CCceEEEeecCCCCCCCCCc---cHHHHHHHHHHh-----CCcEEEEecCCCCCC
Q 004047 291 DAIR-DGVHVLSISIGTNQPFAFNR---DGIAIGALNAVK-----HNILVACSAGNSGPA 341 (777)
Q Consensus 291 ~a~~-~gvdVIn~SlG~~~~~~~~~---~~~~~a~~~a~~-----~Gi~vV~aAGN~G~~ 341 (777)
.--+ ...+|.+-|||..+.....+ +...+++-+-+. .|-+.|.|.|..|.+
T Consensus 257 mghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred cCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2211 36799999999864433333 333333333333 367999999998854
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.70 E-value=1.1e-16 Score=175.53 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=78.4
Q ss_pred CceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEeecCCCCCC--CCCccHHHHHHHH
Q 004047 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPF--AFNRDGIAIGALN 323 (777)
Q Consensus 249 g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~--~~~~~~~~~a~~~ 323 (777)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... ....+.+..++.+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~ 148 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQ 148 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHH
Confidence 346799999999999997542 34577888888887 999999999983221 1123567777888
Q ss_pred HHhCCcEEEEecCCCCCCCCC-----------CcCCCcceeeeccCcccc
Q 004047 324 AVKHNILVACSAGNSGPAPSS-----------LSNLAPWLITVGAGSLDR 362 (777)
Q Consensus 324 a~~~Gi~vV~aAGN~G~~~~~-----------~~~~ap~vitVgAs~~~~ 362 (777)
|..+||+||+|+||+|..... .+...|+|++||+++...
T Consensus 149 a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999999999976532 234569999999987654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.32 E-value=2.1e-11 Score=113.22 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=99.9
Q ss_pred eEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCc-chhhhhHHHhhcC
Q 004047 368 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 446 (777)
Q Consensus 368 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~-~~~~~~~~~~~~G 446 (777)
++|||++++.|+++++... ..+++++.... ........|.+..++..+++||||||+|+.+ .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997665 46677763321 1234557899998888999999999999999 9999999999999
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEE
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 495 (777)
|.|+|++++.............+|.+.|..++|+.|.+|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999987654333333467999999999999999999998776554
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=2.1e-11 Score=115.52 Aligned_cols=105 Identities=27% Similarity=0.346 Sum_probs=82.8
Q ss_pred CCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcccc-CCccccEEEEeHHHHHHHHHHHhcC
Q 004047 411 CLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIKIHEYIKST 489 (777)
Q Consensus 411 c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~ 489 (777)
|...++...+++|||+||+|+.|.+.+|..+++++||.|+|++|+......... ....+|.++|+.++|+.|.+|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 555566677899999999999999999999999999999999998754322211 135789999999999999999988
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCC
Q 004047 490 NNPTAIIKQARTVLHTQPAPFMANFTSRGPN 520 (777)
Q Consensus 490 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 520 (777)
.+++....+.. ..+.+.++.||||||.
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCC
Confidence 34444433333 4567889999999996
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.87 E-value=9.1e-09 Score=94.72 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc---ccc--CCccccEEEEeHHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE---YSY--DAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 482 (777)
...|.+..++..+++|||+||+||.|.|.+|..+++++||.++|+||+...... ... ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 477999888888999999999999999999999999999999999998653211 111 345699999999999999
Q ss_pred HHHHhcCCCceEE
Q 004047 483 HEYIKSTNNPTAI 495 (777)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (777)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988776654
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.87 E-value=1.3e-08 Score=95.18 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCCCCCCCCC--CCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHH
Q 004047 407 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 480 (777)
Q Consensus 407 ~~~~c~~~~~--~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 480 (777)
....|.+... ++.++.|+|+|++||.|+|.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998887 66789999999999999999999999999999999999876222111 22347899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 004047 481 KIHEYIKSTNNPTAII 496 (777)
Q Consensus 481 ~l~~~~~~~~~~~~~i 496 (777)
.|++++.++.+++++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999998877653
No 48
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.84 E-value=5.8e-09 Score=88.81 Aligned_cols=78 Identities=33% Similarity=0.455 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCCcccchhhhhHHHHHHHhhCCc----hhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeC
Q 004047 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPS 100 (777)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~ 100 (777)
+|||.|++... .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|+++|+|++|+||
T Consensus 1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999873 3344667777777554321 233568999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 004047 101 HPEKYSLQ 108 (777)
Q Consensus 101 ~~~~~~~~ 108 (777)
+ .++++
T Consensus 77 ~--~v~l~ 82 (82)
T PF05922_consen 77 Q--VVSLH 82 (82)
T ss_dssp C--EEEE-
T ss_pred c--eEecC
Confidence 9 77653
No 49
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.84 E-value=1.9e-08 Score=91.38 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC-Ccc---c----cCCccccEEEEeHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NEY---S----YDAHYLPATAVLYDDA 479 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~~~---~----~~~~~~p~~~i~~~~g 479 (777)
...|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|+||+.... ... . .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999975431 111 1 1235799999999999
Q ss_pred HHHHHHHhcCCCceEEEE
Q 004047 480 IKIHEYIKSTNNPTAIIK 497 (777)
Q Consensus 480 ~~l~~~~~~~~~~~~~i~ 497 (777)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877663
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.82 E-value=1.7e-08 Score=91.04 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc--cc--cCCccccEEEEeHHHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 482 (777)
....|.+.++.+.+++|+|+|++||.|+|.+|..+++++||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 3477999998888999999999999999999999999999999999998653111 11 1346789999999999999
Q ss_pred HHHHhcC
Q 004047 483 HEYIKST 489 (777)
Q Consensus 483 ~~~~~~~ 489 (777)
.+.+...
