BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004048
         (776 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
          Length = 442

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 71/124 (57%), Gaps = 15/124 (12%)

Query: 444 LANIADGLASLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQ 503
           L  I + L   FG   VG+N+Y+TP  SQGL  HYDD  VF+ QL G K W+++  P+V 
Sbjct: 124 LWRIQEKLECYFGS-LVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLY-HPTVP 181

Query: 504 LPRLYNPCDIVNGVEAESSMAE-CRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSL 562
           L R Y+       VEAE  +     +F+L+ GD+LY PRG  H+A    D   GLA  S 
Sbjct: 182 LAREYS-------VEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA----DTPAGLAH-ST 229

Query: 563 HLTL 566
           H+T+
Sbjct: 230 HVTI 233


>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
 pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
 pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
 pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
          Length = 463

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 460 VGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQ--PSVQLPRLYNPCDIVNGV 517
            G+N+YLTPPNSQG A HYDD   FV QL G K W+++    P+ +L    +P       
Sbjct: 145 AGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSP-----NF 199

Query: 518 EAESSMAECRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTL 566
             +       Q +L  GD+LY PRGF H+A  +D         SLHLTL
Sbjct: 200 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQD------GVHSLHLTL 242


>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
 pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
          Length = 489

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 460 VGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQ--PSVQLPRLYNPCDIVNGV 517
            G+N+YLTPPNSQG A HYDD   FV QL G K W+++    P+ +L    +P       
Sbjct: 164 AGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSP-----NF 218

Query: 518 EAESSMAECRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTL 566
             +       Q +L  GD+LY PRGF H+A  +D         SLHLTL
Sbjct: 219 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQD------GVHSLHLTL 261


>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
           (2636534) From Bacillus Subtilis At 2.60 A Resolution
 pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
           (2636534) From Bacillus Subtilis At 2.60 A Resolution
 pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
           (2636534) From Bacillus Subtilis At 2.60 A Resolution
 pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
           (2636534) From Bacillus Subtilis At 2.60 A Resolution
          Length = 342

 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 470 NSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPR--------LYNPCDIVN---GVE 518
           N  G  +H+D +   + Q+ G K WK+    +V  P          Y P D+ +   G  
Sbjct: 150 NGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPXQHYDLSEAPYYPDDLQSYWKGDP 209

Query: 519 AESSMAECRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLG 567
            +  + +     L  G  LY+PRG  H        ++  A  +L++T G
Sbjct: 210 PKEDLPDAEIVNLTPGTXLYLPRGLWHST------KSDQATLALNITFG 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,268,148
Number of Sequences: 62578
Number of extensions: 721473
Number of successful extensions: 1593
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 7
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)