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9887643
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.75 E-value=5.2e-08 Score=89.19 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 482 (777)
....|.+...+ .+++|||+||+|+.|.|.+|..++.++||.|+|++|+........ .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888874 469999999999999999999999999999999999866421111 1235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004047 483 HEYIKSTNNPTAI 495 (777)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (777)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766554
No 52
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.71 E-value=6.3e-08 Score=89.42 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC-----Cc--cc-----cCCccccEEEEe
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-----NE--YS-----YDAHYLPATAVL 475 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-----~~--~~-----~~~~~~p~~~i~ 475 (777)
...|.+... +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... .. +. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 667999999999999999999999999999999999875532 11 11 124578999999
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004047 476 YDDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 476 ~~~g~~l~~~~~~~~~~~~ 494 (777)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998776654
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.71 E-value=2.1e-08 Score=89.03 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC----CCCccccCCccccEEEEeHHHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA----NGNEYSYDAHYLPATAVLYDDAIKIH 483 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 483 (777)
...|.+......+++||||||+||.|+|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577778889999999999999999999999999999999999999211 11223344678999999999999999
Q ss_pred HHH
Q 004047 484 EYI 486 (777)
Q Consensus 484 ~~~ 486 (777)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.68 E-value=7.1e-08 Score=89.32 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCCCCCCC--CCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc-c-----cCCccccEEEEeHHH
Q 004047 407 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-S-----YDAHYLPATAVLYDD 478 (777)
Q Consensus 407 ~~~~c~~~~--~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 478 (777)
....|.+.. +...+++||||||+|+.|.|.+|..+++++||.|+|++++....... . .....+|+++|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 446798887 77889999999999999999999999999999999999987532111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceEE
Q 004047 479 AIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 479 g~~l~~~~~~~~~~~~~ 495 (777)
|+.|.+|+.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987765543
No 55
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.68 E-value=9.3e-08 Score=88.04 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc--c--ccCCccccEEEEeHHHHHHHHH
Q 004047 409 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--Y--SYDAHYLPATAVLYDDAIKIHE 484 (777)
Q Consensus 409 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 484 (777)
..|.+..+ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. . ..+...+|.++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46887655 35799999999999999999999999999999999998632211 1 1224679999999999999999
Q ss_pred HHhcCCCceEE
Q 004047 485 YIKSTNNPTAI 495 (777)
Q Consensus 485 ~~~~~~~~~~~ 495 (777)
.+.++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99999877664
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.5e-07 Score=88.54 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc------cCCccccEEEEeHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 481 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 481 (777)
...|.+.. .+++|+|+|++||.|+|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 379999999999999999999999999999999998764322111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 004047 482 IHEYIKSTNNPTA 494 (777)
Q Consensus 482 l~~~~~~~~~~~~ 494 (777)
|++++..+.+.++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998877654
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.62 E-value=1.7e-07 Score=86.30 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCCCCCCCC--CC----cccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc-c----------ccCCcccc
Q 004047 408 TNQCLPGSLT--PE----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-Y----------SYDAHYLP 470 (777)
Q Consensus 408 ~~~c~~~~~~--~~----~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~----------~~~~~~~p 470 (777)
...|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|+||+.+.... . ......||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 378999999999999999999999999999999998653211 1 01234689
Q ss_pred EEEEeHHHHHHHHHHHhcCCCceEE
Q 004047 471 ATAVLYDDAIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 471 ~~~i~~~~g~~l~~~~~~~~~~~~~ 495 (777)
+++|+..+|+.|.+.+.++..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999998876654
No 58
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.62 E-value=4.9e-07 Score=81.92 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=61.7
Q ss_pred eEeecCCceEEEEEEEEecCCCCeeEEEEeeCC--------Ccc-----------EEEEecceEEEccCCcEEEEEEEEE
Q 004047 680 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPP--------MGV-----------SVKANPSILFFDHIGQKKSFTITVR 740 (777)
Q Consensus 680 ~~~~~~~~~~t~~~tvtn~~~~~~ty~~~~~~~--------~g~-----------~v~v~p~~~~~~~~~~~~~~~v~~~ 740 (777)
|++++.....+++++|+|.|+.+.+|+++..+. .|. .+...|.++++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345566667899999999999999999887611 111 56667888888 6799999999999
Q ss_pred ECcccccccCCCceEEEEEEEECC-c-cEEEeeEE
Q 004047 741 LGSETTRQGLTKQYVFGWYRWTDG-L-HLVRSPMA 773 (777)
Q Consensus 741 ~~~~~~~~~~~~~~~~G~~~~~~~-~-~~v~~P~~ 773 (777)
.++. ....++.+++|+|.+++. . +.+++||+
T Consensus 80 ~p~~--~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSG--LDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GG--GHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhc--CCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9532 122568899999999963 3 58999996
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2.6e-07 Score=85.39 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHH
Q 004047 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHE 484 (777)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~ 484 (777)
.....|.+...+..+++|+|+|++||.|.|.+|..+++++||.++|+||+...... ...+...+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34578998776667899999999999999999999999999999999998654321 1223334565655 999999999
Q ss_pred HHhcCCCceEE
Q 004047 485 YIKSTNNPTAI 495 (777)
Q Consensus 485 ~~~~~~~~~~~ 495 (777)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99988776654
No 60
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=1.9e-07 Score=86.78 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCCCCcccceEEEEecCCcc-----hhhhhHHHhhcCceEEEEecCCCC-CC---cccc--CCccccEEEEeHHHHHHHH
Q 004047 415 SLTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSPAN-GN---EYSY--DAHYLPATAVLYDDAIKIH 483 (777)
Q Consensus 415 ~~~~~~~~g~ivl~~~g~~~-----~~~~~~~~~~~Ga~gvi~~n~~~~-~~---~~~~--~~~~~p~~~i~~~~g~~l~ 483 (777)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+... +. .+.. ....||+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 44566899999999999999 999999999999999999999731 21 1122 1468999999999999999
Q ss_pred HHHhcC
Q 004047 484 EYIKST 489 (777)
Q Consensus 484 ~~~~~~ 489 (777)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988544
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.54 E-value=3.5e-07 Score=82.95 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC--ccc----cCCccccEEEEeHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN--EYS----YDAHYLPATAVLYDDAI 480 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~--~~~----~~~~~~p~~~i~~~~g~ 480 (777)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|+||+..... ... .....+|+++|+.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34689766 56889999999999999999999999999999999998765321 111 22357999999999999
Q ss_pred HHHHHHhcC
Q 004047 481 KIHEYIKST 489 (777)
Q Consensus 481 ~l~~~~~~~ 489 (777)
.|..++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 998876543
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.48 E-value=6.4e-07 Score=85.57 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCCCCCCCCC---CcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC-cccc-----CCccccEEEEeHHH
Q 004047 408 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 478 (777)
Q Consensus 408 ~~~c~~~~~~~---~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 478 (777)
...|.+....+ .++.|+|+|++||.|+|.+|..+++++||.++|+||+..... .... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 789999999999999999999999999999999999865322 1111 14589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004047 479 AIKIHEYIKSTNN 491 (777)
Q Consensus 479 g~~l~~~~~~~~~ 491 (777)
|+.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987755
No 63
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.4e-06 Score=93.67 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=96.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
..|..+++|+++.|+|.|.|+...||+.... ....+..++...... ..
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~-------p~ 71 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDND-------PE 71 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCC-------cc
Confidence 7899999999999999999999999998642 112222222221100 01
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
.-.+......|||-|++-.+....+... ..|+++++++..++++... .. +...+.....
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~~C---------~vg~~~~~~~~g~~~l~~~----------v~--~~~~~~~~~~ 130 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNLTC---------GVGVAYNATIGGIRMLAGC----------VS--DAVEAPSLGF 130 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCCcC---------CCCcccCccccceeeeeee----------cc--cceecccccC
Confidence 1112224588999999999987533222 2599999999999998643 11 2222222222
Q ss_pred -hCCceEEEeecCCCCCCCC---CccHHHHHHHH-----HHhCCcEEEEecCCCCCCC
Q 004047 294 -RDGVHVLSISIGTNQPFAF---NRDGIAIGALN-----AVKHNILVACSAGNSGPAP 342 (777)
Q Consensus 294 -~~gvdVIn~SlG~~~~~~~---~~~~~~~a~~~-----a~~~Gi~vV~aAGN~G~~~ 342 (777)
..-+++-+.|||...-... .......+... ...+|-+.|++.||.|...
T Consensus 131 ~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 131 GPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 2357899999998432111 11222222232 3356889999999988543
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.9e-06 Score=100.15 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=56.7
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc-eEEEeecCCCC--CCCC--CccHHHHHHHHHH
Q 004047 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQ--PFAF--NRDGIAIGALNAV 325 (777)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~~a~ 325 (777)
.+-+||.|+|..|-. .. .....+..|+.+....=+ -+|-.||+... .... .-+.+......|.
T Consensus 288 s~A~AP~A~I~lvva--p~----------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEc--CC----------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 467899999999877 21 122333333333222211 33445666521 1111 2234444556788
Q ss_pred hCCcEEEEecCCCCCCCCC--------CcCCCcceeeecc
Q 004047 326 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 357 (777)
Q Consensus 326 ~~Gi~vV~aAGN~G~~~~~--------~~~~ap~vitVgA 357 (777)
.+||.+++|+|.+|....+ .+..+|++++||-
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999866543 2234699999996
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.21 E-value=1.8e-05 Score=73.26 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCCcccceEEEEecCCc--chhhhhHHHhhcCceEEEEecCCCCCCcc-----c--cCCccccEEEEeHHHHHHHHHH
Q 004047 415 SLTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEY-----S--YDAHYLPATAVLYDDAIKIHEY 485 (777)
Q Consensus 415 ~~~~~~~~g~ivl~~~g~~--~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 485 (777)
++...+++|||||++++.+ .+.+|..++.++||.|+|++|+....... . .....+|++.|+.+||+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 3446679999999999999 88999999999999999999875543211 1 2235799999999999999999
Q ss_pred HhcCCCc
Q 004047 486 IKSTNNP 492 (777)
Q Consensus 486 ~~~~~~~ 492 (777)
++.+...
T Consensus 117 l~~g~~~ 123 (127)
T cd04819 117 AERNDTL 123 (127)
T ss_pred HhcCCce
Confidence 9876543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.62 E-value=0.0002 Score=66.95 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCCcccceEEEEecCCc------chhhh-------hHHHhhcCceEEEEecCCC-------CCCccc-cCCccccEEEE
Q 004047 416 LTPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPA-------NGNEYS-YDAHYLPATAV 474 (777)
Q Consensus 416 ~~~~~~~g~ivl~~~g~~------~~~~~-------~~~~~~~Ga~gvi~~n~~~-------~~~~~~-~~~~~~p~~~i 474 (777)
++..+++|||||+.|+.| .|..| ...+.++||.++|++|... .+.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 346689999999999999 88888 6899999999999998632 221111 22356999999
Q ss_pred eHHHHHHHHHHHhcCCCceE
Q 004047 475 LYDDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 475 ~~~~g~~l~~~~~~~~~~~~ 494 (777)
+.+++..|...++.+..+.+
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765554
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.06 E-value=0.0012 Score=64.23 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC------------------cc-----------c-c---
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN------------------EY-----------S-Y--- 464 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~------------------~~-----------~-~--- 464 (777)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++..+.. .+ . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4689999999999999999999999999999999999842100 00 0 0
Q ss_pred -CCccccEEEEeHHHHHHHHHHHhc
Q 004047 465 -DAHYLPATAVLYDDAIKIHEYIKS 488 (777)
Q Consensus 465 -~~~~~p~~~i~~~~g~~l~~~~~~ 488 (777)
....||++-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 124589999999999999998754
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.85 E-value=0.0038 Score=67.79 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC------CccccCCccccEEEEeHHHHHHHHHHHhcCCC
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG------NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 491 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~------~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 491 (777)
..++++|++++.||.|.|.+|...++++||.++++.|+..+- +.....+..||+.+|++.+++.+..-...+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 567999999999999999999999999999999999985422 22233457899999999999999987777777
Q ss_pred ceEEEEec
Q 004047 492 PTAIIKQA 499 (777)
Q Consensus 492 ~~~~i~~~ 499 (777)
+.+.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66655543
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.61 E-value=0.0046 Score=57.83 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=50.3
Q ss_pred cceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCc------------------chhhhhHHHhhcCceE
Q 004047 388 KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVG 449 (777)
Q Consensus 388 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~------------------~~~~~~~~~~~~Ga~g 449 (777)
...++|+.+.. .....|...++...|++|||||+.|+.| .+..|...+.++||.|
T Consensus 20 ~~aelVfvGyG-------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYG-------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCC-------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 34666666532 1235688888889999999999999877 4667999999999999
Q ss_pred EEEecCCC
Q 004047 450 LILGNSPA 457 (777)
Q Consensus 450 vi~~n~~~ 457 (777)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.28 E-value=0.0064 Score=56.55 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcc------------hhhhhHHHhhcCceEEEEecCCC
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~------------~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
...|...++...+++|||||+.++.|. +..|..++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356887888888999999999998863 66899999999999999999854
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.12 E-value=0.0087 Score=56.68 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCcccceEEEEecCC------------------cchhhhhHHHhhcCceEEEEecCCCC
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~------------------~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
...|...++...+++|||||+.|+. |.+..|..++.++||.|||+|++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567777888889999999998874 46778999999999999999998653
No 72
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.90 E-value=0.014 Score=58.93 Aligned_cols=39 Identities=38% Similarity=0.491 Sum_probs=36.3
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCC
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 456 (777)
..+++|||||+++|.+.+..|..+|+++||.|+|+|++.
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 568999999999999988899999999999999999874
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.77 E-value=0.063 Score=44.93 Aligned_cols=64 Identities=30% Similarity=0.296 Sum_probs=39.4
Q ss_pred ceEEEEEEEEecCCCC-eeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCce
Q 004047 687 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 754 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 754 (777)
...+++++|+|.|..+ ...++++..|.|-.+...|..+.--++|++++++++|+++ .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp----~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP----ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC----CCCCCceE
Confidence 4578999999999755 5688888899999987788877544789999999999996 34445555
No 74
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.58 E-value=0.47 Score=41.80 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=60.3
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEECCcc
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 766 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 766 (777)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.++.|++... .+.+.+ .+.|...-...
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~------~~~g~~-~~~l~i~~e~~ 91 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT------KPLGDY-EGSLVITTEGG 91 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC------CCCceE-EEEEEEEECCe
Confidence 4577888999999999999997654334556777776556 679999999999952 234444 78887765456
Q ss_pred EEEeeEEEEe
Q 004047 767 LVRSPMAVSF 776 (777)
Q Consensus 767 ~v~~P~~~~~ 776 (777)
.+.+|+-+..
T Consensus 92 ~~~i~v~a~~ 101 (102)
T PF14874_consen 92 SFEIPVKAEV 101 (102)
T ss_pred EEEEEEEEEE
Confidence 7888887654
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.27 E-value=0.021 Score=53.37 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC
Q 004047 419 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 419 ~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
.+++|||+|++.|...+-.|.++|++.||.|+|+|.++.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999999854
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.63 E-value=0.039 Score=51.01 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc------ccc----CCccccEEEEeH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE------YSY----DAHYLPATAVLY 476 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~------~~~----~~~~~p~~~i~~ 476 (777)
...+|.... +.....+.++|++||+|+|..|..+++++||.++|+..+...... ... +...+|+.++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456676432 345678899999999999999999999999999999887543321 122 345789999988
Q ss_pred HHHHHHHHHHhcCCCceE
Q 004047 477 DDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 477 ~~g~~l~~~~~~~~~~~~ 494 (777)
.+|.-+...++.....-+
T Consensus 152 ~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred cceEEEehhHHHhCCccE
Confidence 888766655554444333
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.097 Score=55.93 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCCCCCCC---CCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHH
Q 004047 409 NQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 481 (777)
Q Consensus 409 ~~c~~~~~---~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 481 (777)
++|.+... ........++|+.||+|+|.+|..+++++|..++|+||+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 23456778999999999999999999999999999999866543322 234678999999999999
Q ss_pred HHHHHhcC
Q 004047 482 IHEYIKST 489 (777)
Q Consensus 482 l~~~~~~~ 489 (777)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875443
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.50 E-value=3.3 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECc
Q 004047 689 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 743 (777)
Q Consensus 689 ~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 743 (777)
-.+++.|.|....+.+|++++..++|+.+......+++ ++|++..+.|.+..+.
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 56889999999999999999998889999655578888 6799999999999964
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=87.68 E-value=0.84 Score=43.68 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCCCCcccceEEEEecCCcchh-------------------hhhHHHhhcCceEEEEecCC
Q 004047 414 GSLTPEKVKGKIVLCMRGSGFKL-------------------SKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 414 ~~~~~~~~~g~ivl~~~g~~~~~-------------------~~~~~~~~~Ga~gvi~~n~~ 456 (777)
.++...|++||||++.++...+. .|...+.+.||.|+|++++.
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 35667899999999997655332 38999999999999999874
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.19 E-value=4.1 Score=45.02 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=57.8
Q ss_pred ceEEEEEEEEecCCCCee-EEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 762 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~ 762 (777)
.+.++...+.|.|+.+.| -++++..|+|-++.|.|.++..-++|+++++++|++++ ..+.++.| +-+++-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP----~~a~aGdY-~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP----EDAGAGDY-RITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC----CCCCCCcE-EEEEEEe
Confidence 357888999999987754 57899999999999999987665789999999999997 46677877 4556554
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=1 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.1
Q ss_pred cCCCCceEEEEeecCCCCCCCCCC
Q 004047 139 ARYGQDVIVGLVDNGVWPESKSFS 162 (777)
Q Consensus 139 g~~G~GV~VgVIDtGid~~Hp~f~ 162 (777)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 789999999999999999988774
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=79.53 E-value=18 Score=33.06 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred CceEEEEEEEEecCCCCeeEEEEeeC----CCc-cE------------------EEEecceEEEccCCcEEEEEEEEEEC
Q 004047 686 NGTVIVKRTVTNVGGSKSVYFFSAKP----PMG-VS------------------VKANPSILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 686 ~~~~t~~~tvtn~~~~~~ty~~~~~~----~~g-~~------------------v~v~p~~~~~~~~~~~~~~~v~~~~~ 742 (777)
....+++++|+|.++++.+|.+++.. ..| +. +.-.|..+++ +++++++++++++.+
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcC
Confidence 45788999999999999999987642 111 11 1112445777 679999999999885
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=73.71 E-value=27 Score=31.64 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=40.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEeeC---CC----ccEEEEecceEEEccCCcEEEEEEEEEE
Q 004047 688 TVIVKRTVTNVGGSKSVYFFSAKP---PM----GVSVKANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
..+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|++++|.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 357789999999988888877764 11 1257799999999 5799999999 764
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=71.96 E-value=40 Score=38.05 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=46.7
Q ss_pred eEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECc
Q 004047 688 TVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 743 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 743 (777)
...+++.+.|....+.+|+++++..++..+...+..+++ ++|++.++.|.+..++
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 466889999999999999999999889888765457888 5799999999998863
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.60 E-value=52 Score=36.76 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.5
Q ss_pred ceEEEEEEEEecCCCCeeEEEEee-CCCccEEEEecc-----eEEEccCCcEEEEEEEEEEC
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAK-PPMGVSVKANPS-----ILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~~~~~~~~v~~~~~ 742 (777)
.+..+++++.|.|..+.+|.+++. .|+|-+....-. ++.+ .+||+++|+|.+.++
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 356789999999999999999998 777766554322 3555 579999999999986
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=62.72 E-value=38 Score=29.73 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=39.8
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEEC
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 742 (777)
......++|+|.++....|.+....|... .|.|..-.+ .++++.++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 34677889999999999999998877654 567988777 579999999998874
No 87
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=60.17 E-value=4.7 Score=29.85 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=18.5
Q ss_pred CchhhHHHHHHHHhhhcccccCC
Q 004047 1 MTKIFIFFLFLLTLLASSAQKQK 23 (777)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~ 23 (777)
|||.+++++|+-+++.++|.+++
T Consensus 3 lKKsllLlfflG~ISlSlCeeEr 25 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEEER 25 (46)
T ss_pred chHHHHHHHHHHHcccchHHHhc
Confidence 78999888888888888886554
No 88
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=53.94 E-value=1.2e+02 Score=28.30 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=47.5
Q ss_pred EEEEEEEEecCCCC-eeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004047 689 VIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 762 (777)
Q Consensus 689 ~t~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~ 762 (777)
..+.+-+-|-.+.. ..-++.......+++--.|..+++ ++++.++++.++.+. ....+..||.|+|.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVs------StetGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVS------STETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEE------eccCCEEEEEEEEe
Confidence 44555666766432 333455555577888889999999 568899999999883 34556889999985
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=48.16 E-value=71 Score=39.09 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=44.6
Q ss_pred eEEEEEEEEecCCCCeeEE--EEeeCCCccEEEEecc-------eEEEccCCcEEEEEEEEEE-CcccccccCCCceE--
Q 004047 688 TVIVKRTVTNVGGSKSVYF--FSAKPPMGVSVKANPS-------ILFFDHIGQKKSFTITVRL-GSETTRQGLTKQYV-- 755 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~--~~~~~~~g~~v~v~p~-------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-- 755 (777)
..+++++|||+|+.+.... +.+..|... +. .|. ++.+ ++||++++++++.. .+-.+-. ..+.|+
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d-~~~~~~v~ 760 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PG-VPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVAN-EEGKRVLP 760 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CC-CcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEc-CCCcEEEe
Confidence 4789999999998665544 444444321 11 122 3444 57999999998875 3211111 123342
Q ss_pred EEEEEEE--CCccEEEee
Q 004047 756 FGWYRWT--DGLHLVRSP 771 (777)
Q Consensus 756 ~G~~~~~--~~~~~v~~P 771 (777)
.|...+. +..|.|+++
T Consensus 761 ~G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 761 LGDHVLMLGDLEHSLSIE 778 (779)
T ss_pred CccEEEEEeCCccceEEe
Confidence 3544433 456777765
No 90
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.43 E-value=1.2e+02 Score=25.76 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=31.7
Q ss_pred EEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEE
Q 004047 689 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVR 740 (777)
Q Consensus 689 ~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~ 740 (777)
..+.++++|.|....++++.-..- -.-.|.++++ ++|++++..+.+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPLA 66 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEeec
Confidence 478999999998888888765211 1123556677 5688877777663
No 91
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=46.36 E-value=77 Score=23.19 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=24.7
Q ss_pred EEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEE
Q 004047 693 RTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 739 (777)
Q Consensus 693 ~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~ 739 (777)
.+++|.|+.+...+- +...=|-.. ++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~-v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD-VQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEE-eeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 678999987665432 222223322 22222234 679998888864
No 92
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=45.65 E-value=7.5 Score=28.10 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=13.9
Q ss_pred CchhhHHHHHHHHhhhccccc
Q 004047 1 MTKIFIFFLFLLTLLASSAQK 21 (777)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~ 21 (777)
|||++.++++++.++..++|.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 899877666666655555554
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=45.33 E-value=26 Score=36.93 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=51.7
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHH----------HHHHHHHHHhCCceEEEeecCCCCC-----------
Q 004047 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEAD----------MLAAIDDAIRDGVHVLSISIGTNQP----------- 309 (777)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~----------i~~ai~~a~~~gvdVIn~SlG~~~~----------- 309 (777)
++-+||-+.|-+...+|...++.. --++..+- -+.-+++|+++|.+||+ |.|....
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~ed--ll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Di 213 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEED--LLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADI 213 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhh--hhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhc
Confidence 567899999988887776532100 00112222 23446788999999997 5665311
Q ss_pred CCCCccHHHHHHHHH-H----hCCcEEEEecCC
Q 004047 310 FAFNRDGIAIGALNA-V----KHNILVACSAGN 337 (777)
Q Consensus 310 ~~~~~~~~~~a~~~a-~----~~Gi~vV~aAGN 337 (777)
.....||+++...+- + ..||.||+|+--
T Consensus 214 s~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 214 SETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred cccccCcHHHHHHHHHHHhccccCCceEEecCC
Confidence 123568888877653 3 347889998643
No 94
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=43.72 E-value=60 Score=39.66 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=34.6
Q ss_pred ceEEEEEEEEecCCCCe--eEEEEeeCCCccEEEEecc-------eEEEccCCcEEEEEEEEEEC
Q 004047 687 GTVIVKRTVTNVGGSKS--VYFFSAKPPMGVSVKANPS-------ILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~--ty~~~~~~~~g~~v~v~p~-------~~~~~~~~~~~~~~v~~~~~ 742 (777)
+..+++++|||+|+.+. +-.+.+..|.+- + ..|. ++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 45889999999997544 444455555322 1 1232 2444 689999999998874
No 95
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=41.72 E-value=2.4e+02 Score=24.66 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=35.8
Q ss_pred CCceEEEEEEEEecCCCC-eeEEE-----EeeCCCccE---EEEecceEEEccCCcEEEEEEEEEEC
Q 004047 685 LNGTVIVKRTVTNVGGSK-SVYFF-----SAKPPMGVS---VKANPSILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 685 ~~~~~t~~~tvtn~~~~~-~ty~~-----~~~~~~g~~---v~v~p~~~~~~~~~~~~~~~v~~~~~ 742 (777)
.....++.++++|..+.. .+-++ ++.. .|+. .......+++ +++++.++++++...
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 346788999999999877 55332 3343 3664 4555556677 578999999998874
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=37.82 E-value=15 Score=16.69 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=4.4
Q ss_pred cccCCC
Q 004047 513 NFTSRG 518 (777)
Q Consensus 513 ~fSS~G 518 (777)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577876
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.14 E-value=2.4e+02 Score=27.70 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=35.4
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeC----CCccEEEEecceE--EEccCCcEEEEEEEEEEC
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKP----PMGVSVKANPSIL--FFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~----~~g~~v~v~p~~~--~~~~~~~~~~~~v~~~~~ 742 (777)
...+++++|.|.|+ ..-|.+++.. ++.+++.---.+. ..-++|++.+.++++++.
T Consensus 38 ~~v~V~~~iyN~G~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS-SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred cEEEEEEEEEECCC-CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 46889999999997 5667777664 2444442111122 212678888888888873
No 98
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=35.13 E-value=2.7e+02 Score=23.66 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=35.4
Q ss_pred CCeeEeecCCceEEEEEEEEecCCCCeeEEEEee-----CCCccEEEEecceEEEccCCcEEEEEEEEEE
Q 004047 677 YPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAK-----PPMGVSVKANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 677 ~ps~~~~~~~~~~t~~~tvtn~~~~~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
-+++++.+-.+ +++++|.-.|+.....++.+. +-.|.+..-...+|+|.+....++|+|.+..
T Consensus 8 ~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~d 75 (90)
T smart00237 8 QPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIID 75 (90)
T ss_pred CCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeC
Confidence 34556655443 455666555554444444443 3356666656778999653345666666554
No 99
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=35.10 E-value=1.9e+02 Score=24.47 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=30.7
Q ss_pred CceEEEEEEEEecCCCC-eeEEEEeeCCCccEEEEecceE-EEccCCcEEEEEEEEEE
Q 004047 686 NGTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSIL-FFDHIGQKKSFTITVRL 741 (777)
Q Consensus 686 ~~~~t~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~-~~~~~~~~~~~~v~~~~ 741 (777)
....+++++|+|.|... ..+.+.+... |..+ .-..+ .+ ++|++.++++++..
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTP 71 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEe
Confidence 35788999999999753 5556555432 3333 11122 34 57888888888887
No 100
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=33.20 E-value=45 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHhcc
Q 004047 577 AALLKAIHPDWSSAAIRSALMTTA 600 (777)
Q Consensus 577 aALl~q~~P~~s~~~ik~~L~~TA 600 (777)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346788999999999999996654
No 101
>PRK15019 CsdA-binding activator; Provisional
Probab=30.00 E-value=52 Score=31.16 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=26.9
Q ss_pred eeccccchhhHHHHHHHHHHHHCCCCCHHHHHH
Q 004047 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (777)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 594 (777)
.+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 334454 48999999999999999999999876
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.59 E-value=1e+02 Score=26.96 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=29.9
Q ss_pred ceEEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEecc--eEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~p~--~~~~~~~~~~~~~~v~ 738 (777)
+..+++++|+|.|+.+ +-|++--. ..-|..+.+ |+ .+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 4467899999999865 34443211 113444444 22 4667 46888877765
No 103
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.87 E-value=2.6e+02 Score=23.47 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=26.8
Q ss_pred EEEEEEEEecCCCCee--------EEEEeeCCCccEE---------EEecceEEEccCCcEEEEEEEEEE
Q 004047 689 VIVKRTVTNVGGSKSV--------YFFSAKPPMGVSV---------KANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 689 ~t~~~tvtn~~~~~~t--------y~~~~~~~~g~~v---------~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
..++++|+|.++.+.+ |.+.+....|-.| +-.-...++ ++||+++|+.++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 4577889999875443 3344444444333 222334555 57999999988776
No 104
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.73 E-value=57 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=27.6
Q ss_pred eeccccchhhHHHHHHHHHHHHCCCCCHHHHHHH
Q 004047 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 595 (777)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~ 595 (777)
.+.|.| =|++|-|++|||.+.+-..+|++|.+.
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 344555 489999999999999999999998743
No 105
>PRK13203 ureB urease subunit beta; Reviewed
Probab=28.37 E-value=1e+02 Score=27.04 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=29.7
Q ss_pred ceEEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEecc--eEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~p~--~~~~~~~~~~~~~~v~ 738 (777)
+..+++++|+|.|+.+ +-|++--. ..-|..+.+ |+ .+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4467899999999865 34443211 113444443 22 4667 46888877764
No 106
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=27.82 E-value=2.6e+02 Score=24.00 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=34.2
Q ss_pred CCCCeeEeecCCceEEEEEEEEecCC--CCeeEEEEee---CCCccEEEEecceEEEccCCcEEEEEEEEEE
Q 004047 675 LNYPSIAIPNLNGTVIVKRTVTNVGG--SKSVYFFSAK---PPMGVSVKANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 675 ln~ps~~~~~~~~~~t~~~tvtn~~~--~~~ty~~~~~---~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
+.-+++.+.+-.+...+.+++++ +. .+.+..+... +-.|......+.+++|.+...++++.|++-.
T Consensus 15 f~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~d 85 (100)
T PF03160_consen 15 FSSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIID 85 (100)
T ss_dssp ESSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB--
T ss_pred EeCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeC
Confidence 44456666655555555555554 42 2333333322 2246777777888999765556777777654
No 107
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.52 E-value=1.1e+02 Score=26.66 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=29.8
Q ss_pred ceEEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEe-cceEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKAN-PSILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~-p~~~~~~~~~~~~~~~v~ 738 (777)
+..+.+++|+|.|+.+ +-|++--. ..-|..+.+- -..+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 4467899999999865 34443211 1134444431 114667 56888887765
No 108
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=27.27 E-value=1.8e+02 Score=24.17 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=26.6
Q ss_pred EEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEECC
Q 004047 716 SVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDG 764 (777)
Q Consensus 716 ~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~~~ 764 (777)
.+.+.|..+++. .|+++.|++++... . ... ...+.|+..
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~-----~--~~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPS-----S--AKV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECC-----C--CCc--cceEEEEEC
Confidence 467889888884 68999999997652 1 111 456777754
No 109
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.74 E-value=1.2e+02 Score=26.56 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=28.9
Q ss_pred EEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEe-cceEEEccCCcEEEEEEE
Q 004047 689 VIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKAN-PSILFFDHIGQKKSFTIT 738 (777)
Q Consensus 689 ~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~-p~~~~~~~~~~~~~~~v~ 738 (777)
.+++++|+|.|+.+ +-|++--. ..-|..+.+- -..+.| .+|+++++++-
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 67899999999865 34443211 1134444431 124667 46888877765
No 110
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.39 E-value=1.9e+02 Score=31.16 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=50.4
Q ss_pred cCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC----ceEEEeecCCCCCCC---CCccHHHHHHHHHHhC
Q 004047 255 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG----VHVLSISIGTNQPFA---FNRDGIAIGALNAVKH 327 (777)
Q Consensus 255 AP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g----vdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~~ 327 (777)
.|.+++..|-+.-. | ......|+.||+.+-+.+ +|||-+-=||++..+ +.+..+. ....+.
T Consensus 39 ~~~~~~~~~p~~vQ---G------~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~ 106 (319)
T PF02601_consen 39 NPIVEIILYPASVQ---G------EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAAS 106 (319)
T ss_pred CCCcEEEEEecccc---c------cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhC
Confidence 45666666655433 3 357889999999998765 999999999954322 2233333 344566
Q ss_pred CcEEEEecCCCC
Q 004047 328 NILVACSAGNSG 339 (777)
Q Consensus 328 Gi~vV~aAGN~G 339 (777)
-+.||.+-|=+-
T Consensus 107 ~~PvisaIGHe~ 118 (319)
T PF02601_consen 107 PIPVISAIGHET 118 (319)
T ss_pred CCCEEEecCCCC
Confidence 799999999875
No 111
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.29 E-value=54 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHH
Q 004047 568 MSCPHVAAAAALL 580 (777)
Q Consensus 568 mAaP~VAG~aALl 580 (777)
.|+|.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 112
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=25.26 E-value=3.4e+02 Score=24.89 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=15.2
Q ss_pred eEEEccCCcEEEEEEEEEEC
Q 004047 723 ILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 723 ~~~~~~~~~~~~~~v~~~~~ 742 (777)
+++.+++|+.+.|.|.+.+.
T Consensus 74 sVTWtapgqf~~f~vs~~~~ 93 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRAE 93 (124)
T ss_pred EEEEcCCCceEEEEEEeecC
Confidence 35556788888999998774
No 113
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=24.98 E-value=4.4e+02 Score=22.86 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=24.3
Q ss_pred ceEEEEEEEEecCCCC-eeEEEEeeCCCccEEE
Q 004047 687 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVK 718 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~-~ty~~~~~~~~g~~v~ 718 (777)
+.....++|+|.++.+ ..|++.+.-|.+.++.
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 3466789999999877 4699988877666654
No 114
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.94 E-value=1.8e+02 Score=23.63 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=20.4
Q ss_pred ceEEEEEEEEecCCCCee-EEEEeeCCCccEE
Q 004047 687 GTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSV 717 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~t-y~~~~~~~~g~~v 717 (777)
...+++++|+|.|+.... ..+.-.-|.|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 568899999999975533 3344334566554
No 115
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.92 E-value=73 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=26.9
Q ss_pred eeccccchhhHHHHHHHHHHHHCCCCCHHHHHH
Q 004047 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 594 (777)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 594 (777)
.+.|.| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 59999999999999999999999865
No 116
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=24.75 E-value=97 Score=27.04 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=25.9
Q ss_pred ceEEEEEEEEecCCCCe----eEEEEee---------CCCccEEEEecc--eEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSKS----VYFFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~----ty~~~~~---------~~~g~~v~v~p~--~~~~~~~~~~~~~~v~ 738 (777)
+..+++++|+|.|+.+. -|++--. ..-|..+.+ |+ .+.| .+|+++++++-
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEEE
Confidence 45788999999998653 2332111 113444444 22 4667 46888877764
No 117
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=24.63 E-value=6.3e+02 Score=31.46 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCCCeeEeecCCceEEEEEEEEecC-CCCeeEEEEee-----CCCccEEEEecceEEEccCCc-EEEEEEEEEEC
Q 004047 675 LNYPSIAIPNLNGTVIVKRTVTNVG-GSKSVYFFSAK-----PPMGVSVKANPSILFFDHIGQ-KKSFTITVRLG 742 (777)
Q Consensus 675 ln~ps~~~~~~~~~~t~~~tvtn~~-~~~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~-~~~~~v~~~~~ 742 (777)
+.-+++.+.+-. .+++++|+=.| +...+-++... +-.|.+..-...+|+|.+ || +++++|.+..+
T Consensus 404 Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~P-GEt~KtItV~IIDD 475 (928)
T TIGR00845 404 FEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKP-GETQKEFRIGIIDD 475 (928)
T ss_pred ecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECC-CceEEEEEEEEccC
Confidence 444455555433 34566665444 33333444333 335667776777899954 55 46666666554
No 118
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.13 E-value=72 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.132 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHCCCCCHHHHHH
Q 004047 570 CPHVAAAAALLKAIHPDWSSAAIRS 594 (777)
Q Consensus 570 aP~VAG~aALl~q~~P~~s~~~ik~ 594 (777)
|++|.|.+|++++.+-..+|++|..
T Consensus 80 A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 80 ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 7999999999999999999998753
No 119
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.10 E-value=81 Score=28.95 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=25.9
Q ss_pred eeccccchhhHHHHHHHHHHHHCCCCCHHHHHHH
Q 004047 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 595 (777)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~ 595 (777)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4445544 77999999999999999999998654
No 120
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.06 E-value=2.3e+02 Score=25.21 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred eeec-CCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCC
Q 004047 252 SGGA-PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGT 306 (777)
Q Consensus 252 ~GvA-P~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 306 (777)
.+.. ++++|+.+--|+ | |....++.-+++..+.|+|+|-+|-..
T Consensus 31 ~~y~~~~~elvgf~~Cg----G-------Cpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGFFTCG----G-------CPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEEeeCC----C-------CChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 3444 467777764443 4 888999999999999999999999776
No 121
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.61 E-value=50 Score=21.14 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=8.7
Q ss_pred CchhhHHHHHHHHhh
Q 004047 1 MTKIFIFFLFLLTLL 15 (777)
Q Consensus 1 m~~~~~~~l~~~~~~ 15 (777)
|||+++.++.++.+.
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 377766665555443
No 122
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.09 E-value=1.4e+02 Score=28.06 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=30.0
Q ss_pred ceEEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEecc--eEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~p~--~~~~~~~~~~~~~~v~ 738 (777)
+..+++++|+|+|+.+ +-|++--. ..-|..+.+ |+ .+.| .+|+++++++-
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4577899999999865 34543211 113444443 22 4566 46888877765
No 123
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.59 E-value=81 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=24.7
Q ss_pred ccceeeccccchhhHHHHHHH------HHHHHCCCCCHHHHHHHHH
Q 004047 558 VKYTIFSGTSMSCPHVAAAAA------LLKAIHPDWSSAAIRSALM 597 (777)
Q Consensus 558 ~~y~~~sGTSmAaP~VAG~aA------Ll~q~~P~~s~~~ik~~L~ 597 (777)
++--.+.||=+..=.|....+ -+.+.||++++++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 344566777777666655532 4566799999999999984
No 124
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.40 E-value=1.3e+02 Score=21.63 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHhcc
Q 004047 576 AAALLKAIHPDWSSAAIRSALMTTA 600 (777)
Q Consensus 576 ~aALl~q~~P~~s~~~ik~~L~~TA 600 (777)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998644
No 125
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=21.63 E-value=43 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHhhhccc
Q 004047 1 MTKIFIFFLFLLTLLASSA 19 (777)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~ 19 (777)
||+++||+++++++++.-+
T Consensus 1 mk~~flfifvclfifsana 19 (159)
T PF14673_consen 1 MKNCFLFIFVCLFIFSANA 19 (159)
T ss_pred CceEEeehhhhhhhhcCCc
Confidence 8999999888877766543
No 126
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.58 E-value=1.6e+02 Score=27.09 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=29.5
Q ss_pred ceEEEEEEEEecCCCC----eeEEEEee---------CCCccEEEEecc--eEEEccCCcEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKANPS--ILFFDHIGQKKSFTIT 738 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~----~ty~~~~~---------~~~g~~v~v~p~--~~~~~~~~~~~~~~v~ 738 (777)
+..+++++|+|+|+.+ +-|++--. ..-|..+.+ |+ .+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4467899999999865 34443211 112444443 22 4566 46888877765
No 127
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.12 E-value=3.6e+02 Score=27.69 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=36.4
Q ss_pred eEEEEEEEEecCCCCeeEEEEee---CC---C----------ccEEEEecceEEEccCCcEEEEEEEEEE
Q 004047 688 TVIVKRTVTNVGGSKSVYFFSAK---PP---M----------GVSVKANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~~~~~---~~---~----------g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
.....++|.|.|+.+..+++.+. .| . .-.+-++|..+++ ++|+++.|.|--..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 35567899999998888877653 11 1 1256788999988 46777777765433
No 128
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=21.10 E-value=4.4e+02 Score=28.14 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=14.3
Q ss_pred eEEEEEEEEecCCCCeeEEEEee
Q 004047 688 TVIVKRTVTNVGGSKSVYFFSAK 710 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~~~~~ 710 (777)
...+++||+|..+.+.+-.+.-+
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~ 265 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQ 265 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeC
Confidence 35667778888866655444433
No 129
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=20.68 E-value=2.9e+02 Score=30.15 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred ceEEEEEEEEecCCCCeeEE----EEee--C----------CC----ccEEEEecceEEEccCCcEEEEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSKSVYF----FSAK--P----------PM----GVSVKANPSILFFDHIGQKKSFTITVRL 741 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~----~~~~--~----------~~----g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 741 (777)
.+.+++++|||.|+++..-- +.+. . |+ .-.++|+|+.-- ++||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI--~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPI--APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B---TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCc--CCCceEEEEEEeeh
Confidence 57889999999998754321 1111 1 11 012345555332 57999999998765
No 130
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.62 E-value=2.1e+02 Score=32.11 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred ecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC-ceEEEeecCCCCCC---CCCccHHHHHHHHHHhCCc
Q 004047 254 GAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG-VHVLSISIGTNQPF---AFNRDGIAIGALNAVKHNI 329 (777)
Q Consensus 254 vAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g-vdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~Gi 329 (777)
=.|.++++.|-+.-. | ......|++||+.+-+.+ +|||=.-=|+++-. .+.++.+. ......-+
T Consensus 159 R~P~~~viv~pt~VQ---G------~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~va---RAi~~s~i 226 (440)
T COG1570 159 RFPSVEVIVYPTLVQ---G------EGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVA---RAIAASRI 226 (440)
T ss_pred hCCCCeEEEEecccc---C------CCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHH---HHHHhCCC
Confidence 358899998887554 3 357889999999998876 99999999995432 33444444 34456788
Q ss_pred EEEEecCCCC
Q 004047 330 LVACSAGNSG 339 (777)
Q Consensus 330 ~vV~aAGN~G 339 (777)
.||.|-|-+-
T Consensus 227 PvISAVGHEt 236 (440)
T COG1570 227 PVISAVGHET 236 (440)
T ss_pred CeEeecccCC
Confidence 9999888875
No 131
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.03 E-value=64 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=12.5
Q ss_pred CchhhHHHHHHHHhhhccc
Q 004047 1 MTKIFIFFLFLLTLLASSA 19 (777)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~ 19 (777)
|||++++++++++.+...|
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 9999888755555444444
Done!